Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000861
(1736 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776523.2| cytosol aminopeptidase [Bos taurus]. 917 0.0
Alignment gi|NP_001029469.1| probable aminopeptidase NPEPL1 [Bos taurus]. 138 2e-32
>ref|NP_776523.2| cytosol aminopeptidase [Bos taurus].
Length = 519
Score = 917 bits (2370), Expect = 0.0
Identities = 453/502 (90%), Positives = 473/502 (94%)
Frame = +2
Query: 158 SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 337
SV+R W PGP AA+MTKGLVLGIYSKEKE+D PQFTSAGENF+KLVSGKLREILNISGPP
Sbjct: 18 SVKRLWAPGPAAADMTKGLVLGIYSKEKEEDEPQFTSAGENFNKLVSGKLREILNISGPP 77
Query: 338 LKAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEI 517
LKAGKTRTFYGLHEDF S D+QENWHEGKENIRAAVAAGCRQIQDLEI
Sbjct: 78 LKAGKTRTFYGLHEDFPSVVVVGLGKKTAGIDEQENWHEGKENIRAAVAAGCRQIQDLEI 137
Query: 518 PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 697
PSVEVDPCGDAQAAAEGAVLGLYEYD+LKQK+KVVVSAKLHGS DQEAWQRGVLFASGQN
Sbjct: 138 PSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKRKVVVSAKLHGSEDQEAWQRGVLFASGQN 197
Query: 698 LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEE 877
LAR LMETPANEMTPT+FAE++E+NLKSAS KTDV IRPKSWIEEQEMGSFLSVAKGSEE
Sbjct: 198 LARRLMETPANEMTPTKFAEIVEENLKSASIKTDVFIRPKSWIEEQEMGSFLSVAKGSEE 257
Query: 878 PPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIV 1057
PPVFLEIHYKGSP+AS+PPLVFVGKGITFDSGGISIKA+ANMDLMRADMGGAATICS IV
Sbjct: 258 PPVFLEIHYKGSPNASEPPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIV 317
Query: 1058 SAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY 1237
SAAKLDLPIN+VGLAPLCENMPSGKANKPGDVVRA+NGKTIQVDNTDAEGRLILADALCY
Sbjct: 318 SAAKLDLPINIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCY 377
Query: 1238 AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 1417
AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH
Sbjct: 378 AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 437
Query: 1418 YTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQ 1597
YT+Q++DCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPY +
Sbjct: 438 YTRQVIDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK 497
Query: 1598 GMAGRPTRTLIEFLLXVSXDSA 1663
GMAGRPTRTLIEFL S DSA
Sbjct: 498 GMAGRPTRTLIEFLFRFSQDSA 519
>ref|NP_001029469.1| probable aminopeptidase NPEPL1 [Bos taurus].
Length = 523
Score = 138 bits (347), Expect = 2e-32
Identities = 95/298 (31%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 689 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
G LA +++TP NEM F E I+K K V IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDTFLEEIKKVGKELGIVPTV-IRDEE-LKARGFGGIYGVGKA 234
Query: 869 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
+ PP + + +PD + + +VGKGI +D+GG+S+K M M+ D GGAA +
Sbjct: 235 AIHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLG 292
Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
+A K L + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAVKQGFKDTLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 353 VSYACKDLGADIILDVATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRQCGDLVHPLV 412
Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 413 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 70,811,359
Number of extensions: 2076261
Number of successful extensions: 7760
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7740
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 470
Effective length of database: 14,107,870
Effective search space: 6630698900
Effective search space used: 6630698900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000861
(1736 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536228.2| PREDICTED: similar to leucine aminopeptidase [C... 894 0.0
Alignment gi|XP_543071.2| PREDICTED: similar to aminopeptidase-like 1 [Ca... 125 2e-28
>ref|XP_536228.2| PREDICTED: similar to leucine aminopeptidase [Canis familiaris].
Length = 519
Score = 894 bits (2311), Expect = 0.0
Identities = 438/501 (87%), Positives = 469/501 (93%)
Frame = +2
Query: 161 VRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPL 340
V+R W G AA+MTKGLVLGIY+K+KEDD PQFTSAGENF+KLVSGKLREILNISGPPL
Sbjct: 19 VKRLWVRGLSAADMTKGLVLGIYTKDKEDDVPQFTSAGENFNKLVSGKLREILNISGPPL 78
Query: 341 KAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEIP 520
KAGKTRTFYGLHEDF S DDQENWHEGKENIR AVAAGCRQ+QDLE+
Sbjct: 79 KAGKTRTFYGLHEDFPSVVVVGLGKKAAGVDDQENWHEGKENIRVAVAAGCRQVQDLELS 138
Query: 521 SVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQNL 700
SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKK VVSA+LHG GDQEAWQ+GVLFASGQNL
Sbjct: 139 SVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKPVVSAQLHGGGDQEAWQKGVLFASGQNL 198
Query: 701 ARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEP 880
ARHLMETPANEMTPTRFA++IEKNL+SA+SKT+V+IRPKSWIEEQEMGSFLSVAKGS+EP
Sbjct: 199 ARHLMETPANEMTPTRFAKIIEKNLRSANSKTEVYIRPKSWIEEQEMGSFLSVAKGSDEP 258
Query: 881 PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIVS 1060
PVFLEIHY+GSP+AS+ PLVFVGKGITFDSGGISIKA+ANMDLMRADMGGAATICS IVS
Sbjct: 259 PVFLEIHYRGSPNASEAPLVFVGKGITFDSGGISIKAAANMDLMRADMGGAATICSAIVS 318
Query: 1061 AAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA 1240
AAKL+LPIN+VGLAPLCENMPSGKANKPGDVV+AKNGKTIQVDNTDAEGRLILADALCYA
Sbjct: 319 AAKLNLPINIVGLAPLCENMPSGKANKPGDVVKAKNGKTIQVDNTDAEGRLILADALCYA 378
Query: 1241 HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY 1420
HTFNPK+IINAATLTGAMD+ALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY
Sbjct: 379 HTFNPKIIINAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY 438
Query: 1421 TKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQG 1600
T+Q+VDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPY +G
Sbjct: 439 TRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRKG 498
Query: 1601 MAGRPTRTLIEFLLXVSXDSA 1663
M GRPTRTLIEFLL S ++A
Sbjct: 499 MTGRPTRTLIEFLLQFSENNA 519
>ref|XP_543071.2| PREDICTED: similar to aminopeptidase-like 1 [Canis familiaris].
Length = 397
Score = 125 bits (313), Expect = 2e-28
Identities = 76/208 (36%), Positives = 111/208 (53%), Gaps = 1/208 (0%)
Frame = +2
Query: 689 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
G LA +++TP NEM F E I+K K T IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDTFLEEIKKVGKDLGI-TPTIIRDEE-LKTRGFGGIYGVGKA 234
Query: 869 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
+ PP + + +P+ + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 235 ALHPPALAVLSH--TPEGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292
Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALG 1309
+ YA +I++ ATLTGA IA G
Sbjct: 353 VSYACKDLGADIILDMATLTGAQGIATG 380
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 73,989,333
Number of extensions: 2132381
Number of successful extensions: 7665
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7646
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 470
Effective length of database: 15,274,216
Effective search space: 7178881520
Effective search space used: 7178881520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000861
(1736 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056991.2| cytosol aminopeptidase [Homo sapiens]. 897 0.0
Alignment gi|NP_001191802.1| probable aminopeptidase NPEPL1 isoform 3 [Ho... 139 8e-33
Alignment gi|NP_001191801.1| probable aminopeptidase NPEPL1 isoform 2 [Ho... 139 8e-33
Alignment gi|NP_078939.3| probable aminopeptidase NPEPL1 isoform 1 [Homo ... 139 8e-33
>ref|NP_056991.2| cytosol aminopeptidase [Homo sapiens].
Length = 519
Score = 897 bits (2319), Expect = 0.0
Identities = 442/502 (88%), Positives = 468/502 (93%)
Frame = +2
Query: 158 SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 337
+VRRF A+MTKGLVLGIYSKEKEDD PQFTSAGENFDKL++GKLRE LNISGPP
Sbjct: 18 AVRRFGSRSLSTADMTKGLVLGIYSKEKEDDVPQFTSAGENFDKLLAGKLRETLNISGPP 77
Query: 338 LKAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEI 517
LKAGKTRTFYGLH+DF S D+QENWHEGKENIRAAVAAGCRQIQDLE+
Sbjct: 78 LKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKENIRAAVAAGCRQIQDLEL 137
Query: 518 PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 697
SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKK+ VSAKL+GSGDQEAWQ+GVLFASGQN
Sbjct: 138 SSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGSGDQEAWQKGVLFASGQN 197
Query: 698 LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEE 877
LAR LMETPANEMTPTRFAE+IEKNLKSASSKT+VHIRPKSWIEEQ MGSFLSVAKGS+E
Sbjct: 198 LARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWIEEQAMGSFLSVAKGSDE 257
Query: 878 PPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIV 1057
PPVFLEIHYKGSP+A++PPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS IV
Sbjct: 258 PPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIV 317
Query: 1058 SAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY 1237
SAAKL+LPIN++GLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY
Sbjct: 318 SAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCY 377
Query: 1238 AHTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 1417
AHTFNPKVI+NAATLTGAMD+ALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH
Sbjct: 378 AHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH 437
Query: 1418 YTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQ 1597
YT+Q+VDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPY +
Sbjct: 438 YTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYLRK 497
Query: 1598 GMAGRPTRTLIEFLLXVSXDSA 1663
GM GRPTRTLIEFLL S D+A
Sbjct: 498 GMTGRPTRTLIEFLLRFSQDNA 519
>ref|NP_001191802.1| probable aminopeptidase NPEPL1 isoform 3 [Homo sapiens].
Length = 475
Score = 139 bits (350), Expect = 8e-33
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 689 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 129 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 186
Query: 869 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 187 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 244
Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 245 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 304
Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 305 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 364
Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 365 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 418
>ref|NP_001191801.1| probable aminopeptidase NPEPL1 isoform 2 [Homo sapiens].
Length = 495
Score = 139 bits (350), Expect = 8e-33
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 689 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 149 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 206
Query: 869 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 207 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 264
Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 265 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 324
Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 325 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 384
Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 385 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 438
>ref|NP_078939.3| probable aminopeptidase NPEPL1 isoform 1 [Homo sapiens].
Length = 523
Score = 139 bits (350), Expect = 8e-33
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 689 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
G LA +++TP NEM F E I K K + IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDTFLEEINKVGKELGIIPTI-IRDEE-LKTRGFGGIYGVGKA 234
Query: 869 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 235 ALHPPALAVLSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292
Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAIKQGFKDNLHAVFCLAENSVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 353 VSYACKDLGADIILDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 412
Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 413 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 72,317,266
Number of extensions: 2078963
Number of successful extensions: 7359
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7332
Number of HSP's successfully gapped: 4
Length of query: 578
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 470
Effective length of database: 14,737,052
Effective search space: 6926414440
Effective search space used: 6926414440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000861
(1736 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077754.3| cytosol aminopeptidase [Mus musculus]. 890 0.0
Alignment gi|NP_998898.1| probable aminopeptidase NPEPL1 [Mus musculus]. 137 3e-32
>ref|NP_077754.3| cytosol aminopeptidase [Mus musculus].
Length = 519
Score = 890 bits (2301), Expect = 0.0
Identities = 434/501 (86%), Positives = 467/501 (93%)
Frame = +2
Query: 161 VRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPPL 340
VR W G A+MTKGLVLGIY+K+K+DD PQFTSAGE+F+KLVSGKLRE+LNISGPPL
Sbjct: 19 VRGLWDRGLSTADMTKGLVLGIYAKDKDDDLPQFTSAGESFNKLVSGKLREMLNISGPPL 78
Query: 341 KAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEIP 520
KAGKTRTFYGLH+DF S DDQENWHEGKENIRAAVAAGCRQ+QDLE+P
Sbjct: 79 KAGKTRTFYGLHQDFPSVVVVGLGKRSAGVDDQENWHEGKENIRAAVAAGCRQVQDLELP 138
Query: 521 SVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQNL 700
SVEVDPCGDAQAAAEGAVLGLYEYD+LKQKKKV VSAKLHGSGD EAW++GVLFASGQNL
Sbjct: 139 SVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKVAVSAKLHGSGDLEAWEKGVLFASGQNL 198
Query: 701 ARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEP 880
ARHLME+PANEMTPTRFAE+IEKNLKSASSKT VHIRPKSWIEEQEMGSFLSVAKGSEEP
Sbjct: 199 ARHLMESPANEMTPTRFAEIIEKNLKSASSKTKVHIRPKSWIEEQEMGSFLSVAKGSEEP 258
Query: 881 PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSTIVS 1060
PVFLEIHY GSP+A++ PLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS IVS
Sbjct: 259 PVFLEIHYMGSPNATEAPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICSAIVS 318
Query: 1061 AAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA 1240
AAKL+LPIN++GLAPLCENMPSGKANKPGDVVRA+NGKTIQVDNTDAEGRLILADALCYA
Sbjct: 319 AAKLNLPINIIGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYA 378
Query: 1241 HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEHY 1420
HTFNPKVIINAATLTGAMD+ALGSGATGVFTNSSWLWNKLFEAS+ETGDRVWRMPLFEHY
Sbjct: 379 HTFNPKVIINAATLTGAMDVALGSGATGVFTNSSWLWNKLFEASVETGDRVWRMPLFEHY 438
Query: 1421 TKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHLDIAGVMTNKDEVPYPAQG 1600
T+Q++DCQLADVNN+GKYRSAGACTAAAFL+EFVTH KWAHLDIAGVMTNKDE+PY +G
Sbjct: 439 TRQVIDCQLADVNNLGKYRSAGACTAAAFLREFVTHTKWAHLDIAGVMTNKDEIPYLRKG 498
Query: 1601 MAGRPTRTLIEFLLXVSXDSA 1663
M+GRPTRTLIEFLL S DS+
Sbjct: 499 MSGRPTRTLIEFLLRFSKDSS 519
>ref|NP_998898.1| probable aminopeptidase NPEPL1 [Mus musculus].
Length = 524
Score = 137 bits (344), Expect = 3e-32
Identities = 96/298 (32%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Frame = +2
Query: 689 GQNLARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKG 868
G LA +++TP NEM F E I + K T IR + ++ + G V K
Sbjct: 177 GVRLAARIVDTPCNEMNTDIFLEEIIQVGKELGI-TPTIIRDEQ-LKTKGFGGIYGVGKA 234
Query: 869 SEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADMGGAATICS 1048
+ PP + + +PD + + +VGKGI +D+GG+SIK M M+ D GGAA +
Sbjct: 235 ALHPPALAILSH--TPDGATQTIAWVGKGIVYDTGGLSIKGKTTMPGMKRDCGGAAAVLG 292
Query: 1049 TIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNTDAEGRLILADA 1228
+A K NL + L EN A +P D+ +GKT++++NTDAEGRL+LAD
Sbjct: 293 AFRAAIKQGFKDNLHAVFCLAENAVGPNATRPDDIHLLYSGKTVEINNTDAEGRLVLADG 352
Query: 1229 LCYA-HTFNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMP 1405
+ YA +I++ ATLTGA IA G V TNS+ +A + GD V +
Sbjct: 353 VSYACKDLGADIIVDMATLTGAQGIATGKYHAAVLTNSAEWEAACVKAGRKCGDLVHPLV 412
Query: 1406 L-----FEHYTKQIVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHP---KWAHLDIA 1555
F +T + D + N++ ++ + A F+ + W HLDIA
Sbjct: 413 YCPELHFSEFTSAVADMK----NSVADRDNSPSSCAGLFIASHIGFDWPGVWVHLDIA 466
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 61,029,124
Number of extensions: 1734534
Number of successful extensions: 6185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6165
Number of HSP's successfully gapped: 2
Length of query: 578
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 471
Effective length of database: 12,403,707
Effective search space: 5842145997
Effective search space used: 5842145997
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000861
(1736 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356918.1| PREDICTED: cytosol aminopeptidase-like [Sus ... 473 e-133
Alignment gi|XP_003128918.2| PREDICTED: condensin complex subunit 3 [Sus ... 322 5e-88
Alignment gi|NP_001116620.1| probable aminopeptidase NPEPL1 [Sus scrofa]. 139 4e-33
Alignment gi|XP_003356917.1| PREDICTED: protein FAM184B-like [Sus scrofa]. 114 1e-25
>ref|XP_003356918.1| PREDICTED: cytosol aminopeptidase-like [Sus scrofa].
Length = 407
Score = 473 bits (1218), Expect = e-133
Identities = 265/390 (67%), Positives = 285/390 (73%), Gaps = 14/390 (3%)
Frame = +2
Query: 158 SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 337
SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP
Sbjct: 18 SVRRFWGPGPDAANMTKGLVLGIYSKEKEDDAPQFTSAGENFDKLVSGKLREILNISGPP 77
Query: 338 LKAGKTRTFYGLHEDFSSXXXXXXXXXXXXXDDQENWHEGKENIRAAVAAGCRQIQDLEI 517
LKAGKTRTFYGLHEDFSS DDQENWHEGKENIRAAVAAGCRQIQDLEI
Sbjct: 78 LKAGKTRTFYGLHEDFSSVVVVGLGKKGAGVDDQENWHEGKENIRAAVAAGCRQIQDLEI 137
Query: 518 PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 697
PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN
Sbjct: 138 PSVEVDPCGDAQAAAEGAVLGLYEYDELKQKKKVVVSAKLHGSGDQEAWQRGVLFASGQN 197
Query: 698 LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEE 877
LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHI P +E+ + + + +E
Sbjct: 198 LARHLMETPANEMTPTRFAEVIEKNLKSASSKTDVHISPHDTRDERPSPTPPTPSTREKE 257
Query: 878 P----PVFLEIHYKGSPDASDPPLVFVGKGITFDSGGISIKASANMDLMRADM------- 1024
P +++ K SPD K T G +++ A D R+
Sbjct: 258 PYPAAQEQVQVLVKASPDPERQEHEKTDKTQTKTEPGGWMESQAYGDEQRSTKQLEVRAQ 317
Query: 1025 ---GGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVVRAKNGKTIQVDNT 1195
G A C LPI G ++ S G +V+AK GK+++VD T
Sbjct: 318 EGEGQRAETCPM--------LPIRYGG-----QHSGSRSTTHTGSLVKAK-GKSLKVDTT 363
Query: 1196 DAEGRLILADALCYAHTFNPKVIINAATLT 1285
DAEGRLILADALCYAHTFNPKVIINAATLT
Sbjct: 364 DAEGRLILADALCYAHTFNPKVIINAATLT 393
>ref|XP_003128918.2| PREDICTED: condensin complex subunit 3 [Sus scrofa].
Length = 817
Score = 322 bits (824), Expect = 5e-88
Identities = 160/163 (98%), Positives = 162/163 (99%)
Frame = +2
Query: 797 DVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG 976
DV ++PKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG
Sbjct: 563 DVTLKPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGKGITFDSGG 622
Query: 977 ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV 1156
ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV
Sbjct: 623 ISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGKANKPGDVV 682
Query: 1157 RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 1285
RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT
Sbjct: 683 RAKNGKTIQVDNTDAEGRLILADALCYAHTFNPKVIINAATLT 725
>ref|NP_001116620.1| probable aminopeptidase NPEPL1 [Sus scrofa].
Length = 523
Score = 139 bits (351), Expect = 4e-33
Identities = 106/330 (32%), Positives = 160/330 (48%), Gaps = 13/330 (3%)
Frame = +2
Query: 605 QKKKVVVSAKLHG--SGDQEAWQRGVLFAS--GQNLARHLMETPANEMTPTRFAEVIEKN 772
+KK VVV L G +G E L ++ G LA +++TP NEM F E I+K
Sbjct: 145 EKKTVVVEFFLVGQDNGPVEVSTLQCLTSATEGVRLAARIVDTPCNEMNTDAFLEEIKKV 204
Query: 773 LKSASSKTDVHIRPKSWIEEQEMGSFLSVAKGSEEPPVFLEIHYKGSPDASDPPLVFVGK 952
+ V IR + ++ + G V K + PP + + +PD + + +VGK
Sbjct: 205 GQDLGIAPTV-IRDEE-LKTRGFGGIYGVGKAAVHPPALAVLSH--TPDGATQTIAWVGK 260
Query: 953 GITFDSGGISIKASANMDLMRADMGGAATICSTIVSAAKLDLPINLVGLAPLCENMPSGK 1132
GI +D+GG+S+K M M+ D GGAA + +A + NL + L EN K
Sbjct: 261 GIVYDTGGLSMKGKTTMPGMKRDCGGAAAVLGAFRAAVRQGFKDNLHAVFCLAENSVGPK 320
Query: 1133 ANKPGDVVRAKNGKTIQVDNTDAEGRLILADALCYA-HTFNPKVIINAATLTGAMDIALG 1309
A +P D+ +GKT++++NTDAEGRL+LAD + YA +I++ ATLTGA IA G
Sbjct: 321 ATRPDDIHLLYSGKTVEINNTDAEGRLVLADGVSYACKDLGADIILDIATLTGAQGIATG 380
Query: 1310 SGATGVFTNSSWLWNKLFEASIETGDRVWRMPL-----FEHYTKQIVDCQLADVNNIGKY 1474
V TNS+ +A + GD V + F +T + D + N++
Sbjct: 381 KYHAAVLTNSAEWEAACVKAGRQCGDLVHPLVFCPELHFCEFTSAVADMK----NSVADR 436
Query: 1475 RSAGACTAAAFLKE---FVTHPKWAHLDIA 1555
++ + A F+ F W HLDIA
Sbjct: 437 DNSPSSCAGLFIASHLGFDWPGVWVHLDIA 466
>ref|XP_003356917.1| PREDICTED: protein FAM184B-like [Sus scrofa].
Length = 285
Score = 114 bits (286), Expect = 1e-25
Identities = 56/64 (87%), Positives = 56/64 (87%)
Frame = -2
Query: 808 DVDVCFTAGTFEILLNNFSKSGWRHLIGRRLHQVACQVLPRSKEDAPLPGLLIPTSMELG 629
DVDVCFTAGTFEILLNNFSKSGWRHLIG RLHQVACQVLPRSKED PLPGLLIPT G
Sbjct: 11 DVDVCFTAGTFEILLNNFSKSGWRHLIGGRLHQVACQVLPRSKEDTPLPGLLIPT----G 66
Query: 628 RHDH 617
R H
Sbjct: 67 RRKH 70
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,879,214
Number of extensions: 1359083
Number of successful extensions: 5015
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4999
Number of HSP's successfully gapped: 4
Length of query: 578
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 474
Effective length of database: 8,754,644
Effective search space: 4149701256
Effective search space used: 4149701256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000861
(1736 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 416 e-113
>Sscrofa_Chr08
|| Length = 148491826
Score = 416 bits (210), Expect = e-113
Identities = 252/264 (95%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 1474 cagatctgcaggagcatgtaccgctgcagcgttcctgaaagaatttgtgactcatcctaa 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416927 cagatctgcaggagcatgtaccgctgcagcgttcctgaaagaatttgtgactcatcctaa 12416986
Query: 1534 gtgggcgcacttggacatagcgggtgtgatgaccaacaaagacgaggttccgtaccctgc 1593
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12416987 gtgggcgcacttggacatagcgggtgtgatgaccaacaaagacgaggttccgta-cctgc 12417045
Query: 1594 gc-aaggcatggcggggaggcccacaaggaccctcatcgagttcctgcttncggtcagtc 1652
|| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct: 12417046 gcaaaggcatggcggggaggcccacgaggaccctcatcgagttcctgcttcggttcagtc 12417105
Query: 1653 angacagtgcttagatcagatggtctaaaattcccgtcatctgtctgaaatgggcagtag 1712
| |||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||
Sbjct: 12417106 aggacagtgcttagttcagagggtctaaaattccctccttctgtctgaaatgggcagtag 12417165
Query: 1713 agctccagaatacttttgaatgat 1736
||||||||||||||||||||||||
Sbjct: 12417166 agctccagaatacttttgaatgat 12417189
Score = 367 bits (185), Expect = 1e-98
Identities = 185/185 (100%)
Strand = Plus / Minus
Query: 25 aaagcggggctcctaggagcgcgcccgctctccatgcgccacgtgctcgttggagggcgg 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387845 aaagcggggctcctaggagcgcgcccgctctccatgcgccacgtgctcgttggagggcgg 12387786
Query: 85 tgcggggggccgagccgaaaagatgttcttgctgcctcttccggctgctgcgcgagtcgc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387785 tgcggggggccgagccgaaaagatgttcttgctgcctcttccggctgctgcgcgagtcgc 12387726
Query: 145 cgtccgacagctgagcgtgaggcgtttctggggacccggtccagacgctgcaaacatgac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387725 cgtccgacagctgagcgtgaggcgtttctggggacccggtccagacgctgcaaacatgac 12387666
Query: 205 gaagg 209
|||||
Sbjct: 12387665 gaagg 12387661
Score = 319 bits (161), Expect = 3e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 809 agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409264 agacccaagtcttggattgaggaacaggaaatgggatcattcctgagtgtggccaaaggg 12409205
Query: 869 tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409204 tccgaagagcctccagtcttcctggaaattcactacaaaggcagcccagacgcaagtgac 12409145
Query: 929 ccacccctggtgtttgtcgggaagggaattacctttgacag 969
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409144 ccacccctggtgtttgtcgggaagggaattacctttgacag 12409104
Score = 317 bits (160), Expect = 1e-83
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 482 gcagccgggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381219 gcagccgggtgcagacagattcaggacctggagatcccgtcggtggaggtggacccctgc 12381160
Query: 542 ggagacgcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12381159 ggagacgcccaggcggccgcggaaggagcggtgctcgggctctacgagtacgacgagctg 12381100
Query: 602 aagcagaaaaagaaggtggtcgtgtcggccaagctccatggaag 645
|||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 12381099 aagcagaaaaagaaggtggtcgtgtcggccaagctccacggaag 12381056
Score = 315 bits (159), Expect = 4e-83
Identities = 165/167 (98%)
Strand = Plus / Minus
Query: 644 agtggggatcaggaggcctggcagaggggcgtcctctttgcttctgggcagaacctggca 703
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 12379875 agtggggatcaggaggcctggcagaggggtgtcctctttgcttctgggcagaacctggca 12379816
Query: 704 cgccacctgatggagacgcctgccaatgagatgacgccaaccagatttgctgaagttatt 763
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 12379815 cgccacctgatggagacgcccgccaatgagatgacgccaaccagatttgctgaagttatt 12379756
Query: 764 gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 810
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379755 gagaagaatctcaaaagtgccagcagtaaaacagacgtccacatcag 12379709
Score = 250 bits (126), Expect = 2e-63
Identities = 129/130 (99%)
Strand = Plus / Minus
Query: 967 cagtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatggg 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403729 cagtggcggcatctctatcaaggcgtctgcgaacatggacctcatgagggcggacatggg 12403670
Query: 1027 cggagctgccaccatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaa 1086
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12403669 cggagctgccactatctgttccaccatcgtgtctgctgccaagctcgacctgcccatcaa 12403610
Query: 1087 cctcgtcggt 1096
||||||||||
Sbjct: 12403609 cctcgtcggt 12403600
Score = 222 bits (112), Expect = 5e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1365 aggccagcattgaaacgggagaccgggtctggaggatgcccctctttgaacactacacta 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416357 aggccagcattgaaacgggagaccgggtctggaggatgcccctctttgaacactacacta 12416416
Query: 1425 aacagattgtagattgccagcttgctgatgttaataacattgggaaatacag 1476
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12416417 aacagattgtagattgccagcttgctgatgttaataacattgggaaatacag 12416468
Score = 218 bits (110), Expect = 8e-54
Identities = 116/118 (98%)
Strand = Plus / Minus
Query: 207 agggccttgttttaggaatctacagcaaagaaaaagaagatgatgcaccccagtttacaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12384567 agggccttgttttaggaatctacagcaaagaaaaagaagatgatgcaccccagtttacaa 12384508
Query: 267 gtgcaggagagaattttgataaattggtgtctggaaagctgagagaaattttgaacat 324
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12384507 gtgcgggagagaattttgataaattggtgtctggaaagctgagagaaatcttgaacat 12384450
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 378 aggacttctccagcgtggtggtggttggcctcggcaaaaagggagccggagttgatgacc 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382421 aggacttctccagcgtggtggtggttggcctcggcaaaaagggagccggagttgatgacc 12382362
Query: 438 aggagaactggcacgaaggcaaagaaaacatcagagccgctgtcgcag 485
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12382361 aggagaactggcacgaaggcaaagaaaacatcagagccgctgtcgcag 12382314
Score = 206 bits (104), Expect = 3e-50
Identities = 107/108 (99%)
Strand = Plus / Minus
Query: 1181 caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12400889 caggtggacaacaccgacgccgagggcagactcatcctggccgacgcgctctgctacgcg 12400830
Query: 1241 cacacttttaacccaaaggtcatcatcaatgccgccactctgacaggt 1288
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12400829 cacacttttaacccaaaggtcatcatcaatgccgccaccctgacaggt 12400782
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1094 ggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtc 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12402197 ggtttggcccctctttgtgaaaacatgcccagcgggaaggccaacaagcctggggatgtc 12402138
Query: 1154 gttagagccaagaacgggaagaccatccaggt 1185
||||||||||||||||||||||||||||||||
Sbjct: 12402137 gttagagccaagaacgggaagaccatccaggt 12402106
Score = 167 bits (84), Expect = 3e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1284 caggtgccatggatatagctttgggatccggtgccactggggtctttaccaattcttcct 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12414022 caggtgccatggatatagctttgggatccggtgccactggggtctttaccaattcttcct 12414081
Query: 1344 ggctgtggaacaagctcttcgagg 1367
||||||||||||||||||||||||
Sbjct: 12414082 ggctgtggaacaagctcttcgagg 12414105
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 325 atccggaccacccctgaaggcaggcaaaacccgaaccttttacggtctgcatgagg 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383156 atccggaccacccctgaaggcaggcaaaacccgaaccttttacggtctgcatgagg 12383101
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,557,942
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 13
Length of query: 1736
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1714
Effective length of database: 2,808,408,574
Effective search space: 4813612295836
Effective search space used: 4813612295836
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)