Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000866
(1065 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like... 206 2e-53
Alignment gi|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like... 206 2e-53
Alignment gi|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like... 206 2e-53
Alignment gi|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like is... 206 2e-53
Alignment gi|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus]. 204 1e-52
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 108 6e-24
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 108 6e-24
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 108 6e-24
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 108 6e-24
Alignment gi|NP_001073729.1| GTPase, IMAP family member 5-like [Bos tauru... 100 2e-21
>ref|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 310
Score = 206 bits (525), Expect = 2e-53
Identities = 104/161 (64%), Positives = 119/161 (73%)
Frame = +2
Query: 260 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 439
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 102 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 161
Query: 440 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXX 619
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV
Sbjct: 162 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 221
Query: 620 XXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 742
GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 222 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 262
>ref|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 298
Score = 206 bits (525), Expect = 2e-53
Identities = 104/161 (64%), Positives = 119/161 (73%)
Frame = +2
Query: 260 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 439
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 90 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 149
Query: 440 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXX 619
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV
Sbjct: 150 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 209
Query: 620 XXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 742
GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 210 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 250
>ref|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 310
Score = 206 bits (525), Expect = 2e-53
Identities = 104/161 (64%), Positives = 119/161 (73%)
Frame = +2
Query: 260 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 439
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 102 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 161
Query: 440 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXX 619
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV
Sbjct: 162 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 221
Query: 620 XXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 742
GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 222 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 262
>ref|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 298
Score = 206 bits (525), Expect = 2e-53
Identities = 104/161 (64%), Positives = 119/161 (73%)
Frame = +2
Query: 260 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 439
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++AH +V
Sbjct: 90 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVV 149
Query: 440 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXX 619
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV
Sbjct: 150 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVGELMGLVE 209
Query: 620 XXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 742
GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 210 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 250
>ref|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus].
Length = 294
Score = 204 bits (518), Expect = 1e-52
Identities = 103/161 (63%), Positives = 118/161 (73%)
Frame = +2
Query: 260 EVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIV 439
EVA+ DP KERGRCY VTQLGRFTAQD QAWRGVKALFG G++A +V
Sbjct: 90 EVAQADPGFKERGRCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGIAARAVV 149
Query: 440 VFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXX 619
VFTR+EDL GSLQ YVRD++N+ALR+LVAECGGR CAF+NRA E+EAQV
Sbjct: 150 VFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNRAADGEREAQVRELMGLVE 209
Query: 620 XXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQK 742
GGAPYTNDVY LAQ LGG+SPEERLR+VAER+A +
Sbjct: 210 ELVRDHGGAPYTNDVYRLAQTLGGLSPEERLRRVAERLAAR 250
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 108 bits (271), Expect = 6e-24
Identities = 68/175 (38%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 251 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 427
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 99 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 158
Query: 428 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXX 607
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+
Sbjct: 159 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 218
Query: 608 XXXXXXXXXXGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 751
G TN+++ AQ L G L KV +VA+++QG
Sbjct: 219 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 273
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 307
Score = 108 bits (271), Expect = 6e-24
Identities = 68/175 (38%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 251 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 427
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 85 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 144
Query: 428 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXX 607
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+
Sbjct: 145 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 204
Query: 608 XXXXXXXXXXGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 751
G TN+++ AQ L G L KV +VA+++QG
Sbjct: 205 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 259
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 108 bits (271), Expect = 6e-24
Identities = 68/175 (38%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 251 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 427
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 99 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 158
Query: 428 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXX 607
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+
Sbjct: 159 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 218
Query: 608 XXXXXXXXXXGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 751
G TN+++ AQ L G L KV +VA+++QG
Sbjct: 219 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 273
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 108 bits (271), Expect = 6e-24
Identities = 68/175 (38%), Positives = 87/175 (49%), Gaps = 8/175 (4%)
Frame = +2
Query: 251 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 427
P E D + E G CY VTQLGRFT QD A VK +FG G
Sbjct: 85 PIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAER 144
Query: 428 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXX 607
+ +++FT KEDL GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+
Sbjct: 145 YMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLM 204
Query: 608 XXXXXXXXXXGGAPYTNDVYHLAQAL-------GGVSPEERLRKVAERVAQKQQG 751
G TN+++ AQ L G L KV +VA+++QG
Sbjct: 205 AVIEGLEQEHQGVFLTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 259
>ref|NP_001073729.1| GTPase, IMAP family member 5-like [Bos taurus].
Length = 297
Score = 100 bits (249), Expect = 2e-21
Identities = 66/174 (37%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Frame = +2
Query: 251 PCSEVARTDPDCKER-GRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSA 427
P E D + E G CY VTQLG FT QD A VK +FG G
Sbjct: 74 PIFESRAQDQEVYENIGACYLLSVPGPHVLLLVTQLGHFTKQDVVAMTRVKEVFGAGAER 133
Query: 428 HTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXX 607
+ +++FT KEDLA GSL +Y+ +++N LR LV +C R CAFNN A+G EQ Q+
Sbjct: 134 YMVILFTHKEDLAGGSLDEYMANTDNLRLRSLVQKCRRRYCAFNNWASGDEQRGQLAQLM 193
Query: 608 XXXXXXXXXXGGAPYTNDVYHLAQAL----GGVSPEERLR---KVAERVAQKQQ 748
GA TN+++ AQ L GG E + R KV +VA+++Q
Sbjct: 194 AVIEGLEREHQGAFLTNELFFDAQMLQQMGGGAHGEGQRRYLDKVRLQVAKQKQ 247
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,090,834
Number of extensions: 849801
Number of successful extensions: 3778
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 3764
Number of HSP's successfully gapped: 24
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000866
(1065 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 164 2e-40
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 122 4e-28
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 121 1e-27
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 98 2e-20
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 89 9e-18
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 78 2e-14
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 76 5e-14
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 164 bits (414), Expect = 2e-40
Identities = 87/160 (54%), Positives = 102/160 (63%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
+E R D C ERGRCY VTQLGRFTAQD+QA RGV+ LFG GV A +
Sbjct: 151 AEGRRADRGCAERGRCYLLSAPGPHALLLVTQLGRFTAQDEQAVRGVRELFGPGVLARAV 210
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
VVFTR+EDLA S DYVR ++N+ALR LVAECGGRVCA +NRA G E+EAQ
Sbjct: 211 VVFTRREDLAGASPHDYVRATDNRALRALVAECGGRVCALDNRAEGAEREAQAGELLALA 270
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVA 736
AP+TNDVY LA L G +P+ LR+V ER+A
Sbjct: 271 ARLAREHADAPFTNDVYRLAAELRGAAPDGGLRRVCERLA 310
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 122 bits (307), Expect = 4e-28
Identities = 68/148 (45%), Positives = 82/148 (55%)
Frame = +2
Query: 242 RKSPCSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGV 421
++ P A+T K G CY VT LGRFTAQD A R VK +FG G
Sbjct: 99 KEHPGGRHAQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGA 158
Query: 422 SAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTX 601
H +V+FT KEDLA SL DY+ D++N +LR LV ECG R CAFNNRATG EQ Q+
Sbjct: 159 MRHAVVLFTHKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLAR 218
Query: 602 XXXXXXXXXXXXGGAPYTNDVYHLAQAL 685
GGA Y+ND++ AQ L
Sbjct: 219 LMAVVERLERETGGAFYSNDLFFQAQLL 246
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 121 bits (304), Expect = 1e-27
Identities = 67/140 (47%), Positives = 79/140 (56%)
Frame = +2
Query: 266 ARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVF 445
A+T K G CY VT LGRFTAQD A R VK +FG G H +V+F
Sbjct: 363 AQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLF 422
Query: 446 TRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXX 625
T KEDLA SL DY+ D++N +LR LV ECG R CAFNNRATG EQ Q+
Sbjct: 423 THKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERL 482
Query: 626 XXXXGGAPYTNDVYHLAQAL 685
GGA Y+ND++ AQ L
Sbjct: 483 ERETGGAFYSNDLFFQAQLL 502
Score = 119 bits (297), Expect = 6e-27
Identities = 68/151 (45%), Positives = 83/151 (54%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
SE +D KE RCY VTQLGRFT QDQQ + +K +FG+ V HTI
Sbjct: 83 SERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDVMRHTI 142
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
V+FT KEDL SL DY+ D +N+AL +LVA CGGRVCAF+N ATG +++ QV
Sbjct: 143 VLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRDDQVKELMALM 202
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEER 709
G YTN +Y L V ER
Sbjct: 203 EDLVLERRGEHYTNGLYGLVTECESVWSRER 233
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 97.8 bits (242), Expect = 2e-20
Identities = 56/151 (37%), Positives = 80/151 (52%)
Frame = +2
Query: 275 DPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRK 454
D CKE RC V QLGR+T ++Q+ +KA+FG H I++FTRK
Sbjct: 75 DTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKPALKHMIMLFTRK 134
Query: 455 EDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXX 634
++L + SL D++ +S + L+ + ECG R CAFNNRA E+EAQV
Sbjct: 135 DNLEDQSLSDFI-ESADVKLKNITKECGDRYCAFNNRAKEAEKEAQVQELVELIEQMVQS 193
Query: 635 XGGAPYTNDVYHLAQALGGVSPEERLRKVAE 727
GGA +++D+Y EERL++ AE
Sbjct: 194 NGGAYFSDDIYK--------DTEERLKRKAE 216
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 88.6 bits (218), Expect = 9e-18
Identities = 43/114 (37%), Positives = 71/114 (62%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
V QLG FT +D++A + ++ +FG+ V +TIV+FTRKEDL E + DY++++EN+ L+ +
Sbjct: 590 VFQLGWFTQEDKRAVKELETIFGEEVLKYTIVLFTRKEDL-EVDIADYIKNAENRTLQNI 648
Query: 524 VAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGAPYTNDVYHLAQAL 685
+ CGGR+CAFNN+ TG +E Q GG Y ++++++
Sbjct: 649 IKRCGGRICAFNNKETGQAREDQAAVLLTMANQLIESHGGHGYPQKWENISKSI 702
Score = 68.9 bits (167), Expect = 8e-12
Identities = 37/99 (37%), Positives = 54/99 (54%)
Frame = +2
Query: 299 RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSL 478
RC V +G + +D++ GV+ +FG + IVVFTRK+DL S+
Sbjct: 146 RCLELCAPSLHVLLLVIAIGCYELEDKEVVCGVQEVFGAEARRYMIVVFTRKDDLEGDSV 205
Query: 479 QDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQV 595
QDY+ + +LR+LV CGGR CA NN+ + E+ QV
Sbjct: 206 QDYIEGLD--SLRELVENCGGRYCALNNKGSEEERVGQV 242
Score = 59.3 bits (142), Expect = 6e-09
Identities = 31/83 (37%), Positives = 51/83 (61%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VT LG F+ +D+ ++A FGD + I++FTRKEDL + L+ +++ S + AL +L
Sbjct: 390 VTPLGSFSKKDEVVLDTLQASFGDKFVEYLIILFTRKEDLGDQDLEMFLK-SRSTALCKL 448
Query: 524 VAECGGRVCAFNNRATGPEQEAQ 592
+ +C R C F+ R T E++ Q
Sbjct: 449 IKKCKDRYCVFSYRVTREEEQHQ 471
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 77.8 bits (190), Expect = 2e-14
Identities = 39/69 (56%), Positives = 50/69 (72%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VTQLGRFT +D+QA RG++ FG GV AHT++VFTR+EDL GSL++YVR ++N L
Sbjct: 187 VTQLGRFTEEDRQAVRGLQEAFGVGVLAHTVLVFTRREDLGGGSLEEYVRRTDNLHPALL 246
Query: 524 VAECGGRVC 550
A C R C
Sbjct: 247 DAVCARRHC 255
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 76.3 bits (186), Expect = 5e-14
Identities = 43/132 (32%), Positives = 66/132 (50%)
Frame = +2
Query: 284 CKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 463
C+E C V LGR+T ++++A + +FG + I++FTRK+DL
Sbjct: 101 CREIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQMFGPRARRYMILLFTRKDDL 160
Query: 464 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGG 643
QDY++D+ ++ +++LV R C FNNRATG EQEAQ G
Sbjct: 161 DGMHFQDYLKDA-SEDIQELVDMFRDRYCVFNNRATGTEQEAQRMQLLTLVQRVVMENEG 219
Query: 644 APYTNDVYHLAQ 679
YTN ++ A+
Sbjct: 220 GCYTNKMFQKAE 231
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,528,357
Number of extensions: 871008
Number of successful extensions: 4033
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4023
Number of HSP's successfully gapped: 10
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000866
(1065 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 187 1e-47
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 129 3e-30
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 110 3e-24
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 97 3e-20
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 94 2e-19
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 94 2e-19
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 82 6e-16
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 75 8e-14
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 187 bits (475), Expect = 1e-47
Identities = 102/186 (54%), Positives = 123/186 (66%), Gaps = 4/186 (2%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
S+V++TDP C+ERG CY VTQLGRFTAQDQQA R V+ +FG+ V +
Sbjct: 89 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMV 148
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
+VFTRKEDLA GSL DYV ++EN+ALR+LVAECGGRVCAF+NRATG EQEAQV
Sbjct: 149 IVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMV 208
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ----GCCLQRFLCEKP 784
GA Y+N+VY LAQ L PEERLR+VAERVA + Q G L L +
Sbjct: 209 EGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAARVQRRPWGAWLSARLWKWL 268
Query: 785 KAQRTW 802
K+ R+W
Sbjct: 269 KSPRSW 274
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 129 bits (325), Expect = 3e-30
Identities = 70/146 (47%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
KE RCY VTQLGR+T+QDQQA + VK +FG+ HTIV+FT KEDL
Sbjct: 93 KEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGA 646
GSL DY+ DS+N+AL +LVA CGGR+CAFNNRA G Q+ QV G
Sbjct: 153 GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGD 212
Query: 647 PYTNDVYHLAQ--ALGGVSPEERLRK 718
YTN +Y L Q G V +ER+++
Sbjct: 213 HYTNGLYSLIQRSKCGPVGSDERVKE 238
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 110 bits (274), Expect = 3e-24
Identities = 64/136 (47%), Positives = 78/136 (57%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VTQLGRFT +DQQ R ++ +FG GV HTI+VFTRKEDLA GSL+DYVR++ NQAL L
Sbjct: 129 VTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKEDLAGGSLEDYVRETNNQALAWL 188
Query: 524 VAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGAPYTNDVYHLAQALGGVSPE 703
R C FNNRA G EQEAQ+ G Y+N Y Q
Sbjct: 189 DVTLARRHCGFNNRAQGEEQEAQLRELMEKVEAIMWENEGDYYSNKAYQYTQ------QN 242
Query: 704 ERLRKVAERVAQKQQG 751
RL+++ ER + QG
Sbjct: 243 FRLKELQERQVSQGQG 258
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 96.7 bits (239), Expect = 3e-20
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
+E RC V QLGRFT +D+ A ++A+FG + + I++FTRKEDL
Sbjct: 512 EEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKEDLG 571
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXG-- 640
G+L+D++++S+N+ALR++ +CG RVCAFNN+ TG QE QV G
Sbjct: 572 AGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQETQVKALLTKVNDLRKESGWS 631
Query: 641 GAPYTND-VYHLAQALGGVSPEERLRK 718
G P+T + V L + + +S E+L K
Sbjct: 632 GYPHTQENVSKLIKNVQEMSQAEKLLK 658
Score = 73.2 bits (178), Expect = 4e-13
Identities = 40/136 (29%), Positives = 67/136 (49%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
V +G FT +D++ +G++ +FG H I+VFTRK+DL + LQD++ +N+ L+QL
Sbjct: 100 VIAIGHFTREDEETAKGIQQVFGAEARRHIIIVFTRKDDLGDDLLQDFI--EKNKPLKQL 157
Query: 524 VAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGAPYTNDVYHLAQALGGVSPE 703
V + GR C FNN+ +++ G P YH+ G +
Sbjct: 158 VQDYEGRYCIFNNKTNSKDEQITQVLELLRKVESLVNTNGGP-----YHVNFKTEGSRFQ 212
Query: 704 ERLRKVAERVAQKQQG 751
+ + + A + K QG
Sbjct: 213 DCVNEAASQEGDKPQG 228
Score = 62.0 bits (149), Expect = 9e-10
Identities = 33/83 (39%), Positives = 50/83 (60%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VT LG +T D+ ++ FG+ + I++ TRKEDL + L ++R+S N+AL L
Sbjct: 330 VTPLGFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFLRNS-NKALYGL 388
Query: 524 VAECGGRVCAFNNRATGPEQEAQ 592
+ +C R AFN RATG E++ Q
Sbjct: 389 IQKCKNRYSAFNYRATGEEEQRQ 411
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 94.0 bits (232), Expect = 2e-19
Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
K G CY V QLGRFTAQD A R VK +FG G H +++FT KEDL
Sbjct: 302 KNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLG 361
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGA 646
+L DYV +++N +L+ LV EC R CAFNN + EQ Q G+
Sbjct: 362 GQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGS 421
Query: 647 PYTNDVY---HLAQALGGVSPEERLRKVAERV 733
++ND++ L Q G + +E R+ +V
Sbjct: 422 FHSNDLFLDAQLLQRTGAGACQEDYRQYQAKV 453
Score = 55.1 bits (131), Expect = 1e-07
Identities = 26/45 (57%), Positives = 30/45 (66%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWR 391
S+V++TDP C+ERG CY VTQLGRFTAQDQQA R
Sbjct: 89 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVR 133
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 94.0 bits (232), Expect = 2e-19
Identities = 56/152 (36%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
K G CY V QLGRFTAQD A R VK +FG G H +++FT KEDL
Sbjct: 98 KNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLG 157
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGA 646
+L DYV +++N +L+ LV EC R CAFNN + EQ Q G+
Sbjct: 158 GQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGS 217
Query: 647 PYTNDVY---HLAQALGGVSPEERLRKVAERV 733
++ND++ L Q G + +E R+ +V
Sbjct: 218 FHSNDLFLDAQLLQRTGAGACQEDYRQYQAKV 249
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 82.4 bits (202), Expect = 6e-16
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 2/153 (1%)
Frame = +2
Query: 275 DPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRK 454
D CKE RC V LGR+T ++Q+ +KA+FG H +++FTRK
Sbjct: 75 DTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMKHMVILFTRK 134
Query: 455 EDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RATGPEQEAQVTXXXXXXXXXX 628
E+L S D++ D++ L+ +V ECG R CAF+N + + E+E+QV
Sbjct: 135 EELEGQSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELVELIEKMV 193
Query: 629 XXXGGAPYTNDVYHLAQALGGVSPEERLRKVAE 727
GA +++D+Y EERL++ E
Sbjct: 194 QCNEGAYFSDDIYK--------DTEERLKQREE 218
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 75.5 bits (184), Expect = 8e-14
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
KE RC V LGR+T ++ +A + +FG+ + I++FTRK+DL
Sbjct: 101 KEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLG 160
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGA 646
+ +L DY+R++ + ++ L+ G R CA NN+ATG EQEAQ
Sbjct: 161 DTNLHDYLREAP-EDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEG 219
Query: 647 PYTNDVYHLA--------QALGGV--------------SPEERLRKVAERVAQKQQGCCL 760
YTN +Y A QA+ + EE++RK+ ++V Q+++ +
Sbjct: 220 CYTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREEYEEKIRKLEDKVEQEKRKKQM 279
Query: 761 QRFLCEK 781
++ L E+
Sbjct: 280 EKKLAEQ 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,798,108
Number of extensions: 854922
Number of successful extensions: 3939
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3902
Number of HSP's successfully gapped: 11
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000866
(1065 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 164 1e-40
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 164 1e-40
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 117 2e-26
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 117 2e-26
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 94 2e-19
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 93 4e-19
Alignment gi|NP_997651.1| GTPase IMAP family member 8 [Mus musculus]. 93 4e-19
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 87 2e-17
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 76 4e-14
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 62 6e-10
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 164 bits (415), Expect = 1e-40
Identities = 87/164 (53%), Positives = 103/164 (62%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
SE+ RTDP C E RC+ VTQLGRFT QD QA VK LFG V A T+
Sbjct: 88 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMARTV 147
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
VVFTR+EDLA SLQDYV ++N+ALR LVAECGGRVCA NNRATG E+EAQ
Sbjct: 148 VVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLGMV 207
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ 748
GGA Y+N+VY L Q P++++ KVAE VA++ Q
Sbjct: 208 ACLVREHGGAHYSNEVYELVQDTRCADPQDQVAKVAEIVAERMQ 251
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 164 bits (415), Expect = 1e-40
Identities = 87/164 (53%), Positives = 103/164 (62%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
SE+ RTDP C E RC+ VTQLGRFT QD QA VK LFG V A T+
Sbjct: 88 SEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMARTV 147
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
VVFTR+EDLA SLQDYV ++N+ALR LVAECGGRVCA NNRATG E+EAQ
Sbjct: 148 VVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLGMV 207
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ 748
GGA Y+N+VY L Q P++++ KVAE VA++ Q
Sbjct: 208 ACLVREHGGAHYSNEVYELVQDTRCADPQDQVAKVAEIVAERMQ 251
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 117 bits (292), Expect = 2e-26
Identities = 73/186 (39%), Positives = 102/186 (54%), Gaps = 13/186 (6%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
S+ D D K+ G CY VTQLGRFTA+D A R VK +FG GV H I
Sbjct: 88 SKAQNQDMD-KDIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
V+FTRKEDL E SL+++V ++N++LR L ECG R CAFNNRA+G EQ+ Q+
Sbjct: 147 VLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQGQLAELMALV 206
Query: 617 XXXXXXXGGAPYTNDVYHLAQAL--GGVSPEER-----LRKVAERV------AQKQQGCC 757
G+ ++ND++ A+AL G S + L KV + V ++Q+G
Sbjct: 207 RRLEQECEGSFHSNDLFLHAEALLREGYSVHQEAYRCYLAKVRQEVEKQRRELEEQEGSW 266
Query: 758 LQRFLC 775
+ + +C
Sbjct: 267 IAKMIC 272
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 117 bits (292), Expect = 2e-26
Identities = 65/143 (45%), Positives = 86/143 (60%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
S+ D D K+ G CY VTQLGRFTA+D A R VK +FG GV H I
Sbjct: 84 SKAQNQDMD-KDIGDCYLLCAPGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMI 142
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
V+FTRKEDLAE SL+++V ++N++LR LV ECG R CAFNNRA+G EQ+ Q+
Sbjct: 143 VLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMALV 202
Query: 617 XXXXXXXGGAPYTNDVYHLAQAL 685
G+ ++ND++ A+ L
Sbjct: 203 RRLEQECEGSFHSNDLFLHAETL 225
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 94.0 bits (232), Expect = 2e-19
Identities = 44/84 (52%), Positives = 64/84 (76%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
V Q+GR+TA+DQ R ++ +FG+ + A+TI+VFTRKEDLAEGSL++Y++++ N++L L
Sbjct: 191 VIQVGRYTAEDQAVARCLQEIFGNTILAYTILVFTRKEDLAEGSLEEYIQENNNKSLDVL 250
Query: 524 VAECGGRVCAFNNRATGPEQEAQV 595
C R C FNN+A G EQEAQ+
Sbjct: 251 DVACERRHCGFNNKAQGDEQEAQL 274
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 92.8 bits (229), Expect = 4e-19
Identities = 41/84 (48%), Positives = 61/84 (72%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
V QLGRFT +D+ ++A F + + + IV+FTRKEDL +G L DY +++N+AL+++
Sbjct: 568 VLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKI 627
Query: 524 VAECGGRVCAFNNRATGPEQEAQV 595
+ +C GRVCAFNN+ TG +QE QV
Sbjct: 628 LKKCNGRVCAFNNKETGEDQETQV 651
Score = 61.2 bits (147), Expect = 1e-09
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VT +G +T +D++ G+ G H IVVFTR+++L E SL +Y+ E +L++L
Sbjct: 138 VTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKE--SLKEL 195
Query: 524 VAECGG-RVCAFNNRATGPEQEAQV 595
+ G R C FNN+A ++E QV
Sbjct: 196 IKNIGSRRCCTFNNKADKKQRELQV 220
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VT LG D + +K +FG+ + TIV+FTRKED + +L ++ EN AL L
Sbjct: 368 VTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFEDQALDKVIK--ENDALYNL 425
Query: 524 VAECGGRVCAFNNRATGPEQEAQV 595
+ G R FN RA+ E+++QV
Sbjct: 426 TQKFGERYAIFNYRASVEEEQSQV 449
>ref|NP_997651.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 92.8 bits (229), Expect = 4e-19
Identities = 41/84 (48%), Positives = 61/84 (72%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
V QLGRFT +D+ ++A F + + + IV+FTRKEDL +G L DY +++N+AL+++
Sbjct: 568 VLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKI 627
Query: 524 VAECGGRVCAFNNRATGPEQEAQV 595
+ +C GRVCAFNN+ TG +QE QV
Sbjct: 628 LKKCNGRVCAFNNKETGEDQETQV 651
Score = 61.2 bits (147), Expect = 1e-09
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VT +G +T +D++ G+ G H IVVFTR+++L E SL +Y+ E +L++L
Sbjct: 138 VTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKE--SLKEL 195
Query: 524 VAECGG-RVCAFNNRATGPEQEAQV 595
+ G R C FNN+A ++E QV
Sbjct: 196 IKNIGSRRCCTFNNKADKKQRELQV 220
Score = 56.6 bits (135), Expect = 3e-08
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VT LG D + +K +FG+ + TIV+FTRKED + +L ++ EN AL L
Sbjct: 368 VTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFEDQALDKVIK--ENDALYNL 425
Query: 524 VAECGGRVCAFNNRATGPEQEAQV 595
+ G R FN RA+ E+++QV
Sbjct: 426 TQKFGERYAIFNYRASVEEEQSQV 449
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 87.4 bits (215), Expect = 2e-17
Identities = 52/153 (33%), Positives = 76/153 (49%)
Frame = +2
Query: 269 RTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFT 448
+ + C E RC V QL RFT ++Q+ +KA+FG+ V + IV+FT
Sbjct: 73 KLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEEVMKYMIVLFT 132
Query: 449 RKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXX 628
RK+DL + SL D++ DS+ L+ ++ ECG R A NN+A E+E QV
Sbjct: 133 RKDDLEDQSLSDFIADSDTN-LKSIIKECGNRCLAINNKAERAERETQVQELMGLVETLV 191
Query: 629 XXXGGAPYTNDVYHLAQALGGVSPEERLRKVAE 727
GG +++ VY A E RL+K E
Sbjct: 192 QNNGGLYFSHPVYKDA--------ERRLKKQVE 216
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 76.3 bits (186), Expect = 4e-14
Identities = 41/128 (32%), Positives = 66/128 (51%)
Frame = +2
Query: 284 CKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 463
C E RC V +L R+T ++Q+ +K LFG+ + I++FT KEDL
Sbjct: 78 CFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAALKYMIILFTHKEDL 137
Query: 464 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGG 643
+ SL ++V D+ + L ++++CG R AFNN+A EQE QV GG
Sbjct: 138 EDQSLDNFVSDA-GEKLNNIISQCGKRYLAFNNKAALDEQENQVQQLIELTEKMVAQNGG 196
Query: 644 APYTNDVY 667
+ +++ +Y
Sbjct: 197 SYFSDKIY 204
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 62.4 bits (150), Expect = 6e-10
Identities = 33/114 (28%), Positives = 59/114 (51%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
V LGR+T ++ +A + + +FG I++ TRK+DL + + +Y+ + + +++
Sbjct: 120 VVPLGRYTVEEHKATQKILDMFGKQARRFMILLLTRKDDLEDTDIHEYL-EKAPKFFQEV 178
Query: 524 VAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGAPYTNDVYHLAQAL 685
+ E R C FNNRA+G E+E Q GG +TN +Y A+ +
Sbjct: 179 MHEFQNRYCLFNNRASGAEKEEQKMQLLTLVQSMVRENGGRCFTNKMYESAECV 232
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,529,448
Number of extensions: 713545
Number of successful extensions: 3115
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 15
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000866
(1065 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 319 1e-87
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 270 1e-72
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 117 1e-26
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 99 3e-21
Alignment gi|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelia... 70 2e-12
Alignment gi|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like ... 70 2e-12
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 57 2e-08
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 319 bits (818), Expect = 1e-87
Identities = 158/183 (86%), Positives = 158/183 (86%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
SEVARTDPDCKERGRCY VTQLGRFTAQDQQAWRGVKALFGDGVSAHTI
Sbjct: 93 SEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 152
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVT
Sbjct: 153 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRLV 212
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 796
GGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR
Sbjct: 213 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 272
Query: 797 TWW 805
TWW
Sbjct: 273 TWW 275
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 270 bits (690), Expect = 1e-72
Identities = 142/186 (76%), Positives = 146/186 (78%), Gaps = 3/186 (1%)
Frame = +2
Query: 257 SEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 436
SEVARTDPDCKERGRCY VTQLGRFTAQDQQAWRGVKALFGDGVSAHTI
Sbjct: 89 SEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHTI 148
Query: 437 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXX 616
VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVT
Sbjct: 149 VVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRLV 208
Query: 617 XXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAERVA---QKQQGCCLQRFLCEKPK 787
GGAPYTNDVYHLAQALGGVSPEERLRKVAE+VA KQ+ L + P+
Sbjct: 209 EDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAEQVAGRQLKQRWGWLLASRWKWPE 268
Query: 788 AQRTWW 805
A TWW
Sbjct: 269 ALGTWW 274
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 117 bits (293), Expect = 1e-26
Identities = 63/131 (48%), Positives = 77/131 (58%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
+E RC+ VTQLGRFT +D+Q R VK LFG V HTIV+FTRKEDL
Sbjct: 138 EEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHTIVLFTRKEDLE 197
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGA 646
GSL Y+ S+N+AL +LVA CGGRVCAFNNRA G ++AQV G
Sbjct: 198 GGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDLIESLVRAKKGD 257
Query: 647 PYTNDVYHLAQ 679
YTN +Y ++
Sbjct: 258 CYTNQLYRQSE 268
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 99.4 bits (246), Expect = 3e-21
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +2
Query: 344 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 523
VTQLGRFT +DQ+ R ++ +FG GV AHTI+VFTRKEDL GSL++Y+R+++N+ L QL
Sbjct: 166 VTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQL 225
Query: 524 VAECGGRVCAFNNRATGPEQEAQV 595
C R C FNN+ G EQEAQ+
Sbjct: 226 DVICERRHCGFNNKVEGAEQEAQL 249
>ref|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelial-like [Sus scrofa].
Length = 767
Score = 70.1 bits (170), Expect = 2e-12
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Frame = +2
Query: 395 VKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RA 568
+KA+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 582 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRT 640
Query: 569 TGPEQEAQVTXXXXXXXXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAE 727
E+EAQ+ GA YT+ +Y +ERLR E
Sbjct: 641 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 685
>ref|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like [Sus scrofa].
Length = 208
Score = 70.1 bits (170), Expect = 2e-12
Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Frame = +2
Query: 395 VKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RA 568
+KA+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 23 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRT 81
Query: 569 TGPEQEAQVTXXXXXXXXXXXXXGGAPYTNDVYHLAQALGGVSPEERLRKVAE 727
E+EAQ+ GA YT+ +Y +ERLR E
Sbjct: 82 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 126
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like
[Sus scrofa].
Length = 315
Score = 56.6 bits (135), Expect = 2e-08
Identities = 51/170 (30%), Positives = 75/170 (44%)
Frame = +2
Query: 287 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 466
KE RC V LGR T Q QA + + G+ I + TRK+DL
Sbjct: 95 KEICRCMILTSPGXHALLLVIPLGR-TRQRAQASSKIXPV-GERAMQRMIXLVTRKDDLE 152
Query: 467 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTXXXXXXXXXXXXXGGA 646
+Y R++ ++++R+L+ + R C NNRATG E++ Q G
Sbjct: 153 GTDFHEYXREA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGER 211
Query: 647 PYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 796
YTN +Y ++ + EE R ER K + C EKPK+Q+
Sbjct: 212 YYTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQECE-----EKPKSQQ 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,370,659
Number of extensions: 549754
Number of successful extensions: 2616
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2611
Number of HSP's successfully gapped: 7
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000866
(1065 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 940 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 940 bits (474), Expect = 0.0
Identities = 480/482 (99%)
Strand = Plus / Plus
Query: 255 gctccgaagtcgcccggacagaccccgactgcaaggagagaggccgctgctacctgctcg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874231 gctccgaagtcgcccggacagaccccgactgcaaggagagaggccgctgctacctgctcg 6874290
Query: 315 cagcccccgggccccacgccctgctcctggtgacccagctgggccgcttcacggcccagg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874291 cagcccccgggccccacgccctgctcctggtgacccagctgggccgcttcacggcccagg 6874350
Query: 375 accagcaggcctggaggggggtgaaggcgctgttcggggacggggtctcggcgcacacga 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874351 accagcaggcctggaggggggtgaaggcgctgttcggggacggggtctcggcgcacacga 6874410
Query: 435 tcgtggtcttcacccgcaaggaggacctggcggagggctccctgcaggactacgtgcgcg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874411 tcgtggtcttcacccgcaaggaggacctggcggagggctccctgcaggactacgtgcgcg 6874470
Query: 495 acagcgagaaccaggcgctcaggcagctggtggccgagtgcgggggccgcgtctgcgcct 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874471 acagcgagaaccaggcgctcaggcagctggtggccgagtgcgggggccgcgtctgcgcct 6874530
Query: 555 ttaacaaccgcgccacgggtcccgagcaggaggcgcaggtgacggagctgctgaggctgg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874531 ttaacaaccgcgccacgggtcccgagcaggaggcgcaggtgacggagctgctgaggctgg 6874590
Query: 615 tggaggatctggtgagggaccgcggcggcgccccctacaccaacgacgtgtaccacctgg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874591 tggaggatctggtgagggaccgcggcggcgccccctacaccaacgacgtgtaccacctgg 6874650
Query: 675 cgcaggccctgggcggcgtgagcccggaggagaggctccgcaaggtggcggagcgagtgg 734
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 6874651 cgcaggccctgggcggcgtgagcccggaggagaggctccgcaaggtggccgagcaagtgg 6874710
Query: 735 ca 736
||
Sbjct: 6874711 ca 6874712
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 159 agttcccaggccaacaagcttaagctgggtccctgacacgctgagcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6872471 agttcccaggccaacaagcttaagctgggtccctgacacgctgagcaa 6872518
Score = 73.8 bits (37), Expect = 2e-10
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 319 ccccgggccccacgccctgctcctggtgacccagctgggccgcttcacg 367
|||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 6631213 ccccgggccccacgccgtcctcctggtgacacagctgggccgcttcacg 6631165
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,263,801
Number of extensions: 1400
Number of successful extensions: 1400
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1400
Number of HSP's successfully gapped: 3
Length of query: 1065
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1044
Effective length of database: 2,808,413,156
Effective search space: 2931983334864
Effective search space used: 2931983334864
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)