Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000881
(1069 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776804.1| 40S ribosomal protein SA [Bos taurus]. 555 e-158
Alignment gi|XP_002695310.1| PREDICTED: ribosomal protein SA-like [Bos ta... 270 2e-72
>ref|NP_776804.1| 40S ribosomal protein SA [Bos taurus].
Length = 295
Score = 555 bits (1431), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP+TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_002695310.1| PREDICTED: ribosomal protein SA-like [Bos taurus].
Length = 168
Score = 270 bits (690), Expect = 2e-72
Identities = 139/150 (92%), Positives = 142/150 (94%), Gaps = 2/150 (1%)
Frame = +2
Query: 221 YIINLKRTWE--KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT 394
Y +NL + + KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT
Sbjct: 13 YGMNLDQRFNICKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT 72
Query: 395 PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 574
PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN
Sbjct: 73 PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 132
Query: 575 NKGAHSVGLMWWMLAREVLRMRGTISREHP 664
NKGAHSVGLMWWMLAREVLRMRGTISR P
Sbjct: 133 NKGAHSVGLMWWMLAREVLRMRGTISRFIP 162
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,272,396
Number of extensions: 1144703
Number of successful extensions: 3534
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000881
(1069 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860746.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860712.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_534228.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_850029.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_533909.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860584.1| PREDICTED: similar to 40S ribosomal protein SA ... 551 e-157
Alignment gi|XP_860646.1| PREDICTED: similar to 40S ribosomal protein SA ... 549 e-156
Alignment gi|XP_866616.1| PREDICTED: similar to 40S ribosomal protein SA ... 543 e-155
Alignment gi|XP_866603.1| PREDICTED: similar to 40S ribosomal protein SA ... 543 e-155
>ref|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 14 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860746.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 13 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860712.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 12 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_534228.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 1 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_850029.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 2 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_533909.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 1 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860584.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 9 [Canis familiaris].
Length = 276
Score = 551 bits (1419), Expect = e-157
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP +GEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPE-------------------EGEWTAPAPEFTA 221
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 222 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 276
>ref|XP_860646.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 11 [Canis familiaris].
Length = 310
Score = 549 bits (1414), Expect = e-156
Identities = 275/310 (88%), Positives = 275/310 (88%), Gaps = 15/310 (4%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPT---------------EDWSAQPTTEDWSAAPTAQAT 937
TQPEVADWSEGVQVPSVPIQQFPT EDWSAQP TEDWSAAPTAQAT
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTGIGLALRVCPLKCVFEDWSAQPATEDWSAAPTAQAT 300
Query: 938 EWVGTTTEWS 967
EWVGTTTEWS
Sbjct: 301 EWVGTTTEWS 310
>ref|XP_866616.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 5 [Canis familiaris].
Length = 295
Score = 543 bits (1400), Expect = e-155
Identities = 270/295 (91%), Positives = 270/295 (91%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL YVDIAIPCNNKG HSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGVHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVL MRGTIS EHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLLMRGTISCEHPWEVMPDLYFYRDPEEIEKEEQATAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTE S
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTECS 295
>ref|XP_866603.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 4 [Canis familiaris].
Length = 295
Score = 543 bits (1400), Expect = e-155
Identities = 270/295 (91%), Positives = 270/295 (91%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL YVDIAIPCNNKG HSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGVHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVL MRGTIS EHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLLMRGTISCEHPWEVMPDLYFYRDPEEIEKEEQATAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTE S
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTECS 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,853,806
Number of extensions: 1143188
Number of successful extensions: 3726
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 3636
Number of HSP's successfully gapped: 37
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000881
(1069 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002286.2| 40S ribosomal protein SA [Homo sapiens]. 556 e-158
Alignment gi|NP_001012321.1| 40S ribosomal protein SA [Homo sapiens]. 556 e-158
>ref|NP_002286.2| 40S ribosomal protein SA [Homo sapiens].
Length = 295
Score = 556 bits (1432), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TT+WS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
>ref|NP_001012321.1| 40S ribosomal protein SA [Homo sapiens].
Length = 295
Score = 556 bits (1432), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TT+WS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,147,091
Number of extensions: 1129682
Number of successful extensions: 3627
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3607
Number of HSP's successfully gapped: 2
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000881
(1069 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086186.1| PREDICTED: 40S ribosomal protein SA-like [Mu... 555 e-158
Alignment gi|NP_035159.3| 40S ribosomal protein SA [Mus musculus]. 555 e-158
Alignment gi|XP_921694.1| PREDICTED: 40S ribosomal protein SA-like isofor... 527 e-150
>ref|XP_003086186.1| PREDICTED: 40S ribosomal protein SA-like [Mus musculus].
Length = 295
Score = 555 bits (1430), Expect = e-158
Identities = 273/295 (92%), Positives = 273/295 (92%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
>ref|NP_035159.3| 40S ribosomal protein SA [Mus musculus].
Length = 295
Score = 555 bits (1430), Expect = e-158
Identities = 273/295 (92%), Positives = 273/295 (92%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
>ref|XP_921694.1| PREDICTED: 40S ribosomal protein SA-like isoform 1 [Mus musculus].
Length = 295
Score = 527 bits (1357), Expect = e-150
Identities = 260/295 (88%), Positives = 264/295 (89%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MS AL+VLQMKEEDV KFLAAGTHLGGTNL+FQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSRALNVLQMKEEDVFKFLAAGTHLGGTNLEFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARA+VAIENP DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAVVAIENPPDVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVD+AIPCNNKGAHSVGLM WMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDMAIPCNNKGAHSVGLMKWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVL MRGTISREHPWEVMPDLYFYRDP FQGEWT PAPEFTA
Sbjct: 181 EVLCMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTTPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
QPEVA WSEGVQ PSVPIQQFP EDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVAHWSEGVQAPSVPIQQFPMEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,743,705
Number of extensions: 957791
Number of successful extensions: 3103
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3083
Number of HSP's successfully gapped: 3
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000881
(1069 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032223.1| 40S ribosomal protein SA [Sus scrofa]. 561 e-160
>ref|NP_001032223.1| 40S ribosomal protein SA [Sus scrofa].
Length = 295
Score = 561 bits (1445), Expect = e-160
Identities = 276/295 (93%), Positives = 276/295 (93%)
Frame = +2
Query: 83 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 262
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 263 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 442
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 443 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 622
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 623 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 802
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 803 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 967
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,849,041
Number of extensions: 769404
Number of successful extensions: 2355
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2343
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000881
(1069 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1580 0.0
Sscrofa_Chr17 1269 0.0
Sscrofa_Chr01 1172 0.0
Sscrofa_Chr03 940 0.0
Sscrofa_Chr12 932 0.0
gb|GL894387.2| Sus scrofa unplaced genomic scaffold ChrUScaf2271 844 0.0
Sscrofa_Chr14 829 0.0
Sscrofa_Chr09 823 0.0
Sscrofa_Chr02 613 e-173
Sscrofa_Chr04 597 e-168
>Sscrofa_Chr06
|| Length = 157765593
Score = 1580 bits (797), Expect = 0.0
Identities = 981/1036 (94%), Gaps = 11/1036 (1%)
Strand = Plus / Plus
Query: 5 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 64
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 113006061 cctttccgcgctgctcagaccggggtccatagggcgttgttcttgattcccgtcgtaact 113006120
Query: 65 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 124
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 113006121 taaagggaaactttcacaatgtccagagccctcgatgtcttgcaaatgaaagaggaggat 113006180
Query: 125 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 113006181 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaagg 113006240
Query: 185 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 244
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 113006241 gaacagtacatctacaaaaggaaaagtgatggcatctatgtcataaatctgcagagaacc 113006300
Query: 245 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 304
|||||||| |||||||||| |||||||||| | |||||||||||||||||||| ||||||
Sbjct: 113006301 tgggagaagcttctgttggtggctcgtgccgttgttgccattgaaaacccagctgatgtc 113006360
Query: 305 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 364
|||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 113006361 agtgtcatatcctccaggaacactggccagcgagctgtgct-----ttgctgctgctact 113006415
Query: 365 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113006416 ggagccactcctattgctggcctcttcactcctggaaccttcactaaccagatccaggca 113006475
Query: 425 gccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctc 484
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 113006476 gccttccgggagccgagacttctggttgttactgatcccagggctgaccaccagcctctc 113006535
Query: 485 acagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctg 544
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113006536 acagaggcctcttacgttaacctgcctgccattgctctgtgtaacacagactcacctctg 113006595
Query: 545 cgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatg 604
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 113006596 cgttatgtggacattgccatcccgtgcaacaaaaagggagctctctcagtgggtctgatg 113006655
Query: 605 tggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccca 664
|||||||||||| ||| ||||||||||||||||||||||| || |||| | |||||||||
Sbjct: 113006656 tggtggatgctcacccaggaagttctgcgcatgcgtggcatcacctcctgtgaacaccca 113006715
Query: 665 tgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagag 724
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113006716 tgggaagtcatgcctgacctctccttctacagagatcctgaagagattgaaaaggaagag 113006775
Query: 725 caggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 784
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113006776 caggcttcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 113006835
Query: 785 gctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtg 844
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 113006836 gctcctga--tcactgccactcaacctgaggtggcaaattggtccgaaggtgtgcaggtg 113006893
Query: 845 ccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaa 904
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113006894 ccttctgtgcccatccagcaattccctgctgaagattggagtgctcagcctaccactgaa 113006953
Query: 905 gattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtgg 964
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 113006954 gattggtctgcagttcccactgtgcaggccactgaatgggtaggaacagccactgagttg 113007013
Query: 965 tcttaa-ttcttccatgaactctt-attttctaaaaata-aaatgatttggatgtaaaat 1021
|||||| ||||||||||||||||| | |||||||||||| || || ||| || ||||||
Sbjct: 113007014 tcttaagttcttccatgaactcttaagtttctaaaaatagaagtgggttgaatataaaat 113007073
Query: 1022 -aacagtttctaaatt 1036
|||||||||||||||
Sbjct: 113007074 aaacagtttctaaatt 113007089
Score = 1580 bits (797), Expect = 0.0
Identities = 981/1036 (94%), Gaps = 11/1036 (1%)
Strand = Plus / Plus
Query: 5 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 64
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 113111723 cctttccgcgctgctcagaccggggtccatagggcgttgttcttgattcccgtcgtaact 113111782
Query: 65 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 124
|||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 113111783 taaagggaaactttcacaatgtccagagccctcgatgtcttgcaaatgaaagaggaggat 113111842
Query: 125 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 113111843 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaagg 113111902
Query: 185 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 244
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 113111903 gaacagtacatctacaaaaggaaaagtgatggcatctatgtcataaatctgcagagaacc 113111962
Query: 245 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 304
|||||||| |||||||||| |||||||||| | |||||||||||||||||||| ||||||
Sbjct: 113111963 tgggagaagcttctgttggtggctcgtgccgttgttgccattgaaaacccagctgatgtc 113112022
Query: 305 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 364
|||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 113112023 agtgtcatatcctccaggaacactggccagcgagctgtgct-----ttgctgctgctact 113112077
Query: 365 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113112078 ggagccactcctattgctggcctcttcactcctggaaccttcactaaccagatccaggca 113112137
Query: 425 gccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctc 484
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 113112138 gccttccgggagccgagacttctggttgttactgatcccagggctgaccaccagcctctc 113112197
Query: 485 acagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctg 544
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113112198 acagaggcctcttacgttaacctgcctgccattgctctgtgtaacacagactcacctctg 113112257
Query: 545 cgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatg 604
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 113112258 cgttatgtggacattgccatcccgtgcaacaaaaagggagctctctcagtgggtctgatg 113112317
Query: 605 tggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccca 664
|||||||||||| ||| ||||||||||||||||||||||| || |||| | |||||||||
Sbjct: 113112318 tggtggatgctcacccaggaagttctgcgcatgcgtggcatcacctcctgtgaacaccca 113112377
Query: 665 tgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagag 724
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 113112378 tgggaagtcatgcctgacctctccttctacagagatcctgaagagattgaaaaggaagag 113112437
Query: 725 caggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 784
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113112438 caggcttcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcca 113112497
Query: 785 gctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtg 844
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 113112498 gctcctga--tcactgccactcaacctgaggtggcaaattggtccgaaggtgtgcaggtg 113112555
Query: 845 ccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaa 904
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113112556 ccttctgtgcccatccagcaattccctgctgaagattggagtgctcagcctaccactgaa 113112615
Query: 905 gattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtgg 964
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct: 113112616 gattggtctgcagttcccactgtgcaggccactgaatgggtaggaacagccactgagttg 113112675
Query: 965 tcttaa-ttcttccatgaactctt-attttctaaaaata-aaatgatttggatgtaaaat 1021
|||||| ||||||||||||||||| | |||||||||||| || || ||| || ||||||
Sbjct: 113112676 tcttaagttcttccatgaactcttaagtttctaaaaatagaagtgggttgaatataaaat 113112735
Query: 1022 -aacagtttctaaatt 1036
|||||||||||||||
Sbjct: 113112736 aaacagtttctaaatt 113112751
Score = 474 bits (239), Expect = e-131
Identities = 616/745 (82%), Gaps = 35/745 (4%)
Strand = Plus / Minus
Query: 91 agccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaac 150
|||||| ||||||||||| || || || |||||| ||||||| | ||||||||||||
Sbjct: 134197925 agcccttgatgtcctgcatataaaggaagaggat---ctcaagtcctttgcagcaggaat 134197869
Query: 151 ccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaaaag 210
|||| | |||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 134197868 ccacttaggtggcactgaccttgacttccaagtggaacagtacatctataaaaggaaaag 134197809
Query: 211 tgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggctcg 270
| ||||| ||||||||||||| ||||||||||||||| ||| ||||||||||| ||||
Sbjct: 134197808 taatggcctctacatcataaacctgaagagaacctggaagatgcttctgttggcagctca 134197749
Query: 271 tgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatactgg 330
|| ||| | ||| || ||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 134197748 tgtcattgctgctatggaaaacccagctgatatcagtgtcatatcctccaggaacactgg 134197689
Query: 331 ccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccgctt 390
||| |||||||||||| |||||||||||||| ||||| |||
Sbjct: 134197688 ccaaggagctgtgctgacgtttgctgctgcca------------------ctggcttctt 134197647
Query: 391 cactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctggt 450
| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134197646 ccctcctggaaccttcgctaaccagatccaggcagctttccgggagccaagacttctgga 134197587
Query: 451 ggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcc 510
|||||| ||||||||||| ||||||| ||||| ||||||||||| || ||||||
Sbjct: 134197586 ggttaccaatcccagggcttcccaccagtctctcctagaggcctcttgcattcgcctgcc 134197527
Query: 511 taccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatcccgtg 570
| ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| | ||
Sbjct: 134197526 tgccattgctccgtgtaacacagactctcctctgcgttatgtggacattgctatctcatg 134197467
Query: 571 caacaacaagggagctcactcagtgggtc-tgatgtggtggatgctcgcccgggaagttc 629
||||||||||||||| |||| | |||| ||||||| || |||| ||||
Sbjct: 134197466 caacaacaagggagc-------atgggacatgat------gatgctcacctgggaggttc 134197420
Query: 630 tgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctctact 689
|| |||||| | |||||||| | ||||||||| ||| ||||||||||| | || ||
Sbjct: 134197419 tgagcatgctctgtgccatctcctgtgaacacccacaggaggtcatgcctgatcgctgct 134197360
Query: 690 tctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtga 749
||| |||||| ||||||| || ||||||| |||||||| ||||||||||| |||||||
Sbjct: 134197359 tcttgggagatcttgaagaggttaaaaaggaggagcaggcagcagctgagaaagctgtga 134197300
Query: 750 ccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactcaac 809
|||||||||||||||||||| ||||||| || |||||| ||||||||||||| | ||| |
Sbjct: 134197299 ccaaggaggaatttcagggtaaatggacggctccagcttctgagttcactgctattcagc 134197240
Query: 810 ctgaggtggcagattggtccgaagg 834
||||||||||||| ||||| |||||
Sbjct: 134197239 ctgaggtggcagactggtctgaagg 134197215
Score = 333 bits (168), Expect = 1e-88
Identities = 580/714 (81%), Gaps = 20/714 (2%)
Strand = Plus / Plus
Query: 104 ctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggc 163
||||||||||| || | ||| |||||||| |||||| ||| | || |||||| | ||||
Sbjct: 111604905 ctgcaaatgaaggaaggggaagtcctcaaattccttacagaggaaatccacctagatggc 111604964
Query: 164 accaaccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctac 223
||||||| ||||||||||| |||||| | | ||||| |||||| || |||||||||
Sbjct: 111604965 gccaacctcaacttccaaatgcaacagtcc--ccacaaagggaaaactggtggcatctat 111605022
Query: 224 atcataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgcc 283
|| ||| ||| || |||| ||||||||| ||||| || ||| ||||||| | | ||
Sbjct: 111605023 gtcgtaagtctaaaaagaatctgggagaaggttctg---gcagcttgtgccattgatacc 111605079
Query: 284 attgaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtg 343
||||||||| | | ||||||| |||||||||||| |||| ||||| |||| |||||||
Sbjct: 111605080 attgaaaactcgactgatgtcactgtcatatcctctaggagtactgaacagcaagctgtg 111605139
Query: 344 ctgaagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaacc 403
|| |||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 111605140 ctaaagtttgctgctgccactggagccactcctattgctcactgtgccgttcctggaact 111605199
Query: 404 ttcactaaccagatccaggcagccttccgggagccaagacttctggtggttactgatccc 463
||||||| |||||||| |||| ||||| ||||| |||||||||| |||||||||||||
Sbjct: 111605200 ttcactaggcagatccaagcaggcttccaggagcagagacttctgg-ggttactgatccc 111605258
Query: 464 agggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctg 523
||||||||||| |||||||||| ||||||||||||| |||| ||||||||
Sbjct: 111605259 agggctgaccagcagcctctca-----------tatgttaacctgcttacctttgctctg 111605307
Query: 524 tgtaacacagactcacctctgcgttatgtggacattgccatcccgtgcaa--caacaagg 581
|||||||||||||| ||||| | | | ||||||||||||| || ||||| ||||||||
Sbjct: 111605308 agtaacacagactcaactctgtgctctatggacattgccattccctgcaattcaacaagg 111605367
Query: 582 gagctcactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtg 641
|||||||||||||||||||||||||||||||| || |||||||||||| | || |||
Sbjct: 111605368 aagctcactcagtgggtctgatgtggtggatgccagct-gggaagttctgcccttgtgtg 111605426
Query: 642 gcaccatctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatc 701
|| | ||||||| || |||||| ||| |||||||| | ||||||||| ||| ||| |
Sbjct: 111605427 acatcctctcccgtgagcacccacaggaggtcatgccccatctctacttccacacagacc 111605486
Query: 702 ctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaat 761
| ||||||| |||| ||||||||||||| || ||| | || ||||||||||||||||||
Sbjct: 111605487 cggaagagactgaagaggaagagcaggctgccgctaaaaacactgtgaccaaggaggaat 111605546
Query: 762 ttcagggtgaatggactgcgccagctcctgagttcactgccactcaacctgagg 815
||| |||| ||||||| | | ||||||||| || ||||| ||| || ||||||
Sbjct: 111605547 ttcggggtaaatggacagttctagctcctgaatttactgctacttaaactgagg 111605600
Score = 103 bits (52), Expect = 2e-19
Identities = 152/180 (84%), Gaps = 4/180 (2%)
Strand = Plus / Minus
Query: 303 tcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcca 362
||||||||| |||||| |||| ||||||||| | ||||| | ||||||||||||| ||
Sbjct: 138656572 tcagtgtcacatcctctgggaacactggccagagggctgttccaaagtttgctgctgtca 138656513
Query: 363 ctggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccagg 422
| ||||| || |||||||||| | || || ||||||| || |||||||||||| |||| |
Sbjct: 138656512 c-ggagctacccctattgctg-ctgcctctctcctggcacgttcactaaccaggtccaag 138656455
Query: 423 cagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctc 482
||||||||| || |||| | ||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 138656454 cagccttccagg-gccacgtctt-tggtggttcctgatcccagggctgcccaccagcctc 138656397
>Sscrofa_Chr17
|| Length = 69701581
Score = 1269 bits (640), Expect = 0.0
Identities = 898/980 (91%), Gaps = 3/980 (0%)
Strand = Plus / Minus
Query: 6 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 65
||||| ||||| ||||||| ||||||||||||| ||||||| || |||| | |||||||
Sbjct: 35639978 ctttctgcgctacccagacaggggtccatacggtgttgttcccgactcccttggtaactt 35639919
Query: 66 aaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatg 125
||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 35639918 aaagggaaactttcacaatatctggagcccttgatgtcctgcaaatgaaagaggaggata 35639859
Query: 126 tcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatgg 185
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
Sbjct: 35639858 tcctcaaattccttgcagcagaaacccacctaagtggcaccaaccttgacttcccaatag 35639799
Query: 186 aacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacct 245
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 35639798 aacagtacatctaccaaaggaaaagtgatggcatctacatcataaatctgaagaaagcct 35639739
Query: 246 gggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtca 305
|||||||| || | |||| |||| |||||| ||||||| |||||||||||| ||||||
Sbjct: 35639738 gggagaaattt-taatggctgctcatgccattgttgccagtgaaaacccagctaatgtca 35639680
Query: 306 gtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccactg 365
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 35639679 gtgtcatatcctccaggaatactgctcagagagctgtgctgaagtttgctgctgccactg 35639620
Query: 366 gagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggcag 425
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||
Sbjct: 35639619 gagccactcctattgctggccgctttattcctggaaccctcactaaccagatccaggtag 35639560
Query: 426 ccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctca 485
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35639559 ccttctgggagccaagacttctggtggttactgatccaagggctgagcaccagcctctca 35639500
Query: 486 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgc 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35639499 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactctcctctgc 35639440
Query: 546 gttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgt 605
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 35639439 attacgtggacattgctatcccgtgcaacaacaagagagcttgctcagtgggtctgatat 35639380
Query: 606 ggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccat 665
||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct: 35639379 ggtgggtgcttgcccgggaagttccacgcatgtgtggcaccatctcctgtgaacacccag 35639320
Query: 666 gggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagc 725
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 35639319 aggaagtcatgcctgatctctacttcga-agagatcctgaagagattgaaaaggaagagc 35639261
Query: 726 aggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccag 785
|||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35639260 aggcagctgctgagaaggatgtgaccaaggaggaatttcagggtgaatggactgctccag 35639201
Query: 786 ctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtgc 845
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 35639200 ctcctgagttcactgctactcaacctgaggtggcagattggtctgaaggcctgcaggtgc 35639141
Query: 846 cttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaag 905
| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35639140 cctctgtgcccatccagcagttccctactgaagactggagtgctcagcctgccactgaag 35639081
Query: 906 attggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggt 965
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 35639080 attggtctgaagctcccacttctcaggccactgaatgggtaggaatgaccactgagtggt 35639021
Query: 966 cttaa-ttcttccatgaact 984
||||| ||||||||| ||||
Sbjct: 35639020 cttaagttcttccataaact 35639001
Score = 1269 bits (640), Expect = 0.0
Identities = 898/980 (91%), Gaps = 3/980 (0%)
Strand = Plus / Plus
Query: 6 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 65
||||| ||||| ||||||| ||||||||||||| ||||||| || |||| | |||||||
Sbjct: 35825021 ctttctgcgctacccagacaggggtccatacggtgttgttcccgactcccttggtaactt 35825080
Query: 66 aaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatg 125
||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 35825081 aaagggaaactttcacaatatctggagcccttgatgtcctgcaaatgaaagaggaggata 35825140
Query: 126 tcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatgg 185
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
Sbjct: 35825141 tcctcaaattccttgcagcagaaacccacctaagtggcaccaaccttgacttcccaatag 35825200
Query: 186 aacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacct 245
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 35825201 aacagtacatctaccaaaggaaaagtgatggcatctacatcataaatctgaagaaagcct 35825260
Query: 246 gggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtca 305
|||||||| || | |||| |||| |||||| ||||||| |||||||||||| ||||||
Sbjct: 35825261 gggagaaattt-taatggctgctcatgccattgttgccagtgaaaacccagctaatgtca 35825319
Query: 306 gtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccactg 365
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 35825320 gtgtcatatcctccaggaatactgctcagagagctgtgctgaagtttgctgctgccactg 35825379
Query: 366 gagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggcag 425
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||
Sbjct: 35825380 gagccactcctattgctggccgctttattcctggaaccctcactaaccagatccaggtag 35825439
Query: 426 ccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctca 485
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35825440 ccttctgggagccaagacttctggtggttactgatccaagggctgagcaccagcctctca 35825499
Query: 486 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgc 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35825500 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactctcctctgc 35825559
Query: 546 gttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgt 605
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 35825560 attacgtggacattgctatcccgtgcaacaacaagagagcttgctcagtgggtctgatat 35825619
Query: 606 ggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccat 665
||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct: 35825620 ggtgggtgcttgcccgggaagttccacgcatgtgtggcaccatctcctgtgaacacccag 35825679
Query: 666 gggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagc 725
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 35825680 aggaagtcatgcctgatctctacttcga-agagatcctgaagagattgaaaaggaagagc 35825738
Query: 726 aggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccag 785
|||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35825739 aggcagctgctgagaaggatgtgaccaaggaggaatttcagggtgaatggactgctccag 35825798
Query: 786 ctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtgc 845
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 35825799 ctcctgagttcactgctactcaacctgaggtggcagattggtctgaaggcctgcaggtgc 35825858
Query: 846 cttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaag 905
| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35825859 cctctgtgcccatccagcagttccctactgaagactggagtgctcagcctgccactgaag 35825918
Query: 906 attggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggt 965
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 35825919 attggtctgaagctcccacttctcaggccactgaatgggtaggaatgaccactgagtggt 35825978
Query: 966 cttaa-ttcttccatgaact 984
||||| ||||||||| ||||
Sbjct: 35825979 cttaagttcttccataaact 35825998
Score = 555 bits (280), Expect = e-155
Identities = 730/877 (83%), Gaps = 6/877 (0%)
Strand = Plus / Plus
Query: 51 ttcccgtcgtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaa 110
||||| || |||||| |||||| ||||||||||||| || |||| ||||||||||||
Sbjct: 23694315 ttcccatcataactttaagggaaactttcacaatgttgggggccccaaatgtcctgcaaa 23694374
Query: 111 tgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaacc 170
|| ||| ||||||||||| |||||| |||||||||||||| | |||||||||| |
Sbjct: 23694375 gga----ggaagatgtcctcaaattccttacagcaggaacccacttaggtggcaccagct 23694430
Query: 171 ttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataa 230
|||| |||||||||||||||| |||||| |||||| |||||||||||||| |||| |||
Sbjct: 23694431 ttgatttccaaatggaacagtttatctaccaaaggagaagtgatggcatctgcatcttaa 23694490
Query: 231 atctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaa 290
||||| | ||| |||||| | ||| || |||| ||| ||||| | || ||||||||||
Sbjct: 23694491 atctggcgggaatgtgggaggagcttttgatggcagcttgtgcccttgtggccattgaaa 23694550
Query: 291 acccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagt 350
||| || ||||||||| | |||| || |||||| || || || | ||| |||| | |
Sbjct: 23694551 acctaggtaatgtcagtgacctatcgtctaggaatcgtgacccgctaactgggctgca-t 23694609
Query: 351 ttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttcacta 410
||||||||||| ||||||||||||||| |||||| || ||||||||||| | |||||
Sbjct: 23694610 ttgctgctgcctctggagccactcctactgctgggtgcatcactcctggactatccacta 23694669
Query: 411 accagatccaggcagccttccgggagccaagacttctggtggttactgatcccagggctg 470
|||||||||||||||||| | ||||||| ||||| | ||||||||||||||||||||||
Sbjct: 23694670 accagatccaggcagcctcctgggagcccagactcccagtggttactgatcccagggctg 23694729
Query: 471 accaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaaca 530
|||||| |||||| ||||| |||||||||| ||||| | ||||||||||||||
Sbjct: 23694730 cccaccaacctctctcagagttctcttatgttcacctgaccgatgttgctctgtgtaact 23694789
Query: 531 cagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctcact 590
||||| | |||| | ||||||||| ||| ||||| ||||||||||||| | |||||||
Sbjct: 23694790 cagaccctcctccacattatgtggatgttgtcatcctgtgcaacaacaagagggctcact 23694849
Query: 591 cagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatct 650
||||||||||| | |||||||||||| ||| |||||||||| ||||| ||||||||||||
Sbjct: 23694850 cagtgggtctggtatggtggatgctcacccaggaagttctgagcatgtgtggcaccatct 23694909
Query: 651 cccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaagaga 710
||| |||||| ||||| | ||||||||||| ||||||||||||||||||||| || |||
Sbjct: 23694910 cccatgaacactcatggaaggtcatgcctgatctctacttctacagagatcctaaaaaga 23694969
Query: 711 ttgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtg 770
||| |||||||||||||| || |||||||| | |||| |||||||||||||||||||
Sbjct: 23694970 ttggaaaggaagagcaggaggctgctgagaaagtgatgactaaggaggaatttcagggtg 23695029
Query: 771 aatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccg 830
||||||| | ||| |||||||||||||||| | || |||||||| ||||| ||| | |
Sbjct: 23695030 aatggaccactcca-ctcctgagttcactgctgcccagcctgaggttgcagactggcctg 23695088
Query: 831 aaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctc 890
||||||||||||||| |||||||||||||||| ||||| ||||| ||||||| |||
Sbjct: 23695089 caggtgtgcaggtgccccctgtgcccatccagcatttccccactgacaattggagccctc 23695148
Query: 891 agcctaccactgaagattggtctgcagctcccactgc 927
||||| |||| ||||| |||||||| |||||||||||
Sbjct: 23695149 agcctgccaccgaagactggtctgctgctcccactgc 23695185
Score = 107 bits (54), Expect = 1e-20
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 303 tcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcca 362
||||||||| | || ||||||| ||||||| ||||||| ||| |||||||||| ||
Sbjct: 55065239 tcagtgtcacacccaccaggaagactggccggcgagctatgccgaagtttgctctggctg 55065298
Query: 363 ctggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccagg 422
||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct: 55065299 ctggagccactcctatttctggctgcttcgctcctagaaccttcgctaaccagatccagg 55065358
Query: 423 ca 424
||
Sbjct: 55065359 ca 55065360
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 740 aaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcact 799
||||||||| ||| ||||||||||||||| | |||||| || |||||||||||||| |||
Sbjct: 4629093 aaggctgtgcccagggaggaatttcagggaggatggacggctccagctcctgagtttact 4629034
Query: 800 gc 801
||
Sbjct: 4629033 gc 4629032
Score = 61.9 bits (31), Expect = 7e-07
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 420 aggcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagc 479
||||||||||||| ||| ||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 4629380 aggcagccttccgaaagctgagatgtctgggggttgctgatcccagcactgaccaccagc 4629321
Query: 480 ctctcacagaggcct 494
|||||| ||||||||
Sbjct: 4629320 ctctcatagaggcct 4629306
>Sscrofa_Chr01
|| Length = 315321322
Score = 1172 bits (591), Expect = 0.0
Identities = 877/965 (90%), Gaps = 13/965 (1%)
Strand = Plus / Minus
Query: 26 ggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatg 85
||||||||||| |||||||||||||||||| || | ||||||||||| ||||| ||||||
Sbjct: 263614268 ggggtccatacagcgttgttcttgattcccatcatgacttaaagggaaactttgacaatg 263614209
Query: 86 tccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagca 145
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263614208 tctggagcccttgatgtcctgcaaatgaaagaggaggatgtcctcaaattccttgcagca 263614149
Query: 146 ggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaagg 205
|||||||||| |||| ||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 263614148 agaacccacctaggtgtcaccaaccttgacttccaaatggcacagtctatgtaaagaagg 263614089
Query: 206 aaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcg 265
||||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||||| |
Sbjct: 263614088 aaaagggatagcatctatatcataa-tctgaagagaacctgggagaa-cttctgttggtg 263614031
Query: 266 gctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaat 325
||||||||||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct: 263614030 gctcgtgccattgttgccactgaagatccagctgatgtcagtgtcatatcctccaggaat 263613971
Query: 326 actggccagcgagctgtgctgaagtttgctgctgccactgg-agccactcctattgctgg 384
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263613970 actggccatcgagctgtgctgaagtttgctgctgccactgggagccactcctattgctgg 263613911
Query: 385 ccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagact 444
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 263613910 ccgcttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaaga-t 263613852
Query: 445 tctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaa 504
||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 263613851 tctggtggtgactgatcccagggctgaccaccagcatctcacagaagtctcttatgttaa 263613792
Query: 505 cctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccat 564
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 263613791 cctgcctaccattgctctgtgtaacaaagactctcctctgcattatgcggacatagccat 263613732
Query: 565 cccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccggga 624
||| || |||||| ||| |||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct: 263613731 cccatgaaacaacgaggaagctcactcagtgg-tctgatctggcggatgcttgcccggga 263613673
Query: 625 agttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacct 684
|||||||||||||| |||||||||||| || ||||||| ||||||||||||||| | |
Sbjct: 263613672 agttctgcgcatgcctggcaccatctctcgtgaacaccagtgggaagtcatgcctcattt 263613613
Query: 685 ctacttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggc 744
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 263613612 ttacttctacagagatcctgaagagattgaaaaggaagagcaggcagctgctgagaaggc 263613553
Query: 745 tgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccac 804
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 263613552 tgtgaccaaggaggaatttcagggtgaatggactgctccagctcctgagttcattgctac 263613493
Query: 805 tcaacctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagca 864
|||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 263613492 tcaacctgagatggcagattggtccagaggcgtgcaggtgccttctgtgcccatccatca 263613433
Query: 865 attccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccac 924
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 263613432 gttacctactgaagactggagtgctcagcctaccac-------tggtctgcagctcccac 263613380
Query: 925 tgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaa-ttcttccatgaac 983
||| |||||||||||||| ||||||||| | |||||||| |||||| ||||||||| ||
Sbjct: 263613379 tgctcaggccactgaatgcgtaggaacagctactgagtgatcttaagttcttccatagac 263613320
Query: 984 tctta 988
|||||
Sbjct: 263613319 tctta 263613315
Score = 1126 bits (568), Expect = 0.0
Identities = 845/938 (90%), Gaps = 12/938 (1%)
Strand = Plus / Minus
Query: 29 gtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatgtcc 88
||||||| ||| ||||||||| |||| || || ||||||||||| ||||||||| ||||
Sbjct: 172599884 gtccatatggctttgttcttggttcctgttgtgacttaaagggaaactttcacattgtct 172599825
Query: 89 ggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcagga 148
|||||||| |||||| || |||||||| |||||||||||||| | ||| |||||||||||
Sbjct: 172599824 ggagcccttgatgtcttgtaaatgaaaaaggaggatgtcctctaattctttgcagcagga 172599765
Query: 149 acccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaaa 208
|||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct: 172599764 acccactgaggtggcaccaggcttgacttcccaatggaacattacatctacaaaaggaaa 172599705
Query: 209 agtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggct 268
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct: 172599704 agcgatggcatctacatcataaatctgaagagaacccgggagaaacttctgtggatggct 172599645
Query: 269 cgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatact 328
|||| | | |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 172599644 cgtgacgttgttgccattgaaaacccagctgatgtcagtgtcacatcctccaggaatact 172599585
Query: 329 ggccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccgc 388
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 172599584 ggccagtgagctatactgaagtttgctgctgccactggagccactcctattgctggccac 172599525
Query: 389 ttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctg 448
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 172599524 ttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaagacttctg 172599465
Query: 449 gtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctg 508
||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 172599464 gtggttacttatccaagagctgaccaccaacctctcacagaggcctcttatattaacctg 172599405
Query: 509 cctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatcccg 568
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct: 172599404 cctaccattgctctgtgtaacacagactcgcctctgcgttatgtggacaatgccatcctg 172599345
Query: 569 tgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccgggaagtt 628
|||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 172599344 tgcaacaacaagagagctcactcagtgggtctgatgtggtgaatgcttgcccagg----- 172599290
Query: 629 ctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctctac 688
||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 172599289 ------atgtgtggcaccatctcccgtgaacacccatgggaagtcatgcctgatttctac 172599236
Query: 689 ttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtg 748
|||||||||||||||||||||||||||||||| ||| |||| || ||||||| |||||||
Sbjct: 172599235 ttctacagagatcctgaagagattgaaaaggaggaggaggcagcggctgagatggctgtg 172599176
Query: 749 accaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactcaa 808
|||||||||||| |||||||||||| || ||| |||| ||||||||||||||| ||||||
Sbjct: 172599175 accaaggaggaacttcagggtgaatagaatgctccaggtcctgagttcactgctactcaa 172599116
Query: 809 cctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaattc 868
||||||||||||||||||||| |||| ||||||||||||||| | || ||||||| |||
Sbjct: 172599115 cctgaggtggcagattggtccaaaggcatgcaggtgccttctgggtccttccagcagttc 172599056
Query: 869 cctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgcg 928
||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 172599055 cctactgaagactggagtgctcagcct-gcaccgaagattgctctgcagctcccactttt 172598997
Query: 929 caggccactgaatgggtaggaacaaccactgagtggtc 966
|||||||||||||||||||||| |||||||||||||||
Sbjct: 172598996 caggccactgaatgggtaggaaaaaccactgagtggtc 172598959
Score = 159 bits (80), Expect = 4e-36
Identities = 184/216 (85%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 109 aatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaa 168
|||||| ||||||||||||||||| |||||| || ||||||||||| ||||| |||||
Sbjct: 150365707 aatgaaggaggaggatgtcctcaaattccttacatcaggaacccactcaggtggtaccaa 150365648
Query: 169 ccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcat 228
|||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||| ||||
Sbjct: 150365647 ccttgatttccaaatggaacagt-catctacaaaaggaaaaatgatggcct-tacctcat 150365590
Query: 229 aaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattga 288
| | ||||||||||||||||||| |||||| || |||| |||||| ||||||||| |
Sbjct: 150365589 tactttgaagagaacctgggagaagcttctgccagctgctcctgccattgttgccattta 150365530
Query: 289 aaacccagccgatgtcagtgtcatatcctccaggaa 324
||||| || || ||||| ||| ||||||||||||
Sbjct: 150365529 aaaccttgctgaggtcagggtcccatcctccaggaa 150365494
Score = 143 bits (72), Expect = 2e-31
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 62 acttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggag 121
||||||||||| ||||| ||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 35664465 acttaaagggaaacttttgcaatgtcaggagcccttgatgtcctgcatataaaggaggag 35664524
Query: 122 gatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaa 181
|||| || || |||||||||||||||||| | | ||||||||| |||||||||||||
Sbjct: 35664525 gatgctcttaaactccttgcagcaggaacccccttaagtggcaccagccttgacttccaa 35664584
Query: 182 atggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaa 237
| |||||| |||| | ||||||||||| |||||||||||| || |||||||||||
Sbjct: 35664585 gtagaacagaacatttgcaaaaggaaaaatgatggcatctatattataaatctgaa 35664640
Score = 79.8 bits (40), Expect = 3e-12
Identities = 210/264 (79%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 176 ttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctg 235
|||||||||||||| |||||| | |||||||||||||||||| | | ||| ||| |||
Sbjct: 131820792 ttccaaatggaacactacatcagccaaaggaaaagtgatggcaccgatatcttaagtcta 131820851
Query: 236 aagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaaccca 295
|||||||||| ||||| |||| |||| | || ||| || | | ||||| |||||||
Sbjct: 131820852 aagagaacctcagagaagattctcctggcagttcctgctattgctaccatttaaaacccc 131820911
Query: 296 gccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgct 355
| || ||||| | ||||||||||||| | |||||| | | ||||| | |||||||||
Sbjct: 131820912 actgaggtcagggccatatcctccaggtgcagtggcca-ccatctgtgttaaagtttgct 131820970
Query: 356 gctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccag 415
|||| |||| |||||||| || | || || ||||||| ||| ||||||| |||| |||
Sbjct: 131820971 gctgtcactagagccactactcct-cttgcggcttcacatctgcaaccttccctaagcag 131821029
Query: 416 atccaggcagccttccgggagcca 439
||||| | ||||||||||||||||
Sbjct: 131821030 atccaagtagccttccgggagcca 131821053
Score = 79.8 bits (40), Expect = 3e-12
Identities = 210/264 (79%), Gaps = 2/264 (0%)
Strand = Plus / Minus
Query: 176 ttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctg 235
|||||||||||||| |||||| | |||||||||||||||||| | | ||| ||| |||
Sbjct: 131893995 ttccaaatggaacactacatcagccaaaggaaaagtgatggcaccgatatcttaagtcta 131893936
Query: 236 aagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaaccca 295
|||||||||| ||||| |||| |||| | || ||| || | | ||||| |||||||
Sbjct: 131893935 aagagaacctcagagaagattctcctggcagttcctgctattgctaccatttaaaacccc 131893876
Query: 296 gccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgct 355
| || ||||| | ||||||||||||| | |||||| | | ||||| | |||||||||
Sbjct: 131893875 actgaggtcagggccatatcctccaggtgcagtggcca-ccatctgtgttaaagtttgct 131893817
Query: 356 gctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccag 415
|||| |||| |||||||| || | || || ||||||| ||| ||||||| |||| |||
Sbjct: 131893816 gctgtcactagagccactactcct-cttgcggcttcacatctgcaaccttccctaagcag 131893758
Query: 416 atccaggcagccttccgggagcca 439
||||| | ||||||||||||||||
Sbjct: 131893757 atccaagtagccttccgggagcca 131893734
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 401 accttcactaaccagatccaggcagccttccgggagccaagacttc 446
|||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 150365454 accttccctaaccagatccaggcatccttccgggagtcaagacttc 150365409
>Sscrofa_Chr03
|| Length = 144787322
Score = 940 bits (474), Expect = 0.0
Identities = 735/817 (89%), Gaps = 10/817 (1%)
Strand = Plus / Plus
Query: 18 cccagaccggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactt 77
||||||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||
Sbjct: 38173001 cccagacaggggtccatacagcgttgtccttgattcccactgtaacttaaagggaaactg 38173060
Query: 78 tcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttcc 137
||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct: 38173061 tcacaatgtccagagccctcaaagtcctgcaaatgaaagaggaggaggtcctcaaattct 38173120
Query: 138 ttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatct 197
||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct: 38173121 ttgcagcaggaacccacctaggtgacacc----ttgacttccaaatggaacagtacatct 38173176
Query: 198 acaaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttc 257
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 38173177 acaaaaggaaaagtgatggcatctacagcataaatctgaagagaacctgggagaagcttc 38173236
Query: 258 tgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcct 317
|||||| |||| |||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 38173237 ggttggcagctcctgccattgttgccattgagaacccagctgatgtcagtgtcatatcct 38173296
Query: 318 ccaggaatactggccagcgagctgtgctgaagtttgctgctgccactggagccactccta 377
||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||
Sbjct: 38173297 ccaggaatactggccagcgagctgtgctgaagtttgctgctgccactagcgtcacgccta 38173356
Query: 378 ttgctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagc 437
|||||||| ||||||||||||||||||||||||||||| || ||||||||| | |||||
Sbjct: 38173357 gtgctggcctcttcactcctggaaccttcactaaccaga-cccggcagcctt-ctggagc 38173414
Query: 438 caagacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcctctt 497
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct: 38173415 caagacttctggtggttactgaccccagggctgaccaccagcatctcacaga-gcctctt 38173473
Query: 498 atgttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggaca 557
||||||||||||||||||||||||| ||| ||||||| ||||| | ||| |||||||
Sbjct: 38173474 tcattaacctgcctaccattgctctgtgcaacgcagactctcctctacattacgtggaca 38173533
Query: 558 ttgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcg 617
|||||| || || || ||||||||||||||||||||||||||| |||||||||||
Sbjct: 38173534 ttgccagtccatg---cagtaagggagctcactcagtgggtctgatggggtggatgctca 38173590
Query: 618 cccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgc 677
|| ||||| ||||| ||| |||||||||||| | |||||||||||||| |||||||
Sbjct: 38173591 cctaggaagatctgcatgtgcctggcaccatctctcatgaacacccatgggaggtcatgc 38173650
Query: 678 ctgacctctacttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctg 737
|||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct: 38173651 ctgatctctgcttctacagagatcctgaagagactgaaaaggaagagcaggcagcagccg 38173710
Query: 738 agaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttca 797
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 38173711 agaaggctgtgaccaaggaggaatttcagggtgaatggtctgctccacctcctgagttca 38173770
Query: 798 ctgccactcaacctgaggtggcagattggtccgaagg 834
|||| |||||||||||||||||||| |||||| ||||
Sbjct: 38173771 ctgctactcaacctgaggtggcagactggtccaaagg 38173807
Score = 932 bits (470), Expect = 0.0
Identities = 767/864 (88%), Gaps = 19/864 (2%)
Strand = Plus / Minus
Query: 6 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 65
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 139808191 ctttccgcgctgcccagactggggtccacacggcgttgttcttgattcccgtggtaactt 139808132
Query: 66 aaa-gggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 124
||| |||| |||||| ||||||| | |||||||||||||| ||||| | |||||||
Sbjct: 139808131 aaaagggaaactttcgcaatgtctgcagccctcgatgtccagcaaa-----gcggaggat 139808077
Query: 125 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 184
||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 139808076 gtctgcaggttccttgcagcaggaacccaccttgctggcaccaaccttgacttccacatg 139808017
Query: 185 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 244
||||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 139808016 gaacagtacctccacaaaaggaaaagtgatggcatttacatcagaaatcggaagagaacc 139807957
Query: 245 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 304
|||||||| ||||||||||| |||| |||||| |||||||| | | ||||||| || |||
Sbjct: 139807956 tgggagaagcttctgttggcagctcttgccattgttgccatggcagacccagctgaggtc 139807897
Query: 305 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 364
||||||| ||||| ||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 139807896 agtgtcacctcctctaggaatatcggccagtgggctgtgctgaagtttgctgctgccact 139807837
Query: 365 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 424
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 139807836 ggagcccctcctattgctggctgcttcactcctggaaccttccctaaccagatccaggca 139807777
Query: 425 gccttccgggagccaagacttctggtggttactgatcccagggctga-ccaccagcctct 483
|||||| |||||||||||||||||||||| || |||||||||||||| || || ||||||
Sbjct: 139807776 gccttctgggagccaagacttctggtggtgaccgatcccagggctgacccccccgcctct 139807717
Query: 484 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 543
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 139807716 cacagaggcctcctgtgttaacctgcgtaccattgctctgtgtaacacagactcgcctct 139807657
Query: 544 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 603
||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 139807656 gcgttatgtggacatcgccatcccgagcaaccacaagggagctcactcagtgggtccgat 139807597
Query: 604 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 663
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct: 139807596 gtggtagatgctcgcctgggaagttctgcgcatgcgtggcgccatcacccgtgaaccccc 139807537
Query: 664 atgggaagtca---tgcctgacctctacttctacagagatcctgaagagattgaaaagga 720
||||||| || ||||||||||| || ||||||||| ||||||||||||||| ||||
Sbjct: 139807536 gtgggaagccaggtggcctgacctctcctgctacagagaccctgaagagattgaagagga 139807477
Query: 721 agagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgc 780
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139807476 agagcaggcagtggcggagaaggctgtgaccaaggaggaatttcagggtgaatggactgt 139807417
Query: 781 gccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgca 840
|||||||| | |||| |||| ||||||||| ||| |||| ||||| |||||
Sbjct: 139807416 gccagctcttcggttccctgctactcaacct---------gatgggtctgaaggcgtgca 139807366
Query: 841 ggtgccttctgtgcccatccagca 864
|||||| |||||||||||||||||
Sbjct: 139807365 ggtgccctctgtgcccatccagca 139807342
Score = 113 bits (57), Expect = 2e-22
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 909 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtctt 968
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 139807324 ggtctgcagctcccactgctcaggccactgaatgggtaggaacaaccactgagtggtctg 139807265
Query: 969 aa-ttcttccatgaactctta 988
|| |||||||| ||||||||
Sbjct: 139807264 aagttcttccacaaactctta 139807244
Score = 87.7 bits (44), Expect = 1e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 899 actgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccact 958
|||||||| |||||||||||| ||||||| ||||| |||||||||||||||| || ||||
Sbjct: 38173850 actgaagactggtctgcagctgccactgctcaggctactgaatgggtaggaataatcact 38173909
Query: 959 gagtggtcttaa 970
||| ||||||||
Sbjct: 38173910 gaggggtcttaa 38173921
>Sscrofa_Chr12
|| Length = 63588571
Score = 932 bits (470), Expect = 0.0
Identities = 767/864 (88%), Gaps = 19/864 (2%)
Strand = Plus / Minus
Query: 6 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 65
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 54882901 ctttccgcgctgcccagactggggtccacacggcgttgttcttgattcccgtggtaactt 54882842
Query: 66 aaa-gggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 124
||| |||| |||||| ||||||| | |||||||||||||| ||||| | |||||||
Sbjct: 54882841 aaaagggaaactttcgcaatgtctgcagccctcgatgtccagcaaa-----gcggaggat 54882787
Query: 125 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 184
||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 54882786 gtctgcaggttccttgcagcaggaacccaccttgctggcaccaaccttgacttccacatg 54882727
Query: 185 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 244
||||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 54882726 gaacagtacctccacaaaaggaaaagtgatggcatttacatcagaaatcggaagagaacc 54882667
Query: 245 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 304
|||||||| ||||||||||| |||| |||||| |||||||| | | ||||||| || |||
Sbjct: 54882666 tgggagaagcttctgttggcagctcttgccattgttgccatggcagacccagctgaggtc 54882607
Query: 305 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 364
||||||| ||||| ||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 54882606 agtgtcacctcctctaggaatatcggccagtgggctgtgctgaagtttgctgctgccact 54882547
Query: 365 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 424
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 54882546 ggagcccctcctattgctggctgcttcactcctggaaccttccctaaccagatccaggca 54882487
Query: 425 gccttccgggagccaagacttctggtggttactgatcccagggctga-ccaccagcctct 483
|||||| |||||||||||||||||||||| || |||||||||||||| || || ||||||
Sbjct: 54882486 gccttctgggagccaagacttctggtggtgaccgatcccagggctgacccccccgcctct 54882427
Query: 484 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 543
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 54882426 cacagaggcctcctgtgttaacctgcgtaccattgctctgtgtaacacagactcgcctct 54882367
Query: 544 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 603
||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 54882366 gcgttatgtggacatcgccatcccgagcaaccacaagggagctcactcagtgggtccgat 54882307
Query: 604 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 663
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct: 54882306 gtggtagatgctcgcctgggaagttctgcgcatgcgtggcgccatcacccgtgaaccccc 54882247
Query: 664 atgggaagtca---tgcctgacctctacttctacagagatcctgaagagattgaaaagga 720
||||||| || ||||||||||| || ||||||||| ||||||||||||||| ||||
Sbjct: 54882246 gtgggaagccaggtggcctgacctctcctgctacagagaccctgaagagattgaagagga 54882187
Query: 721 agagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgc 780
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54882186 agagcaggcagtggcggagaaggctgtgaccaaggaggaatttcagggtgaatggactgt 54882127
Query: 781 gccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgca 840
|||||||| | |||| |||| ||||||||| ||| |||| ||||| |||||
Sbjct: 54882126 gccagctcttcggttccctgctactcaacct---------gatgggtctgaaggcgtgca 54882076
Query: 841 ggtgccttctgtgcccatccagca 864
|||||| |||||||||||||||||
Sbjct: 54882075 ggtgccctctgtgcccatccagca 54882052
Score = 113 bits (57), Expect = 2e-22
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 909 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtctt 968
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 54882034 ggtctgcagctcccactgctcaggccactgaatgggtaggaacaaccactgagtggtctg 54881975
Query: 969 aa-ttcttccatgaactctta 988
|| |||||||| ||||||||
Sbjct: 54881974 aagttcttccacaaactctta 54881954
>gb|GL894387.2| Sus scrofa unplaced genomic scaffold ChrUScaf2271
Length = 78668
Score = 844 bits (426), Expect = 0.0
Identities = 626/686 (91%), Gaps = 5/686 (0%)
Strand = Plus / Plus
Query: 26 ggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatg 85
||||||||||| |||||||||||||||||| || | ||||||||||| ||||| ||||||
Sbjct: 7529 ggggtccatacagcgttgttcttgattcccatcatgacttaaagggaaactttgacaatg 7588
Query: 86 tccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagca 145
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7589 tctggagcccttgatgtcctgcaaatgaaagaggaggatgtcctcaaattccttgcagca 7648
Query: 146 ggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaagg 205
|||||||||| |||| ||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 7649 agaacccacctaggtgtcaccaaccttgacttccaaatggcacagtctatgtaaagaagg 7708
Query: 206 aaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcg 265
||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||||||||| |
Sbjct: 7709 aaaagggatagcatctatatcat-aatctgaagagaacctgggag-aacttctgttggtg 7766
Query: 266 gctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaat 325
||||||||||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct: 7767 gctcgtgccattgttgccactgaagatccagctgatgtcagtgtcatatcctccaggaat 7826
Query: 326 actggccagcgagctgtgctgaagtttgctgctgccact-ggagccactcctattgctgg 384
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7827 actggccatcgagctgtgctgaagtttgctgctgccactgggagccactcctattgctgg 7886
Query: 385 ccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagact 444
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 7887 ccgcttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaaga-t 7945
Query: 445 tctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaa 504
||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 7946 tctggtggtgactgatcccagggctgaccaccagcatctcacagaagtctcttatgttaa 8005
Query: 505 cctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccat 564
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 8006 cctgcctaccattgctctgtgtaacaaagactctcctctgcattatgcggacatagccat 8065
Query: 565 cccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccggga 624
||| || |||||| ||| |||||||||||| |||||||| ||| ||||||| ||||||||
Sbjct: 8066 cccatgaaacaacgaggaagctcactcagt-ggtctgatctggcggatgcttgcccggga 8124
Query: 625 agttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacct 684
|||||||||||||| |||||||||||| || ||||||| ||||||||||||||| | |
Sbjct: 8125 agttctgcgcatgcctggcaccatctctcgtgaacaccagtgggaagtcatgcctcattt 8184
Query: 685 ctacttctacagagatcctgaagaga 710
|||||||||||||||||||||||||
Sbjct: 8185 ttacttctacagagatcctgaagaga 8210
Score = 184 bits (93), Expect = 7e-44
Identities = 164/187 (87%), Gaps = 8/187 (4%)
Strand = Plus / Plus
Query: 803 actcaacctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccag 862
|||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 8316 actcaacctgagatggcagattggtccagaggcgtgcaggtgccttctgtgcccatccat 8375
Query: 863 caattccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctccc 922
|| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 8376 cagttacctactgaagactggagtgctcagcctaccac-------tggtctgcagctccc 8428
Query: 923 actgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaa-ttcttccatga 981
||||| |||||||||||||| ||||||||| | |||||||| |||||| |||||||||
Sbjct: 8429 actgctcaggccactgaatgcgtaggaacagctactgagtgatcttaagttcttccatag 8488
Query: 982 actctta 988
|||||||
Sbjct: 8489 actctta 8495
>Sscrofa_Chr14
|| Length = 153851969
Score = 829 bits (418), Expect = 0.0
Identities = 797/924 (86%), Gaps = 17/924 (1%)
Strand = Plus / Minus
Query: 28 ggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatgtc 87
||||||||| | |||||||| ||||||| ||||||||||| || ||||||||||||||
Sbjct: 101040270 ggtccatacagtgttgttctggattcccactgtaacttaaagagaaactttcacaatgtc 101040211
Query: 88 cggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcagg 147
|||| | || |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 101040210 cggatgttt-gaggtcctgcaaatgaagtaggaggatgtcctcaaattccttgcagcagg 101040152
Query: 148 aacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaa 207
||||||| | |||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 101040151 aacccacttaggtggcaccaacctagacttccaaatggaacaatacagctacaaaaggaa 101040092
Query: 208 aagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggc 267
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 101040091 aagtgatggcatctacatcataaatctgaagagaacctgggagaaccttctgttggcagt 101040032
Query: 268 tcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatac 327
||||||||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 101040031 tcgtgccattgttgtcattgaaaacccagctgatgtcagtgtcatatcttcaaggaatac 101039972
Query: 328 tggccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccg 387
| |||| | ||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 101039971 tagccaccaagctgtgctgaagtttgctactgccactagagccacttctattgctggcca 101039912
Query: 388 cttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttct 447
|||||||| |||| ||||||||||||||||| || ||| ||| ||||||||||||||||
Sbjct: 101039911 tttcactcccggaaacttcactaaccagatccgggtagcattctgggagccaagacttct 101039852
Query: 448 ggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacct 507
|||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 101039851 ggtgtttactgatctcagggctgattaccagcctctcacagaggcctcttatattaacct 101039792
Query: 508 gcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatccc 567
|| | | |||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct: 101039791 acccccaactgctctgtgtaatacagactctcctctgtattatgtggacattgccatcta 101039732
Query: 568 gtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccgggaagt 627
||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 101039731 atgcaacaacaagggaactcactcagtgggtctgatgtggtgggtgctggcccaggaaga 101039672
Query: 628 tctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctcta 687
||||| | ||| ||||||||||||| ||||| ||| ||| ||||||||||| |||||
Sbjct: 101039671 tctgcacttgcatggcaccatctcctatgaaca-ccacaggaggtcatgcctgatctcta 101039613
Query: 688 cttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgt 747
|| || |||| ||||| |||||| ||||||||||||||| || |||||||
Sbjct: 101039612 ctgctgcagatatcctaaagagactgaaaaggaagagcatgcagcagctg---------- 101039563
Query: 748 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactca 807
|||||||| |||||||| || ||||| | ||| ||| ||||||||| | |||||
Sbjct: 101039562 -----aggaggaacttcagggtaaacggactactccatctcatgagttcaccactactca 101039508
Query: 808 acctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaatt 867
|||| | | ||||| |||||| |||| |||| ||||| ||||||||||||||||| ||
Sbjct: 101039507 acctaaagcagcagactggtccaaaggcatgcaagtgccctctgtgcccatccagcagtt 101039448
Query: 868 ccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgc 927
|||||||||||| ||||||||||||||| |||||||| | | ||||| ||||||||||||
Sbjct: 101039447 ccctactgaagactggagtgctcagcctgccactgaaaactagtctgtagctcccactgc 101039388
Query: 928 gcaggccactgaatgggtaggaac 951
|||||||||||||||||||||||
Sbjct: 101039387 tcaggccactgaatgggtaggaac 101039364
Score = 733 bits (370), Expect = 0.0
Identities = 651/743 (87%), Gaps = 15/743 (2%)
Strand = Plus / Plus
Query: 228 taaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattg 287
||||||| | |||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct: 77017853 taaatctaaggagaacctgggagaaacttcggt----ggctcgtgccattgttgccattg 77017908
Query: 288 aaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctga 347
||||||||| | ||||| ||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 77017909 aaaacccagttgttgtcaatgtcatatcctccaggaatactgactagcaagctgtgctga 77017968
Query: 348 agtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttca 407
|||||||||||||||||||||| |||| | ||||||| |||||||||||||||| |||
Sbjct: 77017969 agtttgctgctgccactggagctgttcctgtcgctggccacttcactcctggaaccatca 77018028
Query: 408 ctaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccaggg 467
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 77018029 ctaaccagatccaggcagccttctgggatccaagacttctggtggttactgatcccaggg 77018088
Query: 468 ctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgta 527
||||| || ||||||||||||| |||| |||||||||||| ||||| |||||||||
Sbjct: 77018089 gtgaccgccggcctctcacagagaga-cttacgttaacctgccttccattcctctgtgta 77018147
Query: 528 acacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctc 587
||||||||| || ||||||| ||| | |||||| ||||||||||| |||||||
Sbjct: 77018148 acacagact-------gcattatgtgaacactttcatcccctgcaacaacaaaggagctc 77018200
Query: 588 actcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcacca 647
|||||||||||||||||||||||||||| |||| ||||||| ||| ||| | ||||||||
Sbjct: 77018201 actcagtgggtctgatgtggtggatgctagcccaggaagttgtgcacattcatggcacca 77018260
Query: 648 tctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaag 707
||||| ||||| || ||| || |||||| | |||| ||| ||||||||| ||||
Sbjct: 77018261 cctcccataaacactcacaggaggttatgcctcatctct---tctccagagatccagaag 77018317
Query: 708 agattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagg 767
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 77018318 agattgaaaagggagagcaggcagcagctgagaagactgtgaccaaggaggaatttcagg 77018377
Query: 768 gtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggt 827
||||| |||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 77018378 gtgaactgactgctccagctcctgtgttcactggtactcaacctgaggtggcagactggt 77018437
Query: 828 ccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtg 887
| ||||| ||||| |||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 77018438 ctgaaggcatgcagttgccctctgtgcccatccagcagttccctactgaagactggagtg 77018497
Query: 888 ctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggtag 947
||||||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct: 77018498 ctcagcccgccactgaagactggtctgcagctcccattgctcaggccactgaatgggtag 77018557
Query: 948 gaacaaccactgagtggtcttaa 970
|||||||||||||||||||||||
Sbjct: 77018558 gaacaaccactgagtggtcttaa 77018580
Score = 335 bits (169), Expect = 3e-89
Identities = 220/237 (92%)
Strand = Plus / Plus
Query: 5 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 64
||||||| ||||||||||| |||||||||| ||| ||||| ||||||||| | ||||||
Sbjct: 77017365 cctttccacgctgcccagaaaggggtccatatggcattgtttttgattcccattgtaact 77017424
Query: 65 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 124
|||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||
Sbjct: 77017425 taaagggaaactttcacaatgtctggagcccttgatgtcctgcaaaggaaagaggagaat 77017484
Query: 125 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 184
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 77017485 gtcctcaaattccttgcagcaggaacccacctaggtggtaccaaccttgacttccaaatg 77017544
Query: 185 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 241
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77017545 gaatagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 77017601
>Sscrofa_Chr09
|| Length = 153670197
Score = 823 bits (415), Expect = 0.0
Identities = 799/927 (86%)
Strand = Plus / Minus
Query: 44 ttcttgattcccgtcgtaacttaaagggagactttcacaatgtccggagccctcgatgtc 103
|||| ||||||| || | ||||||||||| | ||||||||| || |||| | | ||||||
Sbjct: 39274007 ttctggattcccatctttacttaaagggaaattttcacaatctctggaggcattgatgtc 39273948
Query: 104 ctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggc 163
|| |||||||| |||||||||||||||||| | ||||||||||||||||| | |||| |
Sbjct: 39273947 ctacaaatgaaggaggaggatgtcctcaagaactttgcagcaggaacccacttaggtgac 39273888
Query: 164 accaaccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctac 223
|||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 39273887 accaacctggatttccaaatggaacagtacatctacagaaggaaaagtggtggcatctgc 39273828
Query: 224 atcataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgcc 283
||||||||||||||||||| |||||||| ||||| ||||| ||| ||||||| | |||
Sbjct: 39273827 atcataaatctgaagagaatctgggagaggcttcttttggcagcttgtgccattgctgct 39273768
Query: 284 attgaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtg 343
|||||||||||||| ||||||| ||||| ||||| |||||||| ||| ||||||||
Sbjct: 39273767 attgaaaacccagctgatgtcattgtcacatcctttgggaatacttgcccatgagctgtg 39273708
Query: 344 ctgaagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaacc 403
||| || || |||||||||| |||||||||||||||| | | ||||||||| ||||| |
Sbjct: 39273707 ctggagctttctgctgccacaggagccactcctattgattgttgcttcactcttggaaac 39273648
Query: 404 ttcactaaccagatccaggcagccttccgggagccaagacttctggtggttactgatccc 463
|||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 39273647 ttcactaaccagatccaggcagttttctgggagccaagacttctggtggttattgatccc 39273588
Query: 464 agggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctg 523
||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||
Sbjct: 39273587 agggctgactaccagcctctcccagaggcctcttatgttcacctacctaacattgctcta 39273528
Query: 524 tgtaacacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaaggga 583
|||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 39273527 cgtaacacagactgttctctgcattatgtggacatcaccatcctgtgcaacaacaaggga 39273468
Query: 584 gctcactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggc 643
||||||| |||||||||||||||| | ||||| || ||||||||||| ||||| |||||
Sbjct: 39273467 gctcacttagtgggtctgatgtggcagctgctcacctgggaagttctgtgcatgtgtggc 39273408
Query: 644 accatctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcct 703
||||||||| | |||||| ||||||| |||||||||||||| ||||||| |||| |||||
Sbjct: 39273407 accatctccagtgaacactcatgggaggtcatgcctgacctttacttctgcagaaatcct 39273348
Query: 704 gaagagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaattt 763
|| ||||||||||| |||||||| || ||||||| |||||||| |||||||||||||||
Sbjct: 39273347 gaggagattgaaaaagaagagcaagcagcagctgggaaggctgcaaccaaggaggaattt 39273288
Query: 764 cagggtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagat 823
|||||||||||||||| |||||||||||||||||||| || |||| ||| || |||||
Sbjct: 39273287 cagggtgaatggactggtccagctcctgagttcactgctacgcaacatgatgttgcagac 39273228
Query: 824 tggtccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattgg 883
|| ||| |||| ||||||||| ||| ||||||||||||| |||| ||| |||| | |
Sbjct: 39273227 tgttccaaaggcacgcaggtgccctctttgcccatccagcagttccttaccgaagcctag 39273168
Query: 884 agtgctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgg 943
|||||||||||| |||||||| ||||| ||| | |||| |||||||| ||||||
Sbjct: 39273167 agtgctcagcctgccactgaaatctggtccatagcggtccctgctcaggccaccgaatgg 39273108
Query: 944 gtaggaacaaccactgagtggtcttaa 970
|||||||||||||||||||| ||||||
Sbjct: 39273107 gtaggaacaaccactgagtgctcttaa 39273081
Score = 579 bits (292), Expect = e-162
Identities = 542/624 (86%), Gaps = 1/624 (0%)
Strand = Plus / Plus
Query: 347 aagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttc 406
|||||| ||||| |||| |||||||| ||| |||||||| ||||||||||||||||||||
Sbjct: 32883095 aagttttctgctaccaccggagccacccctgttgctggctgcttcactcctggaaccttc 32883154
Query: 407 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccagg 466
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32883155 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgttcccagg 32883214
Query: 467 gctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgt 526
| |||||||||||||||| |||| ||||||||||| |||||||| ||| || |||||
Sbjct: 32883215 gatgaccaccagcctctcctagagacctcttatgttcacctgcctcccacggccatgtgt 32883274
Query: 527 aacacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagct 586
||||||||||| |||||| || |||||||||| |||||| |||||||| ||||||||||
Sbjct: 32883275 aacacagactctcctctgtgtcatgtggacatcaccatcctgtgcaacagcaagggagct 32883334
Query: 587 cactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcacc 646
|||| | ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||
Sbjct: 32883335 cactttgagggtctgatgtggcagatgctcgcctgggaagttctgtgcatgtgtggcacc 32883394
Query: 647 atctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaa 706
| |||| | |||||| ||||||| |||||||||||| ||| ||||| |||||||||||||
Sbjct: 32883395 acctccagtgaacactcatgggaggtcatgcctgacttctccttctgcagagatcctgaa 32883454
Query: 707 gagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcag 766
||||||| ||| |||||| |||| ||||||| ||| ||||||||||||||| ||||||||
Sbjct: 32883455 gagattgcaaacgaagagaaggcagcagctgggaaagctgtgaccaaggagtaatttcag 32883514
Query: 767 ggtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattgg 826
||| ||||||| || || |||||||| |||||||| | ||||||| |||| ||| ||
Sbjct: 32883515 ggtaaatggacggctcccgctcctgaattcactgctctttaacctgaagtgggagactga 32883574
Query: 827 tccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagt 886
|| ||||| |||||||||| ||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 32883575 tctgaaggcatgcaggtgccctctgtgcccatccagcaggtccct-ctgaagactggagt 32883633
Query: 887 gctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggta 946
||||||||| |||||||||| | | ||| ||||||| |||| || ||||||| |||| |
Sbjct: 32883634 gctcagcctgccactgaagacttgcctgaagctccccctgcccaaaccactgactgggga 32883693
Query: 947 ggaacaaccactgagtggtcttaa 970
| ||||||||||||| |||||||
Sbjct: 32883694 gaaacaaccactgagcagtcttaa 32883717
Score = 133 bits (67), Expect = 2e-28
Identities = 137/160 (85%), Gaps = 4/160 (2%)
Strand = Plus / Plus
Query: 109 aatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaa 168
|||||| ||||||||||||||||| | |||| ||||||||||| || | |||||| |||
Sbjct: 32882874 aatgaaggaggaggatgtcctcaaatcccttccagcaggaacctacttaagtggcagcaa 32882933
Query: 169 ccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatg----gcatctaca 224
| ||| ||||||| |||||||||| |||||||||||||||||||||| | |||||||
Sbjct: 32882934 ctttggcttccaagtggaacagtatatctacaaaaggaaaagtgatggtatgtatctaca 32882993
Query: 225 tcataaatctgaagagaacctgggagaaacttctgttggc 264
||| ||||||| || |||||||| |||| |||||||||||
Sbjct: 32882994 tcaaaaatctggagtgaacctggcagaagcttctgttggc 32883033
Score = 109 bits (55), Expect = 3e-21
Identities = 319/402 (79%), Gaps = 15/402 (3%)
Strand = Plus / Plus
Query: 168 accttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatct-acatc 226
||||||||||||||||| || ||| ||||||||||||||| || |||||||||| |||||
Sbjct: 75449755 accttgacttccaaatgaaagagtccatctacaaaaggaacagagatggcatctcacatc 75449814
Query: 227 ataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccatt 286
|| ||||||||| |||||||||||||||| | |||| | ||| ||||||||
Sbjct: 75449815 atcaatctgaaggaaacctgggagaaactttt-------gctcataccactgttgccatg 75449867
Query: 287 gaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctg 346
|| |||| | ||||||| |||||| ||||||||||||| ||| |||||| ||||
Sbjct: 75449868 gacaacctggatgatgtca-caccatatcttccaggaatactgaccaaagagctgggctg 75449926
Query: 347 aagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttc 406
| |||||||||||| || ||| |||| ||||| || | |||| |||||||| ||||
Sbjct: 75449927 atgtttgctgctgc--ctcaagctactcggcttgcttgctgtttcattcctggaaacttc 75449984
Query: 407 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccagg 466
| | |||||||||||||||| |||||| ||||| ||||||| |||| ||||||
Sbjct: 75449985 aatcgttagatccaggcagccttttgggagctgctacttcaggtggttgctgaccccagg 75450044
Query: 467 gctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgc-tctgtg 525
|||||||||||||| | ||| ||| ||||| |||||||||||||| ||| ||| ||
Sbjct: 75450045 actgaccaccagcctgtaacattggcatcttaggttaacctgcctac---tgcttctctg 75450101
Query: 526 taacacagactcacctctgcgttatgtggacattgccatccc 567
|||||||| || ||||| | | ||||||||||||||||||
Sbjct: 75450102 aaacacagattcttctctgtgctgtgtggacattgccatccc 75450143
>Sscrofa_Chr02
|| Length = 162569375
Score = 613 bits (309), Expect = e-173
Identities = 767/913 (84%), Gaps = 5/913 (0%)
Strand = Plus / Plus
Query: 60 taacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagagg 119
|||||| |||||| ||||||||| | | | ||| || |||||||| |||||||| ||||
Sbjct: 88651635 taactttaagggaaactttcacagtattcagagtccctgatgtcctacaaatgaaggagg 88651694
Query: 120 aggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttcc 179
||||||| || || ||||||||||||||||||||| | | ||| |||| |||||||||
Sbjct: 88651695 aggatgttcttaaattccttgcagcaggaacccacttagacagcatcaacgttgacttcc 88651754
Query: 180 aaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaaga 239
|||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct: 88651755 aaatggaatagtacatctacaaaaggaaacgtggcggcatctacctcataaatctgaaga 88651814
Query: 240 gaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccg 299
||||||||||||| |||| ||| |||| |||||| | ||| | ||||||| ||||
Sbjct: 88651815 gaacctgggagaagcttccca-ggcagctcatgccattggtgctactgaaaacacagctc 88651873
Query: 300 atgtcagtgtcatatcctccaggaatactggccagcgagctgtgctga-agtttgctgct 358
||| |||| | | ||||||||| |||||||||| || | |||||| |||||||||||
Sbjct: 88651874 atgccagttttacatcctccagaaatactggcctatgaaccgtgctgccagtttgctgct 88651933
Query: 359 gccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatc 418
||| | |||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 88651934 cccaataaagccactcctatcactggctgtttcactcctggaaccttcactaaccagatc 88651993
Query: 419 caggcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccag 478
||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||
Sbjct: 88651994 caggcagccttccgggagccaagacttgtggtggtcactgatctcagggctgcccaccaa 88652053
Query: 479 cctctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactca 538
|||||||||||| ||||||| ||| |||||||| ||| ||||| ||||||||||| |
Sbjct: 88652054 cctctcacagagacctcttaagttgacctgcctgccactgctccacgtaacacagaccct 88652113
Query: 539 cctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggt 598
|| |||||| |||| ||| ||||||||| | |||| ||||||||||||||||| |||
Sbjct: 88652114 tctgtgcgttgtgtgaacactgccatcccaggtaacagtaagggagctcactcagtaggt 88652173
Query: 599 ctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccg-gga 657
||| ||||||||| |||| ||| | |||||| |||||||| ||||| ||| | | | | |
Sbjct: 88652174 ctggtgtggtggaggctcacccagaaagttcagcgcatgcatggcatcattttctgtgaa 88652233
Query: 658 acacccatgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaa 717
||||||| |||| ||||||||||| ||| |||| |||||||||||||||||| ||||||
Sbjct: 88652234 acacccaagggaggtcatgcctgatctccacttagacagagatcctgaagagactgaaaa 88652293
Query: 718 ggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggac 777
|||||||||||| | |||||||||||||||||||||||||| |||| |||||||| |||
Sbjct: 88652294 ggaagagcaggcagaagctgagaaggctgtgaccaaggaggtattttagggtgaacagac 88652353
Query: 778 tgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgt 837
| |||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||
Sbjct: 88652354 -actccagctcctgagttgactgctcctcaacctgaggtggcagactggtctgaaggtgt 88652412
Query: 838 gcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctac 897
||||| || | ||||||||| | ||| |||||||| |||| | || |||||||||| |
Sbjct: 88652413 tcaggtaccctatgtgcccattcggcagttccctaccgaaggtgtgattgctcagcctgc 88652472
Query: 898 cactgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccac 957
||||||||| | ||||||| ||| |||| |||||| ||||| | | |||||||||||
Sbjct: 88652473 cactgaagaaaagcctgcagcaccccctgctcaggccgctgaaagag-aggaacaaccaa 88652531
Query: 958 tgagtggtcttaa 970
||| |||||||||
Sbjct: 88652532 tgaatggtcttaa 88652544
Score = 607 bits (306), Expect = e-171
Identities = 519/587 (88%), Gaps = 6/587 (1%)
Strand = Plus / Plus
Query: 142 agcaggaacccaccttggtggcaccaaccttgacttccaaatgga--acagtacatctac 199
||||||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 47865884 agcaggaacccacttaggtggaaccaacctggacttccaaatggagaacagtacatctac 47865943
Query: 200 aaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctg 259
|||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 47865944 aaaaggaaaagtgagggcatctacatcataaatctgaagagaacccggaagaagcttctg 47866003
Query: 260 ttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctcc 319
||||| |||| |||||| | ||||||| ||||| |||| ||||||| || ||||||||||
Sbjct: 47866004 ttggcagctcctgccattgctgccattaaaaactcagctgatgtcaatgacatatcctcc 47866063
Query: 320 aggaatactggccagcgagctgtgctgaagtttgctgctgccactggagccactcctatt 379
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 47866064 tggaatgctggccagtgagctgtgctaaagtttgctcctgccactggagccacttctatt 47866123
Query: 380 gctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagcca 439
|||||| | |||||||||| || ||| ||||||||||||| |||| |||| |||||||
Sbjct: 47866124 gctggctgtttcactcctgcaaggttccctaaccagatccaagcaggcttctaggagcca 47866183
Query: 440 agacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttat 499
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47866184 agacttctggtggttaatgatcccagggctgaccaccagcctctcacagaggcctcttag 47866243
Query: 500 gttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacatt 559
||| || ||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct: 47866244 gttcactcacctaccactgctctgtgtaacacagagtttcctctgcgttatgtggacatc 47866303
Query: 560 gccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcc 619
||||||| ||| ||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 47866304 gccatcctgtg---caacaagggagctcactcagtgggtctgatgctgt-gatgcttgcc 47866359
Query: 620 cgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcct 679
||||| ||||||| ||||| || |||||||||| |||||||||||||| ||||| ||
Sbjct: 47866360 cgggaggttctgcccatgcatgacaccatctcctatgaacacccatgggaggtcatttct 47866419
Query: 680 gacctctacttctacagagatcctgaagagattgaaaaggaagagca 726
||||||||||||||||||| || ||||| |||| |||||||||||||
Sbjct: 47866420 gacctctacttctacagagttcgtgaagtgattaaaaaggaagagca 47866466
Score = 176 bits (89), Expect = 2e-41
Identities = 215/256 (83%), Gaps = 7/256 (2%)
Strand = Plus / Plus
Query: 714 aaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaat 773
||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 47866649 aaaaggaagagcaggtggcagccaggaaggctgtgaccaaggaggaatttcaggatgaat 47866708
Query: 774 ggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaag 833
||| ||| ||||||||||||||| |||||||||||||| |||| |||||| |||
Sbjct: 47866709 ggattgc------tcctgagttcactgctactcaacctgaggtcgcaggctggtccaaag 47866762
Query: 834 gtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctcagc 893
| |||||| ||| || ||| ||| ||||| |||| |||||| | || |||||||||
Sbjct: 47866763 gcatgcaggcgccctccgtgtccactcagcagttcctcactgaaaactg-agtgctcagt 47866821
Query: 894 ctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaa 953
| || ||||| | |||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 47866822 ccactgctgaaaactggtctgcagctcccactgctcaggccacagaatgggcaggaacaa 47866881
Query: 954 ccactgagtggtctta 969
||||||||||||||||
Sbjct: 47866882 ccactgagtggtctta 47866897
Score = 161 bits (81), Expect = 1e-36
Identities = 147/169 (86%)
Strand = Plus / Plus
Query: 84 tgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcag 143
||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| |
Sbjct: 143664528 tgtccagagcccttgatgtcctgcaaaggaaaggggaggatgtcctcaaattccttgtgg 143664587
Query: 144 caggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaa 203
|||||| ||| | || |||||| |||||||||||||||||||||||| || ||| ||
Sbjct: 143664588 aaggaactcacttcagtagcaccagccttgacttccaaatggaacagtatattcacacaa 143664647
Query: 204 ggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaa 252
||| || |||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 143664648 ggagaaatgatggtatctgcatcataaatctgaagagaacctgggagaa 143664696
Score = 137 bits (69), Expect = 1e-29
Identities = 313/391 (80%), Gaps = 10/391 (2%)
Strand = Plus / Plus
Query: 57 tcgtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaag 116
|||||| ||||||| | | ||||||||||||| | |||| |||||||||||||||||||
Sbjct: 37349735 tcgtaagttaaaggaaaattttcacaatgtccaaatcccttgatgtcctgcaaatgaaag 37349794
Query: 117 aggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgact 176
|| |||||||| |||| || ||||||||| |||||| | | | ||| || |||||||
Sbjct: 37349795 agaaggatgtcttcaactttcttgcagcaagaaccc---tagatagcatcagtcttgact 37349851
Query: 177 tccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctga 236
||||| ||||||||||||||||| |||||||||||||| | | | | | | |
Sbjct: 37349852 accaaa-----cagtacatctacaaaagaaaaagtgatggcattaaacttacacacccaa 37349906
Query: 237 agagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccag 296
|||| || |||||||| | |||| || | |||| |||||| |||||| ||||||| |
Sbjct: 37349907 agaggac-tgggagaagcctctgctgacagctcttgccattgttgcctctgaaaacag-g 37349964
Query: 297 ccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctg 356
| | | |||| ||||||||| || |||||| ||| | ||||||||| ||||||||
Sbjct: 37349965 acaacattggtgttgtatcctccaagattactggtcagtgcactgtgctgaggtttgctg 37350024
Query: 357 ctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccaga 416
|||||||||||||||||||||| |||||| ||||||||||||||||| || |||| ||
Sbjct: 37350025 ctgccactggagccactcctatcgctggctgcttcactcctggaaccctccctaatgagt 37350084
Query: 417 tccaggcagccttccgggagccaagacttct 447
|||| ||| ||||| ||||||||||||||||
Sbjct: 37350085 tccaagcaaccttctgggagccaagacttct 37350115
Score = 97.6 bits (49), Expect = 1e-17
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 59 gtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagag 118
|||||||||||||| |||||||||||||| ||| |||| |||||||| | || || |||
Sbjct: 47865532 gtaacttaaagggaaactttcacaatgtctggaacccttgatgtcctttatataaaggag 47865591
Query: 119 gaggatgtcctcaagttccttgcagcaggaacc 151
|||||||||||||| ||||||| ||||||||||
Sbjct: 47865592 gaggatgtcctcaaattccttgtagcaggaacc 47865624
Score = 73.8 bits (37), Expect = 2e-10
Identities = 74/85 (87%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 887 gctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggta 946
|||||||| ||||||| || ||| |||||||||||||||| |||||||||||| ||||
Sbjct: 37350518 gctcagcccaccactggggactgggctgcagctcccactgctcaggccactgaacaggta 37350577
Query: 947 gg-aacaaccactgagtggtcttaa 970
|| || ||||||||||||||||||
Sbjct: 37350578 ggaaatgaccactgagtggtcttaa 37350602
Score = 73.8 bits (37), Expect = 2e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 190 gtacatctacaaaaggaaa--agtgatggcatctacatcataaatctgaagagaacctgg 247
|||||||| | |||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 40361799 gtacatctgccaaaggaaataagtgatggcatctccatcataaacctgaagaggacctgg 40361740
Query: 248 gagaaacttctg 259
|||||||||||
Sbjct: 40361739 cagaaacttctg 40361728
Score = 67.9 bits (34), Expect = 1e-08
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 457 tgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccat 516
|||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| || | |
Sbjct: 134479377 tgatcccagggccgaccaccagtctctcacag-ggcatcttatgttaacctgtctgcagt 134479319
Query: 517 tgctctgtgtaacacagactcacctc 542
|||||| | ||||||||||| ||||
Sbjct: 134479318 ggctctgggcaacacagactctcctc 134479293
Score = 67.9 bits (34), Expect = 1e-08
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 457 tgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccat 516
|||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| || | |
Sbjct: 134502836 tgatcccagggccgaccaccagtctctcacag-ggcatcttatgttaacctgtctgcagt 134502778
Query: 517 tgctctgtgtaacacagactcacctc 542
|||||| | ||||||||||| ||||
Sbjct: 134502777 ggctctgggcaacacagactctcctc 134502752
Score = 63.9 bits (32), Expect = 2e-07
Identities = 131/163 (80%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 396 ctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctggtggtta 455
|||||||||| ||||| ||||| |||| || ||||| ||| | | | ||||||||| |||
Sbjct: 40361569 ctggaacctttactaatcagattcaggaaggcttccaggaactacgtcttctggtgttta 40361510
Query: 456 ctgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctacca 515
||||||||| || ||||| ||||||| | ||| |||||||| |||||| || ||
Sbjct: 40361509 ttgatcccagagcctaccactagcctcttccggagctgtcttatgtgaacctgtctgcct 40361450
Query: 516 ttgctctgtgtaacacagactcacctctgcgttatgtggacat 558
|||||||||||| |||||||| ||||||| ||||| |||||
Sbjct: 40361449 ttgctctgtgta--acagactctcctctgcactatgttgacat 40361409
Score = 60.0 bits (30), Expect = 3e-06
Identities = 95/114 (83%), Gaps = 2/114 (1%)
Strand = Plus / Minus
Query: 689 ttctacagagatcctgaa-gagattgaaaaggaagagcaggccgcagctgagaaggctgt 747
||||||||| |||||||| ||||||| |||||||| |||||| | |||| |||| |||
Sbjct: 40361298 ttctacaga-atcctgaaagagattgtaaaggaagtgcaggctgatgctggaaaggatgt 40361240
Query: 748 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgc 801
|||| ||||||||||||| ||||| || || |||||||||||||| |||||
Sbjct: 40361239 gacccaggaggaatttcaaggtgagcataccgctccagctcctgagtttactgc 40361186
>Sscrofa_Chr04
|| Length = 143465943
Score = 597 bits (301), Expect = e-168
Identities = 754/898 (83%), Gaps = 14/898 (1%)
Strand = Plus / Plus
Query: 76 tttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagtt 135
|||||||||||| |||||||| | ||| ||| |||||||| ||||||||||| |||| ||
Sbjct: 35717278 tttcacaatgtctggagcccttgctgttctgaaaatgaaaaaggaggatgtcttcaaatt 35717337
Query: 136 ccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacat 195
|| |||||||||||||||| | | |||| |||| ||||||| ||||||||||||||||||
Sbjct: 35717338 ccctgcagcaggaacccacttagttggccccaatcttgactgccaaatggaacagtacat 35717397
Query: 196 ctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaact 255
||||| | || ||||||||||||||| ||| |||||||||||||| | ||| |||| ||
Sbjct: 35717398 ctacagatgggaaagtgatggcatctgcattgtaaatctgaagagaccatggaagaagct 35717457
Query: 256 tctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatc 315
||||||||| | ||||||||| | || ||||||||||||| | |||||||||| |||| |
Sbjct: 35717458 tctgttggcagttcgtgccattgctgtcattgaaaacccacctgatgtcagtgccatacc 35717517
Query: 316 ctccaggaatactggccagcga--gctgtgctgaagtttgctgctgccactggagccact 373
|| ||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 35717518 cttcaggaatactgaccagcgaatactgtgctgaa-tttgctgctgctactggagccact 35717576
Query: 374 cctattgctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgg 433
||||| |||| | ||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 35717577 cctatggctgtctgcttcactcctggaacctttgccgaccagatccaggcagccct---- 35717632
Query: 434 gagccaagacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcc 493
|||| ||||| ||||||||||| |||||| |||||||| ||| ||||||||||||
Sbjct: 35717633 ---ccaaaacttcgggtggttactggtcccagatctgaccacaagcttctcacagaggct 35717689
Query: 494 tcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtg 553
|| ||||||||| ||||| |||||||||||||||||||| | |||||| ||||||||
Sbjct: 35717690 gctcatgttaaccctcctactgttgctctgtgtaacacagaccctcctctgtgttatgtg 35717749
Query: 554 gacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatg 613
||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 35717750 gacattgccatcctacgcaacaa-tagggggctcactcagtgggtctgatgtggtagatg 35717808
Query: 614 ctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtc 673
|| | ||||| || || ||||| ||||||||||||| | |||||| || ||| | |
Sbjct: 35717809 cttggccgggtggtcctatacatgcctggcaccatctcctgtgaacactcacaggaggcc 35717868
Query: 674 atgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagcaggccgca 733
|||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 35717869 atgcctgatctctacttctacagagatcctgaagagattgaaaaggaggaacagg-agca 35717927
Query: 734 gctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgag 793
|||||| ||| ||||||||||||||||||||||||||||| | || ||||||| ||||
Sbjct: 35717928 gctgagcaggtggtgaccaaggaggaatttcagggtgaatgcatggctccagctcttgag 35717987
Query: 794 ttcactgccactcaacctgaggtggcagattggtcc-gaaggtgtgcaggtgccttctgt 852
||||||| ||||||| |||| ||||| | ||| || ||||| |||||||| | |||||
Sbjct: 35717988 ttcactgttactcaacatgagatggcaaactgggcctgaaggcatgcaggtgtcctctgt 35718047
Query: 853 gcccatccagcaattccctactgaagattggagtgctcagcctaccactgaagattggtc 912
|||| ||||| || ||||| |||| || ||||| |||| ||| ||||| |||| ||
Sbjct: 35718048 gcccctccagaaactccctcctgaggactggagaactcaacctgccactaaaga-ccatc 35718106
Query: 913 tgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaa 970
||||||||| ||||| ||| || ||||||||| | |||||| |||||||||||||||
Sbjct: 35718107 tgcagctcctactgctcagacctctgaatggggaagaacaagaactgagtggtcttaa 35718164
Score = 204 bits (103), Expect = 7e-50
Identities = 423/524 (80%), Gaps = 18/524 (3%)
Strand = Plus / Minus
Query: 62 acttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggag 121
||||||||||||| ||| ||||| ||| ||||||| ||||| |||||||||| | ||
Sbjct: 115143147 acttaaagggagatttt-acaatatccagagcccttgatgttatgcaaatgaa---gaag 115143092
Query: 122 gatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaa 181
|||||||||| |||||| |||||||||||| | | |||||||| | |||||||||||
Sbjct: 115143091 gatgtcctcagattccttaaggcaggaacccacttagatggcaccagctttgacttccaa 115143032
Query: 182 atggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 241
|| |||| |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 115143031 atagaaccc-----ctacaaaaggtaaagtgatagcatctacatcataaatctggagaga 115142977
Query: 242 acctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgat 301
|| ||| ||| |||||| |||| ||||||||| ||||||||| | |||||| |||
Sbjct: 115142976 acttggcggaagcttctgctggccattcgtgccattgttgccattcatttcccagctgat 115142917
Query: 302 gtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcc 361
||| |||||||| ||||||| | ||| |||||||||| | ||||||||||||
Sbjct: 115142916 gtct------tatcctccgtgaatactctc-agccagctgtgctgcactttgctgctgcc 115142864
Query: 362 actggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccag 421
||||||||||||||| || ||| | ||||||||| |||| | |||||| |||| | ||
Sbjct: 115142863 actggagccactcctgctg-tgggcacttcactcccggaagcctcactacccagttgtag 115142805
Query: 422 gcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcct 481
||||||| | ||||| |||||||| ||||||| |||||| ||||||||| |||||||||
Sbjct: 115142804 gcagcct-cagggagtcaagactttcggtggttcctgatctcagggctgagcaccagcct 115142746
Query: 482 ctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacct 541
| |||||| || ||||||||||| |||||||||| ||| |||||||||||| ||
Sbjct: 115142745 cccacagaagcatcttatgttaatctgcctaccagccctccccataacacagactctccg 115142686
Query: 542 ctgcgttatgtggacattgccatcccgtgcaacaacaagggagc 585
||| |||||||||| ||||||| || ||| ||||||||||||
Sbjct: 115142685 ctgtgttatgtggatattgccacccaatgctgcaacaagggagc 115142642
Score = 135 bits (68), Expect = 6e-29
Identities = 230/283 (81%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 688 cttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgt 747
||||||||| ||||| ||||||||||| ||||| | ||| || || ||||||| ||||||
Sbjct: 115142578 cttctacagggatcccgaagagattgacaaggatgggcaagcggccgctgagacggctgt 115142519
Query: 748 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactca 807
||| |||||| |||||||| || |||||| | |||||||| |||||||||||||||||
Sbjct: 115142518 gactaaggagagatttcaggctgtatggaccactccagctcccgagttcactgccactca 115142459
Query: 808 acctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaatt 867
|||||| || |||| || |||||||| |||| || ||| ||||||| ||||||| ||
Sbjct: 115142458 acctgaagtcacagactgatccgaaggcgtgcgggcgccctctgtgcgtgtccagcagtt 115142399
Query: 868 ccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgc 927
||| ||||| | | ||| |||||||| ||| |||| || |||||||||| ||||| ||
Sbjct: 115142398 ccccactgacggtcagagggctcagcccacccctgaggactggtctgcag--cccaccgc 115142341
Query: 928 gcaggccactgaatgggtaggaacaaccactgagtggtcttaa 970
||| || | | ||||| |||||||||| ||||||||||||
Sbjct: 115142340 tcagacccccacaagggtaagaacaaccaccgagtggtcttaa 115142298
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 909 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaacc 955
||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 136355360 ggtctgcagctcccactgctcaggccactgagtgggtaggaacaacc 136355314
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,708,872
Number of extensions: 503
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 149
Length of query: 1069
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1048
Effective length of database: 2,808,413,156
Effective search space: 2943216987488
Effective search space used: 2943216987488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)