Animal-Genome cDNA 20110601C-000882

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000882
         (1097 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193236.1| polyubiquitin-C [Bos taurus].                     392   e-109
Alignment   gi|NP_776558.1| polyubiquitin-B [Bos taurus].                        389   e-108
Alignment   gi|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].        276   3e-74
Alignment   gi|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].        276   3e-74
Alignment   gi|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].        224   2e-59
Alignment   gi|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].        218   7e-57
Alignment   gi|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos ta...   160   2e-39
Alignment   gi|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos tau...   151   9e-37
Alignment   gi|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos tauru...   151   1e-36
Alignment   gi|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].         149   6e-36

>ref|NP_001193236.1| polyubiquitin-C [Bos taurus].
          Length = 690

 Score =  392 bits (1007), Expect = e-109
 Identities = 209/239 (87%), Positives = 215/239 (89%), Gaps = 1/239 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLKVAAIS 1083
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+   +S
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVLS 687



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 265  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 325  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 378



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 341  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 401  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 454



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 530



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 606



 Score =  387 bits (995), Expect = e-108
 Identities = 204/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226


>ref|NP_776558.1| polyubiquitin-B [Bos taurus].
          Length = 305

 Score =  389 bits (998), Expect = e-108
 Identities = 207/234 (88%), Positives = 212/234 (90%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  388 bits (997), Expect = e-108
 Identities = 205/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 6e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  276 bits (705), Expect = 3e-74
 Identities = 153/228 (67%), Positives = 166/228 (72%), Gaps = 1/228 (0%)
 Frame = -3

Query: 1065 QTEDQMESDSFW-MCNQKECGHLPAAACKDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQG 889
            QTEDQ++   F  +  +K        A KDEPLLVRGNAF           GVTGLHLQG
Sbjct: 233  QTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQG 292

Query: 888  DGLPVQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXX 709
            DGL  QGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLVGGNA     
Sbjct: 293  DGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGNALLILD 352

Query: 708  XXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC 529
                   GVTGLH QGDGLAGQGLHE+LHTTPQT++Q++G LFLDVVIRKSAAI QLLA 
Sbjct: 353  LGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAG 412

Query: 528  KDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 385
            KDEPLLV GNA            GVTGLHLQGDGLAGQG HEDLHFDL
Sbjct: 413  KDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLHFDL 460



 Score =  270 bits (691), Expect = 1e-72
 Identities = 150/225 (66%), Positives = 164/225 (72%), Gaps = 1/225 (0%)
 Frame = -3

Query: 1065 QTEDQMESDSFW-MCNQKECGHLPAAACKDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQG 889
            QT+DQ++   F  +  +K        A KDEPLLVRGNAF           GVTGLH QG
Sbjct: 157  QTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHFQG 216

Query: 888  DGLPVQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXX 709
            DGL  QGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV GNAF    
Sbjct: 217  DGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILD 276

Query: 708  XXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC 529
                   GVTGLHLQGDGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAAI QLLA 
Sbjct: 277  LGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAG 336

Query: 528  KDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 394
            KDEPLLVGGNA            GVTGLH QGDGLAGQGLHE+LH
Sbjct: 337  KDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLH 381



 Score =  208 bits (530), Expect = 6e-54
 Identities = 112/152 (73%), Positives = 120/152 (78%)
 Frame = -3

Query: 849 TTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLH 670
           TTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV GNAF           GVTGLH
Sbjct: 154 TTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLH 213

Query: 669 LQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXX 490
            QGDGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAAI QLLA KDEPLLV GNA  
Sbjct: 214 FQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFL 273

Query: 489 XXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 394
                     GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 274 ILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLH 305


>ref|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  276 bits (705), Expect = 3e-74
 Identities = 153/228 (67%), Positives = 166/228 (72%), Gaps = 1/228 (0%)
 Frame = -3

Query: 1065 QTEDQMESDSFW-MCNQKECGHLPAAACKDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQG 889
            QTEDQ++   F  +  +K        A KDEPLLVRGNAF           GVTGLHLQG
Sbjct: 233  QTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQG 292

Query: 888  DGLPVQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXX 709
            DGL  QGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLVGGNA     
Sbjct: 293  DGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGGNALLILD 352

Query: 708  XXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC 529
                   GVTGLH QGDGLAGQGLHE+LHTTPQT++Q++G LFLDVVIRKSAAI QLLA 
Sbjct: 353  LGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAG 412

Query: 528  KDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 385
            KDEPLLV GNA            GVTGLHLQGDGLAGQG HEDLHFDL
Sbjct: 413  KDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLHFDL 460



 Score =  270 bits (691), Expect = 1e-72
 Identities = 150/225 (66%), Positives = 164/225 (72%), Gaps = 1/225 (0%)
 Frame = -3

Query: 1065 QTEDQMESDSFW-MCNQKECGHLPAAACKDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQG 889
            QT+DQ++   F  +  +K        A KDEPLLVRGNAF           GVTGLH QG
Sbjct: 157  QTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHFQG 216

Query: 888  DGLPVQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXX 709
            DGL  QGLHEDLHTTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV GNAF    
Sbjct: 217  DGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILD 276

Query: 708  XXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC 529
                   GVTGLHLQGDGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAAI QLLA 
Sbjct: 277  LGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAG 336

Query: 528  KDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 394
            KDEPLLVGGNA            GVTGLH QGDGLAGQGLHE+LH
Sbjct: 337  KDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLH 381



 Score =  208 bits (530), Expect = 6e-54
 Identities = 112/152 (73%), Positives = 120/152 (78%)
 Frame = -3

Query: 849 TTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLH 670
           TTPQT++Q++  LFLDVVIRKSAAIFQLLA KDEPLLV GNAF           GVTGLH
Sbjct: 154 TTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLH 213

Query: 669 LQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXX 490
            QGDGLAGQGLHEDLHTTPQT++Q++G LFLDVVIRKSAAI QLLA KDEPLLV GNA  
Sbjct: 214 FQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFL 273

Query: 489 XXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 394
                     GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 274 ILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLH 305


>ref|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 752

 Score =  224 bits (570), Expect(2) = 2e-59
 Identities = 119/197 (60%), Positives = 139/197 (70%)
 Frame = -3

Query: 984  KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
            KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 421  KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFL 480

Query: 804  DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
            DVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDL
Sbjct: 481  DVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDL 540

Query: 624  HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
            H T + ++Q++ GLFLDVV+R+ A I QL   KD+PLLV G+A            GVTGL
Sbjct: 541  HPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGL 600

Query: 444  HLQGDGLAGQGLHEDLH 394
            HLQGDGLAGQGLHEDLH
Sbjct: 601  HLQGDGLAGQGLHEDLH 617



 Score = 24.6 bits (52), Expect(2) = 2e-59
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ AAIFQL P K
Sbjct: 407  VVRQGAAIFQLFPGK 421



 Score =  223 bits (569), Expect(2) = 3e-59
 Identities = 119/197 (60%), Positives = 139/197 (70%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 41  KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFL 100

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQ DGLAGQGLHEDL
Sbjct: 101 DVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDL 160

Query: 624 HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
           H T + ++Q++ GLFLDVV+R+ AAI QL   KD+PLLV G+A            GVTGL
Sbjct: 161 HPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGL 220

Query: 444 HLQGDGLAGQGLHEDLH 394
           HLQGDGLAGQGLHEDLH
Sbjct: 221 HLQGDGLAGQGLHEDLH 237



 Score = 24.6 bits (52), Expect(2) = 3e-59
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ AAIFQL P K
Sbjct: 27   VVRQGAAIFQLFPGK 41



 Score =  223 bits (569), Expect(2) = 1e-58
 Identities = 119/197 (60%), Positives = 139/197 (70%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQ DGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 345 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFL 404

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDL
Sbjct: 405 DVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDL 464

Query: 624 HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
           H T + ++Q++ GLFLDVV+R+ AAI QL   KD+PLLV G+A            GVTGL
Sbjct: 465 HPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGL 524

Query: 444 HLQGDGLAGQGLHEDLH 394
           HLQGDGLAGQGLHEDLH
Sbjct: 525 HLQGDGLAGQGLHEDLH 541



 Score = 22.7 bits (47), Expect(2) = 1e-58
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ A IFQL P K
Sbjct: 331  VVRQGAPIFQLFPGK 345



 Score =  221 bits (564), Expect(2) = 4e-58
 Identities = 118/197 (59%), Positives = 138/197 (70%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 269 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFL 328

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQ DGLAGQGLHEDL
Sbjct: 329 DVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDL 388

Query: 624 HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
           H T + ++Q++ GLFLDVV+R+ AAI QL   KD+PLLV G+A            GVTGL
Sbjct: 389 HPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGL 448

Query: 444 HLQGDGLAGQGLHEDLH 394
           HLQGDGLAGQGLHEDLH
Sbjct: 449 HLQGDGLAGQGLHEDLH 465



 Score = 22.7 bits (47), Expect(2) = 4e-58
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ A IFQL P K
Sbjct: 255  VVRQGAPIFQLFPGK 269



 Score =  219 bits (558), Expect(2) = 5e-58
 Identities = 117/197 (59%), Positives = 137/197 (69%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQ DGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 117 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFL 176

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDL
Sbjct: 177 DVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDL 236

Query: 624 HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
           H T + ++Q++ GL LDVV+R+ A I QL   KD+PLLV G+A            GVTGL
Sbjct: 237 HPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGL 296

Query: 444 HLQGDGLAGQGLHEDLH 394
           HLQGDGLAGQGLHEDLH
Sbjct: 297 HLQGDGLAGQGLHEDLH 313



 Score = 24.6 bits (52), Expect(2) = 5e-58
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ AAIFQL P K
Sbjct: 103  VVRQGAAIFQLFPGK 117



 Score =  217 bits (553), Expect(2) = 2e-57
 Identities = 116/197 (58%), Positives = 136/197 (69%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGL L
Sbjct: 193 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLL 252

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDL
Sbjct: 253 DVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDL 312

Query: 624 HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
           H T + ++Q++ GLFLDVV+R+ A I QL   KD+PLLV G+A            GVTGL
Sbjct: 313 HPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGL 372

Query: 444 HLQGDGLAGQGLHEDLH 394
           HLQ DGLAGQGLHEDLH
Sbjct: 373 HLQSDGLAGQGLHEDLH 389



 Score = 24.6 bits (52), Expect(2) = 2e-57
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ AAIFQL P K
Sbjct: 179  VVRQGAAIFQLFPGK 193



 Score =  211 bits (537), Expect(2) = 1e-55
 Identities = 112/197 (56%), Positives = 134/197 (68%)
 Frame = -3

Query: 984  KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
            KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 497  KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFL 556

Query: 804  DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
            DVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDL
Sbjct: 557  DVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDL 616

Query: 624  HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
            H T + ++Q++ GL LDVV+R+ AAI QL   KD+PLLV G+A            GVTGL
Sbjct: 617  HPTSEAEDQVQSGLLLDVVVRQGAAIFQLFPGKDQPLLVWGDAFFFLYLPLDVLDGVTGL 676

Query: 444  HLQGDGLAGQGLHEDLH 394
            HLQ DG   +GLH+DLH
Sbjct: 677  HLQSDGFTSEGLHKDLH 693



 Score = 24.6 bits (52), Expect(2) = 1e-55
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ AAIFQL P K
Sbjct: 483  VVRQGAAIFQLFPGK 497



 Score =  173 bits (439), Expect = 2e-43
 Identities = 91/147 (61%), Positives = 107/147 (72%)
 Frame = -3

Query: 834 QNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDG 655
           Q+Q++SGLFLDVV+R+ AAIFQL   KD+PLLV G+A            GVTGLHLQGDG
Sbjct: 15  QDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDG 74

Query: 654 LAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXX 475
           LAGQGLHEDLH T + ++Q++ GLFLDVV+R+ AAI QL   KD+PLLV G+A       
Sbjct: 75  LAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLG 134

Query: 474 XXXXXGVTGLHLQGDGLAGQGLHEDLH 394
                GVTGLHLQ DGLAGQGLHEDLH
Sbjct: 135 LDVLDGVTGLHLQSDGLAGQGLHEDLH 161



 Score =  132 bits (333), Expect(2) = 1e-31
 Identities = 69/125 (55%), Positives = 85/125 (68%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGL L
Sbjct: 573 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLL 632

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ AAIFQL   KD+PLLV G+AF           GVTGLHLQ DG   +GLH+DL
Sbjct: 633 DVVVRQGAAIFQLFPGKDQPLLVWGDAFFFLYLPLDVLDGVTGLHLQSDGFTSEGLHKDL 692

Query: 624 HTTPQ 610
           H++ +
Sbjct: 693 HSSSE 697



 Score = 22.7 bits (47), Expect(2) = 1e-31
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 1025 VIRKSAAIFQLLPAK 981
            V+R+ A IFQL P K
Sbjct: 559  VVRQGAPIFQLFPGK 573


>ref|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 481

 Score =  218 bits (555), Expect = 7e-57
 Identities = 122/232 (52%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
 Frame = -3

Query: 1086 WRNSSHLQTEDQMESDSFWMCNQKECGHL-PAAACKDEPLLVRGNAFXXXXXXXXXXXGV 910
            W      + EDQ++S  F     ++   +      KD+PLLV G+A            GV
Sbjct: 155  WEVGDSKKAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGV 214

Query: 909  TGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGG 730
            TGLHLQ DGL  QGLHEDLH T + ++Q++SGLFLDVV+R+ A IFQL   KD+PLLV G
Sbjct: 215  TGLHLQSDGLAGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWG 274

Query: 729  NAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAA 550
            +A            GVTGLHLQGDGLAGQGLHEDLH T + ++Q++ GL LDVV+R+ A 
Sbjct: 275  DALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAP 334

Query: 549  ILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 394
            I QL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 335  IFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLH 386



 Score =  218 bits (555), Expect = 7e-57
 Identities = 116/197 (58%), Positives = 136/197 (69%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGL L
Sbjct: 266 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLL 325

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQGDGLAGQGLHEDL
Sbjct: 326 DVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDL 385

Query: 624 HTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGNAXXXXXXXXXXXXGVTGL 445
           H T + ++Q++ GLFLDVV+R+ A I QL   KD+PLLV G+A            GVTGL
Sbjct: 386 HPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLALDVLDGVTGL 445

Query: 444 HLQGDGLAGQGLHEDLH 394
           HLQGDG AGQGLHEDLH
Sbjct: 446 HLQGDGFAGQGLHEDLH 462



 Score =  140 bits (353), Expect = 2e-33
 Identities = 74/125 (59%), Positives = 86/125 (68%)
 Frame = -3

Query: 984 KDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQGDGLPVQGLHEDLHTTPQTQNQMESGLFL 805
           KD+PLLV G+A            GVTGLHLQGDGL  QGLHEDLH T + ++Q++SGLFL
Sbjct: 342 KDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFL 401

Query: 804 DVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDL 625
           DVV+R+ A IFQL   KD+PLLV G+A            GVTGLHLQGDG AGQGLHEDL
Sbjct: 402 DVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLALDVLDGVTGLHLQGDGFAGQGLHEDL 461

Query: 624 HTTPQ 610
           H T +
Sbjct: 462 HPTSE 466


>ref|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos taurus].
          Length = 88

 Score =  160 bits (405), Expect = 2e-39
 Identities = 81/86 (94%), Positives = 83/86 (96%)
 Frame = +1

Query: 364 QRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 543
           + L +HSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQL
Sbjct: 2   RHLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQL 61

Query: 544 EDGRTLSDYNIQKESTLHLVLRLRGG 621
           EDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 62  EDGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +1

Query: 595 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 774
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 775 DGRTLSDYNIQKESTLHLVLRLRGG 849
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87



 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 55/83 (66%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
 Frame = +1

Query: 823  HLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWK 1002
            HL +  +  MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AG   +
Sbjct: 3    HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 1003 MA-ALFLITHPERVTLHLVLRLK 1068
                L      +  TLHLVLRL+
Sbjct: 63   DGRTLSDYNIQKESTLHLVLRLR 85


>ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus].
          Length = 128

 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 2e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].
          Length = 77

 Score =  149 bits (375), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  149 bits (375), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 53/74 (71%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLK 1068
              +  TLHLVLRL+
Sbjct: 61   IQKESTLHLVLRLR 74


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,183,328
Number of extensions: 1190630
Number of successful extensions: 3659
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3582
Number of HSP's successfully gapped: 103
Length of query: 365
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,240,222
Effective search space: 3716697942
Effective search space used: 3716697942
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000882
         (1097 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Ca...   391   e-109
Alignment   gi|XP_536651.2| PREDICTED: similar to ubiquitin B precursor iso...   388   e-108
Alignment   gi|XP_863683.1| PREDICTED: similar to ubiquitin B precursor iso...   298   8e-81
Alignment   gi|XP_863640.1| PREDICTED: similar to ubiquitin B precursor iso...   280   1e-75
Alignment   gi|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis fami...   165   8e-41
Alignment   gi|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal p...   155   8e-38
Alignment   gi|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Ca...   152   4e-37
Alignment   gi|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precurso...   151   9e-37
Alignment   gi|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus ...   151   9e-37
Alignment   gi|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal p...   146   3e-35

>ref|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Canis familiaris].
          Length = 381

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 265  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 325  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 378



 Score =  390 bits (1003), Expect = e-109
 Identities = 206/226 (91%), Positives = 210/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (764), Expect = 5e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 852
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 341 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 381


>ref|XP_536651.2| PREDICTED: similar to ubiquitin B precursor isoform 1 [Canis
            familiaris].
          Length = 229

 Score =  388 bits (997), Expect = e-108
 Identities = 205/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 6e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_863683.1| PREDICTED: similar to ubiquitin B precursor isoform 3 [Canis
           familiaris].
          Length = 153

 Score =  298 bits (762), Expect = 8e-81
 Identities = 152/152 (100%), Positives = 152/152 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  244 bits (622), Expect = 1e-64
 Identities = 130/150 (86%), Positives = 134/150 (89%), Gaps = 1/150 (0%)
 Frame = +1

Query: 622  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802  IQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 981
            IQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 982  FAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            FAG   +    L      +  TLHLVLRL+
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150



 Score =  151 bits (382), Expect = 9e-37
 Identities = 78/84 (92%), Positives = 79/84 (94%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550 GRTLSDYNIQKESTLHLVLRLRGG 621
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGG 152


>ref|XP_863640.1| PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis
           familiaris].
          Length = 181

 Score =  280 bits (717), Expect = 1e-75
 Identities = 151/180 (83%), Positives = 151/180 (83%), Gaps = 28/180 (15%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 669
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 670 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  226 bits (577), Expect = 2e-59
 Identities = 129/178 (72%), Positives = 133/178 (74%), Gaps = 29/178 (16%)
 Frame = +1

Query: 622  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
            M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802  IQKESTLHLVLRLRGGMQIFVKTLDGQTITLE---------------------------- 897
            IQKESTLHLVLRLRGGMQIFVKTL G+TITLE                            
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 898  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            VEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 121  VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 178



 Score =  151 bits (382), Expect = 9e-37
 Identities = 78/84 (92%), Positives = 79/84 (94%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 97  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 156

Query: 550 GRTLSDYNIQKESTLHLVLRLRGG 621
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 157 GRTLSDYNIQKESTLHLVLRLRGG 180


>ref|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis familiaris].
          Length = 111

 Score =  165 bits (417), Expect = 8e-41
 Identities = 86/100 (86%), Positives = 90/100 (90%)
 Frame = +1

Query: 577 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 756
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 757 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLD 876
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG     + LD
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGGNADLCEDLD 110



 Score =  145 bits (366), Expect = 7e-35
 Identities = 76/84 (90%), Positives = 77/84 (91%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           LCL     MQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIFA KQLED
Sbjct: 20  LCLRGG--MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIFASKQLED 77

Query: 550 GRTLSDYNIQKESTLHLVLRLRGG 621
           G TLSDYNIQKESTLHLVLRLRGG
Sbjct: 78  GCTLSDYNIQKESTLHLVLRLRGG 101



 Score =  113 bits (282), Expect = 4e-25
 Identities = 63/89 (70%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
 Frame = +1

Query: 805  QKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 984
            +K +TLHLVL LRGGMQIFVKTL G+TITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11   KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 985  AGSSWK-MAALFLITHPERVTLHLVLRLK 1068
            A    +    L      +  TLHLVLRL+
Sbjct: 71   ASKQLEDGCTLSDYNIQKESTLHLVLRLR 99


>ref|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 228

 Score =  155 bits (391), Expect = 8e-38
 Identities = 78/84 (92%), Positives = 80/84 (95%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           +C  +  KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 65  ICGGTAAKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 124

Query: 550 GRTLSDYNIQKESTLHLVLRLRGG 621
           GRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 125 GRTLSDYNIQKESTLHLVLRLRGG 148



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 73   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 133  IQKESTLHLVLRLRGGA 149


>ref|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Canis familiaris].
          Length = 87

 Score =  152 bits (385), Expect = 4e-37
 Identities = 76/79 (96%), Positives = 78/79 (98%)
 Frame = +1

Query: 385 QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 564
           QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS
Sbjct: 8   QVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 67

Query: 565 DYNIQKESTLHLVLRLRGG 621
           DYNIQK+STLHL+L LRGG
Sbjct: 68  DYNIQKKSTLHLILHLRGG 86



 Score =  147 bits (371), Expect = 2e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 802 IQKESTLHLVLRLRGG 849
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86



 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 1/74 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 11   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 1027 HPERVTLHLVLRLK 1068
              ++ TLHL+L L+
Sbjct: 71   IQKKSTLHLILHLR 84


>ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precursor [Canis lupus
           familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 2e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 2e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 161

 Score =  146 bits (369), Expect = 3e-35
 Identities = 74/80 (92%), Positives = 76/80 (95%)
 Frame = +1

Query: 382 SQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 561
           ++ KMQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 2   AEAKMQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTL 61

Query: 562 SDYNIQKESTLHLVLRLRGG 621
           SDYNIQKEST HLVLRLRGG
Sbjct: 62  SDYNIQKESTPHLVLRLRGG 81



 Score =  143 bits (361), Expect = 3e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 802 IQKESTLHLVLRLRGG 849
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 52/77 (67%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAG   +    L    
Sbjct: 6    MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  T HLVLRL+  A
Sbjct: 66   IQKESTPHLVLRLRGGA 82


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,221,747
Number of extensions: 1228214
Number of successful extensions: 3763
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 3706
Number of HSP's successfully gapped: 70
Length of query: 365
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 261
Effective length of database: 15,407,560
Effective search space: 4021373160
Effective search space used: 4021373160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000882
         (1097 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_066289.2| polyubiquitin-C [Homo sapiens].                      391   e-109
Alignment   gi|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].            390   e-109
Alignment   gi|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [...   151   9e-37
Alignment   gi|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precurso...   151   9e-37
Alignment   gi|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   1e-36
Alignment   gi|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_006147.1| NEDD8 precursor [Homo sapiens].                       96   4e-20
Alignment   gi|NP_006389.2| ubiquitin D [Homo sapiens].                           85   1e-16
Alignment   gi|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sa...    75   1e-13

>ref|NP_066289.2| polyubiquitin-C [Homo sapiens].
          Length = 685

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 341  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 401  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 454



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 530



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 606



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 682



 Score =  388 bits (996), Expect = e-108
 Identities = 207/234 (88%), Positives = 212/234 (90%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            P DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  388 bits (996), Expect = e-108
 Identities = 207/234 (88%), Positives = 212/234 (90%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLED
Sbjct: 145  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLED 204

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 265  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 325  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 378



 Score =  387 bits (995), Expect = e-108
 Identities = 205/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIP DQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (764), Expect = 5e-81
 Identities = 154/161 (95%), Positives = 156/161 (96%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 852
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].
          Length = 229

 Score =  390 bits (1003), Expect = e-109
 Identities = 206/226 (91%), Positives = 210/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 6e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 2e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 9e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 2e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|NP_006147.1| NEDD8 precursor [Homo sapiens].
          Length = 81

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 574 IQKESTLHLVLRLRGG 621
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 802 IQKESTLHLVLRLRGG 849
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSW---KMAALFL 1020
            M I VKTL G+ I +++EP+D +E +K ++++KEGIPP QQRLI++G      K AA + 
Sbjct: 1    MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 1021 ITHPERVTLHLVLRLK 1068
            I       LHLVL L+
Sbjct: 61   ILGGS--VLHLVLALR 74


>ref|NP_006389.2| ubiquitin D [Homo sapiens].
          Length = 165

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           LC+H        V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+ 
Sbjct: 8   LCVH--------VRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKP 59

Query: 550 GRTLSDYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKI 711
            R+LS Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I
Sbjct: 60  RRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMI 119

Query: 712 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           + K GI P+ Q +   GK+LEDG+ ++DY I+K + L L     GG
Sbjct: 120 ETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165


>ref|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sapiens].
          Length = 165

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 3/151 (1%)
 Frame = +1

Query: 406 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQ 579
           VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+   + 
Sbjct: 7   VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG 66

Query: 580 KESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 756
             ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F
Sbjct: 67  PGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126

Query: 757 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
            GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 127 EGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
 Frame = +1

Query: 343 DSV*LASQRLCLHSQV---------KMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 495
           D V LASQ L   S V          + I V+   G++ T EV  + T+ ++K ++   E
Sbjct: 56  DRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLE 115

Query: 496 GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 621
           G+  D   L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 116 GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,310,556
Number of extensions: 1205554
Number of successful extensions: 3569
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3516
Number of HSP's successfully gapped: 58
Length of query: 365
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 261
Effective length of database: 14,868,908
Effective search space: 3880784988
Effective search space used: 3880784988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000882
         (1097 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062613.3| polyubiquitin-C [Mus musculus].                      391   e-109
Alignment   gi|NP_035794.1| polyubiquitin-B [Mus musculus].                      391   e-109
Alignment   gi|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [M...   151   8e-37
Alignment   gi|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like...   151   8e-37
Alignment   gi|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus muscul...   151   8e-37
Alignment   gi|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precurs...   151   1e-36
Alignment   gi|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   1e-36
Alignment   gi|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [M...   149   4e-36
Alignment   gi|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [M...   148   6e-36
Alignment   gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ...   108   7e-24

>ref|NP_062613.3| polyubiquitin-C [Mus musculus].
          Length = 734

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 265  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 324

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 325  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 378



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 221  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 280

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 281  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 340

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 341  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 400

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 401  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 454



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 297  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 356

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 357  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 416

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 417  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 476

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 477  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 530



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 373  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 433  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 492

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 493  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 552

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 553  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 606



 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 449  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 509  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 568

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 569  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 628

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 629  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 682



 Score =  390 bits (1003), Expect = e-109
 Identities = 206/226 (91%), Positives = 210/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  335 bits (858), Expect = 5e-92
 Identities = 174/187 (93%), Positives = 178/187 (95%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 525  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 585  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 644

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITL+VEPS
Sbjct: 645  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPS 704

Query: 910  DTIENVK 930
             T + VK
Sbjct: 705  VTTKKVK 711


>ref|NP_035794.1| polyubiquitin-B [Mus musculus].
          Length = 305

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  390 bits (1003), Expect = e-109
 Identities = 206/226 (91%), Positives = 210/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 5e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  151 bits (382), Expect = 8e-37
 Identities = 79/96 (82%), Positives = 85/96 (88%)
 Frame = +1

Query: 337 RGDSV*LASQRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 516
           R D + L+ QR    +   +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQ
Sbjct: 59  RKDRLSLSLQRGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQ 118

Query: 517 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 624
           RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 119 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +1

Query: 553 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 714
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 715 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 852
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  100 bits (248), Expect = 3e-21
 Identities = 62/111 (55%), Positives = 74/111 (66%), Gaps = 7/111 (6%)
 Frame = +1

Query: 781  RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLDGQTITLEVEPSDTIENVKAKIQ 942
            R +    ++++  L L L+ RGG      +QIFVKTL G+TITLEVEPSDTI+NVKAKIQ
Sbjct: 50   RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 943  DKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLKVAAISPVL 1092
            DKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+   I P L
Sbjct: 109  DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSL 159


>ref|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  151 bits (382), Expect = 8e-37
 Identities = 79/96 (82%), Positives = 85/96 (88%)
 Frame = +1

Query: 337 RGDSV*LASQRLCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 516
           R D + L+ QR    +   +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQ
Sbjct: 59  RKDRLSLSLQRGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQ 118

Query: 517 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 624
           RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 119 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  150 bits (380), Expect = 1e-36
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +1

Query: 553 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 714
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 715 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 852
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  100 bits (248), Expect = 3e-21
 Identities = 62/111 (55%), Positives = 74/111 (66%), Gaps = 7/111 (6%)
 Frame = +1

Query: 781  RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLDGQTITLEVEPSDTIENVKAKIQ 942
            R +    ++++  L L L+ RGG      +QIFVKTL G+TITLEVEPSDTI+NVKAKIQ
Sbjct: 50   RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 943  DKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLKVAAISPVL 1092
            DKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+   I P L
Sbjct: 109  DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSL 159


>ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus].
          Length = 128

 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 8e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 2e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 155

 Score =  149 bits (376), Expect = 4e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGMQIFVKTLT 648
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 54/77 (70%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 156

 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  148 bits (374), Expect = 6e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 95.1 bits (235), Expect = 8e-20
 Identities = 54/77 (70%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 239

 Score =  108 bits (270), Expect = 7e-24
 Identities = 56/81 (69%), Positives = 65/81 (80%)
 Frame = +1

Query: 382 SQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 561
           +   +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TL
Sbjct: 110 ADTNVQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTL 169

Query: 562 SDYNIQKESTLHLVLRLRGGM 624
           S+  IQ +STL+L L L  G+
Sbjct: 170 SNCYIQNQSTLYLELPLCDGI 190



 Score =  108 bits (269), Expect = 1e-23
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 802 IQKESTLHLVLRLRGGM 852
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 46/83 (55%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMAALFLITH 1029
            +QIF+KTL   TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F G   +        +
Sbjct: 114  VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 1030 -PERVTLHLVLRLKVAAISPVLH 1095
               + TL+L L L    I P LH
Sbjct: 174  IQNQSTLYLELPLCDGIIEPSLH 196


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,556,527
Number of extensions: 1010213
Number of successful extensions: 3014
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2961
Number of HSP's successfully gapped: 84
Length of query: 365
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 262
Effective length of database: 12,523,851
Effective search space: 3281248962
Effective search space used: 3281248962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000882
         (1097 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [S...   391   e-109
Alignment   gi|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [S...   391   e-109
Alignment   gi|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [S...   391   e-109
Alignment   gi|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [S...   391   e-109
Alignment   gi|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [S...   391   e-109
Alignment   gi|NP_001098779.1| ubiquitin [Sus scrofa].                           390   e-109
Alignment   gi|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098...   325   2e-89
Alignment   gi|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].    151   5e-37
Alignment   gi|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   7e-37
Alignment   gi|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   7e-37

>ref|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [Sus scrofa].
          Length = 305

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  387 bits (995), Expect = e-108
 Identities = 204/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 4e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [Sus scrofa].
          Length = 305

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  387 bits (995), Expect = e-108
 Identities = 204/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 4e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [Sus scrofa].
          Length = 305

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  387 bits (995), Expect = e-108
 Identities = 204/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 4e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [Sus scrofa].
          Length = 305

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  387 bits (995), Expect = e-108
 Identities = 204/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 4e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [Sus scrofa].
          Length = 305

 Score =  391 bits (1004), Expect = e-109
 Identities = 208/234 (88%), Positives = 213/234 (91%), Gaps = 1/234 (0%)
 Frame = +1

Query: 370  LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
            L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69   LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
            GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPS 909
            PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPS
Sbjct: 189  PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPS 248

Query: 910  DTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            DTIENVKAKIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 249  DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302



 Score =  387 bits (995), Expect = e-108
 Identities = 204/226 (90%), Positives = 209/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 4e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 145 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 204

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 205 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 264

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|NP_001098779.1| ubiquitin [Sus scrofa].
          Length = 229

 Score =  390 bits (1003), Expect = e-109
 Identities = 206/226 (91%), Positives = 210/226 (92%), Gaps = 1/226 (0%)
 Frame = +1

Query: 394  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
            MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 753
            IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61   IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 754  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLDGQTITLEVEPSDTIENVKA 933
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL G+TITLEVEPSDTIENVKA
Sbjct: 121  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 934  KIQDKEGIPPDQQRLIFAGSSWKMA-ALFLITHPERVTLHLVLRLK 1068
            KIQDKEGIPPDQQRLIFAG   +    L      +  TLHLVLRL+
Sbjct: 181  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 226



 Score =  298 bits (763), Expect = 4e-81
 Identities = 154/160 (96%), Positives = 155/160 (96%)
 Frame = +1

Query: 370 LCLHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 549
           L L  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 69  LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 128

Query: 550 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 729
           GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI
Sbjct: 129 GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 188

Query: 730 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 849
           PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098 [Sus scrofa].
          Length = 252

 Score =  325 bits (834), Expect = 2e-89
 Identities = 176/228 (77%), Positives = 178/228 (78%), Gaps = 1/228 (0%)
 Frame = -3

Query: 1065 QTEDQMESDSFW-MCNQKECGHLPAAACKDEPLLVRGNAFXXXXXXXXXXXGVTGLHLQG 889
            QTEDQMES  F  +  +K        ACKDEPLLVRGNAF           GVTGLHLQG
Sbjct: 25   QTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFLILDLGLHILDGVTGLHLQG 84

Query: 888  DGLPVQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXX 709
            DGL  QGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAF    
Sbjct: 85   DGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFLILD 144

Query: 708  XXXXXXXGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC 529
                   GVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC
Sbjct: 145  LGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLAC 204

Query: 528  KDEPLLVGGNAXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLHFDL 385
            KDEPLLVGGNA            GVTGLHLQGDGLAGQGLHEDLHFDL
Sbjct: 205  KDEPLLVGGNALLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHFDL 252



 Score =  236 bits (602), Expect = 2e-62
 Identities = 124/155 (80%), Positives = 127/155 (81%)
 Frame = -3

Query: 858 DLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFXXXXXXXXXXXGVT 679
           +L  TPQT++QMESGLFLDVVIRKSAAIFQLLACKDEPLLV GNAF           GVT
Sbjct: 19  ELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFLILDLGLHILDGVT 78

Query: 678 GLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKSAAILQLLACKDEPLLVGGN 499
           GLHLQGDGLAGQGLHEDLHTTPQTQNQME GLFLDVVIRKSAAI QLLACKDEPLLVGGN
Sbjct: 79  GLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGN 138

Query: 498 AXXXXXXXXXXXXGVTGLHLQGDGLAGQGLHEDLH 394
           A            GVTGLHLQGDGLAGQGLHEDLH
Sbjct: 139 AFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLH 173


>ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].
          Length = 128

 Score =  151 bits (382), Expect = 5e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGGM 624
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  151 bits (382), Expect = 5e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGGM 852
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  100 bits (250), Expect = 1e-21
 Identities = 57/82 (69%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAAISPVL 1092
              +  TLHLVLRL+   I P L
Sbjct: 61   IQKESTLHLVLRLRGGIIEPSL 82


>ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 9e-21
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


>ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 394 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 573
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 574 IQKESTLHLVLRLRGG 621
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 622 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 801
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 802 IQKESTLHLVLRLRGG 849
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score = 97.8 bits (242), Expect = 9e-21
 Identities = 55/77 (71%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
 Frame = +1

Query: 850  MQIFVKTLDGQTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGSSWKMA-ALFLIT 1026
            MQIFVKTL G+TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG   +    L    
Sbjct: 1    MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 1027 HPERVTLHLVLRLKVAA 1077
              +  TLHLVLRL+  A
Sbjct: 61   IQKESTLHLVLRLRGGA 77


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,220,241
Number of extensions: 768403
Number of successful extensions: 2469
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2393
Number of HSP's successfully gapped: 66
Length of query: 365
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,854,232
Effective search space: 2346371480
Effective search space used: 2346371480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000882
         (1097 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr12                                                        1308   0.0  
Sscrofa_Chr14                                                         648   0.0  
Sscrofa_Chr10                                                         331   5e-88
Sscrofa_Chr15                                                         190   1e-45
Sscrofa_Chr02                                                         127   1e-26
Sscrofa_Chr08                                                         111   8e-22
Sscrofa_Chr01                                                         100   3e-18
gb|GL894030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    76   5e-11
Sscrofa_Chr03                                                          60   3e-06

>Sscrofa_Chr12 
||          Length = 63588571

 Score = 1308 bits (660), Expect = 0.0
 Identities = 706/716 (98%), Gaps = 4/716 (0%)
 Strand = Plus / Minus

                                                                            
Query: 386      aggtcaaaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtgg 445
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298822 aggtcaaaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtgg 62298763

                                                                            
Query: 446      agcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattcccc 505
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298762 agcccagtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattcccc 62298703

                                                                            
Query: 506      ccgaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctg 565
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298702 ccgaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctg 62298643

                                                                            
Query: 566      attacaacatccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgc 625
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298642 attacaacatccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgc 62298583

                                                                            
Query: 626      agatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgaca 685
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298582 agatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgaca 62298523

                                                                            
Query: 686      ccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcaga 745
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298522 ccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcaga 62298463

                                                                            
Query: 746      ggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatcc 805
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298462 ggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatcc 62298403

                                                                            
Query: 806      agaaagagtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtga 865
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298402 agaaagagtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtga 62298343

                                                                            
Query: 866      agaccttggacgggcagaccatcaccctggaggtggagcccagtgacaccatcgagaatg 925
                ||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298342 agaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatg 62298283

                                                                            
Query: 926      tgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg 985
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62298282 tgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg 62298223

                                                                            
Query: 986      caggc-agcagctggaagatggccgcactctttctgattac-acatccagaaagagt-ca 1042
                ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 62298222 caggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagagtcca 62298163

                                                                        
Query: 1043     ctctccatctggtcctccgtctga-aggtggctgctatttctccagtcttgcattc 1097
                ||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 62298162 ctctccatctggtcctccgtctgaggggtggctgctaattctccagtcttgcattc 62298107



 Score =  771 bits (389), Expect = 0.0
 Identities = 389/389 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        ggaagtttccagagctttcgaggaagatccccttaactcgaattcatccgcctgatcatt 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299868 ggaagtttccagagctttcgaggaagatccccttaactcgaattcatccgcctgatcatt 62299809

                                                                            
Query: 61       tccctaccttttcctaaaggaggagcagaacaacctggaagagaggagagctgaattttt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299808 tccctaccttttcctaaaggaggagcagaacaacctggaagagaggagagctgaattttt 62299749

                                                                            
Query: 121      taggatcctttcttccggtttgaggaattcagggctccgctgaggggcctcgctgcgtcg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299748 taggatcctttcttccggtttgaggaattcagggctccgctgaggggcctcgctgcgtcg 62299689

                                                                            
Query: 181      cggaggtgaggccgagggaactactttcagcagcgcacggatacggcgcctacgcaagcg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299688 cggaggtgaggccgagggaactactttcagcagcgcacggatacggcgcctacgcaagcg 62299629

                                                                            
Query: 241      tgatgagtgacgcaacagacgttgcataaatttcggccccgccgagccgcagcgttcaga 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299628 tgatgagtgacgcaacagacgttgcataaatttcggccccgccgagccgcagcgttcaga 62299569

                                                                            
Query: 301      agcgactggcattgttggcggtttcgctgttgcggtcgaggtgattcggtgtgattggct 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62299568 agcgactggcattgttggcggtttcgctgttgcggtcgaggtgattcggtgtgattggct 62299509

                                             
Query: 361      tcacagcgtctgtgccttcactcacaggt 389
                |||||||||||||||||||||||||||||
Sbjct: 62299508 tcacagcgtctgtgccttcactcacaggt 62299480


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  648 bits (327), Expect = 0.0
 Identities = 588/671 (87%), Gaps = 3/671 (0%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960091 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960150

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960151 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960210

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960211 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960270

                                                                            
Query: 574      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 633
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960271 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960330

                                                                            
Query: 634      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 693
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29960331 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960390

                                                                            
Query: 694      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 753
                || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29960391 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960450

                                                                            
Query: 754      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 813
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960451 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960510

                                                                            
Query: 814      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 873
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960511 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960570

                                                                            
Query: 874      gacgggcagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 933
                   ||  |||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 29960571 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960630

                                                                            
Query: 934      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg-caggcag 992
                ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| | || ||
Sbjct: 29960631 aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960690

                                                                            
Query: 993      cagctggaagatggccgcactctttctgattac-acatccagaaagagt-cactctccat 1050
                |||||||||||||| ||||| || ||||| ||| |||||||||| |||| ||| || || 
Sbjct: 29960691 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960750

                           
Query: 1051     ctggtcctccg 1061
                |||||||||||
Sbjct: 29960751 ctggtcctccg 29960761



 Score =  640 bits (323), Expect = 0.0
 Identities = 587/671 (87%), Gaps = 3/671 (0%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960319 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960378

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960379 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960438

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960439 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960498

                                                                            
Query: 574      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 633
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960499 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960558

                                                                            
Query: 634      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 693
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29960559 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960618

                                                                            
Query: 694      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 753
                || || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29960619 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960678

                                                                            
Query: 754      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 813
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960679 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960738

                                                                            
Query: 814      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 873
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960739 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960798

                                                                            
Query: 874      gacgggcagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 933
                   ||  |||||||||||||||| ||||||||||| |||||||||||||| || ||||| 
Sbjct: 29960799 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960858

                                                                            
Query: 934      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg-caggcag 992
                |||||||| || ||||||||||| ||||| |||||||||||||| ||||||| | || ||
Sbjct: 29960859 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960918

                                                                            
Query: 993      cagctggaagatggccgcactctttctgattac-acatccagaaagagt-cactctccat 1050
                |||||||||||||| ||||| || ||||| ||| |||||||||| |||| ||| || || 
Sbjct: 29960919 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960978

                           
Query: 1051     ctggtcctccg 1061
                |||||||||||
Sbjct: 29960979 ctggtcctccg 29960989



 Score =  640 bits (323), Expect = 0.0
 Identities = 587/671 (87%), Gaps = 3/671 (0%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960547 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960606

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 29960607 gacaccatcgagaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccag 29960666

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960667 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960726

                                                                            
Query: 574      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 633
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960727 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960786

                                                                            
Query: 634      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 693
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29960787 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960846

                                                                            
Query: 694      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 753
                || || ||||| |||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29960847 aacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29960906

                                                                            
Query: 754      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 813
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29960907 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960966

                                                                            
Query: 814      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 873
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29960967 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961026

                                                                            
Query: 874      gacgggcagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 933
                   ||  |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 29961027 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961086

                                                                            
Query: 934      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg-caggcag 992
                |||||||| || ||||||||||| ||||| |||||||||||||| ||||||| | || ||
Sbjct: 29961087 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961146

                                                                            
Query: 993      cagctggaagatggccgcactctttctgattac-acatccagaaagagt-cactctccat 1050
                |||||||||||||| ||||| || ||||| ||| |||||||||| |||| ||| || || 
Sbjct: 29961147 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29961206

                           
Query: 1051     ctggtcctccg 1061
                |||||||||||
Sbjct: 29961207 ctggtcctccg 29961217



 Score =  638 bits (322), Expect = e-180
 Identities = 570/650 (87%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29960775 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29960834

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                |||||||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29960835 gacaccatcgagaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29960894

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29960895 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960954

                                                                            
Query: 574      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 633
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29960955 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29961014

                                                                            
Query: 634      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 693
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29961015 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29961074

                                                                            
Query: 694      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 753
                ||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29961075 aatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29961134

                                                                            
Query: 754      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 813
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29961135 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29961194

                                                                            
Query: 814      tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 873
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 29961195 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29961254

                                                                            
Query: 874      gacgggcagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 933
                   ||  |||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 29961255 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 29961314

                                                                            
Query: 934      aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg-caggcag 992
                |||||||| || ||||||||||| ||||| |||||||||||||| ||||||| | || ||
Sbjct: 29961315 aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29961374

                                                                  
Query: 993      cagctggaagatggccgcactctttctgattac-acatccagaaagagtc 1041
                |||||||||||||| ||||| || ||||| ||| |||||||||| |||||
Sbjct: 29961375 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtc 29961424



 Score =  618 bits (312), Expect = e-174
 Identities = 585/672 (87%), Gaps = 3/672 (0%)
 Strand = Plus / Plus

                                                                            
Query: 393      aatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccag 452
                |||||||||||| || |||||| |||| || ||||||||||||||||| |||||||||||
Sbjct: 29959862 aatgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccag 29959921

                                                                            
Query: 453      tgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacca 512
                ||||||||| |||||||| ||||  ||||| || || || |||||||| ||||| |||||
Sbjct: 29959922 tgacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagacca 29959981

                                                                            
Query: 513      gcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaa 572
                ||||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||
Sbjct: 29959982 gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 29960041

                                                                            
Query: 573      catccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatctt 632
                ||||||||| ||||||||||| || ||||| || || || || ||||| |||||||||||
Sbjct: 29960042 catccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatctt 29960101

                                                                            
Query: 633      cgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcga 692
                ||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 29960102 cgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcga 29960161

                                                                            
Query: 693      gaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcat 752
                ||| || ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct: 29960162 gaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgat 29960221

                                                                            
Query: 753      ctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaaga 812
                |||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| ||
Sbjct: 29960222 ctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagga 29960281

                                                                            
Query: 813      gtccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagacctt 872
                |||||| || || ||||| || || || || ||||| |||||||||||||||||||||||
Sbjct: 29960282 gtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacctt 29960341

                                                                            
Query: 873      ggacgggcagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggc 932
                |   ||  |||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct: 29960342 gactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggc 29960401

                                                                            
Query: 933      caagatccaggataaggaaggcattccccctgaccagcagaggctcatctttg-caggca 991
                 ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| | || |
Sbjct: 29960402 gaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaa 29960461

                                                                            
Query: 992      gcagctggaagatggccgcactctttctgattac-acatccagaaagagt-cactctcca 1049
                ||||||||||||||| ||||| || ||||| ||| |||||||||| |||| ||| || ||
Sbjct: 29960462 gcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgca 29960521

                            
Query: 1050     tctggtcctccg 1061
                 |||||||||||
Sbjct: 29960522 cctggtcctccg 29960533



 Score =  470 bits (237), Expect = e-130
 Identities = 378/425 (88%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29961003 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29961062

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                ||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29961063 gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29961122

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29961123 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29961182

                                                                            
Query: 574      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 633
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 29961183 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29961242

                                                                            
Query: 634      gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 693
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 29961243 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29961302

                                                                            
Query: 694      aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 753
                ||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct: 29961303 aatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 29961362

                                                                            
Query: 754      tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 813
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 29961363 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29961422

                     
Query: 814      tccac 818
                |||||
Sbjct: 29961423 tccac 29961427



 Score =  230 bits (116), Expect = 1e-57
 Identities = 179/200 (89%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29961231 atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 29961290

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                ||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 29961291 gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 29961350

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 29961351 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29961410

                                    
Query: 574      atccagaaagagtccaccct 593
                |||||||| |||||||||||
Sbjct: 29961411 atccagaaggagtccaccct 29961430



 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 163/200 (81%), Gaps = 1/200 (0%)
 Strand = Plus / Minus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||| ||||||||||| || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 513
                 | ||||  |||||||| || || || |||||||| ||||||||||| |  || ||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 514      cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 573
                ||| | || || ||||   |||| ||||||||||||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                    
Query: 574      atccagaaagagtccaccct 593
                ||||||||||||||||||||
Sbjct: 42239552 atccagaaagagtccaccct 42239533



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 157/197 (79%), Gaps = 1/197 (0%)
 Strand = Plus / Minus

                                                                            
Query: 622      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 681
                ||||||||||| ||||||||| | || ||||||||||||||| | |||||  ||||||| 
Sbjct: 42239731 atgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccagc 42239672

                                                                            
Query: 682      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccgaccag 741
                 | ||||  |||||||| || || || |||||||| ||||| ||||| |  || ||||||
Sbjct: 42239671 aatacca-agagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgaccag 42239613

                                                                            
Query: 742      cagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaac 801
                ||| | || || ||||   |||| |||||||| |||||||  || || || || ||| | 
Sbjct: 42239612 cagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacgat 42239553

                                 
Query: 802      atccagaaagagtccac 818
                |||||||||||||||||
Sbjct: 42239552 atccagaaagagtccac 42239536


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  331 bits (167), Expect = 5e-88
 Identities = 245/273 (89%), Gaps = 16/273 (5%)
 Strand = Plus / Minus

                                                                            
Query: 349      gtgtgattggcttcacagcgtctgtgccttcactcacaggtcaaaatgcagatcttcgtg 408
                |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| |||
Sbjct: 29934467 gtgtgattggattcacagcatctgtgcctttgctcacaggtcaaaatgcagatctttgtg 29934408

                                                                            
Query: 409      aagaccctgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 468
                |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct: 29934407 aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccaccgaga-- 29934350

                                                                            
Query: 469      gtgaaggccaagatccaggataaggagggcatt-ccccccgaccagcagaggctcatctt 527
                             ||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 29934349 -------------tccaggataaggaaggcattgccccccgaccggcagaggctcatctt 29934303

                                                                            
Query: 528      tgcaggcaagcagctggaggatggccgcactctttctgattacaacatccagaaagagtc 587
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934302 tgcaggcaagccgctggaggatggccgcactctttctgattacaacatccagaaagagtc 29934243

                                                 
Query: 588      caccctccatctggttctgcgtctgaggggtgg 620
                ||||||||||||||| || ||||||||||||||
Sbjct: 29934242 caccctccatctggtcctccgtctgaggggtgg 29934210



 Score =  274 bits (138), Expect = 1e-70
 Identities = 204/228 (89%), Gaps = 16/228 (7%)
 Strand = Plus / Minus

                                                                            
Query: 622      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 681
                ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 682      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcatt-ccccccgacca 740
                ||||||| |||||               |||||||||||||||||||| |||||||||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 741      gcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaa 800
                |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                                
Query: 801      catccagaaagagtccactctccatctggttctgcgtctgaggggtgg 848
                |||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccgtctgaggggtgg 29934210



 Score =  204 bits (103), Expect = 7e-50
 Identities = 218/253 (86%), Gaps = 20/253 (7%)
 Strand = Plus / Minus

                                                                            
Query: 850      atgcagatcttcgtgaagaccttggacgggcagaccatcaccctggaggtggagcccagt 909
                ||||||||||| ||||||||||||  |||  |||||||||||||||||||||||||||||
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 910      gacaccatcgagaatgtgaaggccaagatccaggataaggaaggcatt-ccccctgacca 968
                ||||||| |||||               |||||||||||||||||||| ||||| |||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 969      gcagaggctcatctttgcaggca-gcagctggaagatggccgcactctttctgattac-a 1026
                ||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                                            
Query: 1027     catccagaaagagt-cactctccatctggtcctccgtctga-aggtggctgctatttctc 1084
                |||||||||||||| ||| ||||||||||||||||||||||  ||||||||||| | || 
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccgtctgaggggtggctgctaatcctt 29934198

                             
Query: 1085     cagtcttgcattc 1097
                |||||||||||||
Sbjct: 29934197 cagtcttgcattc 29934185


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  190 bits (96), Expect = 1e-45
 Identities = 131/140 (93%), Gaps = 2/140 (1%)
 Strand = Plus / Plus

                                                                            
Query: 637      aagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaat 696
                |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70557861 aagaccttaaccagcaagaccatcaccctggaggtggagcccagtgacaccat-gagaat 70557919

                                                                            
Query: 697      gtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatcttt 756
                ||||||||||||||||||||||||||||||| |||  | ||||||||| |||||||||||
Sbjct: 70557920 gtgaaggccaagatccaggataaggaaggca-tccagctgaccagcagcggctcatcttt 70557978

                                    
Query: 757      gcaggcaagcagctggaaga 776
                |||||||| |||||||||||
Sbjct: 70557979 gcaggcaaacagctggaaga 70557998



 Score =  170 bits (86), Expect = 1e-39
 Identities = 139/154 (90%), Gaps = 2/154 (1%)
 Strand = Plus / Plus

                                                                            
Query: 392      aaatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagccca 451
                ||||||| ||||||   |||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 70557844 aaatgcaaatcttcaccaagaccttaaccagcaagaccatcaccctggaggtggagccca 70557903

                                                                            
Query: 452      gtgacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgacc 511
                |||||||||| |||||||||||||||||||||||||||||||| |||| |||  | ||||
Sbjct: 70557904 gtgacaccat-gagaatgtgaaggccaagatccaggataaggaaggca-tccagctgacc 70557961

                                                  
Query: 512      agcagaggctcatctttgcaggcaagcagctgga 545
                ||||| ||||||||||||||||||| ||||||||
Sbjct: 70557962 agcagcggctcatctttgcaggcaaacagctgga 70557995



 Score =  167 bits (84), Expect = 2e-38
 Identities = 117/124 (94%), Gaps = 3/124 (2%)
 Strand = Plus / Plus

                                                                            
Query: 881      agaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggccaagatcc 940
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 70557877 agaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatcc 70557935

                                                                            
Query: 941      aggataaggaaggcattccccctgaccagcagaggctcatctttgcaggc-agcagctgg 999
                ||||||||||||||| |||  ||||||||||| ||||||||||||||||| | |||||||
Sbjct: 70557936 aggataaggaaggca-tccagctgaccagcagcggctcatctttgcaggcaaacagctgg 70557994

                    
Query: 1000     aaga 1003
                ||||
Sbjct: 70557995 aaga 70557998


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  127 bits (64), Expect = 1e-26
 Identities = 94/104 (90%)
 Strand = Plus / Plus

                                                                            
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 453
                ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                            
Query: 454      gacaccatcgagaatgtgaaggccaagatccaggataaggaggg 497
                || ||||| |||||||| || || || |||||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataaggaggg 59062643



 Score =  113 bits (57), Expect = 2e-22
 Identities = 90/101 (89%)
 Strand = Plus / Plus

                                                                            
Query: 622      atgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 681
                ||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccagt 59062599

                                                         
Query: 682      gacaccatcgagaatgtgaaggccaagatccaggataagga 722
                || ||||| |||||||| || || || ||||||||||||||
Sbjct: 59062600 gataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 90/102 (88%), Gaps = 2/102 (1%)
 Strand = Plus / Plus

                                                                            
Query: 850      atgcagatcttcgtgaagaccttggacgggca-gaccatcaccctggaggtggagcccag 908
                ||||||||||| ||||||||| || ||||||| |||||||||||| ||||| ||||||||
Sbjct: 59062540 atgcagatctttgtgaagaccctg-acgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 909      tgacaccatcgagaatgtgaaggccaagatccaggataagga 950
                ||| ||||| |||||||| || || || ||||||||||||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 71.9 bits (36), Expect = 7e-10
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                            
Query: 508      gaccagcagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgat 567
                ||||||||| | || || ||||| ||||| ||||||||||||||||||||||| || || 
Sbjct: 59062903 gaccagcagcgtctgatttttgctggcaaacagctggaggatggccgcactctctcagac 59062962

                                
Query: 568      tacaacatccagaaag 583
                ||||| ||||||||||
Sbjct: 59062963 tacaatatccagaaag 59062978



 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                            
Query: 723      aggcattccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccg 782
                |||||| || || ||||||||| | || || ||||| ||||| |||||||| ||||||||
Sbjct: 59062890 aggcatcccacctgaccagcagcgtctgatttttgctggcaaacagctggaggatggccg 59062949

                                             
Query: 783      cactctttctgattacaacatccagaaag 811
                |||||| || || ||||| ||||||||||
Sbjct: 59062950 cactctctcagactacaatatccagaaag 59062978


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  111 bits (56), Expect = 8e-22
 Identities = 198/243 (81%), Gaps = 3/243 (1%)
 Strand = Plus / Plus

                                                                            
Query: 574      atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcag-atctt 632
                |||||||||||||| ||| | |  | ||| |||| ||||||||||| ||||||| | |  
Sbjct: 11763196 atccagaaagagtcaaccttgctaccggtcctgcctctgaggggtgatatgcagcacccg 11763255

                                                                            
Query: 633      cgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcga 692
                 ||||||||  ||| | |||||||| ||  |||||||||||||||||||||| ||   ||
Sbjct: 11763256 ggtgaagactctgatcagcaagaccgtcctcctggaggtggagcccagtgaccccgctga 11763315

                                                                            
Query: 693      gaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcat 752
                |||   ||||||| ||||||||||||||||||||||  |||| | ||||||||||||| |
Sbjct: 11763316 gaacccgaaggcccagatccaggataaggaaggcatctcccctggccagcagaggctcgt 11763375

                                                                            
Query: 753      ctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaaga 812
                |||||||||| | ||||  ||||||||||  ||||  ||||||| || ||| ||||||||
Sbjct: 11763376 ctttgcaggccaacagccagaagatggccagactc--tctgattgcagcattcagaaaga 11763433

                   
Query: 813      gtc 815
                |||
Sbjct: 11763434 gtc 11763436



 Score =  103 bits (52), Expect = 2e-19
 Identities = 88/100 (88%)
 Strand = Plus / Plus

                                                                            
Query: 891      cctggaggtggagcccagtgacaccatcgagaatgtgaaggccaagatccaggataagga 950
                |||||||||||||||||||||| ||   |||||   ||||||| ||||||||||||||||
Sbjct: 11763286 cctggaggtggagcccagtgaccccgctgagaacccgaaggcccagatccaggataagga 11763345

                                                        
Query: 951      aggcattccccctgaccagcagaggctcatctttgcaggc 990
                ||||||  |||||| ||||||||||||| |||||||||||
Sbjct: 11763346 aggcatctcccctggccagcagaggctcgtctttgcaggc 11763385



 Score =  101 bits (51), Expect = 8e-19
 Identities = 150/182 (82%), Gaps = 2/182 (1%)
 Strand = Plus / Plus

                                                                            
Query: 406      gtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 465
                |||||||| |||| | |||||||| ||  |||||||||||||||||||||| ||   |||
Sbjct: 11763257 gtgaagactctgatcagcaagaccgtcctcctggaggtggagcccagtgaccccgctgag 11763316

                                                                            
Query: 466      aatgtgaaggccaagatccaggataaggagggcattccccccgaccagcagaggctcatc 525
                ||   ||||||| |||||||||||||||| |||||  |||| | ||||||||||||| ||
Sbjct: 11763317 aacccgaaggcccagatccaggataaggaaggcatctcccctggccagcagaggctcgtc 11763376

                                                                            
Query: 526      tttgcaggcaagcagctggaggatggccgcactctttctgattacaacatccagaaagag 585
                ||||||||| | ||||  || |||||||  ||||  ||||||| || ||| |||||||||
Sbjct: 11763377 tttgcaggccaacagccagaagatggccagactc--tctgattgcagcattcagaaagag 11763434

                  
Query: 586      tc 587
                ||
Sbjct: 11763435 tc 11763436



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 160/199 (80%), Gaps = 2/199 (1%)
 Strand = Plus / Minus

                                                                           
Query: 395     tgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagtg 454
               ||||| |||| |||||||||| | | ||  ||||| ||||||||||||||||||| ||||
Sbjct: 3018032 tgcaggtcttggtgaagaccccgccaggtgagaccctcaccctggaggtggagcctagtg 3017973

                                                                           
Query: 455     acaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccagc 514
               |  |||  |||||||  |  || || ||||||| |||||||||||| || || |||||||
Sbjct: 3017972 atgccactgagaatgccagagctaaaatccaggctaaggagggcatcccgcctgaccagc 3017913

                                                                           
Query: 515     agaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaaca 574
               || | || |  ||||| ||||| ||||||||||||||| | || || || ||  ||| | 
Sbjct: 3017912 agcgtctga-atttgccggcaaacagctggaggatggctg-acgctctcagaccacaccg 3017855

                                  
Query: 575     tccagaaagagtccaccct 593
               |||||||||||||||||||
Sbjct: 3017854 tccagaaagagtccaccct 3017836


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 104/122 (85%)
 Strand = Plus / Plus

                                                                             
Query: 706       aagatccaggataaggaaggcattccccccgaccagcagaggctcatctttgcaggcaag 765
                 |||||||||||||||||||| ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 766       cagctggaagatggccgcactctttctgattacaacatccagaaagagtccactctccat 825
                 || ||||||||||| || ||| | ||||| |||||||| || || ||||||||||| |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 826       ct 827
                 ||
Sbjct: 286958047 ct 286958048



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 101/122 (82%)
 Strand = Plus / Plus

                                                                             
Query: 478       aagatccaggataaggagggcattccccccgaccagcagaggctcatctttgcaggcaag 537
                 ||||||||||||||||| || ||||| || |||||||| || || |||| ||| ||||||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                             
Query: 538       cagctggaggatggccgcactctttctgattacaacatccagaaagagtccaccctccat 597
                 || ||||| ||||| || ||| | ||||| |||||||| || || |||||||| || |||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccactcttcat 286958046

                   
Query: 598       ct 599
                 ||
Sbjct: 286958047 ct 286958048



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 65/74 (87%), Gaps = 1/74 (1%)
 Strand = Plus / Plus

                                                                             
Query: 934       aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggc-ag 992
                 |||||||||||||||||||| ||||| ||||||||||| || || |||| ||| ||| ||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                               
Query: 993       cagctggaagatgg 1006
                 || |||||||||||
Sbjct: 286957987 caactggaagatgg 286958000


>gb|GL894030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2736
          Length = 39926

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 119/146 (81%)
 Strand = Plus / Plus

                                                                         
Query: 634   gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 693
             ||||||||| |||| |||||||||||||| || ||||| || |||   || ||  | || 
Sbjct: 37240 gtgaagaccctgacaggcaagaccatcactctcgaggttgaaccctcagatacattagaa 37299

                                                                         
Query: 694   aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 753
             ||||| ||||| |||||||||||||||  ||| ||||| || |||||||| || || | |
Sbjct: 37300 aatgtaaaggctaagatccaggataagataggaattccgcctgaccagcaaagactgacc 37359

                                       
Query: 754   tttgcaggcaagcagctggaagatgg 779
             ||||| |||||||| |||||||||||
Sbjct: 37360 tttgctggcaagcaactggaagatgg 37385



 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 73/86 (84%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 922   aatgtgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggctcatc 981
             ||||| ||||| |||||||||||||||  ||| ||||| ||||||||||| || || | |
Sbjct: 37300 aatgtaaaggctaagatccaggataagataggaattccgcctgaccagcaaagactgacc 37359

                                       
Query: 982   tttgcaggc-agcagctggaagatgg 1006
             ||||| ||| |||| |||||||||||
Sbjct: 37360 tttgctggcaagcaactggaagatgg 37385


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 394      atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggt 443
                |||||||| ||||||||||| ||||| |||||||||||||| || |||||
Sbjct: 90776264 atgcagatattcgtgaagacgctgacgggcaagaccatcactctcgaggt 90776215


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,314,386
Number of extensions: 236
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 35
Length of query: 1097
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1076
Effective length of database: 2,808,413,156
Effective search space: 3021852555856
Effective search space used: 3021852555856
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)