Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000898
(1131 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026941.2| calcineurin-like phosphoesterase domain-cont... 445 e-125
Alignment gi|XP_002698049.1| PREDICTED: hypothetical protein [Bos taurus]. 196 4e-50
>ref|NP_001026941.2| calcineurin-like phosphoesterase domain-containing protein 1 [Bos
taurus].
Length = 313
Score = 445 bits (1144), Expect = e-125
Identities = 208/238 (87%), Positives = 219/238 (92%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MS EAG VFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAW+TGDCDNGGDE
Sbjct: 1 MSTAEAGGVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWATGDCDNGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 445
W QEIRL EQAVQAINKLNPKPKFFVLCGDL+HAMPG PWRKEQT+DLQRVL+ VD +IP
Sbjct: 61 WEQEIRLAEQAVQAINKLNPKPKFFVLCGDLVHAMPGRPWRKEQTEDLQRVLRTVDSDIP 120
Query: 446 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 625
LV VSGNHDVGN+PTPETIAEFQ+TWGDDYFSFWVGGVLFLVLNSQFL+DASRCPALKQ
Sbjct: 121 LVLVSGNHDVGNVPTPETIAEFQRTWGDDYFSFWVGGVLFLVLNSQFLYDASRCPALKQE 180
Query: 626 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAG 799
D WLDQQL A +RACRHA+VFQHIPLFLQSI E+DDYFNLT SVRKEMADKF AG
Sbjct: 181 HDHWLDQQLRTAGQRACRHAVVFQHIPLFLQSIGEDDDYFNLTKSVRKEMADKFVEAG 238
>ref|XP_002698049.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 110
Score = 196 bits (497), Expect = 4e-50
Identities = 90/97 (92%), Positives = 92/97 (94%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MS EAG VFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAW+TGDCDNGGDE
Sbjct: 1 MSTAEAGGVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWATGDCDNGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 376
W QEIRL EQAVQAINKLNPKPKFFVLCGDL+HAMPG
Sbjct: 61 WEQEIRLAEQAVQAINKLNPKPKFFVLCGDLVHAMPG 97
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,780,225
Number of extensions: 1282040
Number of successful extensions: 4402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4393
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,240,222
Effective search space: 3887580606
Effective search space used: 3887580606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000898
(1131 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536969.2| PREDICTED: hypothetical protein XP_536969 [Cani... 551 e-157
>ref|XP_536969.2| PREDICTED: hypothetical protein XP_536969 [Canis familiaris].
Length = 313
Score = 551 bits (1419), Expect = e-157
Identities = 266/313 (84%), Positives = 282/313 (90%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MSA EAG VF RARGRTLDAF SEKEREWKGPFYFIQGADPQFGLMKAWSTGD D+GGDE
Sbjct: 1 MSAAEAGGVFRRARGRTLDAFPSEKEREWKGPFYFIQGADPQFGLMKAWSTGDSDSGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 445
WGQEIRLTEQAVQAINKL PKP+FFVLCGDLIHAMPG PWRKEQT DLQRVL VD +IP
Sbjct: 61 WGQEIRLTEQAVQAINKLKPKPRFFVLCGDLIHAMPGMPWRKEQTADLQRVLTQVDSDIP 120
Query: 446 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 625
LV VSGNHDVGN PTPET+AEFQQTWGDDYFSFWVGGVL LVLNSQF +DASRCPALKQA
Sbjct: 121 LVLVSGNHDVGNTPTPETVAEFQQTWGDDYFSFWVGGVLCLVLNSQFWYDASRCPALKQA 180
Query: 626 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVK 805
QDQWLDQQLS+ + C+HAIVFQHIPLFL+SIDE+DDYFNLT SVRKE+A+K A AGV
Sbjct: 181 QDQWLDQQLSIVGQHKCQHAIVFQHIPLFLRSIDEDDDYFNLTKSVRKEIANKLAGAGVT 240
Query: 806 AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLNELSEK 985
AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLG+D+HGLRVVVVTA+ IVHRYYSL+ELSEK
Sbjct: 241 AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGQDTHGLRVVVVTAKKIVHRYYSLDELSEK 300
Query: 986 GIXXXXXXXMKEK 1024
GI MKEK
Sbjct: 301 GIEDDLMGLMKEK 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,830,626
Number of extensions: 1330773
Number of successful extensions: 4746
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4736
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 273
Effective length of database: 15,407,560
Effective search space: 4206263880
Effective search space used: 4206263880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000898
(1131 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060810.2| calcineurin-like phosphoesterase domain-contain... 531 e-151
Alignment gi|NP_001092925.1| calcineurin-like phosphoesterase domain-cont... 188 9e-48
>ref|NP_060810.2| calcineurin-like phosphoesterase domain-containing protein 1 isoform
a [Homo sapiens].
Length = 314
Score = 531 bits (1369), Expect = e-151
Identities = 256/314 (81%), Positives = 279/314 (88%), Gaps = 1/314 (0%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MSA EAG VFHRARGRTL AF +EKE EWKGPFYFI GADPQFGL+KAWSTGDCDNGGDE
Sbjct: 1 MSAAEAGGVFHRARGRTLAAFPAEKESEWKGPFYFILGADPQFGLIKAWSTGDCDNGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 445
W QEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG PWR EQT+DL+RVL+AVD IP
Sbjct: 61 WEQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGKPWRTEQTEDLKRVLRAVDRAIP 120
Query: 446 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 625
LV VSGNHD+GN PT ET+ EF +TWGDDYFSFWVGGVLFLVLNSQF + S+CP+LKQA
Sbjct: 121 LVLVSGNHDIGNTPTAETVEEFCRTWGDDYFSFWVGGVLFLVLNSQFYENPSKCPSLKQA 180
Query: 626 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDD-YFNLTTSVRKEMADKFARAGV 802
QDQWLD+QLS+AR+R C+HAIVFQHIPLFL+SIDE+DD YFNL+ S RK++ADKF AGV
Sbjct: 181 QDQWLDEQLSIARQRHCQHAIVFQHIPLFLESIDEDDDYYFNLSKSTRKKLADKFIHAGV 240
Query: 803 KAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLNELSE 982
K VFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRD HGLRVVVVTAE IVHRYYSL+ELSE
Sbjct: 241 KVVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDPHGLRVVVVTAEKIVHRYYSLDELSE 300
Query: 983 KGIXXXXXXXMKEK 1024
KGI +K+K
Sbjct: 301 KGIEDDLMDLIKKK 314
>ref|NP_001092925.1| calcineurin-like phosphoesterase domain-containing protein 1
isoform b [Homo sapiens].
Length = 172
Score = 188 bits (477), Expect = 9e-48
Identities = 88/97 (90%), Positives = 90/97 (92%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MSA EAG VFHRARGRTL AF +EKE EWKGPFYFI GADPQFGL+KAWSTGDCDNGGDE
Sbjct: 1 MSAAEAGGVFHRARGRTLAAFPAEKESEWKGPFYFILGADPQFGLIKAWSTGDCDNGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 376
W QEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG
Sbjct: 61 WEQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 97
Score = 129 bits (324), Expect = 5e-30
Identities = 64/79 (81%), Positives = 67/79 (84%)
Frame = +2
Query: 788 ARAGVKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSL 967
A GVK VFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRD HGLRVVVVTAE IVHRYYSL
Sbjct: 94 AMPGVKVVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDPHGLRVVVVTAEKIVHRYYSL 153
Query: 968 NELSEKGIXXXXXXXMKEK 1024
+ELSEKGI +K+K
Sbjct: 154 DELSEKGIEDDLMDLIKKK 172
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,853,306
Number of extensions: 1304122
Number of successful extensions: 4483
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4462
Number of HSP's successfully gapped: 3
Length of query: 377
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 273
Effective length of database: 14,868,908
Effective search space: 4059211884
Effective search space used: 4059211884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000898
(1131 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666179.2| calcineurin-like phosphoesterase domain-contain... 552 e-157
>ref|NP_666179.2| calcineurin-like phosphoesterase domain-containing protein 1 [Mus
musculus].
Length = 312
Score = 552 bits (1423), Expect = e-157
Identities = 258/312 (82%), Positives = 286/312 (91%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MSA EA DVFHRARGRTLDAFSSEKEREWKGPFYF+QGAD QFGLMKAWSTG+CD GGDE
Sbjct: 1 MSAMEAADVFHRARGRTLDAFSSEKEREWKGPFYFVQGADTQFGLMKAWSTGNCDAGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 445
WGQEIRLTEQAV+AINKLNPKPKFFVLCGDL+HAMPGTPWR+EQT+DLQRVLKAVD +IP
Sbjct: 61 WGQEIRLTEQAVEAINKLNPKPKFFVLCGDLVHAMPGTPWRQEQTRDLQRVLKAVDQDIP 120
Query: 446 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 625
LV VSGNHD+GN PT ET+ EF QTWGDDYFSFWVGGVLFLVLNSQFL+DASRCPALKQA
Sbjct: 121 LVMVSGNHDLGNAPTAETVEEFCQTWGDDYFSFWVGGVLFLVLNSQFLYDASRCPALKQA 180
Query: 626 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVK 805
QD WLDQQL++A ++ C+HAIVFQHIPLFLQSIDE+DDYFNLT +VRKE+A+K RAG++
Sbjct: 181 QDHWLDQQLNIAEQKQCQHAIVFQHIPLFLQSIDEDDDYFNLTKTVRKELAEKLTRAGIR 240
Query: 806 AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLNELSEK 985
AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLG+D+HGLRVV +TAE IVHRYYSL+ELS+
Sbjct: 241 AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGKDTHGLRVVAITAEKIVHRYYSLDELSQG 300
Query: 986 GIXXXXXXXMKE 1021
G+ +KE
Sbjct: 301 GVEEDLKELLKE 312
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,813,708
Number of extensions: 1081990
Number of successful extensions: 3650
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3638
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 274
Effective length of database: 12,523,851
Effective search space: 3431535174
Effective search space used: 3431535174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000898
(1131 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230510.1| calcineurin-like phosphoesterase domain cont... 627 e-180
Alignment gi|XP_003124623.2| PREDICTED: calcineurin-like phosphoesterase ... 404 e-113
Alignment gi|XP_003354640.1| PREDICTED: calcineurin-like phosphoesterase ... 209 3e-54
Alignment gi|XP_003354642.1| PREDICTED: calcineurin-like phosphoesterase ... 135 5e-32
>ref|NP_001230510.1| calcineurin-like phosphoesterase domain containing 1 [Sus scrofa].
Length = 313
Score = 627 bits (1618), Expect = e-180
Identities = 305/313 (97%), Positives = 306/313 (97%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE
Sbjct: 1 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 445
WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP
Sbjct: 61 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQTKDLQRVLKAVDGEIP 120
Query: 446 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 625
LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA
Sbjct: 121 LVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNSQFLFDASRCPALKQA 180
Query: 626 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVK 805
QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVK
Sbjct: 181 QDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTSVRKEMADKFARAGVK 240
Query: 806 AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLNELSEK 985
AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSL+ELSEK
Sbjct: 241 AVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLDELSEK 300
Query: 986 GIXXXXXXXMKEK 1024
GI MKEK
Sbjct: 301 GIDDDLLDLMKEK 313
>ref|XP_003124623.2| PREDICTED: calcineurin-like phosphoesterase domain-containing
protein 1-like [Sus scrofa].
Length = 247
Score = 404 bits (1038), Expect = e-113
Identities = 193/193 (100%), Positives = 193/193 (100%)
Frame = +2
Query: 221 MKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQT 400
MKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQT
Sbjct: 1 MKAWSTGDCDNGGDEWGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPGTPWRKEQT 60
Query: 401 KDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNS 580
KDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNS
Sbjct: 61 KDLQRVLKAVDGEIPLVFVSGNHDVGNIPTPETIAEFQQTWGDDYFSFWVGGVLFLVLNS 120
Query: 581 QFLFDASRCPALKQAQDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTS 760
QFLFDASRCPALKQAQDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTS
Sbjct: 121 QFLFDASRCPALKQAQDQWLDQQLSVARRRACRHAIVFQHIPLFLQSIDEEDDYFNLTTS 180
Query: 761 VRKEMADKFARAG 799
VRKEMADKFARAG
Sbjct: 181 VRKEMADKFARAG 193
>ref|XP_003354640.1| PREDICTED: calcineurin-like phosphoesterase domain-containing
protein 1-like, partial [Sus scrofa].
Length = 100
Score = 209 bits (531), Expect = 3e-54
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +2
Query: 86 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 265
MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE
Sbjct: 1 MSAEEAGDVFHRARGRTLDAFSSEKEREWKGPFYFIQGADPQFGLMKAWSTGDCDNGGDE 60
Query: 266 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 376
WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG
Sbjct: 61 WGQEIRLTEQAVQAINKLNPKPKFFVLCGDLIHAMPG 97
>ref|XP_003354642.1| PREDICTED: calcineurin-like phosphoesterase domain-containing protein
1-like [Sus scrofa].
Length = 113
Score = 135 bits (339), Expect = 5e-32
Identities = 67/75 (89%), Positives = 68/75 (90%)
Frame = +2
Query: 800 VKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLNELS 979
VKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSL+ELS
Sbjct: 39 VKAVFSGHYHRNAGGTYQNLDMVVSSAIGCQLGRDSHGLRVVVVTAENIVHRYYSLDELS 98
Query: 980 EKGIXXXXXXXMKEK 1024
EKGI MKEK
Sbjct: 99 EKGIDDDLLDLMKEK 113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,277,373
Number of extensions: 827205
Number of successful extensions: 2877
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2864
Number of HSP's successfully gapped: 4
Length of query: 377
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 276
Effective length of database: 8,829,335
Effective search space: 2436896460
Effective search space used: 2436896460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000898
(1131 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 848 0.0
gb|JH118548.1| Sus scrofa unplaced genomic scaffold ChrUScaf947 539 e-150
>Sscrofa_Chr03
|| Length = 144787322
Score = 848 bits (428), Expect = 0.0
Identities = 428/428 (100%)
Strand = Plus / Plus
Query: 371 ccaggaacgccctggcggaaggagcagacgaaggacctgcagcgcgtgctcaaggcggtg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513742 ccaggaacgccctggcggaaggagcagacgaaggacctgcagcgcgtgctcaaggcggtg 29513801
Query: 431 gatggcgagatcccgctggtcttcgtcagtggcaaccacgacgtgggcaacatccccacc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513802 gatggcgagatcccgctggtcttcgtcagtggcaaccacgacgtgggcaacatccccacc 29513861
Query: 491 cccgagaccatcgcggagttccagcagacgtggggggacgactatttcagcttctgggtg 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513862 cccgagaccatcgcggagttccagcagacgtggggggacgactatttcagcttctgggtg 29513921
Query: 551 gggggcgtcctgttcctcgtgctcaactcccagttcctgttcgacgcctccaggtgcccc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513922 gggggcgtcctgttcctcgtgctcaactcccagttcctgttcgacgcctccaggtgcccc 29513981
Query: 611 gccctgaagcaggcccaggaccagtggctggaccagcagctgagcgtcgcccgccggcgc 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29513982 gccctgaagcaggcccaggaccagtggctggaccagcagctgagcgtcgcccgccggcgc 29514041
Query: 671 gcgtgccggcacgccatcgtcttccagcacatcccgctcttcctgcagagcatcgatgag 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29514042 gcgtgccggcacgccatcgtcttccagcacatcccgctcttcctgcagagcatcgatgag 29514101
Query: 731 gaggacgactacttcaacctcaccacgtccgtgcggaaggagatggcagacaagttcgcc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29514102 gaggacgactacttcaacctcaccacgtccgtgcggaaggagatggcagacaagttcgcc 29514161
Query: 791 agagcagg 798
||||||||
Sbjct: 29514162 agagcagg 29514169
Score = 539 bits (272), Expect = e-150
Identities = 317/327 (96%), Gaps = 4/327 (1%)
Strand = Plus / Plus
Query: 794 gcaggggtcaaagccgtgttctcaggccactaccataggaatgctgggggcacttaccag 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29554026 gcaggggtcaaagccgtgttctcaggccactaccataggaatgctgggggcacttaccag 29554085
Query: 854 aacctcgacatggtggtgtcatcagccatcggatgccaactgggcagagatagccacggg 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29554086 aacctcgacatggtggtgtcatcagccatcggatgccaactgggcagagatagccacggg 29554145
Query: 914 ctccgcgtcgtggtggtcactgccgaaaacatcgtccaccgatactacagtttaaatgag 973
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 29554146 ctccgcgtcgtggtggtcactgccgagaacatcgtccaccgatactacagtttagatgag 29554205
Query: 974 ctgagtgagaagggaatagatgacgatctgctggatttgatgaaggagaagtgattgccc 1033
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29554206 ctgagtgagaagggaatagatgacgatctgctggatttgatgaaggagaagtgattgccg 29554265
Query: 1034 gatatgacttgctcacgtttcccttctgctgntcatttcaga-acagcagctgcacac-a 1091
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct: 29554266 attatgacttgctcacgtttcccttctgctgttcatttcagatacagcagctgcacacaa 29554325
Query: 1092 cccctta-tgaaat-aagtgtaccagg 1116
||||||| |||||| ||||||||||||
Sbjct: 29554326 ccccttattgaaataaagtgtaccagg 29554352
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Plus
Query: 154 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456797 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 29456856
Query: 214 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456857 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 29456916
Query: 274 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456917 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 29456976
Query: 334 attctttgttctgtgtggggacctcatccacgccatgccagg 375
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29456977 attctttgttctgtgtggggacctcatccacgccatgccagg 29457018
Score = 307 bits (155), Expect = 7e-81
Identities = 155/155 (100%)
Strand = Plus / Plus
Query: 1 ggccccacccggcggttgaagtgtgaggcgttacgttgctccctcccacgcagtgcactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432710 ggccccacccggcggttgaagtgtgaggcgttacgttgctccctcccacgcagtgcactc 29432769
Query: 61 agtcaaggccagaaactcgctcgccatgtccgctgaggaggcgggggatgttttccatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29432770 agtcaaggccagaaactcgctcgccatgtccgctgaggaggcgggggatgttttccatag 29432829
Query: 121 agcccgtggcagaactctggacgcgttttcctcag 155
|||||||||||||||||||||||||||||||||||
Sbjct: 29432830 agcccgtggcagaactctggacgcgttttcctcag 29432864
>gb|JH118548.1| Sus scrofa unplaced genomic scaffold ChrUScaf947
Length = 111892
Score = 539 bits (272), Expect = e-150
Identities = 317/327 (96%), Gaps = 4/327 (1%)
Strand = Plus / Minus
Query: 794 gcaggggtcaaagccgtgttctcaggccactaccataggaatgctgggggcacttaccag 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17849 gcaggggtcaaagccgtgttctcaggccactaccataggaatgctgggggcacttaccag 17790
Query: 854 aacctcgacatggtggtgtcatcagccatcggatgccaactgggcagagatagccacggg 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17789 aacctcgacatggtggtgtcatcagccatcggatgccaactgggcagagatagccacggg 17730
Query: 914 ctccgcgtcgtggtggtcactgccgaaaacatcgtccaccgatactacagtttaaatgag 973
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 17729 ctccgcgtcgtggtggtcactgccgagaacatcgtccaccgatactacagtttagatgag 17670
Query: 974 ctgagtgagaagggaatagatgacgatctgctggatttgatgaaggagaagtgattgccc 1033
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17669 ctgagtgagaagggaatagatgacgatctgctggatttgatgaaggagaagtgattgccg 17610
Query: 1034 gatatgacttgctcacgtttcccttctgctgntcatttcaga-acagcagctgcacac-a 1091
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct: 17609 attatgacttgctcacgtttcccttctgctgttcatttcagatacagcagctgcacacaa 17550
Query: 1092 cccctta-tgaaat-aagtgtaccagg 1116
||||||| |||||| ||||||||||||
Sbjct: 17549 ccccttattgaaataaagtgtaccagg 17523
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Minus
Query: 154 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98964 agaaaaggaaagggaatggaagggcccattctacttcatccaaggtgcagatccacagtt 98905
Query: 214 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98904 tggactgatgaaggcctggtccaccggggactgtgacaatggtggtgatgagtggggaca 98845
Query: 274 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98844 ggagatccgcctcactgagcaagccgtgcaggccatcaacaagctgaaccccaaacccaa 98785
Query: 334 attctttgttctgtgtggggacctcatccacgccatgccagg 375
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98784 attctttgttctgtgtggggacctcatccacgccatgccagg 98743
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,606,644
Number of extensions: 166
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 6
Length of query: 1131
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1110
Effective length of database: 2,808,413,156
Effective search space: 3117338603160
Effective search space used: 3117338603160
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)