Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000908
(1276 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776804.1| 40S ribosomal protein SA [Bos taurus]. 555 e-158
Alignment gi|XP_002695310.1| PREDICTED: ribosomal protein SA-like [Bos ta... 270 2e-72
>ref|NP_776804.1| 40S ribosomal protein SA [Bos taurus].
Length = 295
Score = 555 bits (1431), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGNFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP+TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPSTEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_002695310.1| PREDICTED: ribosomal protein SA-like [Bos taurus].
Length = 168
Score = 270 bits (690), Expect = 2e-72
Identities = 139/150 (92%), Positives = 142/150 (94%), Gaps = 2/150 (1%)
Frame = +2
Query: 224 YIINLKRTWE--KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT 397
Y +NL + + KLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT
Sbjct: 13 YGMNLDQRFNICKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFT 72
Query: 398 PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 577
PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN
Sbjct: 73 PGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCN 132
Query: 578 NKGAHSVGLMWWMLAREVLRMRGTISREHP 667
NKGAHSVGLMWWMLAREVLRMRGTISR P
Sbjct: 133 NKGAHSVGLMWWMLAREVLRMRGTISRFIP 162
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,817,937
Number of extensions: 1486619
Number of successful extensions: 5894
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5728
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,207,134
Effective search space: 4546282880
Effective search space used: 4546282880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000908
(1276 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860746.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860712.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_534228.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_850029.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_533909.1| PREDICTED: similar to 40S ribosomal protein SA ... 559 e-159
Alignment gi|XP_860584.1| PREDICTED: similar to 40S ribosomal protein SA ... 551 e-157
Alignment gi|XP_860646.1| PREDICTED: similar to 40S ribosomal protein SA ... 549 e-156
Alignment gi|XP_866616.1| PREDICTED: similar to 40S ribosomal protein SA ... 543 e-154
Alignment gi|XP_866603.1| PREDICTED: similar to 40S ribosomal protein SA ... 543 e-154
>ref|XP_860784.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 14 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860746.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 13 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860712.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 12 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_534228.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 1 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_850029.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 2 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_533909.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 1 [Canis familiaris].
Length = 295
Score = 559 bits (1440), Expect = e-159
Identities = 275/295 (93%), Positives = 275/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 295
>ref|XP_860584.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 9 [Canis familiaris].
Length = 276
Score = 551 bits (1419), Expect = e-157
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP +GEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPE-------------------EGEWTAPAPEFTA 221
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTEWS
Sbjct: 222 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEWS 276
>ref|XP_860646.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 11 [Canis familiaris].
Length = 310
Score = 549 bits (1414), Expect = e-156
Identities = 275/310 (88%), Positives = 275/310 (88%), Gaps = 15/310 (4%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPT---------------EDWSAQPTTEDWSAAPTAQAT 940
TQPEVADWSEGVQVPSVPIQQFPT EDWSAQP TEDWSAAPTAQAT
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTGIGLALRVCPLKCVFEDWSAQPATEDWSAAPTAQAT 300
Query: 941 EWVGTTTEWS 970
EWVGTTTEWS
Sbjct: 301 EWVGTTTEWS 310
>ref|XP_866616.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 5 [Canis familiaris].
Length = 295
Score = 543 bits (1400), Expect = e-154
Identities = 270/295 (91%), Positives = 270/295 (91%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL YVDIAIPCNNKG HSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGVHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVL MRGTIS EHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLLMRGTISCEHPWEVMPDLYFYRDPEEIEKEEQATAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTE S
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTECS 295
>ref|XP_866603.1| PREDICTED: similar to 40S ribosomal protein SA (p40) (34/67 kDa
laminin receptor) (Colon carcinoma laminin-binding
protein) (NEM/1CHD4) (Multidrug resistance-associated
protein MGr1-Ag) isoform 4 [Canis familiaris].
Length = 295
Score = 543 bits (1400), Expect = e-154
Identities = 270/295 (91%), Positives = 270/295 (91%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL YVDIAIPCNNKG HSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLCYVDIAIPCNNKGVHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVL MRGTIS EHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLLMRGTISCEHPWEVMPDLYFYRDPEEIEKEEQATAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVGTTTE S
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTECS 295
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,434,373
Number of extensions: 1416723
Number of successful extensions: 6472
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 6259
Number of HSP's successfully gapped: 37
Length of query: 425
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 319
Effective length of database: 15,340,888
Effective search space: 4893743272
Effective search space used: 4893743272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000908
(1276 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002286.2| 40S ribosomal protein SA [Homo sapiens]. 556 e-158
Alignment gi|NP_001012321.1| 40S ribosomal protein SA [Homo sapiens]. 556 e-158
>ref|NP_002286.2| 40S ribosomal protein SA [Homo sapiens].
Length = 295
Score = 556 bits (1432), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TT+WS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
>ref|NP_001012321.1| 40S ribosomal protein SA [Homo sapiens].
Length = 295
Score = 556 bits (1432), Expect = e-158
Identities = 273/295 (92%), Positives = 274/295 (92%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TT+WS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS 295
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,251,470
Number of extensions: 1373945
Number of successful extensions: 6043
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5896
Number of HSP's successfully gapped: 2
Length of query: 425
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 320
Effective length of database: 14,835,944
Effective search space: 4747502080
Effective search space used: 4747502080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000908
(1276 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086186.1| PREDICTED: 40S ribosomal protein SA-like [Mu... 555 e-158
Alignment gi|NP_035159.3| 40S ribosomal protein SA [Mus musculus]. 555 e-158
Alignment gi|XP_921694.1| PREDICTED: 40S ribosomal protein SA-like isofor... 527 e-150
>ref|XP_003086186.1| PREDICTED: 40S ribosomal protein SA-like [Mus musculus].
Length = 295
Score = 555 bits (1430), Expect = e-158
Identities = 273/295 (92%), Positives = 273/295 (92%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
>ref|NP_035159.3| 40S ribosomal protein SA [Mus musculus].
Length = 295
Score = 555 bits (1430), Expect = e-158
Identities = 273/295 (92%), Positives = 273/295 (92%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
QPEVADWSEGVQVPSVPIQQFPTEDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
>ref|XP_921694.1| PREDICTED: 40S ribosomal protein SA-like isoform 1 [Mus musculus].
Length = 295
Score = 527 bits (1357), Expect = e-150
Identities = 260/295 (88%), Positives = 264/295 (89%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MS AL+VLQMKEEDV KFLAAGTHLGGTNL+FQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSRALNVLQMKEEDVFKFLAAGTHLGGTNLEFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARA+VAIENP DVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAVVAIENPPDVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVD+AIPCNNKGAHSVGLM WMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDMAIPCNNKGAHSVGLMKWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVL MRGTISREHPWEVMPDLYFYRDP FQGEWT PAPEFTA
Sbjct: 181 EVLCMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTTPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
QPEVA WSEGVQ PSVPIQQFP EDWSAQP TEDWSAAPTAQATEWVG TTEWS
Sbjct: 241 AQPEVAHWSEGVQAPSVPIQQFPMEDWSAQPATEDWSAAPTAQATEWVGATTEWS 295
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,433,278
Number of extensions: 1150343
Number of successful extensions: 5365
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5254
Number of HSP's successfully gapped: 3
Length of query: 425
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 321
Effective length of database: 12,493,815
Effective search space: 4010514615
Effective search space used: 4010514615
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000908
(1276 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032223.1| 40S ribosomal protein SA [Sus scrofa]. 561 e-160
>ref|NP_001032223.1| 40S ribosomal protein SA [Sus scrofa].
Length = 295
Score = 561 bits (1445), Expect = e-160
Identities = 276/295 (93%), Positives = 276/295 (93%)
Frame = +2
Query: 86 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 265
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL 60
Query: 266 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 445
AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
Sbjct: 61 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 446 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 625
LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
Sbjct: 121 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR 180
Query: 626 EVLRMRGTISREHPWEVMPDLYFYRDPXXXXXXXXXXXXXXXXXXXFQGEWTAPAPEFTA 805
EVLRMRGTISREHPWEVMPDLYFYRDP FQGEWTAPAPEFTA
Sbjct: 181 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA 240
Query: 806 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 970
TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS
Sbjct: 241 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPTTEDWSAAPTAQATEWVGTTTEWS 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,646,191
Number of extensions: 1128750
Number of successful extensions: 3975
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3878
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 323
Effective length of database: 8,804,438
Effective search space: 2843833474
Effective search space used: 2843833474
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000908
(1276 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1647 0.0
Sscrofa_Chr17 1285 0.0
Sscrofa_Chr01 1187 0.0
Sscrofa_Chr03 940 0.0
Sscrofa_Chr12 932 0.0
gb|GL894387.2| Sus scrofa unplaced genomic scaffold ChrUScaf2271 844 0.0
Sscrofa_Chr14 829 0.0
Sscrofa_Chr09 829 0.0
Sscrofa_Chr02 615 e-173
Sscrofa_Chr04 599 e-168
>Sscrofa_Chr06
|| Length = 157765593
Score = 1647 bits (831), Expect = 0.0
Identities = 988/1038 (95%), Gaps = 8/1038 (0%)
Strand = Plus / Plus
Query: 7 tcctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaac 66
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 113006060 tcctttccgcgctgctcagaccggggtccatagggcgttgttcttgattcccgtcgtaac 113006119
Query: 67 ttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggagga 126
||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 113006120 ttaaagggaaactttcacaatgtccagagccctcgatgtcttgcaaatgaaagaggagga 113006179
Query: 127 tgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaat 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113006180 tgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaag 113006239
Query: 187 ggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaac 246
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 113006240 ggaacagtacatctacaaaaggaaaagtgatggcatctatgtcataaatctgcagagaac 113006299
Query: 247 ctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgt 306
||||||||| |||||||||| |||||||||| | |||||||||||||||||||| |||||
Sbjct: 113006300 ctgggagaagcttctgttggtggctcgtgccgttgttgccattgaaaacccagctgatgt 113006359
Query: 307 cagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccac 366
||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 113006360 cagtgtcatatcctccaggaacactggccagcgagctgtgct-----ttgctgctgctac 113006414
Query: 367 tggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggc 426
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 113006415 tggagccactcctattgctggcctcttcactcctggaaccttcactaaccagatccaggc 113006474
Query: 427 agccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctct 486
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113006475 agccttccgggagccgagacttctggttgttactgatcccagggctgaccaccagcctct 113006534
Query: 487 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 546
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113006535 cacagaggcctcttacgttaacctgcctgccattgctctgtgtaacacagactcacctct 113006594
Query: 547 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 606
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 113006595 gcgttatgtggacattgccatcccgtgcaacaaaaagggagctctctcagtgggtctgat 113006654
Query: 607 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 666
||||||||||||| ||| ||||||||||||||||||||||| || |||| | ||||||||
Sbjct: 113006655 gtggtggatgctcacccaggaagttctgcgcatgcgtggcatcacctcctgtgaacaccc 113006714
Query: 667 atgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaaga 726
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 113006715 atgggaagtcatgcctgacctctccttctacagagatcctgaagagattgaaaaggaaga 113006774
Query: 727 gcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcc 786
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113006775 gcaggcttcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcc 113006834
Query: 787 agctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggt 846
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 113006835 agctcctga--tcactgccactcaacctgaggtggcaaattggtccgaaggtgtgcaggt 113006892
Query: 847 gccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactga 906
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113006893 gccttctgtgcccatccagcaattccctgctgaagattggagtgctcagcctaccactga 113006952
Query: 907 agattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtg 966
|||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 113006953 agattggtctgcagttcccactgtgcaggccactgaatgggtaggaacagccactgagtt 113007012
Query: 967 gtcttaagttcttccatgaactctt-attttctaaaaatagaagtgagttggatgtaaaa 1025
||||||||||||||||||||||||| | |||||||||||||||||| |||| || |||||
Sbjct: 113007013 gtcttaagttcttccatgaactcttaagtttctaaaaatagaagtgggttgaatataaaa 113007072
Query: 1026 taaacagtttctaaattg 1043
||||||||||||||||||
Sbjct: 113007073 taaacagtttctaaattg 113007090
Score = 1647 bits (831), Expect = 0.0
Identities = 988/1038 (95%), Gaps = 8/1038 (0%)
Strand = Plus / Plus
Query: 7 tcctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaac 66
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 113111722 tcctttccgcgctgctcagaccggggtccatagggcgttgttcttgattcccgtcgtaac 113111781
Query: 67 ttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggagga 126
||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 113111782 ttaaagggaaactttcacaatgtccagagccctcgatgtcttgcaaatgaaagaggagga 113111841
Query: 127 tgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaat 186
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113111842 tgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaag 113111901
Query: 187 ggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaac 246
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 113111902 ggaacagtacatctacaaaaggaaaagtgatggcatctatgtcataaatctgcagagaac 113111961
Query: 247 ctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgt 306
||||||||| |||||||||| |||||||||| | |||||||||||||||||||| |||||
Sbjct: 113111962 ctgggagaagcttctgttggtggctcgtgccgttgttgccattgaaaacccagctgatgt 113112021
Query: 307 cagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccac 366
||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct: 113112022 cagtgtcatatcctccaggaacactggccagcgagctgtgct-----ttgctgctgctac 113112076
Query: 367 tggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggc 426
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 113112077 tggagccactcctattgctggcctcttcactcctggaaccttcactaaccagatccaggc 113112136
Query: 427 agccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctct 486
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 113112137 agccttccgggagccgagacttctggttgttactgatcccagggctgaccaccagcctct 113112196
Query: 487 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 546
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113112197 cacagaggcctcttacgttaacctgcctgccattgctctgtgtaacacagactcacctct 113112256
Query: 547 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 606
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 113112257 gcgttatgtggacattgccatcccgtgcaacaaaaagggagctctctcagtgggtctgat 113112316
Query: 607 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 666
||||||||||||| ||| ||||||||||||||||||||||| || |||| | ||||||||
Sbjct: 113112317 gtggtggatgctcacccaggaagttctgcgcatgcgtggcatcacctcctgtgaacaccc 113112376
Query: 667 atgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaaga 726
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 113112377 atgggaagtcatgcctgacctctccttctacagagatcctgaagagattgaaaaggaaga 113112436
Query: 727 gcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcc 786
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113112437 gcaggcttcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgcc 113112496
Query: 787 agctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggt 846
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 113112497 agctcctga--tcactgccactcaacctgaggtggcaaattggtccgaaggtgtgcaggt 113112554
Query: 847 gccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactga 906
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113112555 gccttctgtgcccatccagcaattccctgctgaagattggagtgctcagcctaccactga 113112614
Query: 907 agattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtg 966
|||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 113112615 agattggtctgcagttcccactgtgcaggccactgaatgggtaggaacagccactgagtt 113112674
Query: 967 gtcttaagttcttccatgaactctt-attttctaaaaatagaagtgagttggatgtaaaa 1025
||||||||||||||||||||||||| | |||||||||||||||||| |||| || |||||
Sbjct: 113112675 gtcttaagttcttccatgaactcttaagtttctaaaaatagaagtgggttgaatataaaa 113112734
Query: 1026 taaacagtttctaaattg 1043
||||||||||||||||||
Sbjct: 113112735 taaacagtttctaaattg 113112752
Score = 474 bits (239), Expect = e-131
Identities = 616/745 (82%), Gaps = 35/745 (4%)
Strand = Plus / Minus
Query: 94 agccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaac 153
|||||| ||||||||||| || || || |||||| ||||||| | ||||||||||||
Sbjct: 134197925 agcccttgatgtcctgcatataaaggaagaggat---ctcaagtcctttgcagcaggaat 134197869
Query: 154 ccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaaaag 213
|||| | |||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 134197868 ccacttaggtggcactgaccttgacttccaagtggaacagtacatctataaaaggaaaag 134197809
Query: 214 tgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggctcg 273
| ||||| ||||||||||||| ||||||||||||||| ||| ||||||||||| ||||
Sbjct: 134197808 taatggcctctacatcataaacctgaagagaacctggaagatgcttctgttggcagctca 134197749
Query: 274 tgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatactgg 333
|| ||| | ||| || ||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct: 134197748 tgtcattgctgctatggaaaacccagctgatatcagtgtcatatcctccaggaacactgg 134197689
Query: 334 ccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccgctt 393
||| |||||||||||| |||||||||||||| ||||| |||
Sbjct: 134197688 ccaaggagctgtgctgacgtttgctgctgcca------------------ctggcttctt 134197647
Query: 394 cactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctggt 453
| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 134197646 ccctcctggaaccttcgctaaccagatccaggcagctttccgggagccaagacttctgga 134197587
Query: 454 ggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcc 513
|||||| ||||||||||| ||||||| ||||| ||||||||||| || ||||||
Sbjct: 134197586 ggttaccaatcccagggcttcccaccagtctctcctagaggcctcttgcattcgcctgcc 134197527
Query: 514 taccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatcccgtg 573
| ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| | ||
Sbjct: 134197526 tgccattgctccgtgtaacacagactctcctctgcgttatgtggacattgctatctcatg 134197467
Query: 574 caacaacaagggagctcactcagtgggtc-tgatgtggtggatgctcgcccgggaagttc 632
||||||||||||||| |||| | |||| ||||||| || |||| ||||
Sbjct: 134197466 caacaacaagggagc-------atgggacatgat------gatgctcacctgggaggttc 134197420
Query: 633 tgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctctact 692
|| |||||| | |||||||| | ||||||||| ||| ||||||||||| | || ||
Sbjct: 134197419 tgagcatgctctgtgccatctcctgtgaacacccacaggaggtcatgcctgatcgctgct 134197360
Query: 693 tctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtga 752
||| |||||| ||||||| || ||||||| |||||||| ||||||||||| |||||||
Sbjct: 134197359 tcttgggagatcttgaagaggttaaaaaggaggagcaggcagcagctgagaaagctgtga 134197300
Query: 753 ccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactcaac 812
|||||||||||||||||||| ||||||| || |||||| ||||||||||||| | ||| |
Sbjct: 134197299 ccaaggaggaatttcagggtaaatggacggctccagcttctgagttcactgctattcagc 134197240
Query: 813 ctgaggtggcagattggtccgaagg 837
||||||||||||| ||||| |||||
Sbjct: 134197239 ctgaggtggcagactggtctgaagg 134197215
Score = 333 bits (168), Expect = 1e-88
Identities = 580/714 (81%), Gaps = 20/714 (2%)
Strand = Plus / Plus
Query: 107 ctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggc 166
||||||||||| || | ||| |||||||| |||||| ||| | || |||||| | ||||
Sbjct: 111604905 ctgcaaatgaaggaaggggaagtcctcaaattccttacagaggaaatccacctagatggc 111604964
Query: 167 accaaccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctac 226
||||||| ||||||||||| |||||| | | ||||| |||||| || |||||||||
Sbjct: 111604965 gccaacctcaacttccaaatgcaacagtcc--ccacaaagggaaaactggtggcatctat 111605022
Query: 227 atcataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgcc 286
|| ||| ||| || |||| ||||||||| ||||| || ||| ||||||| | | ||
Sbjct: 111605023 gtcgtaagtctaaaaagaatctgggagaaggttctg---gcagcttgtgccattgatacc 111605079
Query: 287 attgaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtg 346
||||||||| | | ||||||| |||||||||||| |||| ||||| |||| |||||||
Sbjct: 111605080 attgaaaactcgactgatgtcactgtcatatcctctaggagtactgaacagcaagctgtg 111605139
Query: 347 ctgaagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaacc 406
|| |||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct: 111605140 ctaaagtttgctgctgccactggagccactcctattgctcactgtgccgttcctggaact 111605199
Query: 407 ttcactaaccagatccaggcagccttccgggagccaagacttctggtggttactgatccc 466
||||||| |||||||| |||| ||||| ||||| |||||||||| |||||||||||||
Sbjct: 111605200 ttcactaggcagatccaagcaggcttccaggagcagagacttctgg-ggttactgatccc 111605258
Query: 467 agggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctg 526
||||||||||| |||||||||| ||||||||||||| |||| ||||||||
Sbjct: 111605259 agggctgaccagcagcctctca-----------tatgttaacctgcttacctttgctctg 111605307
Query: 527 tgtaacacagactcacctctgcgttatgtggacattgccatcccgtgcaa--caacaagg 584
|||||||||||||| ||||| | | | ||||||||||||| || ||||| ||||||||
Sbjct: 111605308 agtaacacagactcaactctgtgctctatggacattgccattccctgcaattcaacaagg 111605367
Query: 585 gagctcactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtg 644
|||||||||||||||||||||||||||||||| || |||||||||||| | || |||
Sbjct: 111605368 aagctcactcagtgggtctgatgtggtggatgccagct-gggaagttctgcccttgtgtg 111605426
Query: 645 gcaccatctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatc 704
|| | ||||||| || |||||| ||| |||||||| | ||||||||| ||| ||| |
Sbjct: 111605427 acatcctctcccgtgagcacccacaggaggtcatgccccatctctacttccacacagacc 111605486
Query: 705 ctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaat 764
| ||||||| |||| ||||||||||||| || ||| | || ||||||||||||||||||
Sbjct: 111605487 cggaagagactgaagaggaagagcaggctgccgctaaaaacactgtgaccaaggaggaat 111605546
Query: 765 ttcagggtgaatggactgcgccagctcctgagttcactgccactcaacctgagg 818
||| |||| ||||||| | | ||||||||| || ||||| ||| || ||||||
Sbjct: 111605547 ttcggggtaaatggacagttctagctcctgaatttactgctacttaaactgagg 111605600
Score = 103 bits (52), Expect = 2e-19
Identities = 152/180 (84%), Gaps = 4/180 (2%)
Strand = Plus / Minus
Query: 306 tcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcca 365
||||||||| |||||| |||| ||||||||| | ||||| | ||||||||||||| ||
Sbjct: 138656572 tcagtgtcacatcctctgggaacactggccagagggctgttccaaagtttgctgctgtca 138656513
Query: 366 ctggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccagg 425
| ||||| || |||||||||| | || || ||||||| || |||||||||||| |||| |
Sbjct: 138656512 c-ggagctacccctattgctg-ctgcctctctcctggcacgttcactaaccaggtccaag 138656455
Query: 426 cagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctc 485
||||||||| || |||| | ||| |||||||| ||||||||||||||| |||||||||||
Sbjct: 138656454 cagccttccagg-gccacgtctt-tggtggttcctgatcccagggctgcccaccagcctc 138656397
>Sscrofa_Chr17
|| Length = 69701581
Score = 1285 bits (648), Expect = 0.0
Identities = 899/980 (91%), Gaps = 2/980 (0%)
Strand = Plus / Minus
Query: 9 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 68
||||| ||||| ||||||| ||||||||||||| ||||||| || |||| | |||||||
Sbjct: 35639978 ctttctgcgctacccagacaggggtccatacggtgttgttcccgactcccttggtaactt 35639919
Query: 69 aaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatg 128
||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 35639918 aaagggaaactttcacaatatctggagcccttgatgtcctgcaaatgaaagaggaggata 35639859
Query: 129 tcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatgg 188
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
Sbjct: 35639858 tcctcaaattccttgcagcagaaacccacctaagtggcaccaaccttgacttcccaatag 35639799
Query: 189 aacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacct 248
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 35639798 aacagtacatctaccaaaggaaaagtgatggcatctacatcataaatctgaagaaagcct 35639739
Query: 249 gggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtca 308
|||||||| || | |||| |||| |||||| ||||||| |||||||||||| ||||||
Sbjct: 35639738 gggagaaattt-taatggctgctcatgccattgttgccagtgaaaacccagctaatgtca 35639680
Query: 309 gtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccactg 368
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 35639679 gtgtcatatcctccaggaatactgctcagagagctgtgctgaagtttgctgctgccactg 35639620
Query: 369 gagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggcag 428
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||
Sbjct: 35639619 gagccactcctattgctggccgctttattcctggaaccctcactaaccagatccaggtag 35639560
Query: 429 ccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctca 488
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35639559 ccttctgggagccaagacttctggtggttactgatccaagggctgagcaccagcctctca 35639500
Query: 489 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgc 548
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35639499 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactctcctctgc 35639440
Query: 549 gttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgt 608
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 35639439 attacgtggacattgctatcccgtgcaacaacaagagagcttgctcagtgggtctgatat 35639380
Query: 609 ggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccat 668
||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct: 35639379 ggtgggtgcttgcccgggaagttccacgcatgtgtggcaccatctcctgtgaacacccag 35639320
Query: 669 gggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagc 728
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 35639319 aggaagtcatgcctgatctctacttcga-agagatcctgaagagattgaaaaggaagagc 35639261
Query: 729 aggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccag 788
|||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35639260 aggcagctgctgagaaggatgtgaccaaggaggaatttcagggtgaatggactgctccag 35639201
Query: 789 ctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtgc 848
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 35639200 ctcctgagttcactgctactcaacctgaggtggcagattggtctgaaggcctgcaggtgc 35639141
Query: 849 cttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaag 908
| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35639140 cctctgtgcccatccagcagttccctactgaagactggagtgctcagcctgccactgaag 35639081
Query: 909 attggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggt 968
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 35639080 attggtctgaagctcccacttctcaggccactgaatgggtaggaatgaccactgagtggt 35639021
Query: 969 cttaagttcttccatgaact 988
||||||||||||||| ||||
Sbjct: 35639020 cttaagttcttccataaact 35639001
Score = 1285 bits (648), Expect = 0.0
Identities = 899/980 (91%), Gaps = 2/980 (0%)
Strand = Plus / Plus
Query: 9 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 68
||||| ||||| ||||||| ||||||||||||| ||||||| || |||| | |||||||
Sbjct: 35825021 ctttctgcgctacccagacaggggtccatacggtgttgttcccgactcccttggtaactt 35825080
Query: 69 aaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatg 128
||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct: 35825081 aaagggaaactttcacaatatctggagcccttgatgtcctgcaaatgaaagaggaggata 35825140
Query: 129 tcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatgg 188
||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| ||| |
Sbjct: 35825141 tcctcaaattccttgcagcagaaacccacctaagtggcaccaaccttgacttcccaatag 35825200
Query: 189 aacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacct 248
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 35825201 aacagtacatctaccaaaggaaaagtgatggcatctacatcataaatctgaagaaagcct 35825260
Query: 249 gggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtca 308
|||||||| || | |||| |||| |||||| ||||||| |||||||||||| ||||||
Sbjct: 35825261 gggagaaattt-taatggctgctcatgccattgttgccagtgaaaacccagctaatgtca 35825319
Query: 309 gtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccactg 368
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 35825320 gtgtcatatcctccaggaatactgctcagagagctgtgctgaagtttgctgctgccactg 35825379
Query: 369 gagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggcag 428
||||||||||||||||||||||||| | |||||||||| |||||||||||||||||| ||
Sbjct: 35825380 gagccactcctattgctggccgctttattcctggaaccctcactaaccagatccaggtag 35825439
Query: 429 ccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcctctca 488
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 35825440 ccttctgggagccaagacttctggtggttactgatccaagggctgagcaccagcctctca 35825499
Query: 489 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgc 548
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 35825500 cagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactctcctctgc 35825559
Query: 549 gttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgt 608
||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 35825560 attacgtggacattgctatcccgtgcaacaacaagagagcttgctcagtgggtctgatat 35825619
Query: 609 ggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccat 668
||||| |||| ||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct: 35825620 ggtgggtgcttgcccgggaagttccacgcatgtgtggcaccatctcctgtgaacacccag 35825679
Query: 669 gggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagc 728
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 35825680 aggaagtcatgcctgatctctacttcga-agagatcctgaagagattgaaaaggaagagc 35825738
Query: 729 aggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccag 788
|||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 35825739 aggcagctgctgagaaggatgtgaccaaggaggaatttcagggtgaatggactgctccag 35825798
Query: 789 ctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgcaggtgc 848
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 35825799 ctcctgagttcactgctactcaacctgaggtggcagattggtctgaaggcctgcaggtgc 35825858
Query: 849 cttctgtgcccatccagcaattccctactgaagattggagtgctcagcctaccactgaag 908
| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct: 35825859 cctctgtgcccatccagcagttccctactgaagactggagtgctcagcctgccactgaag 35825918
Query: 909 attggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggt 968
||||||||| |||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct: 35825919 attggtctgaagctcccacttctcaggccactgaatgggtaggaatgaccactgagtggt 35825978
Query: 969 cttaagttcttccatgaact 988
||||||||||||||| ||||
Sbjct: 35825979 cttaagttcttccataaact 35825998
Score = 555 bits (280), Expect = e-155
Identities = 730/877 (83%), Gaps = 6/877 (0%)
Strand = Plus / Plus
Query: 54 ttcccgtcgtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaa 113
||||| || |||||| |||||| ||||||||||||| || |||| ||||||||||||
Sbjct: 23694315 ttcccatcataactttaagggaaactttcacaatgttgggggccccaaatgtcctgcaaa 23694374
Query: 114 tgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaacc 173
|| ||| ||||||||||| |||||| |||||||||||||| | |||||||||| |
Sbjct: 23694375 gga----ggaagatgtcctcaaattccttacagcaggaacccacttaggtggcaccagct 23694430
Query: 174 ttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataa 233
|||| |||||||||||||||| |||||| |||||| |||||||||||||| |||| |||
Sbjct: 23694431 ttgatttccaaatggaacagtttatctaccaaaggagaagtgatggcatctgcatcttaa 23694490
Query: 234 atctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaa 293
||||| | ||| |||||| | ||| || |||| ||| ||||| | || ||||||||||
Sbjct: 23694491 atctggcgggaatgtgggaggagcttttgatggcagcttgtgcccttgtggccattgaaa 23694550
Query: 294 acccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagt 353
||| || ||||||||| | |||| || |||||| || || || | ||| |||| | |
Sbjct: 23694551 acctaggtaatgtcagtgacctatcgtctaggaatcgtgacccgctaactgggctgca-t 23694609
Query: 354 ttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttcacta 413
||||||||||| ||||||||||||||| |||||| || ||||||||||| | |||||
Sbjct: 23694610 ttgctgctgcctctggagccactcctactgctgggtgcatcactcctggactatccacta 23694669
Query: 414 accagatccaggcagccttccgggagccaagacttctggtggttactgatcccagggctg 473
|||||||||||||||||| | ||||||| ||||| | ||||||||||||||||||||||
Sbjct: 23694670 accagatccaggcagcctcctgggagcccagactcccagtggttactgatcccagggctg 23694729
Query: 474 accaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaaca 533
|||||| |||||| ||||| |||||||||| ||||| | ||||||||||||||
Sbjct: 23694730 cccaccaacctctctcagagttctcttatgttcacctgaccgatgttgctctgtgtaact 23694789
Query: 534 cagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctcact 593
||||| | |||| | ||||||||| ||| ||||| ||||||||||||| | |||||||
Sbjct: 23694790 cagaccctcctccacattatgtggatgttgtcatcctgtgcaacaacaagagggctcact 23694849
Query: 594 cagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatct 653
||||||||||| | |||||||||||| ||| |||||||||| ||||| ||||||||||||
Sbjct: 23694850 cagtgggtctggtatggtggatgctcacccaggaagttctgagcatgtgtggcaccatct 23694909
Query: 654 cccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaagaga 713
||| |||||| ||||| | ||||||||||| ||||||||||||||||||||| || |||
Sbjct: 23694910 cccatgaacactcatggaaggtcatgcctgatctctacttctacagagatcctaaaaaga 23694969
Query: 714 ttgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtg 773
||| |||||||||||||| || |||||||| | |||| |||||||||||||||||||
Sbjct: 23694970 ttggaaaggaagagcaggaggctgctgagaaagtgatgactaaggaggaatttcagggtg 23695029
Query: 774 aatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccg 833
||||||| | ||| |||||||||||||||| | || |||||||| ||||| ||| | |
Sbjct: 23695030 aatggaccactcca-ctcctgagttcactgctgcccagcctgaggttgcagactggcctg 23695088
Query: 834 aaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctc 893
||||||||||||||| |||||||||||||||| ||||| ||||| ||||||| |||
Sbjct: 23695089 caggtgtgcaggtgccccctgtgcccatccagcatttccccactgacaattggagccctc 23695148
Query: 894 agcctaccactgaagattggtctgcagctcccactgc 930
||||| |||| ||||| |||||||| |||||||||||
Sbjct: 23695149 agcctgccaccgaagactggtctgctgctcccactgc 23695185
Score = 107 bits (54), Expect = 1e-20
Identities = 105/122 (86%)
Strand = Plus / Plus
Query: 306 tcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcca 365
||||||||| | || ||||||| ||||||| ||||||| ||| |||||||||| ||
Sbjct: 55065239 tcagtgtcacacccaccaggaagactggccggcgagctatgccgaagtttgctctggctg 55065298
Query: 366 ctggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccagg 425
||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||
Sbjct: 55065299 ctggagccactcctatttctggctgcttcgctcctagaaccttcgctaaccagatccagg 55065358
Query: 426 ca 427
||
Sbjct: 55065359 ca 55065360
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 743 aaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcact 802
||||||||| ||| ||||||||||||||| | |||||| || |||||||||||||| |||
Sbjct: 4629093 aaggctgtgcccagggaggaatttcagggaggatggacggctccagctcctgagtttact 4629034
Query: 803 gc 804
||
Sbjct: 4629033 gc 4629032
Score = 61.9 bits (31), Expect = 8e-07
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 423 aggcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagc 482
||||||||||||| ||| ||| ||||| |||| |||||||||| ||||||||||||
Sbjct: 4629380 aggcagccttccgaaagctgagatgtctgggggttgctgatcccagcactgaccaccagc 4629321
Query: 483 ctctcacagaggcct 497
|||||| ||||||||
Sbjct: 4629320 ctctcatagaggcct 4629306
>Sscrofa_Chr01
|| Length = 315321322
Score = 1187 bits (599), Expect = 0.0
Identities = 878/965 (90%), Gaps = 12/965 (1%)
Strand = Plus / Minus
Query: 29 ggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatg 88
||||||||||| |||||||||||||||||| || | ||||||||||| ||||| ||||||
Sbjct: 263614268 ggggtccatacagcgttgttcttgattcccatcatgacttaaagggaaactttgacaatg 263614209
Query: 89 tccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagca 148
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 263614208 tctggagcccttgatgtcctgcaaatgaaagaggaggatgtcctcaaattccttgcagca 263614149
Query: 149 ggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaagg 208
|||||||||| |||| ||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 263614148 agaacccacctaggtgtcaccaaccttgacttccaaatggcacagtctatgtaaagaagg 263614089
Query: 209 aaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcg 268
||||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||||| |
Sbjct: 263614088 aaaagggatagcatctatatcataa-tctgaagagaacctgggagaa-cttctgttggtg 263614031
Query: 269 gctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaat 328
||||||||||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct: 263614030 gctcgtgccattgttgccactgaagatccagctgatgtcagtgtcatatcctccaggaat 263613971
Query: 329 actggccagcgagctgtgctgaagtttgctgctgccactgg-agccactcctattgctgg 387
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 263613970 actggccatcgagctgtgctgaagtttgctgctgccactgggagccactcctattgctgg 263613911
Query: 388 ccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagact 447
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 263613910 ccgcttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaaga-t 263613852
Query: 448 tctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaa 507
||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 263613851 tctggtggtgactgatcccagggctgaccaccagcatctcacagaagtctcttatgttaa 263613792
Query: 508 cctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccat 567
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 263613791 cctgcctaccattgctctgtgtaacaaagactctcctctgcattatgcggacatagccat 263613732
Query: 568 cccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccggga 627
||| || |||||| ||| |||||||||||||| |||||| ||| ||||||| ||||||||
Sbjct: 263613731 cccatgaaacaacgaggaagctcactcagtgg-tctgatctggcggatgcttgcccggga 263613673
Query: 628 agttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacct 687
|||||||||||||| |||||||||||| || ||||||| ||||||||||||||| | |
Sbjct: 263613672 agttctgcgcatgcctggcaccatctctcgtgaacaccagtgggaagtcatgcctcattt 263613613
Query: 688 ctacttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggc 747
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 263613612 ttacttctacagagatcctgaagagattgaaaaggaagagcaggcagctgctgagaaggc 263613553
Query: 748 tgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccac 807
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct: 263613552 tgtgaccaaggaggaatttcagggtgaatggactgctccagctcctgagttcattgctac 263613493
Query: 808 tcaacctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagca 867
|||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct: 263613492 tcaacctgagatggcagattggtccagaggcgtgcaggtgccttctgtgcccatccatca 263613433
Query: 868 attccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccac 927
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 263613432 gttacctactgaagactggagtgctcagcctaccac-------tggtctgcagctcccac 263613380
Query: 928 tgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaagttcttccatgaac 987
||| |||||||||||||| ||||||||| | |||||||| |||||||||||||||| ||
Sbjct: 263613379 tgctcaggccactgaatgcgtaggaacagctactgagtgatcttaagttcttccatagac 263613320
Query: 988 tctta 992
|||||
Sbjct: 263613319 tctta 263613315
Score = 1136 bits (573), Expect = 0.0
Identities = 856/951 (90%), Gaps = 12/951 (1%)
Strand = Plus / Minus
Query: 32 gtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatgtcc 91
||||||| ||| ||||||||| |||| || || ||||||||||| ||||||||| ||||
Sbjct: 172599884 gtccatatggctttgttcttggttcctgttgtgacttaaagggaaactttcacattgtct 172599825
Query: 92 ggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcagga 151
|||||||| |||||| || |||||||| |||||||||||||| | ||| |||||||||||
Sbjct: 172599824 ggagcccttgatgtcttgtaaatgaaaaaggaggatgtcctctaattctttgcagcagga 172599765
Query: 152 acccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaaa 211
|||||| |||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct: 172599764 acccactgaggtggcaccaggcttgacttcccaatggaacattacatctacaaaaggaaa 172599705
Query: 212 agtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggct 271
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct: 172599704 agcgatggcatctacatcataaatctgaagagaacccgggagaaacttctgtggatggct 172599645
Query: 272 cgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatact 331
|||| | | |||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 172599644 cgtgacgttgttgccattgaaaacccagctgatgtcagtgtcacatcctccaggaatact 172599585
Query: 332 ggccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccgc 391
|||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 172599584 ggccagtgagctatactgaagtttgctgctgccactggagccactcctattgctggccac 172599525
Query: 392 ttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctg 451
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 172599524 ttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaagacttctg 172599465
Query: 452 gtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctg 511
||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 172599464 gtggttacttatccaagagctgaccaccaacctctcacagaggcctcttatattaacctg 172599405
Query: 512 cctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatcccg 571
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct: 172599404 cctaccattgctctgtgtaacacagactcgcctctgcgttatgtggacaatgccatcctg 172599345
Query: 572 tgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccgggaagtt 631
|||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 172599344 tgcaacaacaagagagctcactcagtgggtctgatgtggtgaatgcttgcccagg----- 172599290
Query: 632 ctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctctac 691
||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 172599289 ------atgtgtggcaccatctcccgtgaacacccatgggaagtcatgcctgatttctac 172599236
Query: 692 ttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgtg 751
|||||||||||||||||||||||||||||||| ||| |||| || ||||||| |||||||
Sbjct: 172599235 ttctacagagatcctgaagagattgaaaaggaggaggaggcagcggctgagatggctgtg 172599176
Query: 752 accaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactcaa 811
|||||||||||| |||||||||||| || ||| |||| ||||||||||||||| ||||||
Sbjct: 172599175 accaaggaggaacttcagggtgaatagaatgctccaggtcctgagttcactgctactcaa 172599116
Query: 812 cctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaattc 871
||||||||||||||||||||| |||| ||||||||||||||| | || ||||||| |||
Sbjct: 172599115 cctgaggtggcagattggtccaaaggcatgcaggtgccttctgggtccttccagcagttc 172599056
Query: 872 cctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgcg 931
||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 172599055 cctactgaagactggagtgctcagcct-gcaccgaagattgctctgcagctcccactttt 172598997
Query: 932 caggccactgaatgggtaggaacaaccactgagtggtcttaagttcttcca 982
|||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 172598996 caggccactgaatgggtaggaaaaaccactgagtggtccaaagttcttcca 172598946
Score = 159 bits (80), Expect = 5e-36
Identities = 184/216 (85%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 112 aatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaa 171
|||||| ||||||||||||||||| |||||| || ||||||||||| ||||| |||||
Sbjct: 150365707 aatgaaggaggaggatgtcctcaaattccttacatcaggaacccactcaggtggtaccaa 150365648
Query: 172 ccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcat 231
|||||| |||||||||||||||| ||||||||||||||||| ||||||| | ||| ||||
Sbjct: 150365647 ccttgatttccaaatggaacagt-catctacaaaaggaaaaatgatggcct-tacctcat 150365590
Query: 232 aaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattga 291
| | ||||||||||||||||||| |||||| || |||| |||||| ||||||||| |
Sbjct: 150365589 tactttgaagagaacctgggagaagcttctgccagctgctcctgccattgttgccattta 150365530
Query: 292 aaacccagccgatgtcagtgtcatatcctccaggaa 327
||||| || || ||||| ||| ||||||||||||
Sbjct: 150365529 aaaccttgctgaggtcagggtcccatcctccaggaa 150365494
Score = 143 bits (72), Expect = 3e-31
Identities = 150/176 (85%)
Strand = Plus / Plus
Query: 65 acttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggag 124
||||||||||| ||||| ||||||| |||||||| ||||||||||| || || ||||||
Sbjct: 35664465 acttaaagggaaacttttgcaatgtcaggagcccttgatgtcctgcatataaaggaggag 35664524
Query: 125 gatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaa 184
|||| || || |||||||||||||||||| | | ||||||||| |||||||||||||
Sbjct: 35664525 gatgctcttaaactccttgcagcaggaacccccttaagtggcaccagccttgacttccaa 35664584
Query: 185 atggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaa 240
| |||||| |||| | ||||||||||| |||||||||||| || |||||||||||
Sbjct: 35664585 gtagaacagaacatttgcaaaaggaaaaatgatggcatctatattataaatctgaa 35664640
Score = 79.8 bits (40), Expect = 3e-12
Identities = 210/264 (79%), Gaps = 2/264 (0%)
Strand = Plus / Plus
Query: 179 ttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctg 238
|||||||||||||| |||||| | |||||||||||||||||| | | ||| ||| |||
Sbjct: 131820792 ttccaaatggaacactacatcagccaaaggaaaagtgatggcaccgatatcttaagtcta 131820851
Query: 239 aagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaaccca 298
|||||||||| ||||| |||| |||| | || ||| || | | ||||| |||||||
Sbjct: 131820852 aagagaacctcagagaagattctcctggcagttcctgctattgctaccatttaaaacccc 131820911
Query: 299 gccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgct 358
| || ||||| | ||||||||||||| | |||||| | | ||||| | |||||||||
Sbjct: 131820912 actgaggtcagggccatatcctccaggtgcagtggcca-ccatctgtgttaaagtttgct 131820970
Query: 359 gctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccag 418
|||| |||| |||||||| || | || || ||||||| ||| ||||||| |||| |||
Sbjct: 131820971 gctgtcactagagccactactcct-cttgcggcttcacatctgcaaccttccctaagcag 131821029
Query: 419 atccaggcagccttccgggagcca 442
||||| | ||||||||||||||||
Sbjct: 131821030 atccaagtagccttccgggagcca 131821053
Score = 79.8 bits (40), Expect = 3e-12
Identities = 210/264 (79%), Gaps = 2/264 (0%)
Strand = Plus / Minus
Query: 179 ttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctg 238
|||||||||||||| |||||| | |||||||||||||||||| | | ||| ||| |||
Sbjct: 131893995 ttccaaatggaacactacatcagccaaaggaaaagtgatggcaccgatatcttaagtcta 131893936
Query: 239 aagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaaccca 298
|||||||||| ||||| |||| |||| | || ||| || | | ||||| |||||||
Sbjct: 131893935 aagagaacctcagagaagattctcctggcagttcctgctattgctaccatttaaaacccc 131893876
Query: 299 gccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgct 358
| || ||||| | ||||||||||||| | |||||| | | ||||| | |||||||||
Sbjct: 131893875 actgaggtcagggccatatcctccaggtgcagtggcca-ccatctgtgttaaagtttgct 131893817
Query: 359 gctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccag 418
|||| |||| |||||||| || | || || ||||||| ||| ||||||| |||| |||
Sbjct: 131893816 gctgtcactagagccactactcct-cttgcggcttcacatctgcaaccttccctaagcag 131893758
Query: 419 atccaggcagccttccgggagcca 442
||||| | ||||||||||||||||
Sbjct: 131893757 atccaagtagccttccgggagcca 131893734
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 404 accttcactaaccagatccaggcagccttccgggagccaagacttc 449
|||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 150365454 accttccctaaccagatccaggcatccttccgggagtcaagacttc 150365409
>Sscrofa_Chr03
|| Length = 144787322
Score = 940 bits (474), Expect = 0.0
Identities = 735/817 (89%), Gaps = 10/817 (1%)
Strand = Plus / Plus
Query: 21 cccagaccggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactt 80
||||||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||
Sbjct: 38173001 cccagacaggggtccatacagcgttgtccttgattcccactgtaacttaaagggaaactg 38173060
Query: 81 tcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttcc 140
||||||||||| |||||||| | ||||||||||||||||||||||| |||||||| |||
Sbjct: 38173061 tcacaatgtccagagccctcaaagtcctgcaaatgaaagaggaggaggtcctcaaattct 38173120
Query: 141 ttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatct 200
||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct: 38173121 ttgcagcaggaacccacctaggtgacacc----ttgacttccaaatggaacagtacatct 38173176
Query: 201 acaaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttc 260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 38173177 acaaaaggaaaagtgatggcatctacagcataaatctgaagagaacctgggagaagcttc 38173236
Query: 261 tgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcct 320
|||||| |||| |||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 38173237 ggttggcagctcctgccattgttgccattgagaacccagctgatgtcagtgtcatatcct 38173296
Query: 321 ccaggaatactggccagcgagctgtgctgaagtttgctgctgccactggagccactccta 380
||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||
Sbjct: 38173297 ccaggaatactggccagcgagctgtgctgaagtttgctgctgccactagcgtcacgccta 38173356
Query: 381 ttgctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagc 440
|||||||| ||||||||||||||||||||||||||||| || ||||||||| | |||||
Sbjct: 38173357 gtgctggcctcttcactcctggaaccttcactaaccaga-cccggcagcctt-ctggagc 38173414
Query: 441 caagacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcctctt 500
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct: 38173415 caagacttctggtggttactgaccccagggctgaccaccagcatctcacaga-gcctctt 38173473
Query: 501 atgttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggaca 560
||||||||||||||||||||||||| ||| ||||||| ||||| | ||| |||||||
Sbjct: 38173474 tcattaacctgcctaccattgctctgtgcaacgcagactctcctctacattacgtggaca 38173533
Query: 561 ttgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcg 620
|||||| || || || ||||||||||||||||||||||||||| |||||||||||
Sbjct: 38173534 ttgccagtccatg---cagtaagggagctcactcagtgggtctgatggggtggatgctca 38173590
Query: 621 cccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgc 680
|| ||||| ||||| ||| |||||||||||| | |||||||||||||| |||||||
Sbjct: 38173591 cctaggaagatctgcatgtgcctggcaccatctctcatgaacacccatgggaggtcatgc 38173650
Query: 681 ctgacctctacttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctg 740
|||| |||| ||||||||||||||||||||||| |||||||||||||||||| ||||| |
Sbjct: 38173651 ctgatctctgcttctacagagatcctgaagagactgaaaaggaagagcaggcagcagccg 38173710
Query: 741 agaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttca 800
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 38173711 agaaggctgtgaccaaggaggaatttcagggtgaatggtctgctccacctcctgagttca 38173770
Query: 801 ctgccactcaacctgaggtggcagattggtccgaagg 837
|||| |||||||||||||||||||| |||||| ||||
Sbjct: 38173771 ctgctactcaacctgaggtggcagactggtccaaagg 38173807
Score = 932 bits (470), Expect = 0.0
Identities = 767/864 (88%), Gaps = 19/864 (2%)
Strand = Plus / Minus
Query: 9 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 68
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 139808191 ctttccgcgctgcccagactggggtccacacggcgttgttcttgattcccgtggtaactt 139808132
Query: 69 aaa-gggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 127
||| |||| |||||| ||||||| | |||||||||||||| ||||| | |||||||
Sbjct: 139808131 aaaagggaaactttcgcaatgtctgcagccctcgatgtccagcaaa-----gcggaggat 139808077
Query: 128 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 187
||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 139808076 gtctgcaggttccttgcagcaggaacccaccttgctggcaccaaccttgacttccacatg 139808017
Query: 188 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 247
||||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 139808016 gaacagtacctccacaaaaggaaaagtgatggcatttacatcagaaatcggaagagaacc 139807957
Query: 248 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 307
|||||||| ||||||||||| |||| |||||| |||||||| | | ||||||| || |||
Sbjct: 139807956 tgggagaagcttctgttggcagctcttgccattgttgccatggcagacccagctgaggtc 139807897
Query: 308 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 367
||||||| ||||| ||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 139807896 agtgtcacctcctctaggaatatcggccagtgggctgtgctgaagtttgctgctgccact 139807837
Query: 368 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 427
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 139807836 ggagcccctcctattgctggctgcttcactcctggaaccttccctaaccagatccaggca 139807777
Query: 428 gccttccgggagccaagacttctggtggttactgatcccagggctga-ccaccagcctct 486
|||||| |||||||||||||||||||||| || |||||||||||||| || || ||||||
Sbjct: 139807776 gccttctgggagccaagacttctggtggtgaccgatcccagggctgacccccccgcctct 139807717
Query: 487 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 546
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 139807716 cacagaggcctcctgtgttaacctgcgtaccattgctctgtgtaacacagactcgcctct 139807657
Query: 547 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 606
||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 139807656 gcgttatgtggacatcgccatcccgagcaaccacaagggagctcactcagtgggtccgat 139807597
Query: 607 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 666
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct: 139807596 gtggtagatgctcgcctgggaagttctgcgcatgcgtggcgccatcacccgtgaaccccc 139807537
Query: 667 atgggaagtca---tgcctgacctctacttctacagagatcctgaagagattgaaaagga 723
||||||| || ||||||||||| || ||||||||| ||||||||||||||| ||||
Sbjct: 139807536 gtgggaagccaggtggcctgacctctcctgctacagagaccctgaagagattgaagagga 139807477
Query: 724 agagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgc 783
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139807476 agagcaggcagtggcggagaaggctgtgaccaaggaggaatttcagggtgaatggactgt 139807417
Query: 784 gccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgca 843
|||||||| | |||| |||| ||||||||| ||| |||| ||||| |||||
Sbjct: 139807416 gccagctcttcggttccctgctactcaacct---------gatgggtctgaaggcgtgca 139807366
Query: 844 ggtgccttctgtgcccatccagca 867
|||||| |||||||||||||||||
Sbjct: 139807365 ggtgccctctgtgcccatccagca 139807342
Score = 129 bits (65), Expect = 4e-27
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 912 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtctt 971
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 139807324 ggtctgcagctcccactgctcaggccactgaatgggtaggaacaaccactgagtggtctg 139807265
Query: 972 aagttcttccatgaactctta 992
||||||||||| ||||||||
Sbjct: 139807264 aagttcttccacaaactctta 139807244
Score = 87.7 bits (44), Expect = 1e-14
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 902 actgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccact 961
|||||||| |||||||||||| ||||||| ||||| |||||||||||||||| || ||||
Sbjct: 38173850 actgaagactggtctgcagctgccactgctcaggctactgaatgggtaggaataatcact 38173909
Query: 962 gagtggtcttaa 973
||| ||||||||
Sbjct: 38173910 gaggggtcttaa 38173921
>Sscrofa_Chr12
|| Length = 63588571
Score = 932 bits (470), Expect = 0.0
Identities = 767/864 (88%), Gaps = 19/864 (2%)
Strand = Plus / Minus
Query: 9 ctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaactt 68
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 54882901 ctttccgcgctgcccagactggggtccacacggcgttgttcttgattcccgtggtaactt 54882842
Query: 69 aaa-gggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 127
||| |||| |||||| ||||||| | |||||||||||||| ||||| | |||||||
Sbjct: 54882841 aaaagggaaactttcgcaatgtctgcagccctcgatgtccagcaaa-----gcggaggat 54882787
Query: 128 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 187
||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 54882786 gtctgcaggttccttgcagcaggaacccaccttgctggcaccaaccttgacttccacatg 54882727
Query: 188 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacc 247
||||||||| || |||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct: 54882726 gaacagtacctccacaaaaggaaaagtgatggcatttacatcagaaatcggaagagaacc 54882667
Query: 248 tgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtc 307
|||||||| ||||||||||| |||| |||||| |||||||| | | ||||||| || |||
Sbjct: 54882666 tgggagaagcttctgttggcagctcttgccattgttgccatggcagacccagctgaggtc 54882607
Query: 308 agtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgccact 367
||||||| ||||| ||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 54882606 agtgtcacctcctctaggaatatcggccagtgggctgtgctgaagtttgctgctgccact 54882547
Query: 368 ggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccaggca 427
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 54882546 ggagcccctcctattgctggctgcttcactcctggaaccttccctaaccagatccaggca 54882487
Query: 428 gccttccgggagccaagacttctggtggttactgatcccagggctga-ccaccagcctct 486
|||||| |||||||||||||||||||||| || |||||||||||||| || || ||||||
Sbjct: 54882486 gccttctgggagccaagacttctggtggtgaccgatcccagggctgacccccccgcctct 54882427
Query: 487 cacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacctct 546
|||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 54882426 cacagaggcctcctgtgttaacctgcgtaccattgctctgtgtaacacagactcgcctct 54882367
Query: 547 gcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgat 606
||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct: 54882366 gcgttatgtggacatcgccatcccgagcaaccacaagggagctcactcagtgggtccgat 54882307
Query: 607 gtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacaccc 666
||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||| |||
Sbjct: 54882306 gtggtagatgctcgcctgggaagttctgcgcatgcgtggcgccatcacccgtgaaccccc 54882247
Query: 667 atgggaagtca---tgcctgacctctacttctacagagatcctgaagagattgaaaagga 723
||||||| || ||||||||||| || ||||||||| ||||||||||||||| ||||
Sbjct: 54882246 gtgggaagccaggtggcctgacctctcctgctacagagaccctgaagagattgaagagga 54882187
Query: 724 agagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgc 783
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54882186 agagcaggcagtggcggagaaggctgtgaccaaggaggaatttcagggtgaatggactgt 54882127
Query: 784 gccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgtgca 843
|||||||| | |||| |||| ||||||||| ||| |||| ||||| |||||
Sbjct: 54882126 gccagctcttcggttccctgctactcaacct---------gatgggtctgaaggcgtgca 54882076
Query: 844 ggtgccttctgtgcccatccagca 867
|||||| |||||||||||||||||
Sbjct: 54882075 ggtgccctctgtgcccatccagca 54882052
Score = 129 bits (65), Expect = 4e-27
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 912 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtctt 971
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 54882034 ggtctgcagctcccactgctcaggccactgaatgggtaggaacaaccactgagtggtctg 54881975
Query: 972 aagttcttccatgaactctta 992
||||||||||| ||||||||
Sbjct: 54881974 aagttcttccacaaactctta 54881954
>gb|GL894387.2| Sus scrofa unplaced genomic scaffold ChrUScaf2271
Length = 78668
Score = 844 bits (426), Expect = 0.0
Identities = 626/686 (91%), Gaps = 5/686 (0%)
Strand = Plus / Plus
Query: 29 ggggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatg 88
||||||||||| |||||||||||||||||| || | ||||||||||| ||||| ||||||
Sbjct: 7529 ggggtccatacagcgttgttcttgattcccatcatgacttaaagggaaactttgacaatg 7588
Query: 89 tccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagca 148
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7589 tctggagcccttgatgtcctgcaaatgaaagaggaggatgtcctcaaattccttgcagca 7648
Query: 149 ggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaagg 208
|||||||||| |||| ||||||||||||||||||||||| ||||| || || | ||||
Sbjct: 7649 agaacccacctaggtgtcaccaaccttgacttccaaatggcacagtctatgtaaagaagg 7708
Query: 209 aaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcg 268
||||| ||| ||||||| ||||| ||||||||||||||||||||| |||||||||||| |
Sbjct: 7709 aaaagggatagcatctatatcat-aatctgaagagaacctgggag-aacttctgttggtg 7766
Query: 269 gctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaat 328
||||||||||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct: 7767 gctcgtgccattgttgccactgaagatccagctgatgtcagtgtcatatcctccaggaat 7826
Query: 329 actggccagcgagctgtgctgaagtttgctgctgccact-ggagccactcctattgctgg 387
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7827 actggccatcgagctgtgctgaagtttgctgctgccactgggagccactcctattgctgg 7886
Query: 388 ccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagact 447
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 7887 ccgcttcactcctggaaacttcactaaccagatccaggcagccttctgggagccaaga-t 7945
Query: 448 tctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaa 507
||||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct: 7946 tctggtggtgactgatcccagggctgaccaccagcatctcacagaagtctcttatgttaa 8005
Query: 508 cctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccat 567
|||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| |||||
Sbjct: 8006 cctgcctaccattgctctgtgtaacaaagactctcctctgcattatgcggacatagccat 8065
Query: 568 cccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccggga 627
||| || |||||| ||| |||||||||||| |||||||| ||| ||||||| ||||||||
Sbjct: 8066 cccatgaaacaacgaggaagctcactcagt-ggtctgatctggcggatgcttgcccggga 8124
Query: 628 agttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacct 687
|||||||||||||| |||||||||||| || ||||||| ||||||||||||||| | |
Sbjct: 8125 agttctgcgcatgcctggcaccatctctcgtgaacaccagtgggaagtcatgcctcattt 8184
Query: 688 ctacttctacagagatcctgaagaga 713
|||||||||||||||||||||||||
Sbjct: 8185 ttacttctacagagatcctgaagaga 8210
Score = 200 bits (101), Expect = 1e-48
Identities = 165/187 (88%), Gaps = 7/187 (3%)
Strand = Plus / Plus
Query: 806 actcaacctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccag 865
|||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 8316 actcaacctgagatggcagattggtccagaggcgtgcaggtgccttctgtgcccatccat 8375
Query: 866 caattccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctccc 925
|| || ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 8376 cagttacctactgaagactggagtgctcagcctaccac-------tggtctgcagctccc 8428
Query: 926 actgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaagttcttccatga 985
||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||||
Sbjct: 8429 actgctcaggccactgaatgcgtaggaacagctactgagtgatcttaagttcttccatag 8488
Query: 986 actctta 992
|||||||
Sbjct: 8489 actctta 8495
>Sscrofa_Chr14
|| Length = 153851969
Score = 829 bits (418), Expect = 0.0
Identities = 797/924 (86%), Gaps = 17/924 (1%)
Strand = Plus / Minus
Query: 31 ggtccatacggcgttgttcttgattcccgtcgtaacttaaagggagactttcacaatgtc 90
||||||||| | |||||||| ||||||| ||||||||||| || ||||||||||||||
Sbjct: 101040270 ggtccatacagtgttgttctggattcccactgtaacttaaagagaaactttcacaatgtc 101040211
Query: 91 cggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcagcagg 150
|||| | || |||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 101040210 cggatgttt-gaggtcctgcaaatgaagtaggaggatgtcctcaaattccttgcagcagg 101040152
Query: 151 aacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaaggaa 210
||||||| | |||||||||||||| ||||||||||||||||| |||| ||||||||||||
Sbjct: 101040151 aacccacttaggtggcaccaacctagacttccaaatggaacaatacagctacaaaaggaa 101040092
Query: 211 aagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctgttggcggc 270
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 101040091 aagtgatggcatctacatcataaatctgaagagaacctgggagaaccttctgttggcagt 101040032
Query: 271 tcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctccaggaatac 330
||||||||| |||| ||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 101040031 tcgtgccattgttgtcattgaaaacccagctgatgtcagtgtcatatcttcaaggaatac 101039972
Query: 331 tggccagcgagctgtgctgaagtttgctgctgccactggagccactcctattgctggccg 390
| |||| | ||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 101039971 tagccaccaagctgtgctgaagtttgctactgccactagagccacttctattgctggcca 101039912
Query: 391 cttcactcctggaaccttcactaaccagatccaggcagccttccgggagccaagacttct 450
|||||||| |||| ||||||||||||||||| || ||| ||| ||||||||||||||||
Sbjct: 101039911 tttcactcccggaaacttcactaaccagatccgggtagcattctgggagccaagacttct 101039852
Query: 451 ggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacct 510
|||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 101039851 ggtgtttactgatctcagggctgattaccagcctctcacagaggcctcttatattaacct 101039792
Query: 511 gcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacattgccatccc 570
|| | | |||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct: 101039791 acccccaactgctctgtgtaatacagactctcctctgtattatgtggacattgccatcta 101039732
Query: 571 gtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcccgggaagt 630
||||||||||||||| |||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 101039731 atgcaacaacaagggaactcactcagtgggtctgatgtggtgggtgctggcccaggaaga 101039672
Query: 631 tctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcctgacctcta 690
||||| | ||| ||||||||||||| ||||| ||| ||| ||||||||||| |||||
Sbjct: 101039671 tctgcacttgcatggcaccatctcctatgaaca-ccacaggaggtcatgcctgatctcta 101039613
Query: 691 cttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgt 750
|| || |||| ||||| |||||| ||||||||||||||| || |||||||
Sbjct: 101039612 ctgctgcagatatcctaaagagactgaaaaggaagagcatgcagcagctg---------- 101039563
Query: 751 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactca 810
|||||||| |||||||| || ||||| | ||| ||| ||||||||| | |||||
Sbjct: 101039562 -----aggaggaacttcagggtaaacggactactccatctcatgagttcaccactactca 101039508
Query: 811 acctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaatt 870
|||| | | ||||| |||||| |||| |||| ||||| ||||||||||||||||| ||
Sbjct: 101039507 acctaaagcagcagactggtccaaaggcatgcaagtgccctctgtgcccatccagcagtt 101039448
Query: 871 ccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgc 930
|||||||||||| ||||||||||||||| |||||||| | | ||||| ||||||||||||
Sbjct: 101039447 ccctactgaagactggagtgctcagcctgccactgaaaactagtctgtagctcccactgc 101039388
Query: 931 gcaggccactgaatgggtaggaac 954
|||||||||||||||||||||||
Sbjct: 101039387 tcaggccactgaatgggtaggaac 101039364
Score = 739 bits (373), Expect = 0.0
Identities = 654/746 (87%), Gaps = 15/746 (2%)
Strand = Plus / Plus
Query: 231 taaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattg 290
||||||| | |||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct: 77017853 taaatctaaggagaacctgggagaaacttcggt----ggctcgtgccattgttgccattg 77017908
Query: 291 aaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctga 350
||||||||| | ||||| ||||||||||||||||||||||| | ||| |||||||||||
Sbjct: 77017909 aaaacccagttgttgtcaatgtcatatcctccaggaatactgactagcaagctgtgctga 77017968
Query: 351 agtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttca 410
|||||||||||||||||||||| |||| | ||||||| |||||||||||||||| |||
Sbjct: 77017969 agtttgctgctgccactggagctgttcctgtcgctggccacttcactcctggaaccatca 77018028
Query: 411 ctaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccaggg 470
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 77018029 ctaaccagatccaggcagccttctgggatccaagacttctggtggttactgatcccaggg 77018088
Query: 471 ctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgta 530
||||| || ||||||||||||| |||| |||||||||||| ||||| |||||||||
Sbjct: 77018089 gtgaccgccggcctctcacagagaga-cttacgttaacctgccttccattcctctgtgta 77018147
Query: 531 acacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctc 590
||||||||| || ||||||| ||| | |||||| ||||||||||| |||||||
Sbjct: 77018148 acacagact-------gcattatgtgaacactttcatcccctgcaacaacaaaggagctc 77018200
Query: 591 actcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcacca 650
|||||||||||||||||||||||||||| |||| ||||||| ||| ||| | ||||||||
Sbjct: 77018201 actcagtgggtctgatgtggtggatgctagcccaggaagttgtgcacattcatggcacca 77018260
Query: 651 tctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaag 710
||||| ||||| || ||| || |||||| | |||| ||| ||||||||| ||||
Sbjct: 77018261 cctcccataaacactcacaggaggttatgcctcatctct---tctccagagatccagaag 77018317
Query: 711 agattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagg 770
|||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 77018318 agattgaaaagggagagcaggcagcagctgagaagactgtgaccaaggaggaatttcagg 77018377
Query: 771 gtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggt 830
||||| |||||| |||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 77018378 gtgaactgactgctccagctcctgtgttcactggtactcaacctgaggtggcagactggt 77018437
Query: 831 ccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtg 890
| ||||| ||||| |||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 77018438 ctgaaggcatgcagttgccctctgtgcccatccagcagttccctactgaagactggagtg 77018497
Query: 891 ctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggtag 950
||||||| |||||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct: 77018498 ctcagcccgccactgaagactggtctgcagctcccattgctcaggccactgaatgggtag 77018557
Query: 951 gaacaaccactgagtggtcttaagtt 976
||||||||||||||||||||||||||
Sbjct: 77018558 gaacaaccactgagtggtcttaagtt 77018583
Score = 335 bits (169), Expect = 4e-89
Identities = 220/237 (92%)
Strand = Plus / Plus
Query: 8 cctttccgcgctgcccagaccggggtccatacggcgttgttcttgattcccgtcgtaact 67
||||||| ||||||||||| |||||||||| ||| ||||| ||||||||| | ||||||
Sbjct: 77017365 cctttccacgctgcccagaaaggggtccatatggcattgtttttgattcccattgtaact 77017424
Query: 68 taaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggat 127
|||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||
Sbjct: 77017425 taaagggaaactttcacaatgtctggagcccttgatgtcctgcaaaggaaagaggagaat 77017484
Query: 128 gtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatg 187
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 77017485 gtcctcaaattccttgcagcaggaacccacctaggtggtaccaaccttgacttccaaatg 77017544
Query: 188 gaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 244
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77017545 gaatagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 77017601
>Sscrofa_Chr09
|| Length = 153670197
Score = 829 bits (418), Expect = 0.0
Identities = 802/930 (86%)
Strand = Plus / Minus
Query: 47 ttcttgattcccgtcgtaacttaaagggagactttcacaatgtccggagccctcgatgtc 106
|||| ||||||| || | ||||||||||| | ||||||||| || |||| | | ||||||
Sbjct: 39274007 ttctggattcccatctttacttaaagggaaattttcacaatctctggaggcattgatgtc 39273948
Query: 107 ctgcaaatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggc 166
|| |||||||| |||||||||||||||||| | ||||||||||||||||| | |||| |
Sbjct: 39273947 ctacaaatgaaggaggaggatgtcctcaagaactttgcagcaggaacccacttaggtgac 39273888
Query: 167 accaaccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatctac 226
|||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct: 39273887 accaacctggatttccaaatggaacagtacatctacagaaggaaaagtggtggcatctgc 39273828
Query: 227 atcataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgcc 286
||||||||||||||||||| |||||||| ||||| ||||| ||| ||||||| | |||
Sbjct: 39273827 atcataaatctgaagagaatctgggagaggcttcttttggcagcttgtgccattgctgct 39273768
Query: 287 attgaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtg 346
|||||||||||||| ||||||| ||||| ||||| |||||||| ||| ||||||||
Sbjct: 39273767 attgaaaacccagctgatgtcattgtcacatcctttgggaatacttgcccatgagctgtg 39273708
Query: 347 ctgaagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaacc 406
||| || || |||||||||| |||||||||||||||| | | ||||||||| ||||| |
Sbjct: 39273707 ctggagctttctgctgccacaggagccactcctattgattgttgcttcactcttggaaac 39273648
Query: 407 ttcactaaccagatccaggcagccttccgggagccaagacttctggtggttactgatccc 466
|||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 39273647 ttcactaaccagatccaggcagttttctgggagccaagacttctggtggttattgatccc 39273588
Query: 467 agggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctg 526
||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||
Sbjct: 39273587 agggctgactaccagcctctcccagaggcctcttatgttcacctacctaacattgctcta 39273528
Query: 527 tgtaacacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaaggga 586
|||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 39273527 cgtaacacagactgttctctgcattatgtggacatcaccatcctgtgcaacaacaaggga 39273468
Query: 587 gctcactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggc 646
||||||| |||||||||||||||| | ||||| || ||||||||||| ||||| |||||
Sbjct: 39273467 gctcacttagtgggtctgatgtggcagctgctcacctgggaagttctgtgcatgtgtggc 39273408
Query: 647 accatctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcct 706
||||||||| | |||||| ||||||| |||||||||||||| ||||||| |||| |||||
Sbjct: 39273407 accatctccagtgaacactcatgggaggtcatgcctgacctttacttctgcagaaatcct 39273348
Query: 707 gaagagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaattt 766
|| ||||||||||| |||||||| || ||||||| |||||||| |||||||||||||||
Sbjct: 39273347 gaggagattgaaaaagaagagcaagcagcagctgggaaggctgcaaccaaggaggaattt 39273288
Query: 767 cagggtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagat 826
|||||||||||||||| |||||||||||||||||||| || |||| ||| || |||||
Sbjct: 39273287 cagggtgaatggactggtccagctcctgagttcactgctacgcaacatgatgttgcagac 39273228
Query: 827 tggtccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattgg 886
|| ||| |||| ||||||||| ||| ||||||||||||| |||| ||| |||| | |
Sbjct: 39273227 tgttccaaaggcacgcaggtgccctctttgcccatccagcagttccttaccgaagcctag 39273168
Query: 887 agtgctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgg 946
|||||||||||| |||||||| ||||| ||| | |||| |||||||| ||||||
Sbjct: 39273167 agtgctcagcctgccactgaaatctggtccatagcggtccctgctcaggccaccgaatgg 39273108
Query: 947 gtaggaacaaccactgagtggtcttaagtt 976
|||||||||||||||||||| |||||||||
Sbjct: 39273107 gtaggaacaaccactgagtgctcttaagtt 39273078
Score = 581 bits (293), Expect = e-163
Identities = 543/625 (86%), Gaps = 1/625 (0%)
Strand = Plus / Plus
Query: 350 aagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttc 409
|||||| ||||| |||| |||||||| ||| |||||||| ||||||||||||||||||||
Sbjct: 32883095 aagttttctgctaccaccggagccacccctgttgctggctgcttcactcctggaaccttc 32883154
Query: 410 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccagg 469
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32883155 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgttcccagg 32883214
Query: 470 gctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgctctgtgt 529
| |||||||||||||||| |||| ||||||||||| |||||||| ||| || |||||
Sbjct: 32883215 gatgaccaccagcctctcctagagacctcttatgttcacctgcctcccacggccatgtgt 32883274
Query: 530 aacacagactcacctctgcgttatgtggacattgccatcccgtgcaacaacaagggagct 589
||||||||||| |||||| || |||||||||| |||||| |||||||| ||||||||||
Sbjct: 32883275 aacacagactctcctctgtgtcatgtggacatcaccatcctgtgcaacagcaagggagct 32883334
Query: 590 cactcagtgggtctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcacc 649
|||| | ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||
Sbjct: 32883335 cactttgagggtctgatgtggcagatgctcgcctgggaagttctgtgcatgtgtggcacc 32883394
Query: 650 atctcccgggaacacccatgggaagtcatgcctgacctctacttctacagagatcctgaa 709
| |||| | |||||| ||||||| |||||||||||| ||| ||||| |||||||||||||
Sbjct: 32883395 acctccagtgaacactcatgggaggtcatgcctgacttctccttctgcagagatcctgaa 32883454
Query: 710 gagattgaaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcag 769
||||||| ||| |||||| |||| ||||||| ||| ||||||||||||||| ||||||||
Sbjct: 32883455 gagattgcaaacgaagagaaggcagcagctgggaaagctgtgaccaaggagtaatttcag 32883514
Query: 770 ggtgaatggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattgg 829
||| ||||||| || || |||||||| |||||||| | ||||||| |||| ||| ||
Sbjct: 32883515 ggtaaatggacggctcccgctcctgaattcactgctctttaacctgaagtgggagactga 32883574
Query: 830 tccgaaggtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagt 889
|| ||||| |||||||||| ||||||||||||||||| ||||| ||||||| ||||||
Sbjct: 32883575 tctgaaggcatgcaggtgccctctgtgcccatccagcaggtccct-ctgaagactggagt 32883633
Query: 890 gctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggta 949
||||||||| |||||||||| | | ||| ||||||| |||| || ||||||| |||| |
Sbjct: 32883634 gctcagcctgccactgaagacttgcctgaagctccccctgcccaaaccactgactgggga 32883693
Query: 950 ggaacaaccactgagtggtcttaag 974
| ||||||||||||| ||||||||
Sbjct: 32883694 gaaacaaccactgagcagtcttaag 32883718
Score = 133 bits (67), Expect = 3e-28
Identities = 137/160 (85%), Gaps = 4/160 (2%)
Strand = Plus / Plus
Query: 112 aatgaaagaggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaa 171
|||||| ||||||||||||||||| | |||| ||||||||||| || | |||||| |||
Sbjct: 32882874 aatgaaggaggaggatgtcctcaaatcccttccagcaggaacctacttaagtggcagcaa 32882933
Query: 172 ccttgacttccaaatggaacagtacatctacaaaaggaaaagtgatg----gcatctaca 227
| ||| ||||||| |||||||||| |||||||||||||||||||||| | |||||||
Sbjct: 32882934 ctttggcttccaagtggaacagtatatctacaaaaggaaaagtgatggtatgtatctaca 32882993
Query: 228 tcataaatctgaagagaacctgggagaaacttctgttggc 267
||| ||||||| || |||||||| |||| |||||||||||
Sbjct: 32882994 tcaaaaatctggagtgaacctggcagaagcttctgttggc 32883033
Score = 109 bits (55), Expect = 4e-21
Identities = 319/402 (79%), Gaps = 15/402 (3%)
Strand = Plus / Plus
Query: 171 accttgacttccaaatggaacagtacatctacaaaaggaaaagtgatggcatct-acatc 229
||||||||||||||||| || ||| ||||||||||||||| || |||||||||| |||||
Sbjct: 75449755 accttgacttccaaatgaaagagtccatctacaaaaggaacagagatggcatctcacatc 75449814
Query: 230 ataaatctgaagagaacctgggagaaacttctgttggcggctcgtgccatcgttgccatt 289
|| ||||||||| |||||||||||||||| | |||| | ||| ||||||||
Sbjct: 75449815 atcaatctgaaggaaacctgggagaaactttt-------gctcataccactgttgccatg 75449867
Query: 290 gaaaacccagccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctg 349
|| |||| | ||||||| |||||| ||||||||||||| ||| |||||| ||||
Sbjct: 75449868 gacaacctggatgatgtca-caccatatcttccaggaatactgaccaaagagctgggctg 75449926
Query: 350 aagtttgctgctgccactggagccactcctattgctggccgcttcactcctggaaccttc 409
| |||||||||||| || ||| |||| ||||| || | |||| |||||||| ||||
Sbjct: 75449927 atgtttgctgctgc--ctcaagctactcggcttgcttgctgtttcattcctggaaacttc 75449984
Query: 410 actaaccagatccaggcagccttccgggagccaagacttctggtggttactgatcccagg 469
| | |||||||||||||||| |||||| ||||| ||||||| |||| ||||||
Sbjct: 75449985 aatcgttagatccaggcagccttttgggagctgctacttcaggtggttgctgaccccagg 75450044
Query: 470 gctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccattgc-tctgtg 528
|||||||||||||| | ||| ||| ||||| |||||||||||||| ||| ||| ||
Sbjct: 75450045 actgaccaccagcctgtaacattggcatcttaggttaacctgcctac---tgcttctctg 75450101
Query: 529 taacacagactcacctctgcgttatgtggacattgccatccc 570
|||||||| || ||||| | | ||||||||||||||||||
Sbjct: 75450102 aaacacagattcttctctgtgctgtgtggacattgccatccc 75450143
>Sscrofa_Chr02
|| Length = 162569375
Score = 615 bits (310), Expect = e-173
Identities = 768/914 (84%), Gaps = 5/914 (0%)
Strand = Plus / Plus
Query: 63 taacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagagg 122
|||||| |||||| ||||||||| | | | ||| || |||||||| |||||||| ||||
Sbjct: 88651635 taactttaagggaaactttcacagtattcagagtccctgatgtcctacaaatgaaggagg 88651694
Query: 123 aggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttcc 182
||||||| || || ||||||||||||||||||||| | | ||| |||| |||||||||
Sbjct: 88651695 aggatgttcttaaattccttgcagcaggaacccacttagacagcatcaacgttgacttcc 88651754
Query: 183 aaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaaga 242
|||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct: 88651755 aaatggaatagtacatctacaaaaggaaacgtggcggcatctacctcataaatctgaaga 88651814
Query: 243 gaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccg 302
||||||||||||| |||| ||| |||| |||||| | ||| | ||||||| ||||
Sbjct: 88651815 gaacctgggagaagcttccca-ggcagctcatgccattggtgctactgaaaacacagctc 88651873
Query: 303 atgtcagtgtcatatcctccaggaatactggccagcgagctgtgctga-agtttgctgct 361
||| |||| | | ||||||||| |||||||||| || | |||||| |||||||||||
Sbjct: 88651874 atgccagttttacatcctccagaaatactggcctatgaaccgtgctgccagtttgctgct 88651933
Query: 362 gccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatc 421
||| | |||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct: 88651934 cccaataaagccactcctatcactggctgtttcactcctggaaccttcactaaccagatc 88651993
Query: 422 caggcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccag 481
||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||
Sbjct: 88651994 caggcagccttccgggagccaagacttgtggtggtcactgatctcagggctgcccaccaa 88652053
Query: 482 cctctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactca 541
|||||||||||| ||||||| ||| |||||||| ||| ||||| ||||||||||| |
Sbjct: 88652054 cctctcacagagacctcttaagttgacctgcctgccactgctccacgtaacacagaccct 88652113
Query: 542 cctctgcgttatgtggacattgccatcccgtgcaacaacaagggagctcactcagtgggt 601
|| |||||| |||| ||| ||||||||| | |||| ||||||||||||||||| |||
Sbjct: 88652114 tctgtgcgttgtgtgaacactgccatcccaggtaacagtaagggagctcactcagtaggt 88652173
Query: 602 ctgatgtggtggatgctcgcccgggaagttctgcgcatgcgtggcaccatctcccg-gga 660
||| ||||||||| |||| ||| | |||||| |||||||| ||||| ||| | | | | |
Sbjct: 88652174 ctggtgtggtggaggctcacccagaaagttcagcgcatgcatggcatcattttctgtgaa 88652233
Query: 661 acacccatgggaagtcatgcctgacctctacttctacagagatcctgaagagattgaaaa 720
||||||| |||| ||||||||||| ||| |||| |||||||||||||||||| ||||||
Sbjct: 88652234 acacccaagggaggtcatgcctgatctccacttagacagagatcctgaagagactgaaaa 88652293
Query: 721 ggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaatggac 780
|||||||||||| | |||||||||||||||||||||||||| |||| |||||||| |||
Sbjct: 88652294 ggaagagcaggcagaagctgagaaggctgtgaccaaggaggtattttagggtgaacagac 88652353
Query: 781 tgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaaggtgt 840
| |||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||
Sbjct: 88652354 -actccagctcctgagttgactgctcctcaacctgaggtggcagactggtctgaaggtgt 88652412
Query: 841 gcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctcagcctac 900
||||| || | ||||||||| | ||| |||||||| |||| | || |||||||||| |
Sbjct: 88652413 tcaggtaccctatgtgcccattcggcagttccctaccgaaggtgtgattgctcagcctgc 88652472
Query: 901 cactgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaaccac 960
||||||||| | ||||||| ||| |||| |||||| ||||| | | |||||||||||
Sbjct: 88652473 cactgaagaaaagcctgcagcaccccctgctcaggccgctgaaagag-aggaacaaccaa 88652531
Query: 961 tgagtggtcttaag 974
||| ||||||||||
Sbjct: 88652532 tgaatggtcttaag 88652545
Score = 607 bits (306), Expect = e-171
Identities = 519/587 (88%), Gaps = 6/587 (1%)
Strand = Plus / Plus
Query: 145 agcaggaacccaccttggtggcaccaaccttgacttccaaatgga--acagtacatctac 202
||||||||||||| | ||||| |||||||| |||||||||||||| |||||||||||||
Sbjct: 47865884 agcaggaacccacttaggtggaaccaacctggacttccaaatggagaacagtacatctac 47865943
Query: 203 aaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaacttctg 262
|||||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 47865944 aaaaggaaaagtgagggcatctacatcataaatctgaagagaacccggaagaagcttctg 47866003
Query: 263 ttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatcctcc 322
||||| |||| |||||| | ||||||| ||||| |||| ||||||| || ||||||||||
Sbjct: 47866004 ttggcagctcctgccattgctgccattaaaaactcagctgatgtcaatgacatatcctcc 47866063
Query: 323 aggaatactggccagcgagctgtgctgaagtttgctgctgccactggagccactcctatt 382
||||| |||||||| |||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 47866064 tggaatgctggccagtgagctgtgctaaagtttgctcctgccactggagccacttctatt 47866123
Query: 383 gctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgggagcca 442
|||||| | |||||||||| || ||| ||||||||||||| |||| |||| |||||||
Sbjct: 47866124 gctggctgtttcactcctgcaaggttccctaaccagatccaagcaggcttctaggagcca 47866183
Query: 443 agacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcctcttat 502
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47866184 agacttctggtggttaatgatcccagggctgaccaccagcctctcacagaggcctcttag 47866243
Query: 503 gttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtggacatt 562
||| || ||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct: 47866244 gttcactcacctaccactgctctgtgtaacacagagtttcctctgcgttatgtggacatc 47866303
Query: 563 gccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatgctcgcc 622
||||||| ||| ||||||||||||||||||||||||||||||| || |||||| |||
Sbjct: 47866304 gccatcctgtg---caacaagggagctcactcagtgggtctgatgctgt-gatgcttgcc 47866359
Query: 623 cgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtcatgcct 682
||||| ||||||| ||||| || |||||||||| |||||||||||||| ||||| ||
Sbjct: 47866360 cgggaggttctgcccatgcatgacaccatctcctatgaacacccatgggaggtcatttct 47866419
Query: 683 gacctctacttctacagagatcctgaagagattgaaaaggaagagca 729
||||||||||||||||||| || ||||| |||| |||||||||||||
Sbjct: 47866420 gacctctacttctacagagttcgtgaagtgattaaaaaggaagagca 47866466
Score = 176 bits (89), Expect = 2e-41
Identities = 215/256 (83%), Gaps = 7/256 (2%)
Strand = Plus / Plus
Query: 717 aaaaggaagagcaggccgcagctgagaaggctgtgaccaaggaggaatttcagggtgaat 776
||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 47866649 aaaaggaagagcaggtggcagccaggaaggctgtgaccaaggaggaatttcaggatgaat 47866708
Query: 777 ggactgcgccagctcctgagttcactgccactcaacctgaggtggcagattggtccgaag 836
||| ||| ||||||||||||||| |||||||||||||| |||| |||||| |||
Sbjct: 47866709 ggattgc------tcctgagttcactgctactcaacctgaggtcgcaggctggtccaaag 47866762
Query: 837 gtgtgcaggtgccttctgtgcccatccagcaattccctactgaagattggagtgctcagc 896
| |||||| ||| || ||| ||| ||||| |||| |||||| | || |||||||||
Sbjct: 47866763 gcatgcaggcgccctccgtgtccactcagcagttcctcactgaaaactg-agtgctcagt 47866821
Query: 897 ctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggtaggaacaa 956
| || ||||| | |||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 47866822 ccactgctgaaaactggtctgcagctcccactgctcaggccacagaatgggcaggaacaa 47866881
Query: 957 ccactgagtggtctta 972
||||||||||||||||
Sbjct: 47866882 ccactgagtggtctta 47866897
Score = 161 bits (81), Expect = 1e-36
Identities = 147/169 (86%)
Strand = Plus / Plus
Query: 87 tgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagttccttgcag 146
||||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| |
Sbjct: 143664528 tgtccagagcccttgatgtcctgcaaaggaaaggggaggatgtcctcaaattccttgtgg 143664587
Query: 147 caggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacatctacaaaa 206
|||||| ||| | || |||||| |||||||||||||||||||||||| || ||| ||
Sbjct: 143664588 aaggaactcacttcagtagcaccagccttgacttccaaatggaacagtatattcacacaa 143664647
Query: 207 ggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaa 255
||| || |||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 143664648 ggagaaatgatggtatctgcatcataaatctgaagagaacctgggagaa 143664696
Score = 137 bits (69), Expect = 2e-29
Identities = 313/391 (80%), Gaps = 10/391 (2%)
Strand = Plus / Plus
Query: 60 tcgtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaag 119
|||||| ||||||| | | ||||||||||||| | |||| |||||||||||||||||||
Sbjct: 37349735 tcgtaagttaaaggaaaattttcacaatgtccaaatcccttgatgtcctgcaaatgaaag 37349794
Query: 120 aggaggatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgact 179
|| |||||||| |||| || ||||||||| |||||| | | | ||| || |||||||
Sbjct: 37349795 agaaggatgtcttcaactttcttgcagcaagaaccc---tagatagcatcagtcttgact 37349851
Query: 180 tccaaatggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctga 239
||||| ||||||||||||||||| |||||||||||||| | | | | | | |
Sbjct: 37349852 accaaa-----cagtacatctacaaaagaaaaagtgatggcattaaacttacacacccaa 37349906
Query: 240 agagaacctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccag 299
|||| || |||||||| | |||| || | |||| |||||| |||||| ||||||| |
Sbjct: 37349907 agaggac-tgggagaagcctctgctgacagctcttgccattgttgcctctgaaaacag-g 37349964
Query: 300 ccgatgtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctg 359
| | | |||| ||||||||| || |||||| ||| | ||||||||| ||||||||
Sbjct: 37349965 acaacattggtgttgtatcctccaagattactggtcagtgcactgtgctgaggtttgctg 37350024
Query: 360 ctgccactggagccactcctattgctggccgcttcactcctggaaccttcactaaccaga 419
|||||||||||||||||||||| |||||| ||||||||||||||||| || |||| ||
Sbjct: 37350025 ctgccactggagccactcctatcgctggctgcttcactcctggaaccctccctaatgagt 37350084
Query: 420 tccaggcagccttccgggagccaagacttct 450
|||| ||| ||||| ||||||||||||||||
Sbjct: 37350085 tccaagcaaccttctgggagccaagacttct 37350115
Score = 97.6 bits (49), Expect = 1e-17
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 62 gtaacttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagag 121
|||||||||||||| |||||||||||||| ||| |||| |||||||| | || || |||
Sbjct: 47865532 gtaacttaaagggaaactttcacaatgtctggaacccttgatgtcctttatataaaggag 47865591
Query: 122 gaggatgtcctcaagttccttgcagcaggaacc 154
|||||||||||||| ||||||| ||||||||||
Sbjct: 47865592 gaggatgtcctcaaattccttgtagcaggaacc 47865624
Score = 79.8 bits (40), Expect = 3e-12
Identities = 77/88 (87%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 890 gctcagcctaccactgaagattggtctgcagctcccactgcgcaggccactgaatgggta 949
|||||||| ||||||| || ||| |||||||||||||||| |||||||||||| ||||
Sbjct: 37350518 gctcagcccaccactggggactgggctgcagctcccactgctcaggccactgaacaggta 37350577
Query: 950 gg-aacaaccactgagtggtcttaagtt 976
|| || |||||||||||||||||||||
Sbjct: 37350578 ggaaatgaccactgagtggtcttaagtt 37350605
Score = 73.8 bits (37), Expect = 2e-10
Identities = 64/72 (88%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 193 gtacatctacaaaaggaaa--agtgatggcatctacatcataaatctgaagagaacctgg 250
|||||||| | |||||||| ||||||||||||| ||||||||| |||||||| ||||||
Sbjct: 40361799 gtacatctgccaaaggaaataagtgatggcatctccatcataaacctgaagaggacctgg 40361740
Query: 251 gagaaacttctg 262
|||||||||||
Sbjct: 40361739 cagaaacttctg 40361728
Score = 67.9 bits (34), Expect = 1e-08
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 460 tgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccat 519
|||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| || | |
Sbjct: 134479377 tgatcccagggccgaccaccagtctctcacag-ggcatcttatgttaacctgtctgcagt 134479319
Query: 520 tgctctgtgtaacacagactcacctc 545
|||||| | ||||||||||| ||||
Sbjct: 134479318 ggctctgggcaacacagactctcctc 134479293
Score = 67.9 bits (34), Expect = 1e-08
Identities = 74/86 (86%), Gaps = 1/86 (1%)
Strand = Plus / Minus
Query: 460 tgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctaccat 519
|||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| || | |
Sbjct: 134502836 tgatcccagggccgaccaccagtctctcacag-ggcatcttatgttaacctgtctgcagt 134502778
Query: 520 tgctctgtgtaacacagactcacctc 545
|||||| | ||||||||||| ||||
Sbjct: 134502777 ggctctgggcaacacagactctcctc 134502752
Score = 63.9 bits (32), Expect = 2e-07
Identities = 131/163 (80%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 399 ctggaaccttcactaaccagatccaggcagccttccgggagccaagacttctggtggtta 458
|||||||||| ||||| ||||| |||| || ||||| ||| | | | ||||||||| |||
Sbjct: 40361569 ctggaacctttactaatcagattcaggaaggcttccaggaactacgtcttctggtgttta 40361510
Query: 459 ctgatcccagggctgaccaccagcctctcacagaggcctcttatgttaacctgcctacca 518
||||||||| || ||||| ||||||| | ||| |||||||| |||||| || ||
Sbjct: 40361509 ttgatcccagagcctaccactagcctcttccggagctgtcttatgtgaacctgtctgcct 40361450
Query: 519 ttgctctgtgtaacacagactcacctctgcgttatgtggacat 561
|||||||||||| |||||||| ||||||| ||||| |||||
Sbjct: 40361449 ttgctctgtgta--acagactctcctctgcactatgttgacat 40361409
Score = 60.0 bits (30), Expect = 3e-06
Identities = 95/114 (83%), Gaps = 2/114 (1%)
Strand = Plus / Minus
Query: 692 ttctacagagatcctgaa-gagattgaaaaggaagagcaggccgcagctgagaaggctgt 750
||||||||| |||||||| ||||||| |||||||| |||||| | |||| |||| |||
Sbjct: 40361298 ttctacaga-atcctgaaagagattgtaaaggaagtgcaggctgatgctggaaaggatgt 40361240
Query: 751 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgc 804
|||| ||||||||||||| ||||| || || |||||||||||||| |||||
Sbjct: 40361239 gacccaggaggaatttcaaggtgagcataccgctccagctcctgagtttactgc 40361186
>Sscrofa_Chr04
|| Length = 143465943
Score = 599 bits (302), Expect = e-168
Identities = 755/899 (83%), Gaps = 14/899 (1%)
Strand = Plus / Plus
Query: 79 tttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggaggatgtcctcaagtt 138
|||||||||||| |||||||| | ||| ||| |||||||| ||||||||||| |||| ||
Sbjct: 35717278 tttcacaatgtctggagcccttgctgttctgaaaatgaaaaaggaggatgtcttcaaatt 35717337
Query: 139 ccttgcagcaggaacccaccttggtggcaccaaccttgacttccaaatggaacagtacat 198
|| |||||||||||||||| | | |||| |||| ||||||| ||||||||||||||||||
Sbjct: 35717338 ccctgcagcaggaacccacttagttggccccaatcttgactgccaaatggaacagtacat 35717397
Query: 199 ctacaaaaggaaaagtgatggcatctacatcataaatctgaagagaacctgggagaaact 258
||||| | || ||||||||||||||| ||| |||||||||||||| | ||| |||| ||
Sbjct: 35717398 ctacagatgggaaagtgatggcatctgcattgtaaatctgaagagaccatggaagaagct 35717457
Query: 259 tctgttggcggctcgtgccatcgttgccattgaaaacccagccgatgtcagtgtcatatc 318
||||||||| | ||||||||| | || ||||||||||||| | |||||||||| |||| |
Sbjct: 35717458 tctgttggcagttcgtgccattgctgtcattgaaaacccacctgatgtcagtgccatacc 35717517
Query: 319 ctccaggaatactggccagcga--gctgtgctgaagtttgctgctgccactggagccact 376
|| ||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 35717518 cttcaggaatactgaccagcgaatactgtgctgaa-tttgctgctgctactggagccact 35717576
Query: 377 cctattgctggccgcttcactcctggaaccttcactaaccagatccaggcagccttccgg 436
||||| |||| | ||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 35717577 cctatggctgtctgcttcactcctggaacctttgccgaccagatccaggcagccct---- 35717632
Query: 437 gagccaagacttctggtggttactgatcccagggctgaccaccagcctctcacagaggcc 496
|||| ||||| ||||||||||| |||||| |||||||| ||| ||||||||||||
Sbjct: 35717633 ---ccaaaacttcgggtggttactggtcccagatctgaccacaagcttctcacagaggct 35717689
Query: 497 tcttatgttaacctgcctaccattgctctgtgtaacacagactcacctctgcgttatgtg 556
|| ||||||||| ||||| |||||||||||||||||||| | |||||| ||||||||
Sbjct: 35717690 gctcatgttaaccctcctactgttgctctgtgtaacacagaccctcctctgtgttatgtg 35717749
Query: 557 gacattgccatcccgtgcaacaacaagggagctcactcagtgggtctgatgtggtggatg 616
||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct: 35717750 gacattgccatcctacgcaacaa-tagggggctcactcagtgggtctgatgtggtagatg 35717808
Query: 617 ctcgcccgggaagttctgcgcatgcgtggcaccatctcccgggaacacccatgggaagtc 676
|| | ||||| || || ||||| ||||||||||||| | |||||| || ||| | |
Sbjct: 35717809 cttggccgggtggtcctatacatgcctggcaccatctcctgtgaacactcacaggaggcc 35717868
Query: 677 atgcctgacctctacttctacagagatcctgaagagattgaaaaggaagagcaggccgca 736
|||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||
Sbjct: 35717869 atgcctgatctctacttctacagagatcctgaagagattgaaaaggaggaacagg-agca 35717927
Query: 737 gctgagaaggctgtgaccaaggaggaatttcagggtgaatggactgcgccagctcctgag 796
|||||| ||| ||||||||||||||||||||||||||||| | || ||||||| ||||
Sbjct: 35717928 gctgagcaggtggtgaccaaggaggaatttcagggtgaatgcatggctccagctcttgag 35717987
Query: 797 ttcactgccactcaacctgaggtggcagattggtcc-gaaggtgtgcaggtgccttctgt 855
||||||| ||||||| |||| ||||| | ||| || ||||| |||||||| | |||||
Sbjct: 35717988 ttcactgttactcaacatgagatggcaaactgggcctgaaggcatgcaggtgtcctctgt 35718047
Query: 856 gcccatccagcaattccctactgaagattggagtgctcagcctaccactgaagattggtc 915
|||| ||||| || ||||| |||| || ||||| |||| ||| ||||| |||| ||
Sbjct: 35718048 gcccctccagaaactccctcctgaggactggagaactcaacctgccactaaaga-ccatc 35718106
Query: 916 tgcagctcccactgcgcaggccactgaatgggtaggaacaaccactgagtggtcttaag 974
||||||||| ||||| ||| || ||||||||| | |||||| ||||||||||||||||
Sbjct: 35718107 tgcagctcctactgctcagacctctgaatggggaagaacaagaactgagtggtcttaag 35718165
Score = 204 bits (103), Expect = 9e-50
Identities = 423/524 (80%), Gaps = 18/524 (3%)
Strand = Plus / Minus
Query: 65 acttaaagggagactttcacaatgtccggagccctcgatgtcctgcaaatgaaagaggag 124
||||||||||||| ||| ||||| ||| ||||||| ||||| |||||||||| | ||
Sbjct: 115143147 acttaaagggagatttt-acaatatccagagcccttgatgttatgcaaatgaa---gaag 115143092
Query: 125 gatgtcctcaagttccttgcagcaggaacccaccttggtggcaccaaccttgacttccaa 184
|||||||||| |||||| |||||||||||| | | |||||||| | |||||||||||
Sbjct: 115143091 gatgtcctcagattccttaaggcaggaacccacttagatggcaccagctttgacttccaa 115143032
Query: 185 atggaacagtacatctacaaaaggaaaagtgatggcatctacatcataaatctgaagaga 244
|| |||| |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 115143031 atagaaccc-----ctacaaaaggtaaagtgatagcatctacatcataaatctggagaga 115142977
Query: 245 acctgggagaaacttctgttggcggctcgtgccatcgttgccattgaaaacccagccgat 304
|| ||| ||| |||||| |||| ||||||||| ||||||||| | |||||| |||
Sbjct: 115142976 acttggcggaagcttctgctggccattcgtgccattgttgccattcatttcccagctgat 115142917
Query: 305 gtcagtgtcatatcctccaggaatactggccagcgagctgtgctgaagtttgctgctgcc 364
||| |||||||| ||||||| | ||| |||||||||| | ||||||||||||
Sbjct: 115142916 gtct------tatcctccgtgaatactctc-agccagctgtgctgcactttgctgctgcc 115142864
Query: 365 actggagccactcctattgctggccgcttcactcctggaaccttcactaaccagatccag 424
||||||||||||||| || ||| | ||||||||| |||| | |||||| |||| | ||
Sbjct: 115142863 actggagccactcctgctg-tgggcacttcactcccggaagcctcactacccagttgtag 115142805
Query: 425 gcagccttccgggagccaagacttctggtggttactgatcccagggctgaccaccagcct 484
||||||| | ||||| |||||||| ||||||| |||||| ||||||||| |||||||||
Sbjct: 115142804 gcagcct-cagggagtcaagactttcggtggttcctgatctcagggctgagcaccagcct 115142746
Query: 485 ctcacagaggcctcttatgttaacctgcctaccattgctctgtgtaacacagactcacct 544
| |||||| || ||||||||||| |||||||||| ||| |||||||||||| ||
Sbjct: 115142745 cccacagaagcatcttatgttaatctgcctaccagccctccccataacacagactctccg 115142686
Query: 545 ctgcgttatgtggacattgccatcccgtgcaacaacaagggagc 588
||| |||||||||| ||||||| || ||| ||||||||||||
Sbjct: 115142685 ctgtgttatgtggatattgccacccaatgctgcaacaagggagc 115142642
Score = 137 bits (69), Expect = 2e-29
Identities = 231/284 (81%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 691 cttctacagagatcctgaagagattgaaaaggaagagcaggccgcagctgagaaggctgt 750
||||||||| ||||| ||||||||||| ||||| | ||| || || ||||||| ||||||
Sbjct: 115142578 cttctacagggatcccgaagagattgacaaggatgggcaagcggccgctgagacggctgt 115142519
Query: 751 gaccaaggaggaatttcagggtgaatggactgcgccagctcctgagttcactgccactca 810
||| |||||| |||||||| || |||||| | |||||||| |||||||||||||||||
Sbjct: 115142518 gactaaggagagatttcaggctgtatggaccactccagctcccgagttcactgccactca 115142459
Query: 811 acctgaggtggcagattggtccgaaggtgtgcaggtgccttctgtgcccatccagcaatt 870
|||||| || |||| || |||||||| |||| || ||| ||||||| ||||||| ||
Sbjct: 115142458 acctgaagtcacagactgatccgaaggcgtgcgggcgccctctgtgcgtgtccagcagtt 115142399
Query: 871 ccctactgaagattggagtgctcagcctaccactgaagattggtctgcagctcccactgc 930
||| ||||| | | ||| |||||||| ||| |||| || |||||||||| ||||| ||
Sbjct: 115142398 ccccactgacggtcagagggctcagcccacccctgaggactggtctgcag--cccaccgc 115142341
Query: 931 gcaggccactgaatgggtaggaacaaccactgagtggtcttaag 974
||| || | | ||||| |||||||||| |||||||||||||
Sbjct: 115142340 tcagacccccacaagggtaagaacaaccaccgagtggtcttaag 115142297
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Minus
Query: 912 ggtctgcagctcccactgcgcaggccactgaatgggtaggaacaacc 958
||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 136355360 ggtctgcagctcccactgctcaggccactgagtgggtaggaacaacc 136355314
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,318,941
Number of extensions: 470
Number of successful extensions: 470
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 149
Length of query: 1276
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1255
Effective length of database: 2,808,413,156
Effective search space: 3524558510780
Effective search space used: 3524558510780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)