Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000919
(1140 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209217.1| cytochrome b [Bos taurus]. 365 e-101
>ref|YP_209217.1| cytochrome b [Bos taurus].
Length = 379
Score = 365 bits (937), Expect = e-101
Identities = 189/265 (71%), Positives = 203/265 (76%)
Frame = +3
Query: 6 NIGVVLLFTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKA 185
NIGV+LL TV+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGT+LVE I GGFSVDKA
Sbjct: 114 NIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTNLVEWIWGGFSVDKA 173
Query: 186 TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXX 365
TLTRFFAFHFILPFII A+A VHLLFLHETGSNNPTGISSD+DKIPFHPYYTIKD
Sbjct: 174 TLTRFFAFHFILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGAL 233
Query: 366 XXXXXXXXXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXX 545
GDPDNYTPANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 234 LLILALMLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293
Query: 546 XXXXXXXXXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQL 725
+P+LHTSKQR ++FRPLSQCLF LVADL+TLT IGGQPVEHP+I IGQL
Sbjct: 294 LAFSILILALIPLLHTSKQRSMMFRPLSQCLFWALVADLLTLTWIGGQPVEHPYITIGQL 353
Query: 726 ASILYFXXXXXXXXXXXXXENNLLK 800
AS+LYF EN LLK
Sbjct: 354 ASVLYFLLILVLMPTAGTIENKLLK 378
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,053,117
Number of extensions: 744555
Number of successful extensions: 1931
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1927
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,240,222
Effective search space: 3930301272
Effective search space used: 3930301272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000919
(1140 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008483.1| cytochrome b [Canis lupus familiaris]. 368 e-102
>ref|NP_008483.1| cytochrome b [Canis lupus familiaris].
Length = 379
Score = 368 bits (945), Expect = e-102
Identities = 191/265 (72%), Positives = 204/265 (76%)
Frame = +3
Query: 6 NIGVVLLFTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKA 185
NIG+VLLF +ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGTDLVE I GGFSVDKA
Sbjct: 114 NIGIVLLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKA 173
Query: 186 TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXX 365
TLTRFFAFHFILPFII ALA VHLLFLHETGSNNP+GI+SD DKIPFHPYYTIKD
Sbjct: 174 TLTRFFAFHFILPFIIAALAMVHLLFLHETGSNNPSGITSDSDKIPFHPYYTIKDILGAL 233
Query: 366 XXXXXXXXXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXX 545
GDPDNYTPANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 234 LLLLILMSLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293
Query: 546 XXXXXXXXXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQL 725
+P+LHTSKQR ++FRPLSQCLF +LVADL+TLT IGGQPVEHPFIIIGQ+
Sbjct: 294 LVFSILILAFIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQV 353
Query: 726 ASILYFXXXXXXXXXXXXXENNLLK 800
ASILYF ENNLLK
Sbjct: 354 ASILYFTILLILMPTVSVIENNLLK 378
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,184,565
Number of extensions: 693761
Number of successful extensions: 1979
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1978
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 276
Effective length of database: 15,407,560
Effective search space: 4252486560
Effective search space used: 4252486560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000919
(1140 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024038.1| cytochrome b [Homo sapiens]. 323 2e-88
>ref|YP_003024038.1| cytochrome b [Homo sapiens].
Length = 380
Score = 323 bits (828), Expect = 2e-88
Identities = 167/265 (63%), Positives = 188/265 (70%)
Frame = +3
Query: 6 NIGVVLLFTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKA 185
NIG++LL +ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGTDLV+ I GG+SVD
Sbjct: 114 NIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSP 173
Query: 186 TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXX 365
TLTRFF FHFILPFII ALA +HLLFLHETGSNNP GI+S DKI FHPYYTIKD
Sbjct: 174 TLTRFFTFHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLL 233
Query: 366 XXXXXXXXXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXX 545
GDPDNYT ANPLNTPPHIKPE YFLFAY ILRS+PNKLGG
Sbjct: 234 LFLLSLMTLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLA 293
Query: 546 XXXXXXXXXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQL 725
+PILH SKQ+ ++FRPLSQ L+ +L ADL+ LT IGGQPV +PF IIGQ+
Sbjct: 294 LLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQV 353
Query: 726 ASILYFXXXXXXXXXXXXXENNLLK 800
AS+LYF EN +LK
Sbjct: 354 ASVLYFTTILILMPTISLIENKMLK 378
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,434,527
Number of extensions: 674091
Number of successful extensions: 1934
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1926
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 276
Effective length of database: 14,868,908
Effective search space: 4103818608
Effective search space used: 4103818608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000919
(1140 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904340.1| cytochrome b [Mus musculus]. 350 2e-96
>ref|NP_904340.1| cytochrome b [Mus musculus].
Length = 381
Score = 350 bits (897), Expect = 2e-96
Identities = 183/265 (69%), Positives = 198/265 (74%)
Frame = +3
Query: 6 NIGVVLLFTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKA 185
NIGV+LLF V+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGT LVE I GGFSVDKA
Sbjct: 114 NIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173
Query: 186 TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXX 365
TLTRFFAFHFILPFII ALA VHLLFLHETGSNNPTG++SD DKIPFHPYYTIKD
Sbjct: 174 TLTRFFAFHFILPFIIAALAIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDILGIL 233
Query: 366 XXXXXXXXXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXX 545
GDPDNY PANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 234 IMFLILMTLVLFFPDMLGDPDNYMPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293
Query: 546 XXXXXXXXXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQL 725
MP LHTSKQR ++FRP++Q L+ ILVA+L+ LT IGGQPVEHPFIIIGQL
Sbjct: 294 LILSILILALMPFLHTSKQRSLMFRPITQILYWILVANLLILTWIGGQPVEHPFIIIGQL 353
Query: 726 ASILYFXXXXXXXXXXXXXENNLLK 800
ASI YF E+ +LK
Sbjct: 354 ASISYFSIILILMPISGIIEDKMLK 378
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,693,630
Number of extensions: 573637
Number of successful extensions: 1536
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1530
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 277
Effective length of database: 12,523,851
Effective search space: 3469106727
Effective search space used: 3469106727
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000919
(1140 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008646.1| cytochrome b [Sus scrofa]. 382 e-106
>ref|NP_008646.1| cytochrome b [Sus scrofa].
Length = 379
Score = 382 bits (982), Expect = e-106
Identities = 201/265 (75%), Positives = 209/265 (78%)
Frame = +3
Query: 6 NIGVVLLFTVIATAFIGYVLP*GQISF*GATVITNLLSAIPYIGTDLVE*I*GGFSVDKA 185
NIGVVLLFTV+ATAF+GYVLP GQ+SF GATVITNLLSAIPYIGTDLVE I GGFSVDKA
Sbjct: 114 NIGVVLLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVEWIWGGFSVDKA 173
Query: 186 TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSDIDKIPFHPYYTIKDXXXXX 365
TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSD+DKIPFHPYYTIKD
Sbjct: 174 TLTRFFAFHFILPFIITALAAVHLLFLHETGSNNPTGISSDMDKIPFHPYYTIKDILGAL 233
Query: 366 XXXXXXXXXXXXXXXXXGDPDNYTPANPLNTPPHIKPE*YFLFAYAILRSIPNKLGGXXX 545
GDPDNYTPANPLNTPPHIKPE YFLFAYAILRSIPNKLGG
Sbjct: 234 FMMLILLILVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 293
Query: 546 XXXXXXXXXXMPILHTSKQRGIIFRPLSQCLF*ILVADLITLT*IGGQPVEHPFIIIGQL 725
MP+LHTSKQR ++FRPLSQCLF +LVADLITLT IGGQPVEHPFIIIGQL
Sbjct: 294 LVASILILILMPMLHTSKQRSMMFRPLSQCLFWMLVADLITLTWIGGQPVEHPFIIIGQL 353
Query: 726 ASILYFXXXXXXXXXXXXXENNLLK 800
ASILYF ENNLLK
Sbjct: 354 ASILYFLIILVLMPITSIIENNLLK 378
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,779,358
Number of extensions: 593889
Number of successful extensions: 1141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1139
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 279
Effective length of database: 8,829,335
Effective search space: 2463384465
Effective search space used: 2463384465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000919
(1140 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1059 0.0
Sscrofa_Chr02 858 0.0
Sscrofa_Chr09 553 e-155
Sscrofa_ChrX 468 e-129
Sscrofa_Chr17 436 e-119
gb|GL892964.2| Sus scrofa unplaced genomic scaffold ChrUScaf849 86 5e-14
Sscrofa_Chr04 86 5e-14
Sscrofa_Chr03 72 7e-10
gb|JH118695.1| Sus scrofa unplaced genomic scaffold ChrUScaf1824 68 1e-08
>Sscrofa_Chr15
|| Length = 157681621
Score = 1059 bits (534), Expect = 0.0
Identities = 699/754 (92%)
Strand = Plus / Plus
Query: 48 ttcataggctacgtcctgccctgaggacaaatatcattctgaggagctacggtcatcaca 107
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140261129 ttcataggttacgtcctaccctgaggacaaatatcattctgaggagctacagtcatcaca 140261188
Query: 108 aatctactatcagctatcccttatatcggaacagacctcgtagaatgaatctgagggggc 167
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 140261189 aacctactatcagctatcccttatattggaacaaacctcgtagaatgaatctgagggggc 140261248
Query: 168 ttttccgtcgacaaagcaaccctcacacgattcttcgccttccactttatcctgccattc 227
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 140261249 ttctccgtcgacaaagcaaccctcacacgattcttcgccttccactttattctgcccttc 140261308
Query: 228 atcattaccgccctcgcagccgtacatctcctattcctgcacgaaaccggatccaacaac 287
||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 140261309 atcatcgctgccctcgcaaccgtacatctcctattcctgcacgaaaccggatccaacaac 140261368
Query: 288 cctaccggaatctcatcagacatagacaaaattccatttcacccatactacactattaaa 347
|| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 140261369 cccactggaatttcatcagacatagacaaaattccatttcacccatactatactattaaa 140261428
Query: 348 gacattctaggagccttatttataatactaatcctactaatccttgtactattctcacca 407
||||||||||||||| || | | ||||||| |||||||||| || |||||||||||||||
Sbjct: 140261429 gacattctaggagccctagtcacaatactagtcctactaattctagtactattctcacca 140261488
Query: 408 gacctactaggagacccagacaactacaccccagcaaacccactaaacaccccaccccat 467
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140261489 gacctattaggagacccagacaactacaccccagcaaacccactaaacaccccaccccac 140261548
Query: 468 attaaaccagaatgatatttcttattcgcctacgctattctacgttcaattcctaataaa 527
||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 140261549 attaaaccagaatgatacttcttatttgcctacgctatcctacgctcaattcctaataaa 140261608
Query: 528 ctaggtggagtgttggccctagtagcctccatcctaatcctaattttaatgcccatacta 587
||||| |||||||| || ||||||||||| ||| |||||||||||||||| |||||||||
Sbjct: 140261609 ctaggcggagtgttagctctagtagcctctatcttaatcctaattttaatacccatacta 140261668
Query: 588 cacacatccaaacaacgaggcataatatttcgaccactaagtcaatgcctattctgaata 647
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||
Sbjct: 140261669 cacacatccaaacaacgaagcataatatttcgaccactaagccaatgcctattttgagta 140261728
Query: 648 ctagtagcagacctcattacactaacatgaattggaggacaacccgtagaacacccgttc 707
|||||||||||||| || ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 140261729 ctagtagcagaccttatcgcactaacatgaatcggaggacaacccgtagaacacccattc 140261788
Query: 708 atcatcatcggccaactagcctccatcttatacttcctaatcattctagtattgatacca 767
||| |||| || ||| ||||||| ||| ||||||||||||| ||||||||| | ||||||
Sbjct: 140261789 atcgtcattggtcaattagcctctatcctatacttcctaattattctagtactaatacca 140261848
Query: 768 atcactagcatcatcgaaaacaacctattaaaat 801
|||||||||||||||||||||||||| |||||||
Sbjct: 140261849 atcactagcatcatcgaaaacaacctcttaaaat 140261882
>Sscrofa_Chr02
|| Length = 162569375
Score = 858 bits (433), Expect = 0.0
Identities = 709/801 (88%)
Strand = Plus / Plus
Query: 1 catgaaacattggagtagtcctactatttaccgttatagcaacagccttcataggctacg 60
|||||||||| ||||| | ||| ||||||| |||||||||||||||||||| |||||||
Sbjct: 120061095 catgaaacatcagagtaattctattatttactgttatagcaacagccttcatgggctacg 120061154
Query: 61 tcctgccctgaggacaaatatcattctgaggagctacggtcatcacaaatctactatcag 120
|||| || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 120061155 tcctaccttgaggacaaatatcattctgaggagctactgtcatcacaaacctactatcag 120061214
Query: 121 ctatcccttatatcggaacagacctcgtagaatgaatctgagggggcttttccgtcgaca 180
|||| || ||||| |||||| |||| ||||||||||||||||| || || ||||||||||
Sbjct: 120061215 ctattccctatattggaacaaaccttgtagaatgaatctgaggaggtttctccgtcgaca 120061274
Query: 181 aagcaaccctcacacgattcttcgccttccactttatcctgccattcatcattaccgccc 240
|||||||||| ||||||||||||||||||||||| || ||||| |||||||| | ||||
Sbjct: 120061275 aagcaacccttacacgattcttcgccttccacttcattctgcccttcatcatcgctgccc 120061334
Query: 241 tcgcagccgtacatctcctattcctgcacgaaaccggatccaacaaccctaccggaatct 300
||||||| |||||||| ||||||| |||||||| ||||||| || ||||| ||||| |
Sbjct: 120061335 tcgcagctgtacatcttttattcctacacgaaactggatccagtaatcctactggaattt 120061394
Query: 301 catcagacatagacaaaattccatttcacccatactacactattaaagacattctaggag 360
||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||
Sbjct: 120061395 catcagacatagacaaaattccattccatccatactacaccatcaaagatattctaggag 120061454
Query: 361 ccttatttataatactaatcctactaatccttgtactattctcaccagacctactaggag 420
|| ||||||| |||||| |||||||| ||| |||||||||| | ||||| |||||||||
Sbjct: 120061455 ccctatttatgatactagccctactaaccctagtactattcttagcagacttactaggag 120061514
Query: 421 acccagacaactacaccccagcaaacccactaaacaccccaccccatattaaaccagaat 480
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 120061515 atccagacaactataccccagcaaacccactaaacacaccaccccacattaaaccagaat 120061574
Query: 481 gatatttcttattcgcctacgctattctacgttcaattcctaataaactaggtggagtgt 540
|| | ||| |||| ||||| || || ||||| ||||| || || ||| |||| ||||| |
Sbjct: 120061575 gacacttcctatttgcctatgccatcctacgctcaatccccaacaaattaggcggagtat 120061634
Query: 541 tggccctagtagcctccatcctaatcctaattttaatgcccatactacacacatccaaac 600
| |||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||
Sbjct: 120061635 tagccctagtagcctccatcttaatcctaattctaatacccatgctacacacatccaaac 120061694
Query: 601 aacgaggcataatatttcgaccactaagtcaatgcctattctgaatactagtagcagacc 660
||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 120061695 aacgaagcataatatttcgaccactaagtcaatgcctattttgagtactagtagcagacc 120061754
Query: 661 tcattacactaacatgaattggaggacaacccgtagaacacccgttcatcatcatcggcc 720
|||| |||||||||||||||||||||||||| ||||||||||| ||||| || || || |
Sbjct: 120061755 tcatcacactaacatgaattggaggacaacctgtagaacacccattcattattattggac 120061814
Query: 721 aactagcctccatcttatacttcctaatcattctagtattgataccaatcactagcatca 780
|||||||||| ||| | ||||||||||| ||||| ||| | |||||| ||||||||||||
Sbjct: 120061815 aactagcctctatcgtgtacttcctaattattctggtactaataccagtcactagcatca 120061874
Query: 781 tcgaaaacaacctattaaaat 801
||||||||||||| |||||||
Sbjct: 120061875 tcgaaaacaacctcttaaaat 120061895
Score = 172 bits (87), Expect = 3e-40
Identities = 147/167 (88%)
Strand = Plus / Minus
Query: 592 catccaaacaacgaggcataatatttcgaccactaagtcaatgcctattctgaatactag 651
|||||||||||||| |||||||||||||||||||||| || || ||||| ||| ||||||
Sbjct: 21109243 catccaaacaacgaagcataatatttcgaccactaagccagtgtctattttgagtactag 21109184
Query: 652 tagcagacctcattacactaacatgaattggaggacaacccgtagaacacccgttcatca 711
| ||||||||||||||||| |||||||| ||||||| ||||||||||| || ||||| |
Sbjct: 21109183 tggcagacctcattacactgacatgaatcagaggacagcccgtagaacaaccattcatta 21109124
Query: 712 tcatcggccaactagcctccatcttatacttcctaatcattctagta 758
| ||||| |||||||| | |||| |||||||||||||||| ||||||
Sbjct: 21109123 ttatcggacaactagcattcatcctatacttcctaatcatcctagta 21109077
>Sscrofa_Chr09
|| Length = 153670197
Score = 553 bits (279), Expect = e-155
Identities = 446/499 (89%), Gaps = 2/499 (0%)
Strand = Plus / Plus
Query: 1 catgaaacattggagtagtcctactatttaccgttatagcaacagccttcataggctacg 60
|||||||||| |||||| | ||| ||||||| |||||||||||||||||||| |||||||
Sbjct: 83998540 catgaaacatcggagtaattctattatttactgttatagcaacagccttcatgggctacg 83998599
Query: 61 tcctgccctgaggacaaatatcattctgaggagctacggtcatcacaaatctactatcag 120
||||||| |||||| |||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 83998600 tcctgccttgagga-aaatatcattctgaggagctactgtcatcacaaacctattatcag 83998658
Query: 121 ctatcccttatatcgg-aacagacctcgtagaatgaatctgagggggcttttccgtcgac 179
|||| || ||| | || |||| |||| ||||||||||||||||| || || |||||||||
Sbjct: 83998659 ctattccctatgttgggaacaaaccttgtagaatgaatctgaggaggtttctccgtcgac 83998718
Query: 180 aaagcaaccctcacacgattcttcgccttccactttatcctgccattcatcattaccgcc 239
||||||||||| ||||||||||||||||||||||| || ||||| |||||||| | |||
Sbjct: 83998719 aaagcaacccttacacgattcttcgccttccacttcattctgcccttcatcatcgctgcc 83998778
Query: 240 ctcgcagccgtacatctcctattcctgcacgaaaccggatccaacaaccctaccggaatc 299
|||||||| |||||||| ||||||| ||||||||| ||||||| || ||||| |||||
Sbjct: 83998779 ctcgcagctgtacatcttttattcctacacgaaaccagatccaataatcctactggaatt 83998838
Query: 300 tcatcagacatagacaaaattccatttcacccatactacactattaaagacattctagga 359
||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||||
Sbjct: 83998839 tcatcagacatagacaaaattccatttcatccatactacaccatcaaagatattctagga 83998898
Query: 360 gccttatttataatactaatcctactaatccttgtactattctcaccagacctactagga 419
||| ||||||| |||||| ||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 83998899 gccctatttatgatactagtcctactaaccctagtactattctcaccagacttactagga 83998958
Query: 420 gacccagacaactacaccccagcaaacccactaaacaccccaccccatattaaaccagaa 479
|| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct: 83998959 gatccagacaactataccccagcaaacccgctaaacacaccaccccacattaaaccagaa 83999018
Query: 480 tgatatttcttattcgcct 498
|||||||||||||| ||||
Sbjct: 83999019 tgatatttcttatttgcct 83999037
>Sscrofa_ChrX
|| Length = 144288218
Score = 468 bits (236), Expect = e-129
Identities = 643/776 (82%), Gaps = 7/776 (0%)
Strand = Plus / Plus
Query: 19 tcctactatttaccgttatagcaacagccttcataggctacgtcctgccctgaggacaaa 78
||||||||||||| || ||||||||||| || ||||||||||| | |||||||||||||
Sbjct: 23487710 tcctactatttacagtcatagcaacagcttttataggctacgtattaccctgaggacaaa 23487769
Query: 79 tatcattctgaggagctacggtcatcacaaatctactatcagctatcccttatatcggaa 138
|||||||||| ||||| || |||||||||||||||||||| || ||||| || ||| |||
Sbjct: 23487770 tatcattctggggagcgacagtcatcacaaatctactatcggcaatcccgtacatcagaa 23487829
Query: 139 cagacctcgtagaatgaatctgagggggcttttccgtcgacaaagcaaccctcacacgat 198
||||||| |||||||||||||| || ||||| ||| | |||||||||||||| |||||||
Sbjct: 23487830 cagaccttgtagaatgaatctggggaggcttctccattgacaaagcaaccctaacacgat 23487889
Query: 199 tcttcgccttccactttatcctgccattcatcattaccgccctcgcagccgtacatctcc 258
|||| ||||||||||||||||| || || || || |||||||| ||||||||| | ||||
Sbjct: 23487890 tctttgccttccactttatcctacccttaattatcaccgcccttgcagccgtatacctcc 23487949
Query: 259 tattcctgcacgaaaccggatccaacaaccctaccggaatctcatcagacatag-acaaa 317
|||| || || || || ||||| || ||| | || ||||| || || || |||| | |||
Sbjct: 23487950 tatttctccaggagactggatctaataacaccacaggaatatcgtctgatatagaaaaaa 23488009
Query: 318 attccatttcacccatactacactattaaagacattctaggagccttatttataatacta 377
|| ||||| |||| ||||| || ||||||||||| |||||| | || || |||| |||
Sbjct: 23488010 atcccattccacctgtactataccattaaagacatcctaggaactttgttcctaatccta 23488069
Query: 378 atcctactaatccttgtactattctcaccagacctactaggagacccagacaactacacc 437
||||||| ||||| |||| ||||||||||| |||||||| |||| |||||||| ||
Sbjct: 23488070 gtcctactgatcctaatactgttctcaccagatttactaggataccctgacaactatact 23488129
Query: 438 ccagcaaacccactaaacaccccaccccatattaaaccagaatgatatttcttattcgcc 497
|||||||| |||||||| || |||||| | ||||||||||||||||||||| ||||||||
Sbjct: 23488130 ccagcaaatccactaaatacaccaccctacattaaaccagaatgatatttcctattcgcc 23488189
Query: 498 tacgctattctacgttcaattcctaataaactaggtggagtgttggccctagtagcctcc 557
||| | |||||| | |||| ||| |||||||||| || | | |||||||| |||
Sbjct: 23488190 tacacaattctatgcccaatccctgataaactaggaggcatactagccctagtgttctca 23488249
Query: 558 atcctaatcctaattttaatgcccatactacacacatccaaacaacgaggcataatattt 617
||||| || ||| | | || ||||||||||||||||||||||||||| |||||||||||
Sbjct: 23488250 atcctgattctagtactcatacccatactacacacatccaaacaacgaagcataatattt 23488309
Query: 618 cgaccactaagtcaatgcctattctgaatactagtagcagacctcattacactaacatga 677
|||||||||| ||||| |||||||||||||||||||||||||| | ||||||| ||
Sbjct: 23488310 agaccactaagccaatgtttattctgaatactagtagcagacctc---agactaacacga 23488366
Query: 678 attggaggacaacccgtagaacacccgttcatcatcatcggccaactagcctccatctta 737
||||| |||||||| |||||||| || |||||||||||| |||||||| || || ||
Sbjct: 23488367 attgggggacaacctgtagaacatcc---catcatcatcggacaactagcatcaattcta 23488423
Query: 738 tacttcctaatcattctagtattgataccaatcactagcatcatcgaaaacaacct 793
||||||||| | || |||||| | || ||||| | |||||||| || ||||||||
Sbjct: 23488424 tacttcctatttatcctagtactcatgccaataatcagcatcattgagaacaacct 23488479
Score = 216 bits (109), Expect = 2e-53
Identities = 202/233 (86%)
Strand = Plus / Minus
Query: 421 acccagacaactacaccccagcaaacccactaaacaccccaccccatattaaaccagaat 480
|||| ||||||||||| ||||||||||||||||| || ||||| ||| | ||||||||||
Sbjct: 16344445 accccgacaactacactccagcaaacccactaaatacaccacctcatgtcaaaccagaat 16344386
Query: 481 gatatttcttattcgcctacgctattctacgttcaattcctaataaactaggtggagtgt 540
|||| ||| | ||||||||||| |||||||| ||||| |||||||||||||| || ||
Sbjct: 16344385 gatacttcctgttcgcctacgcaattctacgctcaatccctaataaactaggaggcgtac 16344326
Query: 541 tggccctagtagcctccatcctaatcctaattttaatgcccatactacacacatccaaac 600
| |||||||||||||| |||||||| ||| | |||| || |||| ||||||||||||||
Sbjct: 16344325 tagccctagtagcctcaatcctaattctagtcctaatacctataccacacacatccaaac 16344266
Query: 601 aacgaggcataatatttcgaccactaagtcaatgcctattctgaatactagta 653
||||| |||||||||||| |||||| |||||||||||||||||| | ||||||
Sbjct: 16344265 aacgaagcataatatttccaccactgagtcaatgcctattctgagtgctagta 16344213
>Sscrofa_Chr17
|| Length = 69701581
Score = 436 bits (220), Expect = e-119
Identities = 611/740 (82%), Gaps = 1/740 (0%)
Strand = Plus / Plus
Query: 19 tcctactatttaccgttatagcaacagccttcataggctacgtcctgccctgaggacaaa 78
||||||||||||| || ||||||||||| || |||||||| || || |||||||||||||
Sbjct: 15223725 tcctactatttacagtcatagcaacagcttttataggctatgtactaccctgaggacaaa 15223784
Query: 79 tatcattctgaggagctacggtcatcacaaatctactatcagctatcccttatatcggaa 138
|| |||| ||||||| || ||||||||||| |||| ||||| ||||| || ||| |||
Sbjct: 15223785 taccatttggaggagcaacagtcatcacaaacttactctcagcaatcccatacatccgaa 15223844
Query: 139 cagacctcgtagaatgaatctgagggggcttttccgtcgacaaagcaaccctcacacgat 198
||||||| || |||||||||||||| ||||| ||| | ||||||| |||||||||| |||
Sbjct: 15223845 cagaccttgtggaatgaatctgaggaggcttctccattgacaaagtaaccctcacatgat 15223904
Query: 199 tcttcgccttccactttatcctgccattcatcattaccgccctcgcagccgtacatctcc 258
|||| |||||||||||||| || || |||||||| || ||||| |||||||||| | |
Sbjct: 15223905 tctttgccttccactttattctacccttcatcatcactgcccttgcagccgtacccttac 15223964
Query: 259 tattcctgcacgaaaccggatccaacaaccctaccggaatctcatcagacatagacaaaa 318
||||||| || || |||||||| ||||| || || |||||||| || || | ||| ||||
Sbjct: 15223965 tattcctccatgagaccggatctaacaatcccacaggaatctcgtccgatacagataaaa 15224024
Query: 319 ttccatttcacccatactacactattaaagacattctaggagccttatttataatactaa 378
| ||||| || |||||| ||| ||||||||||| |||||||| ||||| ||| |||
Sbjct: 15224025 tcccattccatccataccacatcattaaagacatcctaggagctttattcctaagtctag 15224084
Query: 379 tcctactaatccttgtactattctcaccagacctactaggagacccagacaactacaccc 438
|||||| || || ||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct: 15224085 tcctacagattctagtactattctcaccagatttactaggagaccctgacaactataccc 15224144
Query: 439 cagcaaacccactaaacaccccaccccatattaaaccagaatgatatttcttattcgcct 498
|||||| ||||||||| || ||| |||||||||||||||||||||| ||| | | ||||
Sbjct: 15224145 cagcaagcccactaaatacaccatcccatattaaaccagaatgatacttcctggttgcct 15224204
Query: 499 acgctattctacgttcaattcctaataaactaggtggagtgttggccctagtagcctcca 558
|| || ||| | |||||| ||||||||||||| || || | || | |||| |||| |
Sbjct: 15224205 ctgcaatcctatgctcaatttctaataaactaggaggcgtactagctccagtatcctcaa 15224264
Query: 559 tcctaatcctaattttaatgcccatactacacacatccaaacaacgaggcataatatttc 618
|||| |||||| | | ||||||||||||||||| ||||||||||| |||||| ||| |
Sbjct: 15224265 tcctcatcctagtactcgtgcccatactacacacacccaaacaacgaagcataacattcc 15224324
Query: 619 gaccactaagtcaatgcctattctgaatactagtagcagacctcattacactaacatgaa 678
||||||| || ||||| | ||||||||||||||||| |||||| | ||| |||| ||||
Sbjct: 15224325 gaccactgagccaatgtccattctgaatactagtaggggacctcctcacagtaacgtgaa 15224384
Query: 679 ttggaggacaacccgtagaacacccgttcatcatcatcggccaactagcctccatcttat 738
||||| ||||||| ||||||||||| |||||||| ||| | |||||||| | || |||
Sbjct: 15224385 ttgga-gacaacctgtagaacaccccttcatcattatccgacaactagcaccaattctat 15224443
Query: 739 acttcctaatcattctagta 758
|||| ||||| |||||||||
Sbjct: 15224444 actttctaattattctagta 15224463
>gb|GL892964.2| Sus scrofa unplaced genomic scaffold ChrUScaf849
Length = 234075
Score = 85.7 bits (43), Expect = 5e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 693 gtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcctaatcatt 752
||||||||||| ||||| || ||||| |||||||| || ||| ||||||||||||||||
Sbjct: 23164 gtagaacacccattcattattatcggacaactagcatctatcctatacttcctaatcatc 23223
Query: 753 ctagtattgataccaatcactagcatcatcgaaaa 787
|||||| | |||||| | || ||||||||||||||
Sbjct: 23224 ctagtactaataccagtaaccagcatcatcgaaaa 23258
>Sscrofa_Chr04
|| Length = 143465943
Score = 85.7 bits (43), Expect = 5e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 693 gtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcctaatcatt 752
||||||||||| ||||| || ||||| |||||||| || ||| ||||||||||||||||
Sbjct: 42660402 gtagaacacccattcattattatcggacaactagcatctatcctatacttcctaatcatc 42660461
Query: 753 ctagtattgataccaatcactagcatcatcgaaaa 787
|||||| | |||||| | || ||||||||||||||
Sbjct: 42660462 ctagtactaataccagtaaccagcatcatcgaaaa 42660496
Score = 85.7 bits (43), Expect = 5e-14
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 693 gtagaacacccgttcatcatcatcggccaactagcctccatcttatacttcctaatcatt 752
||||||||||| ||||| || ||||| |||||||| || ||| ||||||||||||||||
Sbjct: 42746214 gtagaacacccattcattattatcggacaactagcatctatcctatacttcctaatcatc 42746273
Query: 753 ctagtattgataccaatcactagcatcatcgaaaa 787
|||||| | |||||| | || ||||||||||||||
Sbjct: 42746274 ctagtactaataccagtaaccagcatcatcgaaaa 42746308
>Sscrofa_Chr03
|| Length = 144787322
Score = 71.9 bits (36), Expect = 7e-10
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 307 acatagacaaaattccatttcacccatactacactattaaagacattctagg 358
||||||| ||||||||||| |||||| ||||||| |||||||||||||||||
Sbjct: 44471062 acatagataaaattccattccacccacactacacaattaaagacattctagg 44471113
>gb|JH118695.1| Sus scrofa unplaced genomic scaffold ChrUScaf1824
Length = 44508
Score = 67.9 bits (34), Expect = 1e-08
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 250 tacatctcctattcctgcacgaaaccggatccaacaaccctaccggaatctcatcagaca 309
||||||| ||||| || || ||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 23883 tacatcttctatttctacatgaaactggatccaacaacccaacgggaatttcatcagaca 23824
Query: 310 tagaca 315
||||||
Sbjct: 23823 tagaca 23818
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,688,714
Number of extensions: 193
Number of successful extensions: 193
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 14
Length of query: 1140
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1119
Effective length of database: 2,808,413,156
Effective search space: 3142614321564
Effective search space used: 3142614321564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)