Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000941
(1365 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777140.1| 60S ribosomal protein L3 [Bos taurus]. 786 0.0
Alignment gi|NP_001030578.1| 60S ribosomal protein L3-like [Bos taurus]. 645 0.0
>ref|NP_777140.1| 60S ribosomal protein L3 [Bos taurus].
Length = 403
Score = 786 bits (2030), Expect = 0.0
Identities = 388/403 (96%), Positives = 390/403 (96%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD DGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
ME+QVNGGTVAEKLDWARERLEQQVPV+QVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 403
>ref|NP_001030578.1| 60S ribosomal protein L3-like [Bos taurus].
Length = 407
Score = 645 bits (1664), Expect = 0.0
Identities = 301/394 (76%), Positives = 350/394 (88%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DD S+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
RPG K++K+E VEAVTIVETPP+V+VG+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
+WHKSKKKAFTK CK+W+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
ME+Q+NGGTVAEK+ WA+ RLE+QVPV+ VF Q+E+IDVI SRWHTKKL
Sbjct: 181 MEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+IG+G ++DGK++K
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNAST YD++DKSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV R+AL
Sbjct: 301 NNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKK 1212
E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,944,559
Number of extensions: 1368879
Number of successful extensions: 5808
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5793
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,174,046
Effective search space: 4946742054
Effective search space used: 4946742054
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000941
(1365 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531732.2| PREDICTED: similar to 60S ribosomal protein L3 ... 787 0.0
Alignment gi|XP_532246.1| PREDICTED: similar to 60S ribosomal protein L3 ... 786 0.0
Alignment gi|XP_868306.1| PREDICTED: similar to 60S ribosomal protein L3 ... 751 0.0
Alignment gi|XP_868298.1| PREDICTED: similar to 60S ribosomal protein L3 ... 673 0.0
Alignment gi|XP_868296.1| PREDICTED: similar to ribosomal protein L3 isof... 665 0.0
Alignment gi|XP_859944.1| PREDICTED: similar to 60S ribosomal protein L3 ... 620 e-178
Alignment gi|XP_868310.1| PREDICTED: similar to 60S ribosomal protein L3 ... 617 e-176
Alignment gi|XP_547185.2| PREDICTED: similar to 60S ribosomal protein L3-... 536 e-152
Alignment gi|XP_868301.1| PREDICTED: similar to 60S ribosomal protein L3 ... 536 e-152
Alignment gi|XP_859912.1| PREDICTED: similar to ribosomal protein L3 isof... 479 e-135
>ref|XP_531732.2| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 2 [Canis
familiaris].
Length = 403
Score = 787 bits (2032), Expect = 0.0
Identities = 387/403 (96%), Positives = 391/403 (97%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 403
>ref|XP_532246.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 1 [Canis
familiaris].
Length = 403
Score = 786 bits (2029), Expect = 0.0
Identities = 386/403 (95%), Positives = 391/403 (97%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 403
>ref|XP_868306.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 8 [Canis
familiaris].
Length = 390
Score = 751 bits (1938), Expect = 0.0
Identities = 373/403 (92%), Positives = 378/403 (93%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGT QQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGT-------------QQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 227
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 228 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 287
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 288 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 347
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 348 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 390
>ref|XP_868298.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 6 [Canis
familiaris].
Length = 358
Score = 673 bits (1737), Expect = 0.0
Identities = 340/403 (84%), Positives = 345/403 (85%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQM
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMH----------- 169
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
EMIDVI SRWHTKKL
Sbjct: 170 ----------------------------------EMIDVIGVTKGKGYKGVTSRWHTKKL 195
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 196 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 255
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 256 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 315
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 316 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 358
>ref|XP_868296.1| PREDICTED: similar to ribosomal protein L3 isoform 5 [Canis
familiaris].
Length = 354
Score = 665 bits (1716), Expect = 0.0
Identities = 340/403 (84%), Positives = 342/403 (84%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSK KKAHL
Sbjct: 121 NWHKSK-------------------------------------------------KKAHL 131
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 192 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 311
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 312 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 354
>ref|XP_859944.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 8 [Canis
familiaris].
Length = 320
Score = 620 bits (1600), Expect = e-178
Identities = 304/320 (95%), Positives = 308/320 (96%)
Frame = +1
Query: 280 MVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGK 459
MV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQD+DGK
Sbjct: 1 MVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDDGK 60
Query: 460 KQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQ 639
KQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQ
Sbjct: 61 KQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQ 120
Query: 640 QVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVA 819
QVPVNQVFGQDEMIDVI SRWHTKKLPRKTHRGLRKVACIGAWHPARVA
Sbjct: 121 QVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVA 180
Query: 820 FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHY 999
FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHY
Sbjct: 181 FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHY 240
Query: 1000 GEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVE 1179
GEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVE
Sbjct: 241 GEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVE 300
Query: 1180 EKKAFMGPLKKDRIAKEEGA 1239
EKKAFMGPLKKDRIAKEEGA
Sbjct: 301 EKKAFMGPLKKDRIAKEEGA 320
>ref|XP_868310.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 9
[Canis familiaris].
Length = 331
Score = 617 bits (1590), Expect = e-176
Identities = 300/317 (94%), Positives = 305/317 (96%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPL 981
NNASTDYDLSDKSINPL
Sbjct: 301 NNASTDYDLSDKSINPL 317
>ref|XP_547185.2| PREDICTED: similar to 60S ribosomal protein L3-like [Canis
familiaris].
Length = 494
Score = 536 bits (1381), Expect = e-152
Identities = 249/333 (74%), Positives = 294/333 (88%)
Frame = +1
Query: 214 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 393
RP +++K+E VEAVTIVETPP+V++G+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK+
Sbjct: 149 RPQHQISKREEVEAVTIVETPPLVVIGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 208
Query: 394 WHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLM 573
WHKSKKKAFTK CKKW+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+M
Sbjct: 209 WHKSKKKAFTKACKKWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIM 268
Query: 574 EIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKLP 753
EIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q+E+IDVI SRWHTKKLP
Sbjct: 269 EIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEVIDVIAVTKGRGVKGVTSRWHTKKLP 328
Query: 754 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 933
RKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+IG+G +++GK++KN
Sbjct: 329 RKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEEGKVVKN 388
Query: 934 NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE 1113
NA+T YD++DKSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV RRALE
Sbjct: 389 NAATSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRRALE 448
Query: 1114 KIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKK 1212
I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 449 NIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 481
>ref|XP_868301.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 7 [Canis
familiaris].
Length = 305
Score = 536 bits (1380), Expect = e-152
Identities = 263/281 (93%), Positives = 268/281 (95%)
Frame = +1
Query: 397 HKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLME 576
H+ KKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHLME
Sbjct: 25 HRGKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLME 84
Query: 577 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKLPR 756
IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKLPR
Sbjct: 85 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 144
Query: 757 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN 936
KTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN
Sbjct: 145 KTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN 204
Query: 937 ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEK 1116
ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEK
Sbjct: 205 ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEK 264
Query: 1117 IDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
IDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 265 IDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 305
Score = 67.8 bits (164), Expect = 2e-11
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPK 132
MSHRKFSAPRHGSLGFLPRKRSSRHRGK K+F K
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKKKAFTK 34
>ref|XP_859912.1| PREDICTED: similar to ribosomal protein L3 isoform 7 [Canis
familiaris].
Length = 251
Score = 479 bits (1233), Expect = e-135
Identities = 239/251 (95%), Positives = 239/251 (95%)
Frame = +1
Query: 487 MKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFG 666
MKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFG
Sbjct: 1 MKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFG 60
Query: 667 QDEMIDVIXXXXXXXXXXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQK 846
QDEMIDVI SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQK
Sbjct: 61 QDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQK 120
Query: 847 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVM 1026
GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVM
Sbjct: 121 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVM 180
Query: 1027 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPL 1206
LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPL
Sbjct: 181 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPL 240
Query: 1207 KKDRIAKEEGA 1239
KKDRIAKEEGA
Sbjct: 241 KKDRIAKEEGA 251
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,885,730
Number of extensions: 1354862
Number of successful extensions: 6077
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 6060
Number of HSP's successfully gapped: 23
Length of query: 455
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 349
Effective length of database: 15,340,888
Effective search space: 5353969912
Effective search space used: 5353969912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000941
(1365 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000958.1| 60S ribosomal protein L3 isoform a [Homo sapien... 786 0.0
Alignment gi|NP_001029025.1| 60S ribosomal protein L3 isoform b [Homo sap... 663 0.0
Alignment gi|NP_005052.1| 60S ribosomal protein L3-like [Homo sapiens]. 640 0.0
>ref|NP_000958.1| 60S ribosomal protein L3 isoform a [Homo sapiens].
Length = 403
Score = 786 bits (2029), Expect = 0.0
Identities = 386/403 (95%), Positives = 390/403 (96%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQDEDGKKQLE+DFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQT+EEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403
>ref|NP_001029025.1| 60S ribosomal protein L3 isoform b [Homo sapiens].
Length = 354
Score = 663 bits (1710), Expect = 0.0
Identities = 338/403 (83%), Positives = 341/403 (84%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSK KKAHL
Sbjct: 121 NWHKSK-------------------------------------------------KKAHL 131
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 192 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 311
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQT+EEKKAFMGPLKKDRIAKEEGA
Sbjct: 312 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 354
>ref|NP_005052.1| 60S ribosomal protein L3-like [Homo sapiens].
Length = 407
Score = 640 bits (1650), Expect = 0.0
Identities = 300/394 (76%), Positives = 348/394 (88%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DD S+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
RPG K++K+E VEAVTIVETPP+V+VG+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
+WHKSKKKAFTK CK+W+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q E+IDVI SRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKI++IG+G ++DGKL+K
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV R+A+
Sbjct: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKK 1212
E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,698,174
Number of extensions: 1307019
Number of successful extensions: 5580
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5552
Number of HSP's successfully gapped: 4
Length of query: 455
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,802,980
Effective search space: 5166240020
Effective search space used: 5166240020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000941
(1365 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038790.2| 60S ribosomal protein L3 [Mus musculus]. 781 0.0
Alignment gi|XP_001475783.2| PREDICTED: 60S ribosomal protein L3-like [Mu... 743 0.0
Alignment gi|XP_982298.1| PREDICTED: 60S ribosomal protein L3-like [Mus m... 729 0.0
Alignment gi|NP_001157417.1| ribosomal protein L3-like isoform 1 [Mus mus... 641 0.0
Alignment gi|NP_079701.1| ribosomal protein L3-like isoform 2 [Mus muscul... 351 7e-97
Alignment gi|XP_001476854.2| PREDICTED: 60S ribosomal protein L3-like, pa... 332 3e-91
>ref|NP_038790.2| 60S ribosomal protein L3 [Mus musculus].
Length = 403
Score = 781 bits (2016), Expect = 0.0
Identities = 381/403 (94%), Positives = 390/403 (96%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD+SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+ GKKQLE+DF+SMKKYCQVIR+IAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDF+MLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQT+EEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 403
>ref|XP_001475783.2| PREDICTED: 60S ribosomal protein L3-like [Mus musculus].
Length = 403
Score = 743 bits (1919), Expect = 0.0
Identities = 365/403 (90%), Positives = 378/403 (93%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSH KFSAPRHGSLGFLPRKRSSRH GKVKSFPKDD+SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHGKFSAPRHGSLGFLPRKRSSRHPGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGS+VNKKEVVEAVTIVE PPMV+VGIVGYVE PRGLRTFKT+FAEHIS+ECKRRFYK
Sbjct: 61 DRPGSEVNKKEVVEAVTIVENPPMVVVGIVGYVENPRGLRTFKTVFAEHISNECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+ GKKQLE+DF+SMKKYCQVIR+IAHTQM LLPL QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMHLLPLCQKKAHF 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEI VNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIPVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYH+RTEINKKIYKI QG+LIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKKIYKICQGHLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDF+MLKGCVVG KKRVLTL KSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGAKKRVLTLCKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQT+EEKKAFMG LKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGSLKKDRIAKEEGA 403
>ref|XP_982298.1| PREDICTED: 60S ribosomal protein L3-like [Mus musculus].
Length = 385
Score = 729 bits (1882), Expect = 0.0
Identities = 361/403 (89%), Positives = 370/403 (91%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD+SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVE VTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEVVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQD+ GKKQLE+DF+SMKKYCQVIR+IAHTQMRLLPLRQKK
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKG-- 178
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
ARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 179 ----------------ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 222
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 223 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 282
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDF+MLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 283 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 342
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQT+EEKKAFMGPLKKDRIAKEEGA
Sbjct: 343 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKEEGA 385
>ref|NP_001157417.1| ribosomal protein L3-like isoform 1 [Mus musculus].
Length = 407
Score = 641 bits (1654), Expect = 0.0
Identities = 299/394 (75%), Positives = 347/394 (88%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHG LGFLP KRS RHRGKVKS+P+DD S+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
RPG K++K+E VEAVTIVETPP+V+VG+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
+WHKSKKKAFTK CK+W+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQ+NGGTVAEK+ W + R+E+QVPV+ VF Q E+IDVI SRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+IG+G ++DGK+++
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKMVR 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNAST YD++DKSI PLGGF HYGEV NDF+MLKGC+ GTKKRV+TLRKSLLV RRAL
Sbjct: 301 NNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRVITLRKSLLVHHSRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKK 1212
E I+LKFIDTTSKFGHG FQT +EK+AFMGP KK
Sbjct: 361 ENIELKFIDTTSKFGHGCFQTAQEKRAFMGPQKK 394
>ref|NP_079701.1| ribosomal protein L3-like isoform 2 [Mus musculus].
Length = 240
Score = 351 bits (901), Expect = 7e-97
Identities = 165/227 (72%), Positives = 192/227 (84%)
Frame = +1
Query: 532 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXX 711
M+LLP RQKKAH+MEIQ+NGGTVAEK+ W + R+E+QVPV+ VF Q E+IDVI
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 712 XXXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 891
SRWHTKKLPRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+I
Sbjct: 61 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 120
Query: 892 GQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTL 1071
G+G ++DGK+++NNAST YD++DKSI PLGGF HYGEV NDF+MLKGC+ GTKKRV+TL
Sbjct: 121 GRGLHMEDGKMVRNNASTSYDVTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRVITL 180
Query: 1072 RKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKK 1212
RKSLLV RRALE I+LKFIDTTSKFGHG FQT +EK+AFMGP KK
Sbjct: 181 RKSLLVHHSRRALENIELKFIDTTSKFGHGCFQTAQEKRAFMGPQKK 227
>ref|XP_001476854.2| PREDICTED: 60S ribosomal protein L3-like, partial [Mus musculus].
Length = 180
Score = 332 bits (852), Expect = 3e-91
Identities = 163/171 (95%), Positives = 167/171 (97%)
Frame = +1
Query: 727 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 906
SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYH+RTEINKKIYKI QG+L
Sbjct: 10 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKKIYKICQGHL 69
Query: 907 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLL 1086
IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDF+MLKGCVVG KKRVLTL KSLL
Sbjct: 70 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGAKKRVLTLCKSLL 129
Query: 1087 VQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
VQTKRRALEKIDLKFIDTTSKFGHGRFQT+EEKKAFMG LKKDRIAKEEGA
Sbjct: 130 VQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGSLKKDRIAKEEGA 180
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,869,493
Number of extensions: 1086415
Number of successful extensions: 4829
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4800
Number of HSP's successfully gapped: 6
Length of query: 455
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 350
Effective length of database: 12,463,779
Effective search space: 4362322650
Effective search space used: 4362322650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000941
(1365 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126059.2| PREDICTED: 60S ribosomal protein L3 [Sus scr... 791 0.0
Alignment gi|XP_003361971.1| PREDICTED: 60S ribosomal protein L3-like, pa... 168 7e-42
>ref|XP_003126059.2| PREDICTED: 60S ribosomal protein L3 [Sus scrofa].
Length = 403
Score = 791 bits (2042), Expect = 0.0
Identities = 391/403 (97%), Positives = 391/403 (97%)
Frame = +1
Query: 31 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 210
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 211 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 390
DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 391 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 570
NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 571 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 750
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 751 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 930
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 931 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 1110
NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360
Query: 1111 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 1239
EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA 403
>ref|XP_003361971.1| PREDICTED: 60S ribosomal protein L3-like, partial [Sus scrofa].
Length = 109
Score = 168 bits (425), Expect = 7e-42
Identities = 78/106 (73%), Positives = 91/106 (85%)
Frame = +1
Query: 880 IYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKR 1059
IY+IG+G + DGK++KNNAST YD++DKSI PLGGF YGEV NDFVMLKGC+ GTKKR
Sbjct: 1 IYRIGRGLHMSDGKMVKNNASTSYDMTDKSITPLGGFPRYGEVNNDFVMLKGCIAGTKKR 60
Query: 1060 VLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFM 1197
V+TLRKSLLV RRALE ++LKFIDTTSKFGHGRFQT +EK+ FM
Sbjct: 61 VITLRKSLLVHHSRRALENVELKFIDTTSKFGHGRFQTAQEKRIFM 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,237,523
Number of extensions: 982461
Number of successful extensions: 3790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3780
Number of HSP's successfully gapped: 2
Length of query: 455
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,804,438
Effective search space: 3107966614
Effective search space used: 3107966614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000941
(1365 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 385 e-104
Sscrofa_Chr04 161 1e-36
gb|GL896094.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 70 3e-09
>Sscrofa_Chr05
|| Length = 111506441
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 33 gtctcacaggaagttctccgctcccaggcacgggtccctgggcttcctgcctcggaagcg 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217938 gtctcacaggaagttctccgctcccaggcacgggtccctgggcttcctgcctcggaagcg 6217997
Query: 93 tagcagccggcaccgcgggaaggtgaagagtttccccaaggatgactcttccaagcccgt 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217998 tagcagccggcaccgcgggaaggtgaagagtttccccaaggatgactcttccaagcccgt 6218057
Query: 153 gcacctcaccgccttccttggctacaaggctggcatgacccacattgtgagggaggtcga 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6218058 gcacctcaccgccttccttggctacaaggctggcatgacccacattgtgagggaggtcga 6218117
Query: 213 taggcctgggtcca 226
||||||||||||||
Sbjct: 6218118 taggcctgggtcca 6218131
Score = 361 bits (182), Expect = 7e-97
Identities = 188/190 (98%)
Strand = Plus / Plus
Query: 530 agatgcgcctgcttcctctccgccagaagaaggcccacctcatggagatccaggtgaacg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221539 agatgcgcctgcttcctctccgccagaagaaggcccacctcatggagatccaggtgaacg 6221598
Query: 590 gaggcacagtggccgaaaaactggactgggcccgggagaggctagagcagcaggtccctg 649
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221599 gaggcacagtggctgaaaaactggactgggcccgggagaggctagagcagcaggtccctg 6221658
Query: 650 tgaaccaggtgtttgggcaggatgagatgattgatgtcattggcgtcaccaagggcaagg 709
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6221659 tgaaccaggtgtttgggcaggatgagatgattgatgtcattggcgtgaccaagggcaagg 6221718
Query: 710 gctacaaagg 719
||||||||||
Sbjct: 6221719 gctacaaagg 6221728
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 717 aggggtcaccagccgttggcataccaagaagctgccccggaagacccaccgggggctccg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222097 aggggtcaccagccgttggcataccaagaagctgccccggaagacccaccgggggctccg 6222156
Query: 777 caaggttgcctgtattggcgcgtggcatcctgcgcgtgtggccttctccgtggcccgggc 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222157 caaggttgcctgtattggcgcgtggcatcctgcgcgtgtggccttctccgtggcccgggc 6222216
Query: 837 tgggcagaaaggctaccatcaccgcacagagatcaacaagaag 879
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222217 tgggcagaaaggctaccatcaccgcacagagatcaacaagaag 6222259
Score = 321 bits (162), Expect = 6e-85
Identities = 168/170 (98%)
Strand = Plus / Plus
Query: 227 aggtgaacaagaaggaagttgtggaggctgtgactattgtggagacgccacccatggtga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219482 aggtgaacaagaaggaagttgtggaggctgtgactattgtggagacgccacccatggtga 6219541
Query: 287 tcgtgggcatcgtgggctacgtggaaacccctcggggcctccggacctttaagaccatct 346
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219542 ttgtgggcatcgtgggctatgtggaaacccctcggggcctccggacctttaagaccatct 6219601
Query: 347 tcgcggagcacatcagcgatgagtgcaagaggcgcttctataagaactgg 396
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219602 tcgcggagcacatcagcgatgagtgcaagaggcgcttctataagaactgg 6219651
Score = 272 bits (137), Expect = 5e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 395 ggcataaatctaagaagaaggccttcaccaaatactgcaagaagtggcaggatgaagatg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6220149 ggcataaatctaagaagaaggccttcaccaaatactgcaagaagtggcaggatgaagatg 6220208
Query: 455 gcaagaagcagttggagagggacttcagtagcatgaagaagtactgccaggtcatccggg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6220209 gcaagaagcagttggagagggacttcagtagcatgaagaagtactgccaggtcatccggg 6220268
Query: 515 tcattgcccacacccag 531
|||||||||||||||||
Sbjct: 6220269 tcattgcccacacccag 6220285
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1076 agtccttgctggtacagaccaaacgacgggccctggagaagatcgatctcaagtttattg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223565 agtccttgctggtacagaccaaacgacgggccctggagaagatcgatctcaagtttattg 6223624
Query: 1136 acaccacctccaagtttggccatggccgcttccagactgtggaggagaagaaggccttca 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223625 acaccacctccaagtttggccatggccgcttccagactgtggaggagaagaaggccttca 6223684
Query: 1196 tgg 1198
|||
Sbjct: 6223685 tgg 6223687
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 877 aagatctacaagatcggccagggctacctcatcaaggacggcaagctgatcaagaacaac 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222657 aagatctacaagatcggccagggctacctcatcaaggacggcaagctgatcaagaacaac 6222716
Query: 937 gcctccacggattacgatctctccgacaagagcatcaatcctctgg 982
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222717 gcctccacggattacgatctctccgacaagagcatcaatcctctgg 6222762
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 981 gggaggctttgtccactatggtgaggtgaccaatgactttgtcatgctcaaaggctgcgt 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223150 gggaggctttgtccactatggtgaggtgaccaatgactttgtcatgctcaaaggctgcgt 6223209
Query: 1041 cgtggggaccaagaagcgagtgctcacccttcgcaag 1077
|||||||||||||||||||||||||||||||||||||
Sbjct: 6223210 cgtggggaccaagaagcgagtgctcacccttcgcaag 6223246
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 1197 gggaccacttaagaaggaccgaattgcaaaggaagaaggggcctaatgacagagattgta 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6223897 gggaccacttaagaaggaccgaattgcaaaggaagaaggggcctaatgacagagattgta 6223956
Query: 1257 aggctggtagagtctcaataaagttattttccagt 1291
|||||||||||||||||||||||||||||||||||
Sbjct: 6223957 aggctggtagagtctcaataaagttattttccagt 6223991
>Sscrofa_Chr04
|| Length = 143465943
Score = 161 bits (81), Expect = 1e-36
Identities = 105/111 (94%), Gaps = 4/111 (3%)
Strand = Plus / Minus
Query: 1184 agaaggccttcatgggaccacttaagaaggaccgaattgcaaaggaagaaggggcctaat 1243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 104524116 agaaggccttcatgggaccacttaagaaggaccgaattgcaaaggaag-aggggcctaat 104524058
Query: 1244 gac---agagattgtaaggctggtagagtctcaataaagttattttccagt 1291
| | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 104524057 ggcagaagagattgtaaggctggtaaagtctcaataaagttattttccagt 104524007
>gb|GL896094.1| Sus scrofa unplaced genomic scaffold chrU_scaffold469
Length = 9453
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 1102 cgggccctggagaagatcgatctcaagtttattgacaccacctccaagtttggccatggc 1161
|||||||||||||| | || || ||||| || ||||||||||||||||| ||||| |||
Sbjct: 8330 cgggccctggagaacgttgagctgaagttcatcgacaccacctccaagttcggccacggc 8271
Query: 1162 cgcttccagac 1172
|||||||||||
Sbjct: 8270 cgcttccagac 8260
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,847,115
Number of extensions: 174
Number of successful extensions: 174
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 11
Length of query: 1365
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1344
Effective length of database: 2,808,413,156
Effective search space: 3774507281664
Effective search space used: 3774507281664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)