Animal-Genome cDNA 20110601C-000953

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000953
         (2985 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068589.1| elongation factor 2 [Bos taurus].                1585   0.0  
Alignment   gi|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein c...   582   e-166
Alignment   gi|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding ...   181   3e-45
Alignment   gi|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding ...   181   3e-45
Alignment   gi|XP_606001.5| PREDICTED: elongation factor Tu GTP binding dom...   180   6e-45
Alignment   gi|NP_001095579.1| ribosome-releasing factor 2, mitochondrial [...   105   3e-22
Alignment   gi|NP_001193078.1| elongation factor G, mitochondrial [Bos taur...    96   2e-19
Alignment   gi|XP_002685002.1| PREDICTED: G elongation factor, mitochondria...    96   2e-19
Alignment   gi|NP_001095537.1| GTP-binding protein GUF1 homolog [Bos taurus].     55   5e-07

>ref|NP_001068589.1| elongation factor 2 [Bos taurus].
          Length = 858

 Score = 1585 bits (4103), Expect = 0.0
 Identities = 795/849 (93%), Positives = 798/849 (93%)
 Frame = +1

Query: 1    RXXRDKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTT 180
            R   DKKA  RN    AH D GK+T TD+   KAG  A ARAGETR TDTRKDEQER  T
Sbjct: 10   RAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCIT 69

Query: 181  XKXTAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 360
             K TA    YELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGAL   
Sbjct: 70   IKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 129

Query: 361  XXXXXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVII 540
                    QTETVLRQAIAERIKPVLMMNKMDRA           YQTFQRIVENVNVII
Sbjct: 130  DCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVII 189

Query: 541  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 720
            STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER
Sbjct: 190  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 249

Query: 721  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 900
            AKKVEDMMKKLWGDRYFDPA GKFSKSA SPDGKKLPRTFCQLILDPIFKVFDAIMNFKK
Sbjct: 250  AKKVEDMMKKLWGDRYFDPATGKFSKSANSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 309

Query: 901  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 1080
            EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC
Sbjct: 310  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 369

Query: 1081 ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 1260
            ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI
Sbjct: 370  ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 429

Query: 1261 MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 1440
            MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE
Sbjct: 430  MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 489

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
            HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA
Sbjct: 490  HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 549

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF
Sbjct: 550  GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 609

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
            PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV
Sbjct: 610  PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 669

Query: 1981 QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 2160
            QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL
Sbjct: 670  QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 729

Query: 2161 YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 2340
            YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEE+QVAGTPMFVVKAYLP
Sbjct: 730  YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEETQVAGTPMFVVKAYLP 789

Query: 2341 VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP 2520
            VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP
Sbjct: 790  VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP 849

Query: 2521 ALDNFLDKL 2547
            ALDNFLDKL
Sbjct: 850  ALDNFLDKL 858


>ref|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein component [Bos taurus].
          Length = 972

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 124  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 183

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 184  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 232

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 233  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 292

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 293  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 342

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 343  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 392

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 393  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 452

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 453  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 512

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 513  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 572

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 573  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 632

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 633  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 692

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 693  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 752

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 753  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 812

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 813  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 872

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 873  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 932

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 933  FMIKTRRRKGLSEDV-SISKFFD 954


>ref|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
            isoform 2 [Bos taurus].
          Length = 1078

 Score =  181 bits (459), Expect = 3e-45
 Identities = 122/425 (28%), Positives = 201/425 (47%), Gaps = 96/425 (22%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            E P  DE  +  ++  P  P           S++  F AF RVFSG+   G ++ ++GP 
Sbjct: 427  EEPKGDEQGVESETPKPVSP---------EGSEQESFIAFARVFSGVARKGKRIFVLGPK 477

Query: 1273 YTP------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVPCGNIVGLVGV 1398
            Y+P               EDL   P      ++   L+MGR +E +E+VP GN++G+ G+
Sbjct: 478  YSPLEFLQQVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGL 537

Query: 1399 DQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQ 1578
              F++K+ T+ T         + F  +P+VRVA+E K+P+++P+LV+G+K L ++DP VQ
Sbjct: 538  QDFVLKSATLCTSPSCPPFIPLNFEATPIVRVAIEPKHPSEMPQLVKGMKLLNQADPCVQ 597

Query: 1579 CIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE---------- 1728
              I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++          
Sbjct: 598  VFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIPFRETITKPPKVDMVNEE 657

Query: 1729 --------------------------ESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDK 1830
                                      +SN L    +PNK   L ++A P P+ + + +++
Sbjct: 658  IGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEE 717

Query: 1831 GE---------VSARQELKQRARYLAEKYEWDVAEAR-----------------KIWCFG 1932
                        S+  E K   + + +K +  + E +                 +IW FG
Sbjct: 718  SSDLIRSMEQLTSSLNEGKNNPQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFG 777

Query: 1933 PDGTGPNILTD----------------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENM 2064
            P   GPNIL +                 +K      ++ +S+V+GFQ AT  G +CEE +
Sbjct: 778  PRKCGPNILVNKSEDFHNSVWTGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPL 837

Query: 2065 RGVRF 2079
             GV F
Sbjct: 838  MGVCF 842



 Score =  150 bits (378), Expect = 8e-36
 Identities = 107/354 (30%), Positives = 163/354 (46%), Gaps = 44/354 (12%)
 Frame = +1

Query: 265  FLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPVLMM 444
            +LINLIDSPGHVDFSSEV+ A+R+ DG +           QT+ VLRQA  E I+PVL++
Sbjct: 35   YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVI 94

Query: 445  NKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY-------------GEGESGPMG--- 576
            NK+DR            Y   + I+E +N +  T               E +  P     
Sbjct: 95   NKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAEREAESQVNPNSEQG 154

Query: 577  ----------------NIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLG 708
                            ++   P  G V F S + GW F ++ FA++Y  K   + E    
Sbjct: 155  EQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGIRKEV--- 211

Query: 709  PAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIM 888
                      ++K LWGD Y +    K  K   +   K L   F QLIL+ I+ ++DA++
Sbjct: 212  ----------LLKTLWGDYYINTKAKKIMKVDQAKGKKPL---FVQLILENIWSLYDAVL 258

Query: 889  NFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTA 1065
               KE+T K++  L +K+ + E +  + K  + A+  +WLP   A+L M+   LPSP+  
Sbjct: 259  KKDKEKTDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPSPLDI 318

Query: 1066 QKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKGPLMMYISKMVPTSDK 1194
               R E L+  G       PP+ +A       C  +   P+++++SKM     K
Sbjct: 319  TAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAK 372



 Score =  104 bits (259), Expect = 5e-22
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
 Frame = +1

Query: 2128 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 2304
            GQ+I T +  C YA  +  Q RLM  +Y  +I     V+G +Y VL+++ G V +E    
Sbjct: 917  GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKE 975

Query: 2305 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 2448
            GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+P DPF            
Sbjct: 976  GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1035

Query: 2449 ----DNTSRPSQVVAETRKRKGL 2505
                D+ ++  + +   RKRKGL
Sbjct: 1036 GEKADSENQARKYMNAVRKRKGL 1058


>ref|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
            isoform 1 [Bos taurus].
          Length = 1129

 Score =  181 bits (459), Expect = 3e-45
 Identities = 122/425 (28%), Positives = 201/425 (47%), Gaps = 96/425 (22%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            E P  DE  +  ++  P  P           S++  F AF RVFSG+   G ++ ++GP 
Sbjct: 478  EEPKGDEQGVESETPKPVSP---------EGSEQESFIAFARVFSGVARKGKRIFVLGPK 528

Query: 1273 YTP------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVPCGNIVGLVGV 1398
            Y+P               EDL   P      ++   L+MGR +E +E+VP GN++G+ G+
Sbjct: 529  YSPLEFLQQVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGL 588

Query: 1399 DQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQ 1578
              F++K+ T+ T         + F  +P+VRVA+E K+P+++P+LV+G+K L ++DP VQ
Sbjct: 589  QDFVLKSATLCTSPSCPPFIPLNFEATPIVRVAIEPKHPSEMPQLVKGMKLLNQADPCVQ 648

Query: 1579 CIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE---------- 1728
              I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++          
Sbjct: 649  VFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIPFRETITKPPKVDMVNEE 708

Query: 1729 --------------------------ESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDK 1830
                                      +SN L    +PNK   L ++A P P+ + + +++
Sbjct: 709  IGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEE 768

Query: 1831 GE---------VSARQELKQRARYLAEKYEWDVAEAR-----------------KIWCFG 1932
                        S+  E K   + + +K +  + E +                 +IW FG
Sbjct: 769  SSDLIRSMEQLTSSLNEGKNNPQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFG 828

Query: 1933 PDGTGPNILTD----------------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENM 2064
            P   GPNIL +                 +K      ++ +S+V+GFQ AT  G +CEE +
Sbjct: 829  PRKCGPNILVNKSEDFHNSVWTGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPL 888

Query: 2065 RGVRF 2079
             GV F
Sbjct: 889  MGVCF 893



 Score =  180 bits (457), Expect = 6e-45
 Identities = 132/435 (30%), Positives = 196/435 (45%), Gaps = 44/435 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y   + +            +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHYAEGDKE------------YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY---- 549
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 550  ---------GEGESGPM-------------------GNIMIDPVLGTVGFGSGLHGWAFT 645
                      E +  P                     ++   P  G V F S + GW F 
Sbjct: 185  VLEERAEREAESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA++Y  K                + E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFAKIYSQKTGI-------------RKEVLLKTLWGDYYINTKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL+ I+ ++DA++   KE+T K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILENIWSLYDAVLKKDKEKTDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E L+  G       PP+ +A       C  +   
Sbjct: 349  LPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKMVPTSDK 1194
            P+++++SKM     K
Sbjct: 409  PVIIFVSKMFAVDAK 423



 Score =  104 bits (259), Expect = 5e-22
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
 Frame = +1

Query: 2128 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 2304
            GQ+I T +  C YA  +  Q RLM  +Y  +I     V+G +Y VL+++ G V +E    
Sbjct: 968  GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKE 1026

Query: 2305 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 2448
            GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+P DPF            
Sbjct: 1027 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1086

Query: 2449 ----DNTSRPSQVVAETRKRKGL 2505
                D+ ++  + +   RKRKGL
Sbjct: 1087 GEKADSENQARKYMNAVRKRKGL 1109


>ref|XP_606001.5| PREDICTED: elongation factor Tu GTP binding domain containing 1,
            partial [Bos taurus].
          Length = 1107

 Score =  180 bits (457), Expect = 6e-45
 Identities = 132/435 (30%), Positives = 196/435 (45%), Gaps = 44/435 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y   + +            +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHYAEGDKE------------YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY---- 549
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 550  ---------GEGESGPM-------------------GNIMIDPVLGTVGFGSGLHGWAFT 645
                      E +  P                     ++   P  G V F S + GW F 
Sbjct: 185  VLEERAEREAESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA++Y  K                + E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFAKIYSQKTGI-------------RKEVLLKTLWGDYYINTKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL+ I+ ++DA++   KE+T K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILENIWSLYDAVLKKDKEKTDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E L+  G       PP+ +A       C  +   
Sbjct: 349  LPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKMVPTSDK 1194
            P+++++SKM     K
Sbjct: 409  PVIIFVSKMFAVDAK 423



 Score =  176 bits (445), Expect = 1e-43
 Identities = 122/435 (28%), Positives = 200/435 (45%), Gaps = 106/435 (24%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            E P  DE  +  ++  P  P           S++  F AF RVFSG+   G ++ ++GP 
Sbjct: 478  EEPKGDEQGVESETPKPVSP---------EGSEQESFIAFARVFSGVARKGKRIFVLGPK 528

Query: 1273 YTP----------------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVP 1368
            Y+P                         EDL   P      ++   L+MGR +E +E+VP
Sbjct: 529  YSPLEFLQQAXXXXXXXXXXXXXXXXXLEDLPPVPHMACCTLENLYLLMGRELEDLEEVP 588

Query: 1369 CGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLK 1548
             GN++G V +  F++K+ T+ T         + F  +P+VRVA+E K+P+++P+LV+G+K
Sbjct: 589  PGNVLGRVALQDFVLKSATLCTSPSCPPFIPLNFEATPIVRVAIEPKHPSEMPQLVKGMK 648

Query: 1549 RLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE 1728
             L ++DP VQ  I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++
Sbjct: 649  LLNQADPCVQVFIQETGEHVLVTAGEVHLQRCLDDLKERFAKIEISVSEPIIPFRETITK 708

Query: 1729 ------------------------------------ESNVLCLSKSPNKHNRLYMKARPF 1800
                                                +SN L    +PNK   L ++A P 
Sbjct: 709  PPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSNGLITMMTPNKLATLSVRALPL 768

Query: 1801 PDGLAEDIDKGE---------VSARQELKQRARYLAEKYEWDVAEAR------------- 1914
            P+ + + +++            S+  E K   + + +K +  + E +             
Sbjct: 769  PEEVTQILEESSDLIRSMEQLTSSLNEGKNNPQMIHQKTQEKIWEFKGKLEHHLTGRKWR 828

Query: 1915 ----KIWCFGPDGTGPNILTD----------------ITKGVQYLNEIKDSVVAGFQWAT 2034
                +IW FGP   GPNIL +                 +K      ++ +S+V+GFQ AT
Sbjct: 829  NTVDQIWSFGPRKCGPNILVNKSEDFHNSVWTGLDGKASKEASRYRDLGNSIVSGFQLAT 888

Query: 2035 KEGALCEENMRGVRF 2079
              G +CEE + GV F
Sbjct: 889  LSGPMCEEPLMGVCF 903



 Score = 90.5 bits (223), Expect = 8e-18
 Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
 Frame = +1

Query: 2128 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 2304
            GQ+I T +  C YA  +  Q RLM  +Y  +I     V+G +Y VL+++ G V +E    
Sbjct: 978  GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKE 1036

Query: 2305 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQI 2430
            GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW++
Sbjct: 1037 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEV 1078


>ref|NP_001095579.1| ribosome-releasing factor 2, mitochondrial [Bos taurus].
          Length = 777

 Score =  105 bits (261), Expect = 3e-22
 Identities = 191/861 (22%), Positives = 321/861 (37%), Gaps = 44/861 (5%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
            A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68   AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193  AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
            A   +++                G+ INLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127  AVTFDWK----------------GYRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373  XXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVN------- 531
                QT TV RQA   ++  +  +NKMD+              +F   VE++        
Sbjct: 171  GVEAQTLTVWRQADKHKVPRICFLNKMDKIG-----------ASFNYAVESIREKLKAKP 219

Query: 532  -VIISTYGEGES--GPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQ 702
             ++    GEG++  G +  +  + +L       G       L + ++  + K   +    
Sbjct: 220  LLLQLPIGEGKAFKGVVDVVRTEKLLWNPNSDDGKDFERKPLLEMSDPKLLKETTEARNA 279

Query: 703  LGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDA 882
            L      ++V D+      D + D   G+FS++                 L P  K+  A
Sbjct: 280  L-----IEQVADL-----DDEFADLVLGEFSEN---------------FDLLPAEKLQTA 314

Query: 883  IMNFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVT 1062
            I      +TA     + +   S  K+K  +PLL A               IT++LPSP  
Sbjct: 315  IHRVTLAQTA-----VPVLCGSALKNKGVQPLLDA---------------ITMYLPSP-E 353

Query: 1063 AQKYRCELLYEGPPDDEAAMGIKSCDPK--GPLMMYISKMVPTSDKGRFYAFGRVFSGLV 1236
             + Y     Y+G   D  A+  K    K  GPL+                 F R++SG++
Sbjct: 354  ERNYEFLQWYKG---DLCALAFKVLHDKQRGPLV-----------------FMRIYSGML 393

Query: 1237 STGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLV- 1413
                 +  +  N T         + + R +L        I  +  GNI   VG+      
Sbjct: 394  KPQTAIHNINGNCT---------ERVSRLLLPFADQHIEIPLLTAGNIALTVGLKHTATG 444

Query: 1414 ------------------KTGTITTFEHAHNMRVMKFSV---SPVVRVAVEAKNPADLPK 1530
                              + G     E+    R++   V    PV    +E  + A  P 
Sbjct: 445  DTIVSSRSSALAASRRAKREGEKKQKENNEAERLLLAGVEIPEPVFFCTIEPPSMAKQPD 504

Query: 1531 LVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 1707
            L   LK L + DP ++  ++ +SG+ ++ G GELH+EI    ++ ++  +        V+
Sbjct: 505  LDHALKCLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYG-LETYLGPLQVA 563

Query: 1708 YRETVSEE---SNVLCLSKSPNKH-NRLYMKARPFPDGLAEDIDKGEVSARQELKQRARY 1875
            YRE +      ++ L  +    +H   + ++A+P        + +   S   +L Q +R 
Sbjct: 564  YREAILNSIRATDTLDRTLGDKRHLVTVELEAKPVETSSLLPVIEYAASVAGDLSQASRE 623

Query: 1876 LAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCE 2055
              E                                            G   A  +G L  
Sbjct: 624  AFEN-------------------------------------------GVHSACLQGPLLG 640

Query: 2056 ENMRGVRFDVHDVTLHADAIHRGGGQIIPTA--RRCLYASVLTAQPRLMEPIYLVEIQCP 2229
              ++ V      VTLH+  IH G    + +A   RCL  ++  A  +++EP+  +E+   
Sbjct: 641  SPVQDVA-----VTLHSLVIHPGTSTTMISACVSRCLQKALKKADKQILEPLMNLEVTVS 695

Query: 2230 EQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQC 2409
             + +  +   L ++RG++ E          VV  Y+P+ E  G++  LR+ T G A    
Sbjct: 696  REYLSPVLADLAQRRGNIQEIQSRQDNK--VVIGYVPLAEIMGYSTVLRTLTSGSATFAL 753

Query: 2410 VFDHWQILPGDPFDNTSRPSQ 2472
               ++Q +  +P D ++  SQ
Sbjct: 754  ELSNYQAM--NPQDQSTLLSQ 772


>ref|NP_001193078.1| elongation factor G, mitochondrial [Bos taurus].
          Length = 753

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 116/491 (23%), Positives = 194/491 (39%), Gaps = 6/491 (1%)
 Frame = +1

Query: 940  LDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAA 1119
            L S  K+K  +PLL AV+                +LP+P   Q Y      +     +  
Sbjct: 300  LGSALKNKGVQPLLDAVLE---------------YLPNPSEVQNYAILNQDDSQEKTKIL 344

Query: 1120 MGIKSCDPKGPLMMYISKMVPTSDKGRF--YAFGRVFSGLVSTGLKVRIMGPNYTPGKKE 1293
            M  K  D   P +    K+    + GRF    + R + G +  G  +     N    KK 
Sbjct: 345  MNPKR-DSSHPFVGLAFKL----EAGRFGQLTYVRNYQGELKKGDNIY----NTRTRKKV 395

Query: 1294 DLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFS 1473
                  +QR + M    +E +E+V  G+I  L G+D       +  TF +  N  +   S
Sbjct: 396  R-----VQRLVRMHADMMEDVEEVFAGDICALFGID-----CASGDTFTNKDNSGLSMES 445

Query: 1474 V---SPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEI 1641
            +    PV+ +A++  N  DL K  +G+ R  + DP  +   + +S E I++G GELHLEI
Sbjct: 446  IHVPDPVISIAMKPSNKNDLEKFSKGIGRFTREDPTFKVHFDTDSKETIVSGMGELHLEI 505

Query: 1642 CLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAED 1821
              + +E ++ C P     P V++RET++         K  +     + K      G+ E 
Sbjct: 506  YAQRMEREYGC-PCITGKPKVAFRETITAPVPFDFTHKKQSGGAGQFGKV----IGVLEP 560

Query: 1822 IDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIK 2001
            +D                                   P+       +D T G     +  
Sbjct: 561  LD-----------------------------------PENYTKLEFSDETFGSNVPKQFV 585

Query: 2002 DSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTA 2181
             +V  GF  A ++G L    + G+RF + D   H   +       I      L  ++   
Sbjct: 586  PAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHH--MVDSNEISFIRAGEGALKQALANT 643

Query: 2182 QPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGF 2361
               ++EPI  VE+  P +  G +   +NR+ G +  +  +     F + A +P+N  FG+
Sbjct: 644  ALCILEPIMSVEVIAPNEFQGPVIAGINRRHGVITGQDGI--EDYFTLYADVPLNNMFGY 701

Query: 2362 TADLRSNTGGQ 2394
            + +LRS T G+
Sbjct: 702  STELRSCTEGK 712



 Score = 60.5 bits (145), Expect = 9e-09
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAP-----ARAGETRXTDTRKDEQERRTTXKXTA 195
           RN   +AH D GK T T+      G  A       + G     D+ + E++R  T +  A
Sbjct: 50  RNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAA 109

Query: 196 XXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 375
               ++    D+N            IN+ID+PGHVDF+ EV  ALRV DGA+        
Sbjct: 110 TYTMWK----DVN------------INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGG 153

Query: 376 XXXQTETVLRQAIAERIKPVLMMNKMDR 459
              QT TV RQ     +  +  +NK+DR
Sbjct: 154 VQCQTMTVNRQMRRYNVPFLTFINKLDR 181


>ref|XP_002685002.1| PREDICTED: G elongation factor, mitochondrial 1 [Bos taurus].
          Length = 753

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 116/491 (23%), Positives = 194/491 (39%), Gaps = 6/491 (1%)
 Frame = +1

Query: 940  LDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAA 1119
            L S  K+K  +PLL AV+                +LP+P   Q Y      +     +  
Sbjct: 300  LGSALKNKGVQPLLDAVLE---------------YLPNPSEVQNYAILNQDDSQEKTKIL 344

Query: 1120 MGIKSCDPKGPLMMYISKMVPTSDKGRF--YAFGRVFSGLVSTGLKVRIMGPNYTPGKKE 1293
            M  K  D   P +    K+    + GRF    + R + G +  G  +     N    KK 
Sbjct: 345  MNPKR-DSSHPFVGLAFKL----EAGRFGQLTYVRNYQGELKKGDNIY----NTRTRKKV 395

Query: 1294 DLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFS 1473
                  +QR + M    +E +E+V  G+I  L G+D       +  TF +  N  +   S
Sbjct: 396  R-----VQRLVRMHADMMEDVEEVFAGDICALFGID-----CASGDTFTNKDNSGLSMES 445

Query: 1474 V---SPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEI 1641
            +    PV+ +A++  N  DL K  +G+ R  + DP  +   + +S E I++G GELHLEI
Sbjct: 446  IHVPDPVISIAMKPSNKNDLEKFSKGIGRFTREDPTFKVHFDTDSKETIVSGMGELHLEI 505

Query: 1642 CLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAED 1821
              + +E ++ C P     P V++RET++         K  +     + K      G+ E 
Sbjct: 506  YAQRMEREYGC-PCITGKPKVAFRETITAPVPFDFTHKKQSGGAGQFGKV----IGVLEP 560

Query: 1822 IDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIK 2001
            +D                                   P+       +D T G     +  
Sbjct: 561  LD-----------------------------------PENYTKLEFSDETFGSNVPKQFV 585

Query: 2002 DSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTA 2181
             +V  GF  A ++G L    + G+RF + D   H   +       I      L  ++   
Sbjct: 586  PAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHH--MVDSNEISFIRAGEGALKQALANT 643

Query: 2182 QPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGF 2361
               ++EPI  VE+  P +  G +   +NR+ G +  +  +     F + A +P+N  FG+
Sbjct: 644  ALCILEPIMSVEVIAPNEFQGPVIAGINRRHGVITGQDGI--EDYFTLYADVPLNNMFGY 701

Query: 2362 TADLRSNTGGQ 2394
            + +LRS T G+
Sbjct: 702  STELRSCTEGK 712



 Score = 60.5 bits (145), Expect = 9e-09
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAP-----ARAGETRXTDTRKDEQERRTTXKXTA 195
           RN   +AH D GK T T+      G  A       + G     D+ + E++R  T +  A
Sbjct: 50  RNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAA 109

Query: 196 XXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 375
               ++    D+N            IN+ID+PGHVDF+ EV  ALRV DGA+        
Sbjct: 110 TYTMWK----DVN------------INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGG 153

Query: 376 XXXQTETVLRQAIAERIKPVLMMNKMDR 459
              QT TV RQ     +  +  +NK+DR
Sbjct: 154 VQCQTMTVNRQMRRYNVPFLTFINKLDR 181


>ref|NP_001095537.1| GTP-binding protein GUF1 homolog [Bos taurus].
          Length = 669

 Score = 54.7 bits (130), Expect = 5e-07
 Identities = 41/142 (28%), Positives = 59/142 (41%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXXXNY 210
           RN    AH D GK+T  D      G     +  + +  D  + E+ER  T K       Y
Sbjct: 69  RNFSIIAHVDHGKSTLADRLLELTGAIDKTKNNK-QVLDKLQVERERGITVKAQTASLFY 127

Query: 211 ELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT 390
                         +G  +L+NLID+PGHVDFS EV+ +L    G L           QT
Sbjct: 128 NY------------EGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQT 175

Query: 391 ETVLRQAIAERIKPVLMMNKMD 456
                 A   ++  + ++NK+D
Sbjct: 176 VANFFLAFEAQLSIIPVINKID 197


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 119,435,348
Number of extensions: 3560533
Number of successful extensions: 16030
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 15895
Number of HSP's successfully gapped: 26
Length of query: 995
Length of database: 17,681,374
Length adjustment: 112
Effective length of query: 883
Effective length of database: 13,975,518
Effective search space: 12340382394
Effective search space used: 12340382394
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000953
         (2985 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852913.1| PREDICTED: similar to Elongation factor 2 (EF-2...  1033   0.0  
Alignment   gi|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2...   689   0.0  
Alignment   gi|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ...   582   e-166
Alignment   gi|XP_853666.1| PREDICTED: similar to Elongation factor 2 (EF-2...   276   1e-73
Alignment   gi|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP ...   182   2e-45
Alignment   gi|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP ...   171   4e-42
Alignment   gi|XP_854832.1| PREDICTED: similar to Elongation factor 2 (EF-2...   160   2e-39
Alignment   gi|XP_534320.2| PREDICTED: similar to G elongation factor, mito...   104   4e-22
Alignment   gi|XP_535276.2| PREDICTED: similar to mitochondrial elongation ...   101   4e-21
Alignment   gi|XP_855380.1| PREDICTED: similar to Elongation factor 2 (EF-2...    83   2e-18

>ref|XP_852913.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
          Length = 569

 Score = 1033 bits (2671), Expect = 0.0
 Identities = 519/580 (89%), Positives = 531/580 (91%)
 Frame = +1

Query: 664  MYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFC 843
            MYVAKFA KGEGQLGPAE  KKVEDMMK LWGD YFDPANGKFSKSATSPDGKKL RTFC
Sbjct: 1    MYVAKFATKGEGQLGPAEWTKKVEDMMKNLWGDWYFDPANGKFSKSATSPDGKKLRRTFC 60

Query: 844  QLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDAL 1023
            QLILDPIFK FDAIMNFKKEETAKLIEKLDIKLDS  KDKEGKPLLKAVMRRWLPAGDAL
Sbjct: 61   QLILDPIFKAFDAIMNFKKEETAKLIEKLDIKLDSGGKDKEGKPLLKAVMRRWLPAGDAL 120

Query: 1024 LQMITIHLPSPVTAQKYRCELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRF 1203
            LQMITIHLPSPVTAQKYRCELLYEGPPD+EAAMGIKSCDPKGPLMMYI KMVPTSDKG+F
Sbjct: 121  LQMITIHLPSPVTAQKYRCELLYEGPPDNEAAMGIKSCDPKGPLMMYIPKMVPTSDKGQF 180

Query: 1204 YAFGRVFSGLVSTGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIV 1383
            YAFGRVFS LVSTGLKVRIM PNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDV CGNIV
Sbjct: 181  YAFGRVFSELVSTGLKVRIMVPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVLCGNIV 240

Query: 1384 GLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKS 1563
             LVGVDQFLVKTGTIT FEHAHNM+VMKFSVSP+VRVAVEAK+PADLPKLVEGLKRLAKS
Sbjct: 241  DLVGVDQFLVKTGTITIFEHAHNMKVMKFSVSPIVRVAVEAKDPADLPKLVEGLKRLAKS 300

Query: 1564 DPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVL 1743
            DPMVQCIIEESGEHII GAGELHLEICLKDLE+DHACIPIKKSDPVV Y ETV  +   L
Sbjct: 301  DPMVQCIIEESGEHIIEGAGELHLEICLKDLEKDHACIPIKKSDPVVPYHETVIPQQAQL 360

Query: 1744 CLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIW 1923
             +            +ARPFPDGLAEDIDKGEVSA QELKQ+ARYLAEKYEWDVAEARKIW
Sbjct: 361  GVH-----------EARPFPDGLAEDIDKGEVSAHQELKQQARYLAEKYEWDVAEARKIW 409

Query: 1924 CFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLH 2103
            CFGPDGTG NILTDITKGVQYLNEIK+SVVAGFQWATKEGALCEEN+ GVRF  HDVTLH
Sbjct: 410  CFGPDGTGTNILTDITKGVQYLNEIKNSVVAGFQWATKEGALCEENISGVRFHEHDVTLH 469

Query: 2104 ADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHV 2283
             DAIHRGGGQIIP AR CLY SVLTAQP LMEPIYLVEIQCPEQVVGGIY VLNRK GHV
Sbjct: 470  VDAIHRGGGQIIPIARHCLYTSVLTAQPWLMEPIYLVEIQCPEQVVGGIYDVLNRKLGHV 529

Query: 2284 FEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 2403
            FEESQVAGTPMFVVKAYLPVNESFGFTADLRSNT GQAFP
Sbjct: 530  FEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTSGQAFP 569


>ref|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
          Length = 698

 Score =  689 bits (1777), Expect = 0.0
 Identities = 356/436 (81%), Positives = 366/436 (83%)
 Frame = +1

Query: 1    RXXRDKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTT 180
            R   DKKA  RN    AH D GK+T TD+   KAG  A ARAGETR TDTRKDEQER  T
Sbjct: 10   RAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCIT 69

Query: 181  XKXTAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 360
             K TA    YELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGAL   
Sbjct: 70   IKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 129

Query: 361  XXXXXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVII 540
                    QTETVLRQAIAERIKPVLMMNKMDRA           YQTFQRIVENVNVII
Sbjct: 130  DCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVII 189

Query: 541  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 720
            STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER
Sbjct: 190  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 249

Query: 721  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 900
            AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK
Sbjct: 250  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 309

Query: 901  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 1080
            EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC
Sbjct: 310  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 369

Query: 1081 ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 1260
            ELLYEGPPDDEAAMGIKSCDPKGPLMMYI +MVPTSDKGRFY    V S   +   +  +
Sbjct: 370  ELLYEGPPDDEAAMGIKSCDPKGPLMMYIYRMVPTSDKGRFYKSDPVVSYRETVSEESNV 429

Query: 1261 MGPNYTPGKKEDLYLK 1308
            +  + +P K   LY+K
Sbjct: 430  LCLSKSPNKHNRLYMK 445



 Score =  590 bits (1520), Expect = e-168
 Identities = 286/287 (99%), Positives = 287/287 (100%)
 Frame = +1

Query: 1687 KSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQR 1866
            KSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQR
Sbjct: 412  KSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQR 471

Query: 1867 ARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGA 2046
            ARYLAEKYEWDVAEARKIWCFGPDGTGPN+LTDITKGVQYLNEIKDSVVAGFQWATKEGA
Sbjct: 472  ARYLAEKYEWDVAEARKIWCFGPDGTGPNVLTDITKGVQYLNEIKDSVVAGFQWATKEGA 531

Query: 2047 LCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQC 2226
            LCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQC
Sbjct: 532  LCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQC 591

Query: 2227 PEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQ 2406
            PEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQ
Sbjct: 592  PEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQ 651

Query: 2407 CVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 2547
            CVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL
Sbjct: 652  CVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 698


>ref|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein
            component (U5 snRNP-specific protein, 116 kDa) (U5-116
            kDa) (Elongation factor Tu GTP binding domain protein 2)
            [Canis familiaris].
          Length = 972

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 124  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 183

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 184  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 232

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 233  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 292

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 293  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 342

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 343  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 392

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 393  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 452

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 453  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 512

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 513  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 572

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 573  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 632

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 633  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 692

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 693  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 752

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 753  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 812

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 813  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 872

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 873  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 932

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 933  FMIKTRRRKGLSEDV-SISKFFD 954


>ref|XP_853666.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
          Length = 232

 Score =  276 bits (705), Expect = 1e-73
 Identities = 166/310 (53%), Positives = 183/310 (59%)
 Frame = +1

Query: 385  QTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTYGEGES 564
            QTE VL+QAIAE IKP+LMMNKMD A            QTFQ I+E+             
Sbjct: 13   QTEMVLQQAIAEHIKPMLMMNKMDLALVELQLEPEKLCQTFQHIMED------------- 59

Query: 565  GPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMM 744
                                         QFAE+YVAKFAAKGEGQLGP E AKKV++MM
Sbjct: 60   -----------------------------QFAEIYVAKFAAKGEGQLGPTELAKKVKNMM 90

Query: 745  KKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEETAKLIE 924
            KKL  D+YFDP N KFSKS+TS DGKK+P TFC+LILDP+FKVFDAI+NFKKE      E
Sbjct: 91   KKLQDDQYFDPVNSKFSKSSTSSDGKKVPSTFCRLILDPVFKVFDAILNFKKE------E 144

Query: 925  KLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPP 1104
            KLDIKLDSEDKDKEGKP  KAVM   LPA  ALLQMITIHL  P+TAQKY CELLY    
Sbjct: 145  KLDIKLDSEDKDKEGKPFSKAVMYHRLPAKVALLQMITIHLAFPITAQKYCCELLY---- 200

Query: 1105 DDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPNYTPG 1284
                                                  VF G+VSTGLKV+I+G NYT G
Sbjct: 201  --------------------------------------VFLGMVSTGLKVQIVGSNYTLG 222

Query: 1285 KKEDLYLKPI 1314
            KKEDLYLKPI
Sbjct: 223  KKEDLYLKPI 232


>ref|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP binding domain
            containing 1 isoform 6 [Canis familiaris].
          Length = 1128

 Score =  182 bits (461), Expect = 2e-45
 Identities = 135/435 (31%), Positives = 197/435 (45%), Gaps = 44/435 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y            +KD   +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHY------------AKDNEDYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY---- 549
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKLDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 550  ---------GEGESGPM-------------------GNIMIDPVLGTVGFGSGLHGWAFT 645
                      E +  P                     ++   P  G V F S L GW F 
Sbjct: 185  VLEERAERETESQVNPSSEPGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSALDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA +Y  K                K E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  VEHFATIYSQKIGI-------------KKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL+ I+ ++DA++   +E+  K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILENIWSLYDAVLKKDREKIDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA--AMGIK-SCDPKG 1149
            LP   A+L M+   LPSP+     R E L+  G       PP+ +A  A  +K   +   
Sbjct: 349  LPISHAVLAMVCQKLPSPLDMTAERVERLMCTGSQTFDSLPPETQALKAAFLKCGSEDTA 408

Query: 1150 PLMMYISKMVPTSDK 1194
            P+++++SKM     K
Sbjct: 409  PVIIFVSKMFAVDAK 423



 Score =  171 bits (433), Expect = 4e-42
 Identities = 112/388 (28%), Positives = 185/388 (47%), Gaps = 95/388 (24%)
 Frame = +1

Query: 1201 FYAFGRVFSGLVSTGLKVRIMGPNYTP------------GKKEDLYLKP------IQRTI 1326
            F AF RVFSG+   G K+ ++GP Y+P               EDL   P      ++   
Sbjct: 505  FIAFARVFSGVARRGKKIFVLGPKYSPVEFLQRVPLGFSAPLEDLPPVPHMACCTLENLY 564

Query: 1327 LMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEA 1506
            L+MGR +E +E+VP GN++G+ G+   ++K+ T+ +         + F  +P+VRVAVE 
Sbjct: 565  LLMGRELEDLEEVPPGNVLGIGGLQDLVLKSATLCSVPSCPPFIPLNFEATPIVRVAVEP 624

Query: 1507 KNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIK 1686
            K+P+++P+LV G+K L ++DP VQ +I+E+GEH++  AGE+HL+ CL DL+E  A I I 
Sbjct: 625  KHPSEMPQLVRGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFARIQIS 684

Query: 1687 KSDPVVSYRETVSE------------------------------------ESNVLCLSKS 1758
             S+P++ +RET+++                                    +S+ L    +
Sbjct: 685  VSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLITITT 744

Query: 1759 PNKHNRLYMKARPFPDGLAEDIDKGE--VSARQEL---------KQRARYLAEKYEWDVA 1905
            PNK   L ++A P P+ + + +++    + + ++L          Q      ++  W+  
Sbjct: 745  PNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGRHNQMMHQKTQEKMWEFK 804

Query: 1906 --------------EARKIWCFGPDGTGPNILTD----------------ITKGVQYLNE 1995
                             +IW FGP   GPNIL +                 +K      +
Sbjct: 805  GRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPAIKASKETSRYRD 864

Query: 1996 IKDSVVAGFQWATKEGALCEENMRGVRF 2079
              +S+V+GFQ AT  G +CEE + GV F
Sbjct: 865  FGNSIVSGFQLATLSGPMCEEPLMGVCF 892



 Score =  103 bits (257), Expect = 1e-21
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
 Frame = +1

Query: 2128 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 2304
            GQ+I T +  C YA  +  Q RLM  +Y  +I     V+G +Y VL+++ G V +E    
Sbjct: 967  GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKE 1025

Query: 2305 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 2448
            GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+P DPF            
Sbjct: 1026 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1085

Query: 2449 ----DNTSRPSQVVAETRKRKGL 2505
                D+ ++  + +   RKRKGL
Sbjct: 1086 GEKADSENQARKYMNAVRKRKGL 1108


>ref|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP binding domain
            containing 1 isoform 5 [Canis familiaris].
          Length = 1077

 Score =  171 bits (433), Expect = 4e-42
 Identities = 112/388 (28%), Positives = 185/388 (47%), Gaps = 95/388 (24%)
 Frame = +1

Query: 1201 FYAFGRVFSGLVSTGLKVRIMGPNYTP------------GKKEDLYLKP------IQRTI 1326
            F AF RVFSG+   G K+ ++GP Y+P               EDL   P      ++   
Sbjct: 454  FIAFARVFSGVARRGKKIFVLGPKYSPVEFLQRVPLGFSAPLEDLPPVPHMACCTLENLY 513

Query: 1327 LMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEA 1506
            L+MGR +E +E+VP GN++G+ G+   ++K+ T+ +         + F  +P+VRVAVE 
Sbjct: 514  LLMGRELEDLEEVPPGNVLGIGGLQDLVLKSATLCSVPSCPPFIPLNFEATPIVRVAVEP 573

Query: 1507 KNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIK 1686
            K+P+++P+LV G+K L ++DP VQ +I+E+GEH++  AGE+HL+ CL DL+E  A I I 
Sbjct: 574  KHPSEMPQLVRGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFARIQIS 633

Query: 1687 KSDPVVSYRETVSE------------------------------------ESNVLCLSKS 1758
             S+P++ +RET+++                                    +S+ L    +
Sbjct: 634  VSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQTKEDQSKIPEGIQVDSDGLITITT 693

Query: 1759 PNKHNRLYMKARPFPDGLAEDIDKGE--VSARQEL---------KQRARYLAEKYEWDVA 1905
            PNK   L ++A P P+ + + +++    + + ++L          Q      ++  W+  
Sbjct: 694  PNKLATLSVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGRHNQMMHQKTQEKMWEFK 753

Query: 1906 --------------EARKIWCFGPDGTGPNILTD----------------ITKGVQYLNE 1995
                             +IW FGP   GPNIL +                 +K      +
Sbjct: 754  GRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWTGPAIKASKETSRYRD 813

Query: 1996 IKDSVVAGFQWATKEGALCEENMRGVRF 2079
              +S+V+GFQ AT  G +CEE + GV F
Sbjct: 814  FGNSIVSGFQLATLSGPMCEEPLMGVCF 841



 Score =  149 bits (376), Expect = 2e-35
 Identities = 109/358 (30%), Positives = 164/358 (45%), Gaps = 44/358 (12%)
 Frame = +1

Query: 253  DGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKP 432
            D   +LINLIDSPGHVDFSSEV+ A+R+ DG +           QT+ VLRQA  E I+P
Sbjct: 31   DNEDYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRP 90

Query: 433  VLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY-------------GEGESGPM 573
            VL++NK+DR            Y   + I+E +N +  T               E +  P 
Sbjct: 91   VLVINKLDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPS 150

Query: 574  -------------------GNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGE 696
                                ++   P  G V F S L GW F ++ FA +Y  K      
Sbjct: 151  SEPGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSALDGWGFGVEHFATIYSQKIGI--- 207

Query: 697  GQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVF 876
                      K E ++K LWGD Y +    K  K   +   K L   F QLIL+ I+ ++
Sbjct: 208  ----------KKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPL---FVQLILENIWSLY 254

Query: 877  DAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPS 1053
            DA++   +E+  K++  L +K+ + E +  + K  + A+  +WLP   A+L M+   LPS
Sbjct: 255  DAVLKKDREKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPS 314

Query: 1054 PVTAQKYRCE-LLYEG-------PPDDEA--AMGIK-SCDPKGPLMMYISKMVPTSDK 1194
            P+     R E L+  G       PP+ +A  A  +K   +   P+++++SKM     K
Sbjct: 315  PLDMTAERVERLMCTGSQTFDSLPPETQALKAAFLKCGSEDTAPVIIFVSKMFAVDAK 372



 Score =  103 bits (257), Expect = 1e-21
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
 Frame = +1

Query: 2128 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 2304
            GQ+I T +  C YA  +  Q RLM  +Y  +I     V+G +Y VL+++ G V +E    
Sbjct: 916  GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKE 974

Query: 2305 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 2448
            GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+P DPF            
Sbjct: 975  GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1034

Query: 2449 ----DNTSRPSQVVAETRKRKGL 2505
                D+ ++  + +   RKRKGL
Sbjct: 1035 GEKADSENQARKYMNAVRKRKGL 1057


>ref|XP_854832.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
          Length = 147

 Score =  160 bits (406), Expect(2) = 2e-39
 Identities = 78/105 (74%), Positives = 88/105 (83%)
 Frame = +1

Query: 1102 PDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPNYTP 1281
            P    ++GI SCDPKGP MM+ SKMVPTSDKG+FY FG VFSGL+ TGLKVRIMG NYTP
Sbjct: 42   PWQRGSLGIISCDPKGPHMMHTSKMVPTSDKGQFYTFGHVFSGLMLTGLKVRIMGSNYTP 101

Query: 1282 GKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVK 1416
             KK DLYL+ IQR IL+ GRYVEPI+DVPCGN+VGL GVDQFLV+
Sbjct: 102  RKKVDLYLQAIQRMILVTGRYVEPIKDVPCGNMVGLGGVDQFLVE 146



 Score = 22.7 bits (47), Expect(2) = 2e-39
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 999  LAARRGCAATDDHH 1040
            L   +GC+A +DHH
Sbjct: 15   LMMNKGCSAANDHH 28


>ref|XP_534320.2| PREDICTED: similar to G elongation factor, mitochondrial 1 [Canis
            familiaris].
          Length = 771

 Score =  104 bits (260), Expect = 4e-22
 Identities = 117/491 (23%), Positives = 197/491 (40%), Gaps = 6/491 (1%)
 Frame = +1

Query: 940  LDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAA 1119
            L S  K+K  +PLL AV+                +LP+P   Q Y      +   +    
Sbjct: 317  LGSALKNKGVQPLLDAVLE---------------YLPNPSEVQNYAILHQEDDSKEQNKI 361

Query: 1120 MGIKSCDPKGPLMMYISKMVPTSDKGRF--YAFGRVFSGLVSTGLKVRIMGPNYTPGKKE 1293
            +     +   P +    K+    + GRF    + R + G +  G  +     N   GKK 
Sbjct: 362  LMNSERNSSHPFVGLAFKL----EAGRFGQLTYVRNYQGELKKGDTIY----NTRTGKKV 413

Query: 1294 DLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFS 1473
                  +QR + M    +E +E+V  G+I  L G+D       +  TF + +N  +   S
Sbjct: 414  R-----VQRLVRMHADMMEDVEEVYAGDICALFGID-----CASGDTFTNRNNSGLSMES 463

Query: 1474 V---SPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEI 1641
            +    PV+ +A++  N  DL K  +G+ R  + DP  +   + ES E I++G GELHLEI
Sbjct: 464  IHVPDPVISIAMKPSNKNDLEKFSKGIGRFTREDPTFKVHFDNESKETIVSGMGELHLEI 523

Query: 1642 CLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAED 1821
              + +E ++ C P     P V++RET++         K  +     + K      G+ E 
Sbjct: 524  YAQRMEREYGC-PCVTGKPKVAFRETITAPVPFEFTHKKQSGGAGQFGKV----IGVLEP 578

Query: 1822 IDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIK 2001
            +D                                   P+       +D T G     +  
Sbjct: 579  LD-----------------------------------PENYTKLEFSDETFGANVPKQFV 603

Query: 2002 DSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTA 2181
             +V  GF  A ++G L    + G+RF + D   H   +       I      L  ++  A
Sbjct: 604  PAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHH--MVDSNEISFIRAGEGALKQALANA 661

Query: 2182 QPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGF 2361
               ++EPI  VE+  P +  G +   +NR+ G +  +  +     F + A +P+NE FG+
Sbjct: 662  TLCILEPIMSVEVIAPNEFQGQVIAGINRRHGVITGQDGI--EDYFTLYADVPLNEMFGY 719

Query: 2362 TADLRSNTGGQ 2394
            + +LRS T G+
Sbjct: 720  STELRSCTEGK 730



 Score = 60.5 bits (145), Expect = 9e-09
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAP-----ARAGETRXTDTRKDEQERRTTXKXTA 195
           RN   +AH D GK T T+      G  A       + G     D+ + E++R  T +  A
Sbjct: 67  RNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAA 126

Query: 196 XXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 375
               ++    D+N            IN+ID+PGHVDF+ EV  ALRV DGA+        
Sbjct: 127 TYTMWK----DVN------------INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGG 170

Query: 376 XXXQTETVLRQAIAERIKPVLMMNKMDR 459
              QT TV RQ     +  +  +NK+DR
Sbjct: 171 VQCQTMTVNRQMKRYNVPFLTFINKLDR 198


>ref|XP_535276.2| PREDICTED: similar to mitochondrial elongation factor G2 isoform 1
            [Canis familiaris].
          Length = 780

 Score =  101 bits (252), Expect = 4e-21
 Identities = 195/840 (23%), Positives = 312/840 (37%), Gaps = 48/840 (5%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
            A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68   AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193  AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
            A   +++                G+ +NLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127  AVTFDWK----------------GYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373  XXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVN------- 531
                QT TV RQA   ++  +  +NKMD+              +F+  VE++        
Sbjct: 171  GVEAQTLTVWRQADKHKVPRICFLNKMDKTG-----------ASFKYAVESIREKLKAKP 219

Query: 532  -VIISTYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLG 708
             ++    GEG++   G + +      V       G  F  K   EM  AK   +      
Sbjct: 220  LLLQLPLGEGKAFE-GVVDVVSKEKLVWNRKSEDGKDFERKPLLEMSDAKLLKE------ 272

Query: 709  PAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIM 888
              E    + + +  L  D + D   G+FS++                 L P  K+  AI 
Sbjct: 273  TTEARNALIEQVADL-DDEFADLVLGEFSEN---------------FDLLPAEKLQTAIH 316

Query: 889  NFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQ 1068
                 +TA     + +   S  K+K  +PLL A               IT++LPSP   +
Sbjct: 317  RVTLAQTA-----VPVLCGSALKNKGVQPLLDA---------------ITMYLPSP-EER 355

Query: 1069 KYRCELLYEGPPDDEAAMGIKSCDPK--GPLMMYISKMVPTSDKGRFYAFGRVFSGLVST 1242
             Y     Y+G   D  A+  K    K  GPL+                 F R++SG +  
Sbjct: 356  NYEFLQWYKG---DLCALSFKVLHDKQRGPLV-----------------FMRIYSGTIKP 395

Query: 1243 GLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTG 1422
               +  +  N T         + I R +L        I  +  GNI   VG    L  T 
Sbjct: 396  QSAIYNINGNCT---------ERISRLLLPFADQHIEIPSLTAGNIALTVG----LKHTA 442

Query: 1423 TITTF--------------------EHAHNMRVMKFSVS------PVVRVAVEAKNPADL 1524
            T  T                     +H  N    +  ++      PV    +E  + A  
Sbjct: 443  TGDTIASSKSSALAAARRAEREGEKKHRQNSEAERLLLAGVEIPEPVFFCTIEPPSVAKQ 502

Query: 1525 PKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPV 1701
            P L   LK L + DP ++  ++ +SG+ I+ G GELH+EI    ++ ++  +        
Sbjct: 503  PDLDYALKCLQREDPSLKVKLDPDSGQTILCGMGELHIEIIHDRIKREYG-LETYLGPLQ 561

Query: 1702 VSYRET---VSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRAR 1872
            V+YRET   V   ++ L  +    +H                      V+   E+K    
Sbjct: 562  VAYRETILNVVHATDTLDRTLGDKRH---------------------LVTVELEVKPNET 600

Query: 1873 YLAE---KYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEG 2043
                   KY   V+E                  D+ K  Q      +++  G   A  +G
Sbjct: 601  CCVTPVLKYAGCVSE------------------DLPKASQ------EAIENGIHSACLQG 636

Query: 2044 ALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA--RRCLYASVLTAQPRLMEPIYLVE 2217
             L    ++ V      +TLH+  IH G    + +A   RC+  ++  A  +++EP+  +E
Sbjct: 637  PLLGSPIQDVA-----ITLHSLIIHPGTSTTMISACVSRCVQKALKKADKQVLEPLMNLE 691

Query: 2218 IQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 2397
            +  P   +  +   L ++RG + +E Q       V+  ++P+ E  G++  LR+ T G A
Sbjct: 692  VTVPGDYLSPVLADLAQRRGTI-QEIQTRQENKIVI-GFVPLAEIMGYSTVLRTLTSGSA 749


>ref|XP_855380.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
          Length = 201

 Score = 83.2 bits (204), Expect(2) = 2e-18
 Identities = 47/98 (47%), Positives = 60/98 (61%)
 Frame = +1

Query: 2041 GALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEI 2220
            G  C+EN+RGV FD +DV L+ D I        PT    +  S+L       +PI+  E+
Sbjct: 103  GLPCQENVRGVGFDFYDVALYKDTI--------PTTPP-VAPSLLQHTDSRHQPIHPAEL 153

Query: 2221 QCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAY 2334
            Q  E++ GG+Y V NRK GHVFEESQVAGT M +VKAY
Sbjct: 154  QRLEELAGGLYSVFNRKEGHVFEESQVAGTSMCIVKAY 191



 Score = 30.0 bits (66), Expect(2) = 2e-18
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 1977 CAVPQRDQGQRGGWLPVG 2030
            C VP + +G  GGW+PVG
Sbjct: 86   CTVPWQRKGDHGGWMPVG 103



 Score = 82.8 bits (203), Expect = 2e-15
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +1

Query: 1375 NIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEG 1542
            +I GLV VD FL+KTGT TT E  HNM++MKFSV PV+  AVEAKNPADLP+LVEG
Sbjct: 6    DITGLVCVDYFLLKTGTTTTLEDTHNMQLMKFSVRPVITFAVEAKNPADLPRLVEG 61


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 124,549,279
Number of extensions: 3662928
Number of successful extensions: 16243
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 16142
Number of HSP's successfully gapped: 28
Length of query: 995
Length of database: 18,874,504
Length adjustment: 113
Effective length of query: 882
Effective length of database: 15,107,536
Effective search space: 13324846752
Effective search space used: 13324846752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000953
         (2985 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001952.1| elongation factor 2 [Homo sapiens].                 1586   0.0  
Alignment   gi|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein c...   582   e-166
Alignment   gi|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein comp...   582   e-166
Alignment   gi|NP_001035700.1| elongation factor Tu GTP-binding domain-cont...   225   2e-58
Alignment   gi|NP_078856.4| elongation factor Tu GTP-binding domain-contain...   225   2e-58
Alignment   gi|NP_115756.2| ribosome-releasing factor 2, mitochondrial isof...   103   1e-21
Alignment   gi|NP_079272.4| elongation factor G, mitochondrial precursor [H...   103   1e-21
Alignment   gi|NP_733792.1| ribosome-releasing factor 2, mitochondrial isof...    69   2e-11
Alignment   gi|NP_733781.1| ribosome-releasing factor 2, mitochondrial isof...    69   2e-11
Alignment   gi|NP_068746.2| translation factor GUF1, mitochondrial [Homo sa...    55   3e-07

>ref|NP_001952.1| elongation factor 2 [Homo sapiens].
          Length = 858

 Score = 1586 bits (4106), Expect = 0.0
 Identities = 795/849 (93%), Positives = 800/849 (94%)
 Frame = +1

Query: 1    RXXRDKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTT 180
            R   DKKA  RN    AH D GK+T TD+   KAG  A ARAGETR TDTRKDEQER  T
Sbjct: 10   RAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCIT 69

Query: 181  XKXTAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 360
             K TA    YELSENDLNFIKQSKDG+GFLINLIDSPGHVDFSSEVTAALRVTDGAL   
Sbjct: 70   IKSTAISLFYELSENDLNFIKQSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 129

Query: 361  XXXXXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVII 540
                    QTETVLRQAIAERIKPVLMMNKMDRA           YQTFQRIVENVNVII
Sbjct: 130  DCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVII 189

Query: 541  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 720
            STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER
Sbjct: 190  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 249

Query: 721  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 900
            AKKVEDMMKKLWGDRYFDPANGKFSKSATSP+GKKLPRTFCQLILDPIFKVFDAIMNFKK
Sbjct: 250  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPEGKKLPRTFCQLILDPIFKVFDAIMNFKK 309

Query: 901  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 1080
            EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC
Sbjct: 310  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 369

Query: 1081 ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 1260
            ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI
Sbjct: 370  ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 429

Query: 1261 MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 1440
            MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE
Sbjct: 430  MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 489

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
            HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA
Sbjct: 490  HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 549

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF
Sbjct: 550  GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 609

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
            PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV
Sbjct: 610  PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 669

Query: 1981 QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 2160
            QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL
Sbjct: 670  QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 729

Query: 2161 YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 2340
            YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP
Sbjct: 730  YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 789

Query: 2341 VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP 2520
            VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDN+SRPSQVVAETRKRKGLKEGIP
Sbjct: 790  VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIP 849

Query: 2521 ALDNFLDKL 2547
            ALDNFLDKL
Sbjct: 850  ALDNFLDKL 858


>ref|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo
            sapiens].
          Length = 937

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 89   DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 148

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 149  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 197

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 198  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 257

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 258  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 307

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 308  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 357

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 358  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 417

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 418  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 477

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 478  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 537

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 538  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 597

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 598  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 657

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 658  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 717

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 718  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 777

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 778  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 837

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 838  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 897

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 898  FMIKTRRRKGLSEDV-SISKFFD 919


>ref|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo
            sapiens].
          Length = 972

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 124  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 183

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 184  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 232

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 233  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 292

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 293  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 342

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 343  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 392

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 393  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 452

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 453  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 512

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 513  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 572

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 573  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 632

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 633  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 692

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 693  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 752

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 753  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 812

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 813  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 872

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 873  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 932

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 933  FMIKTRRRKGLSEDV-SISKFFD 954


>ref|NP_001035700.1| elongation factor Tu GTP-binding domain-containing protein 1 isoform
            2 [Homo sapiens].
          Length = 1069

 Score =  225 bits (574), Expect = 2e-58
 Identities = 173/633 (27%), Positives = 280/633 (44%), Gaps = 162/633 (25%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            E P  DE    ++S  PK  L          +++  F AF RVFSG+   G K+ ++GP 
Sbjct: 427  EEPRGDEQQ--VESMTPKPVLQ-------EENNQESFIAFARVFSGVARRGKKIFVLGPK 477

Query: 1273 YTP------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVPCGNIVGLVGV 1398
            Y+P               + L   P      ++   L+MGR +E +E+VP GN++G+ G+
Sbjct: 478  YSPLEFLRRVPLGFSAPPDGLPQVPHMAYCALENLYLLMGRELEYLEEVPPGNVLGIGGL 537

Query: 1399 DQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQ 1578
              F++K+ T+ +         + F  +P+VRVAVE K+P+++P+LV+G+K L ++DP VQ
Sbjct: 538  QDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQ 597

Query: 1579 CIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE---------- 1728
             +I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++          
Sbjct: 598  ILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPPKVDMVNEE 657

Query: 1729 --------------------------ESNVLCLSKSPNKHNRLYMKARPFP--------- 1803
                                      +S+ L    +PNK   L ++A P P         
Sbjct: 658  IGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEE 717

Query: 1804 --------DGLAEDIDKGEVS--ARQELKQRARYLAEKYEWDVAEAR------KIWCFGP 1935
                    + L   +++GE +    Q+ +++      K E  +   R      +IW FGP
Sbjct: 718  NSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGP 777

Query: 1936 DGTGPNILTD----------------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENMR 2067
               GPNIL +                 +K      ++ +S+V+GFQ AT  G +CEE + 
Sbjct: 778  RKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLM 837

Query: 2068 GVRF----------------DVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLME 2199
            GV F                D+       +    GG +       C  A       +   
Sbjct: 838  GVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGES 897

Query: 2200 PI--------------------YLVEIQCPEQVVGGIY---------------GVLNRKR 2274
            P+                    Y ++++ P++++  +Y                VL+++ 
Sbjct: 898  PLTDCYGPFSGQLIATMKEACRYALQVK-PQRLMAAMYTCDIMATGDVLGRVYAVLSKRE 956

Query: 2275 GHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF-- 2448
            G V +E    GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+P DPF  
Sbjct: 957  GRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWV 1016

Query: 2449 --------------DNTSRPSQVVAETRKRKGL 2505
                          D+ ++  + +   RKRKGL
Sbjct: 1017 PTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1049



 Score =  149 bits (375), Expect = 2e-35
 Identities = 107/354 (30%), Positives = 159/354 (44%), Gaps = 44/354 (12%)
 Frame = +1

Query: 265  FLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPVLMM 444
            +LINLIDSPGHVDFSSEV+ A+R+ DG +           QT+ VLRQA  E I+PVL++
Sbjct: 35   YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVI 94

Query: 445  NKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY------------------------G 552
            NK+DR            Y   + I+E +N +  T                         G
Sbjct: 95   NKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQG 154

Query: 553  EG--------ESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLG 708
            E         E     ++   P  G V F S + GW F ++ FA +Y  K   K E    
Sbjct: 155  EQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEV--- 211

Query: 709  PAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIM 888
                      +MK LWGD Y +    K  K   +   K L   F QLIL+ I+ ++DA++
Sbjct: 212  ----------LMKTLWGDYYINMKAKKIMKGDQAKGKKPL---FVQLILENIWSLYDAVL 258

Query: 889  NFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTA 1065
               K++  K++  L +K+ + E +  + K  + A+  +WLP   A+L M+   LPSP+  
Sbjct: 259  KKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDI 318

Query: 1066 QKYRCELLY--------EGPPDDEA-AMGIKSC--DPKGPLMMYISKMVPTSDK 1194
               R E L           PP+ +A       C  +   P+++++SKM     K
Sbjct: 319  TAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAK 372


>ref|NP_078856.4| elongation factor Tu GTP-binding domain-containing protein 1 isoform
            1 [Homo sapiens].
          Length = 1120

 Score =  225 bits (574), Expect = 2e-58
 Identities = 173/633 (27%), Positives = 280/633 (44%), Gaps = 162/633 (25%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            E P  DE    ++S  PK  L          +++  F AF RVFSG+   G K+ ++GP 
Sbjct: 478  EEPRGDEQQ--VESMTPKPVLQ-------EENNQESFIAFARVFSGVARRGKKIFVLGPK 528

Query: 1273 YTP------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVPCGNIVGLVGV 1398
            Y+P               + L   P      ++   L+MGR +E +E+VP GN++G+ G+
Sbjct: 529  YSPLEFLRRVPLGFSAPPDGLPQVPHMAYCALENLYLLMGRELEYLEEVPPGNVLGIGGL 588

Query: 1399 DQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQ 1578
              F++K+ T+ +         + F  +P+VRVAVE K+P+++P+LV+G+K L ++DP VQ
Sbjct: 589  QDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQ 648

Query: 1579 CIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE---------- 1728
             +I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++          
Sbjct: 649  ILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPPKVDMVNEE 708

Query: 1729 --------------------------ESNVLCLSKSPNKHNRLYMKARPFP--------- 1803
                                      +S+ L    +PNK   L ++A P P         
Sbjct: 709  IGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEE 768

Query: 1804 --------DGLAEDIDKGEVS--ARQELKQRARYLAEKYEWDVAEAR------KIWCFGP 1935
                    + L   +++GE +    Q+ +++      K E  +   R      +IW FGP
Sbjct: 769  NSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGP 828

Query: 1936 DGTGPNILTD----------------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENMR 2067
               GPNIL +                 +K      ++ +S+V+GFQ AT  G +CEE + 
Sbjct: 829  RKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLM 888

Query: 2068 GVRF----------------DVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLME 2199
            GV F                D+       +    GG +       C  A       +   
Sbjct: 889  GVCFVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGES 948

Query: 2200 PI--------------------YLVEIQCPEQVVGGIY---------------GVLNRKR 2274
            P+                    Y ++++ P++++  +Y                VL+++ 
Sbjct: 949  PLTDCYGPFSGQLIATMKEACRYALQVK-PQRLMAAMYTCDIMATGDVLGRVYAVLSKRE 1007

Query: 2275 GHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF-- 2448
            G V +E    GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+P DPF  
Sbjct: 1008 GRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWV 1067

Query: 2449 --------------DNTSRPSQVVAETRKRKGL 2505
                          D+ ++  + +   RKRKGL
Sbjct: 1068 PTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100



 Score =  179 bits (453), Expect = 2e-44
 Identities = 132/435 (30%), Positives = 191/435 (43%), Gaps = 44/435 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y     +            +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHYATGNEE------------YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIIST----- 546
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 547  -------------------YGEG--------ESGPMGNIMIDPVLGTVGFGSGLHGWAFT 645
                                GE         E     ++   P  G V F S + GW F 
Sbjct: 185  VLEERAERETESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA +Y  K                K E +MK LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFARIYSQKIGI-------------KKEVLMKTLWGDYYINMKAKKIMKGDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL+ I+ ++DA++   K++  K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCELLY--------EGPPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E L           PP+ +A       C  +   
Sbjct: 349  LPISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKMVPTSDK 1194
            P+++++SKM     K
Sbjct: 409  PVIIFVSKMFAVDAK 423


>ref|NP_115756.2| ribosome-releasing factor 2, mitochondrial isoform 1 [Homo sapiens].
          Length = 779

 Score =  103 bits (256), Expect = 1e-21
 Identities = 183/834 (21%), Positives = 317/834 (38%), Gaps = 42/834 (5%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
            A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68   AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193  AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
            A   +++                G+ +NLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127  AVTFDWK----------------GYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373  XXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVN------- 531
                QT TV RQA    I  +  +NKMD+              +F+  VE++        
Sbjct: 171  GVEAQTLTVWRQADKHNIPRICFLNKMDKTG-----------ASFKYAVESIREKLKAKP 219

Query: 532  -VIISTYGEGES--GPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQ 702
             ++    GE ++  G +  +M + +L       G       L +  +  + K   +    
Sbjct: 220  LLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNA 279

Query: 703  LGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDA 882
            L      ++V D+      D + D    +FS++                 L P  K+  A
Sbjct: 280  L-----IEQVADL-----DDEFADLVLEEFSEN---------------FDLLPAEKLQTA 314

Query: 883  IMNFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVT 1062
            I      +TA     + +   S  K+K  +PLL AV               T++LPSP  
Sbjct: 315  IHRVTLAQTA-----VPVLCGSALKNKGIQPLLDAV---------------TMYLPSP-E 353

Query: 1063 AQKYRCELLYEGPPDDEAAMGIKSCDPK--GPLMMYISKMVPTSDKGRFYAFGRVFSGLV 1236
             + Y     Y+   DD  A+  K    K  GPL+                 F R++SG +
Sbjct: 354  ERNYEFLQWYK---DDLCALAFKVLHDKQRGPLV-----------------FMRIYSGTI 393

Query: 1237 STGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVK 1416
               L +  +  N T         + I R +L        I  +  GNI   VG+      
Sbjct: 394  KPQLAIHNINGNCT---------ERISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATG 444

Query: 1417 TGTITT----------------FEHAHNMRVMKFSVS------PVVRVAVEAKNPADLPK 1530
               +++                 +H  N    +  ++      PV    +E  + +  P 
Sbjct: 445  DTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLLAGVEIPEPVFFCTIEPPSLSKQPD 504

Query: 1531 LVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 1707
            L   LK L + DP ++  ++ +SG+ ++ G GELH+EI    ++ ++  +        V+
Sbjct: 505  LEHALKCLQREDPSLKVRLDPDSGQTVLCGMGELHIEIIHDRIKREYG-LETYLGPLQVA 563

Query: 1708 YRETVSEE---SNVLCLSKSPNKH-NRLYMKARPFPDGLAEDIDKGEVSARQELKQRARY 1875
            YRET+      ++ L  +    +H   + ++ARP            E S+          
Sbjct: 564  YRETILNSVRATDTLDRTLGDKRHLVTVEVEARPI-----------ETSS---------- 602

Query: 1876 LAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCE 2055
            +    E++ AE+                  I +G+  L   ++++  G   A  +G L  
Sbjct: 603  VMPVIEFEYAES------------------INEGL--LKVSQEAIENGIHSACLQGPLLG 642

Query: 2056 ENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQ 2235
              ++ V   +H +T+H          I     RC+  ++  A  +++EP+  +E+     
Sbjct: 643  SPIQDVAITLHSLTIHPGT---STTMISACVSRCVQKALKKADKQVLEPLMNLEVTVARD 699

Query: 2236 VVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 2397
             +  +   L ++RG++ +E Q       V+  ++P+ E  G++  LR+ T G A
Sbjct: 700  YLSPVLADLAQRRGNI-QEIQTRQDNKVVI-GFVPLAEIMGYSTVLRTLTSGSA 751


>ref|NP_079272.4| elongation factor G, mitochondrial precursor [Homo sapiens].
          Length = 751

 Score =  103 bits (256), Expect = 1e-21
 Identities = 125/528 (23%), Positives = 208/528 (39%), Gaps = 7/528 (1%)
 Frame = +1

Query: 940  LDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAA 1119
            L S  K+K  +PLL AV+                +LP+P   Q Y      +   +    
Sbjct: 297  LGSALKNKGVQPLLDAVLE---------------YLPNPSEVQNYAILNKEDDSKEKTKI 341

Query: 1120 MGIKSCDPKGPLMMYISKMVPTSDKGRF--YAFGRVFSGLVSTGLKVRIMGPNYTPGKKE 1293
            +   S D   P +    K+    + GRF    + R + G +  G  +     N    KK 
Sbjct: 342  LMNSSRDNSHPFVGLAFKL----EVGRFGQLTYVRSYQGELKKGDTIY----NTRTRKKV 393

Query: 1294 DLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFS 1473
             L     QR   M    +E +E+V  G+I  L G+D       +  TF    N  +   S
Sbjct: 394  RL-----QRLARMHADMMEDVEEVYAGDICALFGID-----CASGDTFTDKANSGLSMES 443

Query: 1474 V---SPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEI 1641
            +    PV+ +A++  N  DL K  +G+ R  + DP  +   + E+ E +I+G GELHLEI
Sbjct: 444  IHVPDPVISIAMKPSNKNDLEKFSKGIGRFTREDPTFKVYFDTENKETVISGMGELHLEI 503

Query: 1642 CLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAED 1821
              + LE ++ C P     P V++RET++         K  +     Y K      G+ E 
Sbjct: 504  YAQRLEREYGC-PCITGKPKVAFRETITAPVPFDFTHKKQSGGAGQYGKV----IGVLEP 558

Query: 1822 IDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIK 2001
            +D  + +  +                                    +D T G     +  
Sbjct: 559  LDPEDYTKLE-----------------------------------FSDETFGSNIPKQFV 583

Query: 2002 DSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTA 2181
             +V  GF  A ++G L    + G+RF + D   H   +       I      L  ++  A
Sbjct: 584  PAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHH--MVDSNEISFIRAGEGALKQALANA 641

Query: 2182 QPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGF 2361
               ++EPI  VE+  P +  G +   +NR+ G +  +  V     F + A +P+N+ FG+
Sbjct: 642  TLCILEPIMAVEVVAPNEFQGQVIAGINRRHGVITGQDGV--EDYFTLYADVPLNDMFGY 699

Query: 2362 TADLRSNTGGQAFPQCVFDHWQ-ILPGDPFDNTSRPSQVVAETRKRKG 2502
            + +LRS T G+      +  +Q  LP    D  ++  +   +   +KG
Sbjct: 700  STELRSCTEGKGEYTMEYSRYQPCLPSTQEDVINKYLEATGQLPVKKG 747



 Score = 60.5 bits (145), Expect = 9e-09
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAP-----ARAGETRXTDTRKDEQERRTTXKXTA 195
           RN   +AH D GK T T+      G  A       + G     D+ + E++R  T +  A
Sbjct: 47  RNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAA 106

Query: 196 XXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 375
               ++    D+N            IN+ID+PGHVDF+ EV  ALRV DGA+        
Sbjct: 107 TYTMWK----DVN------------INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGG 150

Query: 376 XXXQTETVLRQAIAERIKPVLMMNKMDR 459
              QT TV RQ     +  +  +NK+DR
Sbjct: 151 VQCQTMTVNRQMKRYNVPFLTFINKLDR 178


>ref|NP_733792.1| ribosome-releasing factor 2, mitochondrial isoform 2 [Homo
           sapiens].
          Length = 732

 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 51/149 (34%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
 Frame = +1

Query: 22  AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
           A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193 AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
           A   +++                G+ +NLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127 AVTFDWK----------------GYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373 XXXXQTETVLRQAIAERIKPVLMMNKMDR 459
               QT TV RQA    I  +  +NKMD+
Sbjct: 171 GVEAQTLTVWRQADKHNIPRICFLNKMDK 199


>ref|NP_733781.1| ribosome-releasing factor 2, mitochondrial isoform 3 [Homo
           sapiens].
          Length = 513

 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 51/149 (34%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
 Frame = +1

Query: 22  AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
           A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193 AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
           A   +++                G+ +NLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127 AVTFDWK----------------GYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373 XXXXQTETVLRQAIAERIKPVLMMNKMDR 459
               QT TV RQA    I  +  +NKMD+
Sbjct: 171 GVEAQTLTVWRQADKHNIPRICFLNKMDK 199


>ref|NP_068746.2| translation factor GUF1, mitochondrial [Homo sapiens].
          Length = 669

 Score = 55.5 bits (132), Expect = 3e-07
 Identities = 41/142 (28%), Positives = 59/142 (41%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXXXNY 210
           RN    AH D GK+T  D      G     +  + +  D  + E+ER  T K       Y
Sbjct: 69  RNFSIVAHVDHGKSTLADRLLELTGTIDKTKNNK-QVLDKLQVERERGITVKAQTASLFY 127

Query: 211 ELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT 390
                         +G  +L+NLID+PGHVDFS EV+ +L    G L           QT
Sbjct: 128 NC------------EGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQT 175

Query: 391 ETVLRQAIAERIKPVLMMNKMD 456
                 A   ++  + ++NK+D
Sbjct: 176 VANFFLAFEAQLSVIPVINKID 197


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 121,980,546
Number of extensions: 3581713
Number of successful extensions: 16112
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 15967
Number of HSP's successfully gapped: 18
Length of query: 995
Length of database: 18,297,164
Length adjustment: 112
Effective length of query: 883
Effective length of database: 14,605,196
Effective search space: 12896388068
Effective search space used: 12896388068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000953
         (2985 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031933.1| elongation factor 2 [Mus musculus].                 1576   0.0  
Alignment   gi|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein c...   583   e-166
Alignment   gi|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein comp...   583   e-166
Alignment   gi|NP_001153144.1| elongation factor Tu GTP-binding domain-cont...   248   2e-65
Alignment   gi|NP_780526.2| elongation factor Tu GTP-binding domain-contain...   248   2e-65
Alignment   gi|NP_796240.3| ribosome-releasing factor 2, mitochondrial isof...   110   5e-24
Alignment   gi|NP_001139515.1| ribosome-releasing factor 2, mitochondrial i...   101   4e-21
Alignment   gi|NP_613057.2| elongation factor G, mitochondrial precursor [M...    98   4e-20
Alignment   gi|NP_766299.1| translation factor Guf1, mitochondrial [Mus mus...    55   3e-07

>ref|NP_031933.1| elongation factor 2 [Mus musculus].
          Length = 858

 Score = 1576 bits (4082), Expect = 0.0
 Identities = 791/849 (93%), Positives = 796/849 (93%)
 Frame = +1

Query: 1    RXXRDKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTT 180
            R   DKKA  RN    AH D GK+T TD+   KAG  A ARAGETR TDTRKDEQER  T
Sbjct: 10   RAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCIT 69

Query: 181  XKXTAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 360
             K TA    YELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGAL   
Sbjct: 70   IKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 129

Query: 361  XXXXXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVII 540
                    QTETVLRQAIAERIKPVLMMNKMDRA           YQTFQRIVENVNVII
Sbjct: 130  DCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVII 189

Query: 541  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 720
            STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQL  AER
Sbjct: 190  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLSAAER 249

Query: 721  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 900
            AKKVEDMMKKLWGDRYFDPANGKFSKSA SPDGKKLPRTFCQLILDPIFKVFDAIMNF+K
Sbjct: 250  AKKVEDMMKKLWGDRYFDPANGKFSKSANSPDGKKLPRTFCQLILDPIFKVFDAIMNFRK 309

Query: 901  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 1080
            EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC
Sbjct: 310  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 369

Query: 1081 ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 1260
            ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSG+VSTGLKVRI
Sbjct: 370  ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGVVSTGLKVRI 429

Query: 1261 MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 1440
            MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE
Sbjct: 430  MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 489

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
            HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA
Sbjct: 490  HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 549

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF
Sbjct: 550  GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 609

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
            PDGLAEDIDKGEVSARQELK RARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV
Sbjct: 610  PDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 669

Query: 1981 QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 2160
            QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL
Sbjct: 670  QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 729

Query: 2161 YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 2340
            YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP
Sbjct: 730  YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 789

Query: 2341 VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP 2520
            VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDN+SRPSQVVAETRKRKGLKEGIP
Sbjct: 790  VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNSSRPSQVVAETRKRKGLKEGIP 849

Query: 2521 ALDNFLDKL 2547
            ALDNFLDKL
Sbjct: 850  ALDNFLDKL 858


>ref|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Mus
            musculus].
          Length = 972

 Score =  583 bits (1503), Expect = e-166
 Identities = 326/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 124  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 183

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 184  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 232

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 233  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 292

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 293  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 342

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A S   +   R+F + IL+P++K+   ++       
Sbjct: 343  -------LWGDIYFNPKTRKFTKKAPSSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 392

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 393  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 452

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 453  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 512

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 513  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 572

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 573  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 632

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 633  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 692

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 693  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 752

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 753  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 812

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 813  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 872

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 873  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 932

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 933  FMIKTRRRKGLSEDV-SISKFFD 954


>ref|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Mus
            musculus].
          Length = 971

 Score =  583 bits (1503), Expect = e-166
 Identities = 326/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 123  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 182

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 183  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 231

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 232  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 291

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 292  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 341

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A S   +   R+F + IL+P++K+   ++       
Sbjct: 342  -------LWGDIYFNPKTRKFTKKAPSSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 391

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 392  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 451

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 452  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 511

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 512  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 571

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 572  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 631

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 632  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 691

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 692  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 751

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 752  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 811

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 812  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 871

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 872  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 931

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 932  FMIKTRRRKGLSEDV-SISKFFD 953


>ref|NP_001153144.1| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
            musculus].
          Length = 1127

 Score =  248 bits (633), Expect = 2e-65
 Identities = 181/647 (27%), Positives = 291/647 (44%), Gaps = 176/647 (27%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIK--SCDPKG--PLMMYISKMVPTSDKGR---FYAFGRVFSGLVSTGLK 1251
            +GP  D  A+       +P+G  P +  +S+   + ++     F AF RVFSG+   G K
Sbjct: 462  QGPTQDGGALETSPHEDEPRGDEPDVASVSRQPVSQEESSQEAFIAFARVFSGIARRGKK 521

Query: 1252 VRIMGPNYTP------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVPCGN 1377
            + ++GP Y+P               EDL   P      ++   L+MGR +E +E+VP GN
Sbjct: 522  IFVLGPKYSPVDFLQRVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGN 581

Query: 1378 IVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLA 1557
            ++G+ G+  F++K+ T+ +         + F  +P+VRVAVE K+P+++P+LV+G+K L 
Sbjct: 582  VLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLN 641

Query: 1558 KSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE--- 1728
            ++DP VQ +I+E+GEH++  AGE+HL+ CL DL E  A I I  S+P++ +RET+++   
Sbjct: 642  QADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPK 701

Query: 1729 ---------------------------------ESNVLCLSKSPNKHNRLYMKARPFPDG 1809
                                             +S+ L    +PNK   L ++A P P+ 
Sbjct: 702  VDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEE 761

Query: 1810 LAEDIDKGEVSAR---------------QELKQRARYLAEKYEWDVAE----------AR 1914
            +   +++     R               Q + Q+ +    +++  + +            
Sbjct: 762  VTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVD 821

Query: 1915 KIWCFGPDGTGPNILTDITKGVQ----------------YLNEIKDSVVAGFQWATKEGA 2046
            +IW FGP   GPNIL   ++  Q                   +  +S+V+GFQ AT  G 
Sbjct: 822  QIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGP 881

Query: 2047 LCEENMRGVRFDVHDVTLH-------ADAIHRG--------------------------- 2124
            +CEE + GV F +    L+       +D  H+G                           
Sbjct: 882  MCEEPLMGVCFVLEKWELNKCAEQGASDKQHQGQCDLAGEGQGGGKTCHVGDENQEQQDV 941

Query: 2125 -----------------------GGQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPE 2232
                                    GQ+I T +  C YA  +  Q RLM  +Y  +I    
Sbjct: 942  CSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATS 1000

Query: 2233 QVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCV 2412
             V+G +Y VL+++ G V +E    GT MF++KA LPV ESFGF  ++R  T G A PQ V
Sbjct: 1001 DVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLV 1060

Query: 2413 FDHWQILPGDPF----------------DNTSRPSQVVAETRKRKGL 2505
            F HW+++P DPF                D+ ++  + +   RKRKGL
Sbjct: 1061 FSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107



 Score =  178 bits (452), Expect = 2e-44
 Identities = 132/429 (30%), Positives = 192/429 (44%), Gaps = 44/429 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y     +            +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHYAEGHEE------------YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY---- 549
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 550  ---------GEGESGPM-------------------GNIMIDPVLGTVGFGSGLHGWAFT 645
                      E ++ P                      +   P  G V F S + GW F 
Sbjct: 185  VLEERAERETESQAKPHSEQGEQVYDWSAGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA +Y  K                K E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFARIYSQKIGI-------------KKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL+ I+ ++DA++   KE+  K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILENIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E LL  G       PP+ +A       C  +   
Sbjct: 349  LPISHAVLAMVCHKLPSPLDMTSERVEKLLCTGSQTFESLPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKM 1176
            P+++++SKM
Sbjct: 409  PVIIFVSKM 417


>ref|NP_780526.2| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
            musculus].
          Length = 1127

 Score =  248 bits (633), Expect = 2e-65
 Identities = 181/647 (27%), Positives = 291/647 (44%), Gaps = 176/647 (27%)
 Frame = +1

Query: 1093 EGPPDDEAAMGIK--SCDPKG--PLMMYISKMVPTSDKGR---FYAFGRVFSGLVSTGLK 1251
            +GP  D  A+       +P+G  P +  +S+   + ++     F AF RVFSG+   G K
Sbjct: 462  QGPTQDGGALETSPHEDEPRGDEPDVASVSRQPVSQEESSQEAFIAFARVFSGIARRGKK 521

Query: 1252 VRIMGPNYTP------------GKKEDLYLKP------IQRTILMMGRYVEPIEDVPCGN 1377
            + ++GP Y+P               EDL   P      ++   L+MGR +E +E+VP GN
Sbjct: 522  IFVLGPKYSPVDFLQRVPLGFSAPLEDLPPVPHMACCTLENLYLLMGRELEDLEEVPPGN 581

Query: 1378 IVGLVGVDQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLA 1557
            ++G+ G+  F++K+ T+ +         + F  +P+VRVAVE K+P+++P+LV+G+K L 
Sbjct: 582  VLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLN 641

Query: 1558 KSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSE--- 1728
            ++DP VQ +I+E+GEH++  AGE+HL+ CL DL E  A I I  S+P++ +RET+++   
Sbjct: 642  QADPCVQVLIQETGEHVLVTAGEVHLQRCLDDLRERFAKIHISVSEPIIPFRETITKPPK 701

Query: 1729 ---------------------------------ESNVLCLSKSPNKHNRLYMKARPFPDG 1809
                                             +S+ L    +PNK   L ++A P P+ 
Sbjct: 702  VDMVNEEIGRQQKVAVIHQTKEEQSKIPEGIHVDSDGLITIPTPNKLATLSVRAIPLPEE 761

Query: 1810 LAEDIDKGEVSAR---------------QELKQRARYLAEKYEWDVAE----------AR 1914
            +   +++     R               Q + Q+ +    +++  + +            
Sbjct: 762  VTRILEENSDLIRSMELLTSSLNEGRNTQAIHQKTQEKIWEFKGKLEKHLTGRKWRNTVD 821

Query: 1915 KIWCFGPDGTGPNILTDITKGVQ----------------YLNEIKDSVVAGFQWATKEGA 2046
            +IW FGP   GPNIL   ++  Q                   +  +S+V+GFQ AT  G 
Sbjct: 822  QIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGP 881

Query: 2047 LCEENMRGVRFDVHDVTLH-------ADAIHRG--------------------------- 2124
            +CEE + GV F +    L+       +D  H+G                           
Sbjct: 882  MCEEPLMGVCFVLEKWELNKCAEQGASDKQHQGQCDLAGEGQGGGKTCHVGDENQEQQDV 941

Query: 2125 -----------------------GGQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPE 2232
                                    GQ+I T +  C YA  +  Q RLM  +Y  +I    
Sbjct: 942  CSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATS 1000

Query: 2233 QVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCV 2412
             V+G +Y VL+++ G V +E    GT MF++KA LPV ESFGF  ++R  T G A PQ V
Sbjct: 1001 DVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLV 1060

Query: 2413 FDHWQILPGDPF----------------DNTSRPSQVVAETRKRKGL 2505
            F HW+++P DPF                D+ ++  + +   RKRKGL
Sbjct: 1061 FSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107



 Score =  178 bits (452), Expect = 2e-44
 Identities = 132/429 (30%), Positives = 192/429 (44%), Gaps = 44/429 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y     +            +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHYAEGHEE------------YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY---- 549
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 550  ---------GEGESGPM-------------------GNIMIDPVLGTVGFGSGLHGWAFT 645
                      E ++ P                      +   P  G V F S + GW F 
Sbjct: 185  VLEERAERETESQAKPHSEQGEQVYDWSAGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA +Y  K                K E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFARIYSQKIGI-------------KKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL+ I+ ++DA++   KE+  K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILENIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E LL  G       PP+ +A       C  +   
Sbjct: 349  LPISHAVLAMVCHKLPSPLDMTSERVEKLLCTGSQTFESLPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKM 1176
            P+++++SKM
Sbjct: 409  PVIIFVSKM 417


>ref|NP_796240.3| ribosome-releasing factor 2, mitochondrial isoform 1 [Mus musculus].
          Length = 779

 Score =  110 bits (276), Expect = 5e-24
 Identities = 191/831 (22%), Positives = 316/831 (38%), Gaps = 39/831 (4%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
            A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68   AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193  AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
            A                 + D  G+ +NLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127  AV----------------TLDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373  XXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVN------- 531
                QT TV RQA   +I  +  +NKMD+              +F   VE++        
Sbjct: 171  GVEAQTLTVWRQADKHKIPRICFLNKMDKTG-----------ASFNYAVESIREKLKAKP 219

Query: 532  -VIISTYGEGES--GPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQ 702
             ++    GE  +  G +  +  + +L       G       L + ++  + K   +    
Sbjct: 220  LILQLPIGEARTFQGVVDVVNKEKLLWNSNSDDGKDFERMPLSEASDRELLKETIEARNS 279

Query: 703  LGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDA 882
            L      ++V D+      D + D   G+FS++                 L P  K+  A
Sbjct: 280  L-----IEQVADL-----DDEFADLVLGEFSEN---------------FDLVPAEKLQAA 314

Query: 883  IMNFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVT 1062
            +      + A     + +   S  K+K  +PLL AV               T +LPSP  
Sbjct: 315  VHRVTLAQAA-----VPVLCGSALKNKGVQPLLDAV---------------TTYLPSP-E 353

Query: 1063 AQKYRCELLYEGPPDDEAAMGIKSCDPK--GPLMMYISKMVPTSDKGRFYAFGRVFSGLV 1236
             ++ R    YEG   D  A+  K    K  GPL+                 F R++SG +
Sbjct: 354  EREDRFLQWYEG---DLCALAFKVLHDKQRGPLV-----------------FLRIYSGTL 393

Query: 1237 STGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVK 1416
            +  L V  +  N T         + + R +L        I  +  GNI   VG+ Q    
Sbjct: 394  TPQLAVHNINRNCT---------ERMSRLLLPFADQHVEIPSLTAGNIALTVGLKQTATG 444

Query: 1417 TGTITT-------------FEHAHNMRVMKFSV--------SPVVRVAVEAKNPADLPKL 1533
               +++              E  H  +    S+         PV    +E  + A  P L
Sbjct: 445  DTIVSSKSSALAAARRAGRGEREHGKKREAESLLLAGVEVPEPVFFCTIEPPSVAKQPDL 504

Query: 1534 VEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 1710
               L+RL + DP ++  ++ +SG+ ++ G GELH+EI    ++ ++  +        V+Y
Sbjct: 505  DHALERLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYG-LETYLGPLQVAY 563

Query: 1711 RETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKY 1890
            RET+                    ++A    D +  D  +  VSA  E++      A   
Sbjct: 564  RETILNS-----------------VRATDTLDRVLGD-KRHLVSAELEVRPAEEPCA--- 602

Query: 1891 EWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRG 2070
               VA+     C G D                L   ++++ +    A  +G L    ++ 
Sbjct: 603  ---VAKIEYADCVGED---------------LLQASREAIESAVHSACLQGPLLGSPVQD 644

Query: 2071 VRFDVHDVTLHADAIHRGGGQIIPTA--RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVG 2244
            V      +TLH+  IH G    + TA   RC+  ++  A  +++EP+  +E+    + + 
Sbjct: 645  VA-----MTLHSLMIHPGTSTTMVTACISRCMQKALKKADKQVLEPLMSLEVTVSREYLS 699

Query: 2245 GIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQA 2397
             +   L ++RG++ +E Q       VV  ++P+ E  G++  LR+ T G A
Sbjct: 700  PVLADLAQRRGNI-QEIQTRQDNR-VVLGFVPLAEIMGYSTVLRTLTSGSA 748


>ref|NP_001139515.1| ribosome-releasing factor 2, mitochondrial isoform 2 [Mus musculus].
          Length = 741

 Score =  101 bits (251), Expect = 4e-21
 Identities = 180/795 (22%), Positives = 298/795 (37%), Gaps = 39/795 (4%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXT 192
            A  RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  
Sbjct: 68   AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126

Query: 193  AXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXX 372
            A                 + D  G+ +NLID+PGHVDF+ EV   LRV DGA+       
Sbjct: 127  AV----------------TLDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170

Query: 373  XXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVN------- 531
                QT TV RQA   +I  +  +NKMD+              +F   VE++        
Sbjct: 171  GVEAQTLTVWRQADKHKIPRICFLNKMDKTG-----------ASFNYAVESIREKLKAKP 219

Query: 532  -VIISTYGEGES--GPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQ 702
             ++    GE  +  G +  +  + +L       G       L + ++  + K   +    
Sbjct: 220  LILQLPIGEARTFQGVVDVVNKEKLLWNSNSDDGKDFERMPLSEASDRELLKETIEARNS 279

Query: 703  LGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDA 882
            L      ++V D+      D + D   G+FS++                 L P  K+  A
Sbjct: 280  L-----IEQVADL-----DDEFADLVLGEFSEN---------------FDLVPAEKLQAA 314

Query: 883  IMNFKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVT 1062
            +      + A     + +   S  K+K  +PLL AV               T +LPSP  
Sbjct: 315  VHRVTLAQAA-----VPVLCGSALKNKGVQPLLDAV---------------TTYLPSP-E 353

Query: 1063 AQKYRCELLYEGPPDDEAAMGIKSCDPK--GPLMMYISKMVPTSDKGRFYAFGRVFSGLV 1236
             ++ R    YEG   D  A+  K    K  GPL+                 F R++SG +
Sbjct: 354  EREDRFLQWYEG---DLCALAFKVLHDKQRGPLV-----------------FLRIYSGTL 393

Query: 1237 STGLKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVK 1416
            +  L V  +  N T         + + R +L        I  +  GNI   VG+ Q    
Sbjct: 394  TPQLAVHNINRNCT---------ERMSRLLLPFADQHVEIPSLTAGNIALTVGLKQTATG 444

Query: 1417 TGTITT-------------FEHAHNMRVMKFSV--------SPVVRVAVEAKNPADLPKL 1533
               +++              E  H  +    S+         PV    +E  + A  P L
Sbjct: 445  DTIVSSKSSALAAARRAGRGEREHGKKREAESLLLAGVEVPEPVFFCTIEPPSVAKQPDL 504

Query: 1534 VEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 1710
               L+RL + DP ++  ++ +SG+ ++ G GELH+EI    ++ ++  +        V+Y
Sbjct: 505  DHALERLQREDPSLKVKLDPDSGQTVLCGMGELHIEIIHDRIKREYG-LETYLGPLQVAY 563

Query: 1711 RETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKY 1890
            RET+                    ++A    D +  D  +  VSA  E++      A   
Sbjct: 564  RETILNS-----------------VRATDTLDRVLGD-KRHLVSAELEVRPAEEPCA--- 602

Query: 1891 EWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRG 2070
               VA+     C G D                L   ++++ +    A  +G L    ++ 
Sbjct: 603  ---VAKIEYADCVGED---------------LLQASREAIESAVHSACLQGPLLGSPVQD 644

Query: 2071 VRFDVHDVTLHADAIHRGGGQIIPTA--RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVG 2244
            V      +TLH+  IH G    + TA   RC+  ++  A  +++EP+  +E+    + + 
Sbjct: 645  VA-----MTLHSLMIHPGTSTTMVTACISRCMQKALKKADKQVLEPLMSLEVTVSREYLS 699

Query: 2245 GIYGVLNRKRGHVFE 2289
             +   L ++RG++ E
Sbjct: 700  PVLADLAQRRGNIQE 714


>ref|NP_613057.2| elongation factor G, mitochondrial precursor [Mus musculus].
          Length = 751

 Score = 97.8 bits (242), Expect = 4e-20
 Identities = 119/495 (24%), Positives = 194/495 (39%), Gaps = 10/495 (2%)
 Frame = +1

Query: 940  LDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELLYEGPPDDEAA 1119
            L S  K+K  +PLL AV+                +LP+P   Q Y      +     +  
Sbjct: 298  LGSALKNKGVQPLLDAVLE---------------YLPNPSEVQNYAILNQNDSKEKTKIL 342

Query: 1120 MGIKSCDPKGPLMMYISKMVPTSDKGRF--YAFGRVFSGLVSTGLKVRIMGPNYTPGKKE 1293
            M  +  D   P +    K+    + GRF    + R + G +  G  +     N   GKK 
Sbjct: 343  MNPQR-DDSHPFVGLAFKL----EAGRFGQLTYVRNYQGELKKGSTIY----NTRTGKKV 393

Query: 1294 DLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFEHAHNMRVMKFS 1473
                  +QR + M    +E +E+V  G+I  L G+D       +  TF +  N  +   S
Sbjct: 394  R-----VQRLVRMHADMMEDVEEVYAGDICALFGID-----CASGDTFTNKDNSDLSMES 443

Query: 1474 V---SPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEI 1641
            +    PV+ +A+   N  DL K  +G+ R  + DP  +   + ES E I++G GELHLEI
Sbjct: 444  IHVPEPVISIAMRPSNKNDLEKFSKGIGRFTREDPTFKVHFDPESKETIVSGMGELHLEI 503

Query: 1642 CLKDLEEDHACIPIKKSDPVVSYRET----VSEESNVLCLSKSPNKHNRLYMKARPFPDG 1809
              + +E ++ C P     P V++RET    V  +      S    +  ++     P P  
Sbjct: 504  YAQRMEREYGC-PCITGKPKVAFRETIVAPVPFDFTHKKQSGGAGQFGKVIGVLEPLP-- 560

Query: 1810 LAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYL 1989
              ED  K E                              F  +  G N+       V+  
Sbjct: 561  -PEDYTKLE------------------------------FSDETFGSNVPKQFVPAVE-- 587

Query: 1990 NEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYAS 2169
                     GF  A ++G L    + G+RF + D   H   +       I      L  +
Sbjct: 588  --------KGFLDACEKGPLSGHKLSGLRFVLQDGAHH--MVDSNEISFIRAGEGALKQA 637

Query: 2170 VLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNE 2349
            +      ++EPI  VE+  P +  G ++  +NR+ G +  +  +     F + A +P+N 
Sbjct: 638  LANGTLCIIEPIMSVEVIAPNEFQGTVFAGINRRHGVITGQDGI--EDYFTLYADVPLNN 695

Query: 2350 SFGFTADLRSNTGGQ 2394
             FG++ +LRS T G+
Sbjct: 696  MFGYSTELRSCTEGK 710



 Score = 61.2 bits (147), Expect = 4e-09
 Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAP-----ARAGETRXTDTRKDEQERRTTXKXTA 195
           RN   +AH D GK T T+      G  A       + G     D+ + E++R  T +  A
Sbjct: 48  RNIGISAHIDSGKTTLTERVLYYTGRIATMHEVKGKDGVGAVMDSMELERQRGITIQSAA 107

Query: 196 XXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXX 375
               ++    D+N            IN+ID+PGHVDF+ EV  ALRV DGA+        
Sbjct: 108 TYTMWK----DIN------------INIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGG 151

Query: 376 XXXQTETVLRQAIAERIKPVLMMNKMDR 459
              QT TV RQ     +  +  +NK+DR
Sbjct: 152 VQCQTMTVSRQMKRYNVPFLTFINKLDR 179


>ref|NP_766299.1| translation factor Guf1, mitochondrial [Mus musculus].
          Length = 651

 Score = 55.1 bits (131), Expect = 3e-07
 Identities = 41/142 (28%), Positives = 58/142 (40%)
 Frame = +1

Query: 31  RNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXXXNY 210
           RN    AH D GK+T  D      G     +  + +  D  + E+ER  T K       Y
Sbjct: 51  RNFSIIAHVDHGKSTLADRLLELTGTIDKTKKNK-QVLDKLQVERERGITVKAQTASLFY 109

Query: 211 ELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT 390
                          G  +L+NLID+PGHVDFS EV+ +L    G L           QT
Sbjct: 110 SFG------------GKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQT 157

Query: 391 ETVLRQAIAERIKPVLMMNKMD 456
                 A   ++  + ++NK+D
Sbjct: 158 VANFFLAFEAQLSVIPVINKID 179


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 102,863,147
Number of extensions: 2970978
Number of successful extensions: 13588
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 13465
Number of HSP's successfully gapped: 17
Length of query: 995
Length of database: 15,617,559
Length adjustment: 111
Effective length of query: 884
Effective length of database: 12,283,563
Effective search space: 10858669692
Effective search space used: 10858669692
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000953
         (2985 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].     1590   0.0  
Alignment   gi|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucl...   582   e-166
Alignment   gi|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   582   e-166
Alignment   gi|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucl...   582   e-166
Alignment   gi|XP_003354054.1| PREDICTED: elongation factor 2-like [Sus scr...   526   e-149
Alignment   gi|XP_003354053.1| PREDICTED: elongation factor 2-like [Sus scr...   526   e-149
Alignment   gi|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding ...   248   1e-65
Alignment   gi|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding ...   248   1e-65
Alignment   gi|XP_001926980.3| PREDICTED: elongation factor Tu GTP-binding ...   179   1e-44
Alignment   gi|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mito...   112   1e-24

>ref|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].
          Length = 858

 Score = 1590 bits (4117), Expect = 0.0
 Identities = 798/849 (93%), Positives = 800/849 (94%)
 Frame = +1

Query: 1    RXXRDKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTT 180
            R   DKKA  RN    AH D GK+T TD+   KAG  A ARAGETR TDTRKDEQER  T
Sbjct: 10   RAIMDKKANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCIT 69

Query: 181  XKXTAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 360
             K TA    YELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGAL   
Sbjct: 70   IKSTAISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 129

Query: 361  XXXXXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVII 540
                    QTETVLRQAIAERIKPVLMMNKMDRA           YQTFQRIVENVNVII
Sbjct: 130  DCVSGVCVQTETVLRQAIAERIKPVLMMNKMDRALLELQLEPEELYQTFQRIVENVNVII 189

Query: 541  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 720
            STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER
Sbjct: 190  STYGEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAER 249

Query: 721  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 900
            AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK
Sbjct: 250  AKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKK 309

Query: 901  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 1080
            EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC
Sbjct: 310  EETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRC 369

Query: 1081 ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 1260
            ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI
Sbjct: 370  ELLYEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRI 429

Query: 1261 MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 1440
            MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE
Sbjct: 430  MGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITTFE 489

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
            HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA
Sbjct: 490  HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 549

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF
Sbjct: 550  GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 609

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
            PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV
Sbjct: 610  PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 669

Query: 1981 QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 2160
            QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL
Sbjct: 670  QYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCL 729

Query: 2161 YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 2340
            YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP
Sbjct: 730  YASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLP 789

Query: 2341 VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP 2520
            VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP
Sbjct: 790  VNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKGLKEGIP 849

Query: 2521 ALDNFLDKL 2547
            ALDNFLDKL
Sbjct: 850  ALDNFLDKL 858


>ref|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            isoform 2 [Sus scrofa].
          Length = 924

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 76   DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 135

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 136  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 184

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 185  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 244

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 245  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 294

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 295  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 344

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 345  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 404

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 405  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 464

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 465  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 524

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 525  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 584

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 585  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 644

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 645  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 704

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 705  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 764

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 765  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 824

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 825  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 884

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 885  FMIKTRRRKGLSEDV-SISKFFD 906


>ref|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Sus
            scrofa].
          Length = 972

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 124  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 183

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 184  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 232

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 233  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 292

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 293  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 342

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 343  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 392

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 393  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 452

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 453  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 512

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 513  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 572

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 573  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 632

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 633  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 692

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 693  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 752

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 753  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 812

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 813  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 872

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 873  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 932

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 933  FMIKTRRRKGLSEDV-SISKFFD 954


>ref|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
            isoform 1 [Sus scrofa].
          Length = 972

 Score =  582 bits (1500), Expect = e-166
 Identities = 325/863 (37%), Positives = 477/863 (55%), Gaps = 20/863 (2%)
 Frame = +1

Query: 13   DKKAXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRX-TDTRKDEQERRTTXKX 189
            D     RN     H   GK    D    +       R  +    TD    EQER    K 
Sbjct: 124  DNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKS 183

Query: 190  TAXXXNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXX 369
            T            +  +     G  +L N++D+PGHV+FS EVTA LR++DG +      
Sbjct: 184  TP-----------VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAA 232

Query: 370  XXXXXQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIISTY 549
                  TE +++ A+ ER+   + +NK+DR            Y   + IV+ VN +IS Y
Sbjct: 233  EGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMY 292

Query: 550  GEGESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGPAERAKK 729
               E     N+++ P+LG V F S  +   FTL  FA++Y   F     G +   E AK+
Sbjct: 293  STDE-----NLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTF-----GDINYQEFAKR 342

Query: 730  VEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMNFKKEET 909
                   LWGD YF+P   KF+K A +   +   R+F + IL+P++K+   ++       
Sbjct: 343  -------LWGDIYFNPKTRKFTKKAPTSSSQ---RSFVEFILEPLYKILAQVVGDVDTSL 392

Query: 910  AKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQKYRCELL 1089
             + +++L I L  E+     +PLL+ V +++       + M   H+PSP    K + E  
Sbjct: 393  PRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHT 452

Query: 1090 YEGPPDDEAAMGIKSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGP 1269
            Y G  D +    +  CDP GPLM + +KM  T D  +F+AFGRV SG +  G  V+++G 
Sbjct: 453  YTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGE 512

Query: 1270 NYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGTITT---FE 1440
            NYT   +ED  +  + R  + + RY   +  VP GN V + GVDQ +VKT TIT     E
Sbjct: 513  NYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNE 572

Query: 1441 HAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGA 1620
             A   R +KF+ + V+++AVE  NP++LPK+++GL+++ KS P +   +EESGEH+I G 
Sbjct: 573  EAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGT 632

Query: 1621 GELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPF 1800
            GEL+L+  + DL + ++ I IK +DPVV++ ETV E S++ C +++PNK N++ M A P 
Sbjct: 633  GELYLDCVMHDLRKMYSEIDIKVADPVVTFCETVVETSSLKCFAETPNKKNKITMIAEPL 692

Query: 1801 PDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGV 1980
              GLAEDI+   V      K+   +   KY+WD+  AR IW FGPD TGPNIL D T   
Sbjct: 693  EKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPS 752

Query: 1981 QY----LNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTA 2148
            +     L  +KDS+V GFQW T+EG LC+E +R V+F + D  +  + +HRGGGQIIPTA
Sbjct: 753  EVDKALLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTA 812

Query: 2149 RRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVK 2328
            RR +Y++ L A PRLMEP Y VE+Q P   V  +Y VL R+RGHV +++ + G+P++ +K
Sbjct: 813  RRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIK 872

Query: 2329 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNT--SRP----------SQ 2472
            A++P  +SFGF  DLR++T GQAF   VF HWQI+PGDP D +   RP           +
Sbjct: 873  AFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLARE 932

Query: 2473 VVAETRKRKGLKEGIPALDNFLD 2541
             + +TR+RKGL E + ++  F D
Sbjct: 933  FMIKTRRRKGLSEDV-SISKFFD 954


>ref|XP_003354054.1| PREDICTED: elongation factor 2-like [Sus scrofa].
          Length = 255

 Score =  526 bits (1355), Expect = e-149
 Identities = 255/255 (100%), Positives = 255/255 (100%)
 Frame = +1

Query: 1783 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 1962
            MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT
Sbjct: 1    MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 60

Query: 1963 DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 2142
            DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP
Sbjct: 61   DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 120

Query: 2143 TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 2322
            TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV
Sbjct: 121  TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 180

Query: 2323 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG 2502
            VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG
Sbjct: 181  VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG 240

Query: 2503 LKEGIPALDNFLDKL 2547
            LKEGIPALDNFLDKL
Sbjct: 241  LKEGIPALDNFLDKL 255


>ref|XP_003354053.1| PREDICTED: elongation factor 2-like [Sus scrofa].
          Length = 255

 Score =  526 bits (1355), Expect = e-149
 Identities = 255/255 (100%), Positives = 255/255 (100%)
 Frame = +1

Query: 1783 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 1962
            MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT
Sbjct: 1    MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 60

Query: 1963 DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 2142
            DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP
Sbjct: 61   DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 120

Query: 2143 TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 2322
            TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV
Sbjct: 121  TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 180

Query: 2323 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG 2502
            VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG
Sbjct: 181  VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG 240

Query: 2503 LKEGIPALDNFLDKL 2547
            LKEGIPALDNFLDKL
Sbjct: 241  LKEGIPALDNFLDKL 255


>ref|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
            1-like isoform 2 [Sus scrofa].
          Length = 1069

 Score =  248 bits (633), Expect = 1e-65
 Identities = 178/640 (27%), Positives = 289/640 (45%), Gaps = 171/640 (26%)
 Frame = +1

Query: 1099 PPDDEAAMGI--KSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            P  D +A+    K  +PKG     + +    +D+  F AF RVFSG+   G K+ ++GP 
Sbjct: 413  PTQDGSALEASPKEEEPKGDEQQVLQE---GNDQESFIAFARVFSGVARRGKKIFVLGPK 469

Query: 1273 YTP---------GKKEDLYLKP---------IQRTILMMGRYVEPIEDVPCGNIVGLVGV 1398
            Y+P         G    L   P         ++   L+MGR +E +E+VP GN++G+ G+
Sbjct: 470  YSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGL 529

Query: 1399 DQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQ 1578
              F++K+ T+ T         + F  +P+VRVAVE K+P+++P+LV+G+K L ++DP VQ
Sbjct: 530  QDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQ 589

Query: 1579 CIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSK- 1755
             +I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++   V  +++ 
Sbjct: 590  ILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEE 649

Query: 1756 -----------------------------------SPNKHNRLYMKARPFPDGLAEDIDK 1830
                                               +PNK   L ++A P P+ + + +++
Sbjct: 650  IGKQQKVAVIHQTKEDQSKIPEGIQVDSXXXXXXTTPNKLATLCVRAMPLPEEVTQILEE 709

Query: 1831 GE--VSARQELK------QRARYLAEKYEWDVAEAR-----------------KIWCFGP 1935
                + + ++L       +  + + +K +  + E +                 +IW FGP
Sbjct: 710  NSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGP 769

Query: 1936 DGTGPNILTDIT-------------KGVQYLNEIKD---SVVAGFQWATKEGALCEENMR 2067
               GPNIL + +             K  Q  N  +D   S+V+GFQ AT  G +CEE + 
Sbjct: 770  RKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLM 829

Query: 2068 GVRFDVHDVTL---------------HADAIHRGGGQ----------------------- 2133
            GV F +    L                +D +  G G+                       
Sbjct: 830  GVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEK 889

Query: 2134 --------------------IIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 2253
                                +I T +     ++     RLM  +Y  +I     V+G +Y
Sbjct: 890  RPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVY 949

Query: 2254 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 2433
             VL+++ G V +E    GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+
Sbjct: 950  AVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEII 1009

Query: 2434 PGDPF----------------DNTSRPSQVVAETRKRKGL 2505
            P DPF                D+ ++  + +   RKRKGL
Sbjct: 1010 PSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1049



 Score =  146 bits (369), Expect = 6e-35
 Identities = 108/358 (30%), Positives = 162/358 (45%), Gaps = 44/358 (12%)
 Frame = +1

Query: 253  DGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKP 432
            D   +LINLIDSPGHVDFSSEV+ A+R+ DG +           QT+ VLRQA  E I+P
Sbjct: 31   DDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRP 90

Query: 433  VLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIIST---------------------- 546
            VL++NK+DR            Y   + I+E +N +  T                      
Sbjct: 91   VLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERVTESQVNPH 150

Query: 547  --YGEG--------ESGPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGE 696
               GE         E     ++   P  G V F S + GW F ++ FA++Y  K      
Sbjct: 151  SEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFGIEHFAKIYSQKTGI--- 207

Query: 697  GQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVF 876
                      + E ++K LWGD Y +    K  K   +   K L   F QLIL  I+ ++
Sbjct: 208  ----------RKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKPL---FVQLILGNIWSLY 254

Query: 877  DAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPS 1053
            DA++   KE+  K++  L +K+ + E +  + K  + A+  +WLP   A+L M+   LPS
Sbjct: 255  DAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLPISQAVLAMVCQKLPS 314

Query: 1054 PVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKGPLMMYISKMVPTSDK 1194
            P+     R E L+  G       PP+ +A       C  +   P+++++SKM     K
Sbjct: 315  PLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTAPVIIFVSKMFAVDAK 372


>ref|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
            1-like isoform 1 [Sus scrofa].
          Length = 1120

 Score =  248 bits (633), Expect = 1e-65
 Identities = 178/640 (27%), Positives = 289/640 (45%), Gaps = 171/640 (26%)
 Frame = +1

Query: 1099 PPDDEAAMGI--KSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            P  D +A+    K  +PKG     + +    +D+  F AF RVFSG+   G K+ ++GP 
Sbjct: 464  PTQDGSALEASPKEEEPKGDEQQVLQE---GNDQESFIAFARVFSGVARRGKKIFVLGPK 520

Query: 1273 YTP---------GKKEDLYLKP---------IQRTILMMGRYVEPIEDVPCGNIVGLVGV 1398
            Y+P         G    L   P         ++   L+MGR +E +E+VP GN++G+ G+
Sbjct: 521  YSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGIGGL 580

Query: 1399 DQFLVKTGTITTFEHAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQ 1578
              F++K+ T+ T         + F  +P+VRVAVE K+P+++P+LV+G+K L ++DP VQ
Sbjct: 581  QDFVLKSATLCTLPSCPPFIPLNFEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQ 640

Query: 1579 CIIEESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVSEESNVLCLSK- 1755
             +I+E+GEH++  AGE+HL+ CL DL+E  A I I  S+P++ +RET+++   V  +++ 
Sbjct: 641  ILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIQISVSEPIIPFRETITKPPKVDMVNEE 700

Query: 1756 -----------------------------------SPNKHNRLYMKARPFPDGLAEDIDK 1830
                                               +PNK   L ++A P P+ + + +++
Sbjct: 701  IGKQQKVAVIHQTKEDQSKIPEGIQVDSXXXXXXTTPNKLATLCVRAMPLPEEVTQILEE 760

Query: 1831 GE--VSARQELK------QRARYLAEKYEWDVAEAR-----------------KIWCFGP 1935
                + + ++L       +  + + +K +  + E +                 +IW FGP
Sbjct: 761  NSDLIRSMEQLTSSLNEGKNTQVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGP 820

Query: 1936 DGTGPNILTDIT-------------KGVQYLNEIKD---SVVAGFQWATKEGALCEENMR 2067
               GPNIL + +             K  Q  N  +D   S+V+GFQ AT  G +CEE + 
Sbjct: 821  RKCGPNILVNKSEDFQNSVWTGPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLM 880

Query: 2068 GVRFDVHDVTL---------------HADAIHRGGGQ----------------------- 2133
            GV F +    L                +D +  G G+                       
Sbjct: 881  GVCFVLEKWDLSKFEEQTASDKQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEK 940

Query: 2134 --------------------IIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 2253
                                +I T +     ++     RLM  +Y  +I     V+G +Y
Sbjct: 941  RPSQKGESSLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVY 1000

Query: 2254 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 2433
             VL+++ G V +E    GT MF++KA LPV ESFGF  ++R  T G A PQ VF HW+I+
Sbjct: 1001 AVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEII 1060

Query: 2434 PGDPF----------------DNTSRPSQVVAETRKRKGL 2505
            P DPF                D+ ++  + +   RKRKGL
Sbjct: 1061 PSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100



 Score =  179 bits (453), Expect = 1e-44
 Identities = 134/435 (30%), Positives = 195/435 (44%), Gaps = 44/435 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y            +KD   +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHY------------AKDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIIST----- 546
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 547  -------------------YGEG--------ESGPMGNIMIDPVLGTVGFGSGLHGWAFT 645
                                GE         E     ++   P  G V F S + GW F 
Sbjct: 185  VLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA++Y  K                + E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFAKIYSQKTGI-------------RKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL  I+ ++DA++   KE+  K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E L+  G       PP+ +A       C  +   
Sbjct: 349  LPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKMVPTSDK 1194
            P+++++SKM     K
Sbjct: 409  PVIIFVSKMFAVDAK 423


>ref|XP_001926980.3| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
            1 [Sus scrofa].
          Length = 665

 Score =  179 bits (453), Expect = 1e-44
 Identities = 134/435 (30%), Positives = 195/435 (44%), Gaps = 44/435 (10%)
 Frame = +1

Query: 22   AXXRNRXATAHEDQGKATXTDTRASKAGXNAPARAGETRXTDTRKDEQERRTTXKXTAXX 201
            A  RN    AH D GK T  D   S  G  +   AG+ R  D+R+DEQ R  T K +A  
Sbjct: 17   ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAIS 76

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +Y            +KD   +LINLIDSPGHVDFSSEV+ A+R+ DG +          
Sbjct: 77   LHY------------AKDDEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVC 124

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVNVIIST----- 546
             QT+ VLRQA  E I+PVL++NK+DR            Y   + I+E +N +  T     
Sbjct: 125  PQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSK 184

Query: 547  -------------------YGEG--------ESGPMGNIMIDPVLGTVGFGSGLHGWAFT 645
                                GE         E     ++   P  G V F S + GW F 
Sbjct: 185  VLEERAERVTESQVNPHSEQGEQVYDWSTGLEDTDDSHLYFSPDQGNVVFTSAIDGWGFG 244

Query: 646  LKQFAEMYVAKFAAKGEGQLGPAERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKK 825
            ++ FA++Y  K                + E ++K LWGD Y +    K  K   +   K 
Sbjct: 245  IEHFAKIYSQKTGI-------------RKEVLLKTLWGDYYINMKAKKIMKVDQAKGKKP 291

Query: 826  LPRTFCQLILDPIFKVFDAIMNFKKEETAKLIEKLDIKLDS-EDKDKEGKPLLKAVMRRW 1002
            L   F QLIL  I+ ++DA++   KE+  K++  L +K+ + E +  + K  + A+  +W
Sbjct: 292  L---FVQLILGNIWSLYDAVLKKDKEKIDKIVTSLGLKIGAREARHSDPKVQINAICSQW 348

Query: 1003 LPAGDALLQMITIHLPSPVTAQKYRCE-LLYEG-------PPDDEA-AMGIKSC--DPKG 1149
            LP   A+L M+   LPSP+     R E L+  G       PP+ +A       C  +   
Sbjct: 349  LPISQAVLAMVCQKLPSPLDITAERVEKLMCAGSQTFDSLPPETQALKAAFMKCGSEDTA 408

Query: 1150 PLMMYISKMVPTSDK 1194
            P+++++SKM     K
Sbjct: 409  PVIIFVSKMFAVDAK 423



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
 Frame = +1

Query: 1099 PPDDEAAMGI--KSCDPKGPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTGLKVRIMGPN 1272
            P  D +A+    K  +PKG     + +    +D+  F AF RVFSG+   G K+ ++GP 
Sbjct: 464  PTQDGSALEASPKEEEPKGDEQQVLQE---GNDQESFIAFARVFSGVARRGKKIFVLGPK 520

Query: 1273 YTP---------GKKEDLYLKP---------IQRTILMMGRYVEPIEDVPCGNIVGLV 1392
            Y+P         G    L   P         ++   L+MGR +E +E+VP GN++G +
Sbjct: 521  YSPLEFLQRVPLGFSAPLDGLPPVPHMACCTLENLYLLMGRELEDLEEVPPGNVLGFI 578


>ref|XP_003123750.1| PREDICTED: ribosome-releasing factor 2, mitochondrial-like [Sus
            scrofa].
          Length = 776

 Score =  112 bits (280), Expect = 1e-24
 Identities = 191/858 (22%), Positives = 327/858 (38%), Gaps = 45/858 (5%)
 Frame = +1

Query: 31   RNRXATAHEDQGKATXTDTRASKAGXN---APARAGETRXTDTRKDEQERRTTXKXTAXX 201
            RN    AH D GK T T+     +G          G+T  TD    E+ER  T +  A  
Sbjct: 70   RNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSAAVT 128

Query: 202  XNYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXX 381
             +++                G+ INLID+PGHVDF+ EV   LRV DGA+          
Sbjct: 129  FDWK----------------GYRINLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVE 172

Query: 382  XQTETVLRQAIAERIKPVLMMNKMDRAXXXXXXXXXXXYQTFQRIVENVN--------VI 537
             QT TV RQA   +I  +  +NKMD+              +F   VE++         ++
Sbjct: 173  AQTLTVWRQADKHKIPRICFLNKMDKTG-----------ASFNYAVESIREKLKAKPLLL 221

Query: 538  ISTYGEGES--GPMGNIMIDPVLGTVGFGSGLHGWAFTLKQFAEMYVAKFAAKGEGQLGP 711
                GE ++  G +  +  + +L  +    G +     L + ++  + K   +    L  
Sbjct: 222  QLPIGEAKTFKGVVDVVNKEKLLWNLNSDDGKNFERKPLLEVSDPQLLKETTEARNAL-- 279

Query: 712  AERAKKVEDMMKKLWGDRYFDPANGKFSKSATSPDGKKLPRTFCQLILDPIFKVFDAIMN 891
                ++V D+      D + +   G+FS++                 L P  K+  AI  
Sbjct: 280  ---IEQVADL-----DDEFANLVLGEFSEN---------------FDLLPAEKLQTAIHR 316

Query: 892  FKKEETAKLIEKLDIKLDSEDKDKEGKPLLKAVMRRWLPAGDALLQMITIHLPSPVTAQK 1071
                +TA     + +   S  K+K  +PLL A               IT++LPSP   + 
Sbjct: 317  VTLAQTA-----VPVLCGSALKNKGVQPLLDA---------------ITMYLPSP-EERN 355

Query: 1072 YRCELLYEGPPDDEAAMGIKSCDPK--GPLMMYISKMVPTSDKGRFYAFGRVFSGLVSTG 1245
            Y     Y+G   D  A+  K    K  GPL+                 F R++SG++   
Sbjct: 356  YEFLQWYKG---DLCALAFKVLHDKQRGPLV-----------------FMRIYSGMIKPQ 395

Query: 1246 LKVRIMGPNYTPGKKEDLYLKPIQRTILMMGRYVEPIEDVPCGNIVGLVGVDQFLVKTGT 1425
            L +  +  N T         + I R +L        I  +  GNI   VG+         
Sbjct: 396  LAIHNINGNCT---------ERISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATGDTI 446

Query: 1426 ITT----------------FEHAHNMRVMKFSVS------PVVRVAVEAKNPADLPKLVE 1539
            +++                 +H  N    +  ++      PV    +E  + A  P L  
Sbjct: 447  VSSKSSALAAARRAERKGEKKHRENNEAERLLLAGVEIPEPVFFCTIEPPSVAKQPDLDH 506

Query: 1540 GLKRLAKSDPMVQCIIE-ESGEHIIAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRE 1716
             LK L + DP ++  ++ +SG+ I+ G GELH+EI    ++ ++  +        V+YRE
Sbjct: 507  ALKCLQREDPSLKVKLDPDSGQTILCGMGELHIEIIHDRIKREYG-LETYLGPLQVAYRE 565

Query: 1717 TVSEE---SNVLCLSKSPNKH-NRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAE 1884
            T+      ++ L  +    +H   + ++A+P      + +     S  Q+L Q +     
Sbjct: 566  TILNSVRATDALDRTLGDKRHLVTVELEAKPLETSSLQPVIDYAQSVTQDLSQAS----- 620

Query: 1885 KYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENM 2064
                                                  +++V  G   A  +G L    +
Sbjct: 621  --------------------------------------QEAVENGIHSACLQGPLLGSPI 642

Query: 2065 RGVRFDVHDVTLHADAIHRGGGQIIPTA--RRCLYASVLTAQPRLMEPIYLVEIQCPEQV 2238
            + V      VTLH+  IH G    + +A   RC+  ++  A  +++EP+  +E+  P   
Sbjct: 643  QDVA-----VTLHSLVIHPGTSTTMISACVSRCMQKALKKADKQILEPLMNLEVTVPRDY 697

Query: 2239 VGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 2418
            +  +   L ++RG++ +E Q       V+  ++P+ E  G++  LR+ T G A       
Sbjct: 698  LSPVLADLAQRRGNI-QEIQTRQDNKVVI-GFVPLAEIMGYSTVLRTLTSGSATFALELS 755

Query: 2419 HWQIL-PGDPFDNTSRPS 2469
            ++Q + P D     SR S
Sbjct: 756  NYQAMNPQDQSTLLSRRS 773


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 77,154,767
Number of extensions: 2301038
Number of successful extensions: 10260
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 10175
Number of HSP's successfully gapped: 24
Length of query: 995
Length of database: 11,343,932
Length adjustment: 109
Effective length of query: 886
Effective length of database: 8,630,159
Effective search space: 7646320874
Effective search space used: 7646320874
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000953
         (2985 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                        1041   0.0  
Sscrofa_Chr06                                                         198   1e-47
gb|GL894470.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   123   6e-25
Sscrofa_Chr09                                                          96   1e-16
Sscrofa_Chr01                                                          78   3e-11

>Sscrofa_Chr02 
||          Length = 162569375

 Score = 1041 bits (525), Expect = 0.0
 Identities = 601/631 (95%), Gaps = 2/631 (0%)
 Strand = Plus / Plus

                                                                            
Query: 2356     ggctttactgctgacctgagatccaacacaggcggccaggcctttccccagtgtgtgttc 2415
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300254 ggctttactgctgacctgagatccaacacaggcggccaggcctttccccagtgtgtgttc 75300313

                                                                            
Query: 2416     gaccactggcagatcctgcccggggatcccttcgacaacaccagtcgccccagccaggtg 2475
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300314 gaccactggcagatcctgcccggggatcccttcgacaacaccagtcgccccagccaggtg 75300373

                                                                            
Query: 2476     gtggcagagacacgcaagcgcaaaggcctgaaggaaggtattccggccctggacaacttc 2535
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300374 gtggcagagacacgcaagcgcaaaggcctgaaggaaggtattccggccctggacaacttc 75300433

                                                                            
Query: 2536     ctggacaaattgtaggcggcttctcagcagcctgctgcccagtgggactggcgcagcccc 2595
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300434 ctggacaaattgtaggcggcttctcagcagcctgctgcccagtgggactggcgcagcccc 75300493

                                                                            
Query: 2596     cgcgcccagggacaggtgaccacagcaacaagccccccacattctccacgacactttgag 2655
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300494 cgcgcccagggacaggtgaccacagcaacaagccccccacattctccacgacactttgag 75300553

                                                                            
Query: 2656     actgtccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccatca 2715
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300554 actgtccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccatca 75300613

                                                                            
Query: 2716     ctcaacatgaacacttgatgctgtttctttcaatatttatttgtagatttcagaggcaac 2775
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 75300614 ctcaacatgaacacttgatgccgtttctttcaatatttatttgtagatttcagaggcaac 75300673

                                                                            
Query: 2776     agaaatgccctcacagcagggacttatctggctgttgggggtgagggaagggatggggga 2835
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300674 agaaatgccctcacagcagggacttatctggctgttgggggtgagggaagggatggggga 75300733

                                                                            
Query: 2836     cacccaacactttgtttcataagaggaaaattcatatcccnnnnnnnnnnnnnnnnnnnn 2895
                |||||||||||||||||||||||||||||||||||||| |                    
Sbjct: 75300734 cacccaacactttgtttcataagaggaaaattcatatc-caaaaaaaaaagttgaaaata 75300792

                                                                            
Query: 2896     nncgcattaagaggtttatttgggtaaatggcccataatggattttccttcat-aagggg 2954
                  ||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct: 75300793 aacgcattaagaggtttatttgggtaaatggcccatagtggattttcctccataaagggg 75300852

                                               
Query: 2955     gaggaaaacagcaggtagatgttctctttgg 2985
                |||||||   |||||||||||||||||||||
Sbjct: 75300853 gaggaaacaggcaggtagatgttctctttgg 75300883



 Score =  708 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1685     agaaatctgacccagttgtctcttaccgtgagactgtcagtgaggagtcaaatgtgctct 1744
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298694 agaaatctgacccagttgtctcttaccgtgagactgtcagtgaggagtcaaatgtgctct 75298753

                                                                            
Query: 1745     gcttgtctaagtcccccaacaagcacaacaggctatacatgaaagcaaggcctttccctg 1804
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298754 gcttgtctaagtcccccaacaagcacaacaggctatacatgaaagcaaggcctttccctg 75298813

                                                                            
Query: 1805     acggcctggctgaagacatcgacaagggagaggtgtctgcccgccaggaactcaagcagc 1864
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298814 acggcctggctgaagacatcgacaagggagaggtgtctgcccgccaggaactcaagcagc 75298873

                                                                            
Query: 1865     gggcccgctacctagctgagaagtacgagtgggatgtggctgaggcccgcaagatctggt 1924
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298874 gggcccgctacctagctgagaagtacgagtgggatgtggctgaggcccgcaagatctggt 75298933

                                                                            
Query: 1925     gctttggccctgatggcactggccccaacatcctcactgacatcaccaagggtgtgcagt 1984
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298934 gctttggccctgatggcactggccccaacatcctcactgacatcaccaagggtgtgcagt 75298993

                                                                         
Query: 1985     acctcaacgagatcaaggacagcgtggtggctggcttccagtgggccaccaaagagg 2041
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298994 acctcaacgagatcaaggacagcgtggtggctggcttccagtgggccaccaaagagg 75299050



 Score =  517 bits (261), Expect = e-143
 Identities = 261/261 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1318     aggacaatccttatgatgggccgctacgtggagcccattgaggacgtgccttgtgggaac 1377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75296556 aggacaatccttatgatgggccgctacgtggagcccattgaggacgtgccttgtgggaac 75296615

                                                                            
Query: 1378     atcgtgggcttggtgggcgtggaccagttcctggtgaagacaggaaccatcaccaccttt 1437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75296616 atcgtgggcttggtgggcgtggaccagttcctggtgaagacaggaaccatcaccaccttt 75296675

                                                                            
Query: 1438     gagcacgcccacaacatgcgagtgatgaagtttagcgtgagccctgtcgtcagggtcgct 1497
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75296676 gagcacgcccacaacatgcgagtgatgaagtttagcgtgagccctgtcgtcagggtcgct 75296735

                                                                            
Query: 1498     gtggaggccaagaacccggctgacctgcccaagctggtggagggcctgaagcggctggcc 1557
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75296736 gtggaggccaagaacccggctgacctgcccaagctggtggagggcctgaagcggctggcc 75296795

                                     
Query: 1558     aagtcagatcccatggtgcag 1578
                |||||||||||||||||||||
Sbjct: 75296796 aagtcagatcccatggtgcag 75296816



 Score =  426 bits (215), Expect = e-116
 Identities = 215/215 (100%)
 Strand = Plus / Plus

                                                                            
Query: 371      caggtgtgtgcgtgcagacagagacagtgctgcgccaggctattgctgagcgcatcaagc 430
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75293363 caggtgtgtgcgtgcagacagagacagtgctgcgccaggctattgctgagcgcatcaagc 75293422

                                                                            
Query: 431      ctgtgctgatgatgaacaagatggaccgggccctgctcgagctgcagctggagcccgagg 490
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75293423 ctgtgctgatgatgaacaagatggaccgggccctgctcgagctgcagctggagcccgagg 75293482

                                                                            
Query: 491      agctctaccagaccttccagcgcattgtggagaatgtcaatgtcatcatttccacctatg 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75293483 agctctaccagaccttccagcgcattgtggagaatgtcaatgtcatcatttccacctatg 75293542

                                                   
Query: 551      gggagggcgagagtggccccatgggcaacatcatg 585
                |||||||||||||||||||||||||||||||||||
Sbjct: 75293543 gggagggcgagagtggccccatgggcaacatcatg 75293577



 Score =  392 bits (198), Expect = e-106
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1123     ggcattaaaagctgtgaccccaaaggcccacttatgatgtacatttccaaaatggtgccg 1182
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295739 ggcattaaaagctgtgaccccaaaggcccacttatgatgtacatttccaaaatggtgccg 75295798

                                                                            
Query: 1183     acctccgacaaaggtcggttctatgccttcggccgggtcttctcagggctggtgtctacc 1242
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295799 acctccgacaaaggtcggttctatgccttcggccgggtcttctcagggctggtgtctacc 75295858

                                                                            
Query: 1243     ggtctgaaggtcaggatcatggggcccaactacacccctgggaagaaggaggacctatac 1302
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295859 ggtctgaaggtcaggatcatggggcccaactacacccctgggaagaaggaggacctatac 75295918

                                  
Query: 1303     ctgaagccaatccagagg 1320
                ||||||||||||||||||
Sbjct: 75295919 ctgaagccaatccagagg 75295936



 Score =  367 bits (185), Expect = 2e-98
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2039     agggggcgctgtgtgaggagaacatgcggggtgtgcgatttgatgtccacgatgtgacac 2098
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299302 agggggcgctgtgtgaggagaacatgcggggtgtgcgatttgatgtccacgatgtgacac 75299361

                                                                            
Query: 2099     tgcacgccgacgccatccaccgtggtggtggccagatcatccctactgcacggcgctgcc 2158
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299362 tgcacgccgacgccatccaccgtggtggtggccagatcatccctactgcacggcgctgcc 75299421

                                                                            
Query: 2159     tttatgccagtgtgctgactgcccagcccaggctcatggagcccatctaccttgtggaga 2218
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299422 tttatgccagtgtgctgactgcccagcccaggctcatggagcccatctaccttgtggaga 75299481

                     
Query: 2219     tccag 2223
                |||||
Sbjct: 75299482 tccag 75299486



 Score =  361 bits (182), Expect = 1e-96
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                            
Query: 585      gattgatcctgttcttggtactgttggctttgggtctggtctccacggttgggccttcac 644
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75294046 gattgatcctgttcttggtactgttggctttgggtctggtctccacggttgggccttcac 75294105

                                                                            
Query: 645      cctgaagcagtttgcagagatgtacgttgccaagtttgccgccaagggcgagggccagtt 704
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75294106 cctgaagcagtttgcagagatgtacgttgccaagtttgccgccaagggcgagggccagtt 75294165

                                                                            
Query: 705      ggggcctgctgagcgggccaagaaggtggaggacatgatgaaaaagctatggggagaccg 764
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75294166 ggggcctgctgagcgggccaagaaggtggaggacatgatgaaaaagctatggggagaccg 75294225

                  
Query: 765      gt 766
                ||
Sbjct: 75294226 gt 75294227



 Score =  335 bits (169), Expect = 8e-89
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                            
Query: 207      ctatgagctctcagagaatgacttgaatttcatcaagcagagcaaagatggctctggctt 266
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75293122 ctatgagctctcagagaatgacttgaatttcatcaagcagagcaaagatggctctggctt 75293181

                                                                            
Query: 267      cctcatcaacctcattgattcacctgggcacgtggacttctcctcagaagtgacagcagc 326
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75293182 cctcatcaacctcattgattcacctgggcacgtggacttctcctcagaagtgacagcagc 75293241

                                                                 
Query: 327      tctccgtgtcaccgatggtgccttggtggtggtggactgtgtgtcaggt 375
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75293242 tctccgtgtcaccgatggtgccttggtggtggtggactgtgtgtcaggt 75293290



 Score =  281 bits (142), Expect = 1e-72
 Identities = 142/142 (100%)
 Strand = Plus / Plus

                                                                            
Query: 983      aggctgtgatgcgccgctggctgcccgccggggatgcgctgctacagatgatcaccatcc 1042
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295472 aggctgtgatgcgccgctggctgcccgccggggatgcgctgctacagatgatcaccatcc 75295531

                                                                            
Query: 1043     acttgccctcccccgtgacggcccagaagtaccgctgtgagctcctgtatgaggggcctc 1102
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295532 acttgccctcccccgtgacggcccagaagtaccgctgtgagctcctgtatgaggggcctc 75295591

                                      
Query: 1103     cggacgacgaggcagccatggg 1124
                ||||||||||||||||||||||
Sbjct: 75295592 cggacgacgaggcagccatggg 75295613



 Score =  272 bits (137), Expect = 1e-69
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2221     cagtgtccagaacaagtggttggtggcatttatggtgtcctgaacaggaagcggggccac 2280
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299566 cagtgtccagaacaagtggttggtggcatttatggtgtcctgaacaggaagcggggccac 75299625

                                                                            
Query: 2281     gtctttgaggagtcccaggtggctggtacccccatgtttgttgtgaaggcttacttgcct 2340
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299626 gtctttgaggagtcccaggtggctggtacccccatgtttgttgtgaaggcttacttgcct 75299685

                                 
Query: 2341     gtcaatgaatcctttgg 2357
                |||||||||||||||||
Sbjct: 75299686 gtcaatgaatcctttgg 75299702



 Score =  232 bits (117), Expect = 9e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 869      aggtgtttgatgccatcatgaatttcaagaaagaggagacagcaaaactgattgaaaaac 928
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295097 aggtgtttgatgccatcatgaatttcaagaaagaggagacagcaaaactgattgaaaaac 75295156

                                                                         
Query: 929      tagacatcaaattggacagtgaagataaggacaaagaaggcaaaccactgctgaagg 985
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75295157 tagacatcaaattggacagtgaagataaggacaaagaaggcaaaccactgctgaagg 75295213



 Score =  224 bits (113), Expect = 2e-55
 Identities = 198/225 (88%), Gaps = 1/225 (0%)
 Strand = Plus / Minus

                                                                             
Query: 2599      gcccagggacaggtgaccacagcaacaagccccccacattctccacgacactttgagact 2658
                 ||||||||||||||||||| ||||||||  |||| ||||| || | ||||| |  |||||
Sbjct: 104659505 gcccagggacaggtgaccagagcaacaaaacccctacattttcaatgacacctcaagact 104659446

                                                                             
Query: 2659      gtccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccatcactc 2718
                 |||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||  |||
Sbjct: 104659445 gtccagactcagtaatgctctgcctgacaggtttctggggtccactccatgccattgctc 104659386

                                                                             
Query: 2719      aacatgaacacttgatgctgtttctttcaatatttatttgtagatttcagaggcaacaga 2778
                 | ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 104659385 agcatgaacacttgatgccatttctttcaatatttatttgtagatttcacaggcaacaga 104659326

                                                              
Query: 2779      aatgccctcacagcagggacttatctggctgttgggggtgaggga 2823
                 | || ||||||  ||||| |||||||||||| ||||| |||||||
Sbjct: 104659325 agtg-cctcaccacaggggcttatctggctggtggggatgaggga 104659282



 Score =  220 bits (111), Expect = 3e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 764      ggtactttgatccagccaatggtaaattcagcaagtcagccaccagccctgatggcaaga 823
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75294314 ggtactttgatccagccaatggtaaattcagcaagtcagccaccagccctgatggcaaga 75294373

                                                                   
Query: 824      agctgccgaggaccttctgccagctcatcttggaccctatcttcaaggtgt 874
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75294374 agctgccgaggaccttctgccagctcatcttggaccctatcttcaaggtgt 75294424



 Score =  220 bits (111), Expect = 3e-54
 Identities = 111/111 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1576     cagtgcatcattgaggagtctggggagcacatcatcgcaggggctggagagctgcaccta 1635
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75297259 cagtgcatcattgaggagtctggggagcacatcatcgcaggggctggagagctgcaccta 75297318

                                                                   
Query: 1636     gagatctgcctgaaggacctggaggaggaccacgcctgcattcctatcaag 1686
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75297319 gagatctgcctgaaggacctggaggaggaccacgcctgcattcctatcaag 75297369



 Score =  113 bits (57), Expect = 6e-22
 Identities = 155/192 (80%)
 Strand = Plus / Plus

                                                                            
Query: 1        cgggncancagggacaagaaggcnaananccgaaacaggnccgccacagcccacgaggac 60
                |||| || || |||||||||||| || | |||||||| | ||| ||  ||||||| ||||
Sbjct: 75292034 cgggccatcatggacaagaaggctaatatccgaaacatgtccgtcattgcccacgtggac 75292093

                                                                            
Query: 61       cagggcaaggccacacngacggacacaagggcgagcaaggccggcancaacgcccccgcc 120
                || |||||| |||| | ||||||| ||  || | ||||||| || | || |||| |||||
Sbjct: 75292094 catggcaagtccactctgacggactcattggtgtgcaaggctggtatcatcgcctccgcc 75292153

                                                                            
Query: 121      cgggcaggggagacccgcnncacagacacccggaaggacgagcaggaacgncgcaccacc 180
                ||||| ||||||||||||  ||| |||||||||||||| |||||||||||  ||| ||| 
Sbjct: 75292154 cgggctggggagacccgcttcactgacacccggaaggatgagcaggaacgttgcatcact 75292213

                            
Query: 181      ancaaancaacg 192
                | |||| |||||
Sbjct: 75292214 atcaaatcaacg 75292225



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 64/73 (87%), Gaps = 1/73 (1%)
 Strand = Plus / Minus

                                                                             
Query: 2914      tttgggtaaatggcccataatggattttccttcataagggggaggaaaac-agcaggtag 2972
                 ||||||||||||||||||| | |||||||||||| || ||||   ||||| |||||||| 
Sbjct: 104659186 tttgggtaaatggcccatagttgattttccttcagaaaggggcaaaaaacaagcaggtaa 104659127

                              
Query: 2973      atgttctctttgg 2985
                 |||||||||||||
Sbjct: 104659126 atgttctctttgg 104659114


>Sscrofa_Chr06 
||          Length = 157765593

 Score =  198 bits (100), Expect = 1e-47
 Identities = 183/208 (87%), Gaps = 2/208 (0%)
 Strand = Plus / Plus

                                                                             
Query: 2600      cccagggacaggtgaccacagcaacaagccccccacattctccacgacactttgagactg 2659
                 ||||||| ||||||||||||||||||||||||| || |||||||  |||| |  ||||||
Sbjct: 135080525 cccaggggcaggtgaccacagcaacaagccccc-actttctccaa-acacctcaagactg 135080582

                                                                             
Query: 2660      tccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccatcactca 2719
                  |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||
Sbjct: 135080583 cccagactcagcaatgctctgcttgacaggtttctggggcccactctgtgccatcactca 135080642

                                                                             
Query: 2720      acatgaacacttgatgctgtttctttcaatatttatttgtagatttcagaggcaacagaa 2779
                 ||| ||||||||||||   |||||||||||||||||||  ||||||||||||||||||||
Sbjct: 135080643 acaagaacacttgatgtaatttctttcaatatttatttccagatttcagaggcaacagaa 135080702

                                             
Query: 2780      atgccctcacagcagggacttatctggc 2807
                  | || |||||||||  | |||||||||
Sbjct: 135080703 gtaccttcacagcagatatttatctggc 135080730



 Score =  198 bits (100), Expect = 1e-47
 Identities = 183/208 (87%), Gaps = 2/208 (0%)
 Strand = Plus / Minus

                                                                             
Query: 2600      cccagggacaggtgaccacagcaacaagccccccacattctccacgacactttgagactg 2659
                 ||||||| ||||||||||||||||||||||||| || |||||||  |||| |  ||||||
Sbjct: 135248707 cccaggggcaggtgaccacagcaacaagccccc-actttctccaa-acacctcaagactg 135248650

                                                                             
Query: 2660      tccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccatcactca 2719
                  |||||||||| |||||||||| ||||||||||||||||||||||  |||||||||||||
Sbjct: 135248649 cccagactcagcaatgctctgcttgacaggtttctggggcccactctgtgccatcactca 135248590

                                                                             
Query: 2720      acatgaacacttgatgctgtttctttcaatatttatttgtagatttcagaggcaacagaa 2779
                 ||| ||||||||||||   |||||||||||||||||||  ||||||||||||||||||||
Sbjct: 135248589 acaagaacacttgatgtaatttctttcaatatttatttccagatttcagaggcaacagaa 135248530

                                             
Query: 2780      atgccctcacagcagggacttatctggc 2807
                  | || |||||||||  | |||||||||
Sbjct: 135248529 gtaccttcacagcagatatttatctggc 135248502


>gb|GL894470.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3131
          Length = 45412

 Score =  123 bits (62), Expect = 6e-25
 Identities = 176/214 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1372 gggaacatcgtgggcttggtgggcgtggaccagttcctggtgaagacaggaaccatcacc 1431
            ||||||||| ||||| ||||||| || | ||||||| |||| |||||||  ||||| |||
Sbjct: 3559 gggaacatcatgggcctggtgggtgtcgtccagttcttggtaaagacagtcaccataacc 3500

                                                                        
Query: 1432 acctttgagcacgcccacaacatgcgagtgatgaagtttagcgtgagccctgtcgtcagg 1491
            ||||| ||||| |||||| ||  | | |||||||||||||| || | ||  |||||||||
Sbjct: 3499 accttcgagcatgcccactaccagtgtgtgatgaagtttagtgtaaacctggtcgtcagg 3440

                                                                        
Query: 1492 gtcgctgtggaggccaagaacccggctgacctgcccaagctggtggagggcctgaagcgg 1551
             || ||||||| ||||||| ||| ||||| |||| | |||||||| |||| |||||| ||
Sbjct: 3439 atccctgtggaagccaagaccccagctgaactgctctagctggtgaaggggctgaagagg 3380

                                              
Query: 1552 ctggccaagtcagatcccatggtgcagtgcatca 1585
            | |||||||| |||| ||| || |||||||||||
Sbjct: 3379 caggccaagttagattccagggggcagtgcatca 3346


>Sscrofa_Chr09 
||          Length = 153670197

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 76/84 (90%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                             
Query: 2903      taagaggtttatttgggtaaatggcccataatggattttccttcat-aagggggaggaaa 2961
                 |||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct: 119180133 taagaggtttatttgggtaaatggcccatagtggattttcctccataaagggggaagaaa 119180074

                                         
Query: 2962      acagcaggtagatgttctctttgg 2985
                    | |||||||||||||||||||
Sbjct: 119180073 ctggtaggtagatgttctctttgg 119180050


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                             
Query: 2725      aacacttgatgctgtttctttcaatatttatttgtagatttcagaggcaacagaaatgcc 2784
                 |||||||||||||||||||||  ||||||||||  ||||| ||||| ||| ||| |||||
Sbjct: 221246206 aacacttgatgctgtttcttttgatatttatttcaagattacagagacaatagagatgcc 221246147

                                        
Query: 2785      ctcacagcagggacttatctggc 2807
                 ||  |||||||||||||| ||||
Sbjct: 221246146 cttgcagcagggacttatttggc 221246124



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 35/36 (97%)
 Strand = Plus / Minus

                                                    
Query: 2760     agatttcagaggcaacagaaatgccctcacagcagg 2795
                |||||||||||||| |||||||||||||||||||||
Sbjct: 38283174 agatttcagaggcagcagaaatgccctcacagcagg 38283139



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                             
Query: 2201      ccatctaccttgtggagatccagtgtccagaacaagtggttggtggcatttatggtgtcc 2260
                 |||||||||| |||| ||||||||||||| | |||| ||| |||||||| ||  ||||||
Sbjct: 221246667 ccatctacctggtggggatccagtgtccacagcaagaggtgggtggcatctacagtgtcc 221246608

                                
Query: 2261      tgaacaggaagcggg 2275
                  || |||||||||||
Sbjct: 221246607 cgagcaggaagcggg 221246593


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 80,346,487
Number of extensions: 526
Number of successful extensions: 526
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 520
Number of HSP's successfully gapped: 24
Length of query: 2985
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2963
Effective length of database: 2,808,408,574
Effective search space: 8321314604762
Effective search space used: 8321314604762
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)