Animal-Genome cDNA 20110601C-000959


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000959
         (1371 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001071303.1| cathepsin Z precursor [Bos taurus].               541   e-154
Alignment   gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].              110   4e-24
Alignment   gi|NP_001028787.1| cathepsin S precursor [Bos taurus].                97   3e-20
Alignment   gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B...    95   2e-19
Alignment   gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].                  95   2e-19
Alignment   gi|NP_776456.1| cathepsin B precursor [Bos taurus].                   91   3e-18
Alignment   gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].            86   6e-17
Alignment   gi|NP_001029607.1| cathepsin K [Bos taurus].                          82   1e-15
Alignment   gi|NP_001030279.1| tubulointerstitial nephritis antigen [Bos ta...    80   6e-15
Alignment   gi|NP_001068884.1| cathepsin F [Bos taurus].                          75   1e-13

>ref|NP_001071303.1| cathepsin Z precursor [Bos taurus].
          Length = 304

 Score =  541 bits (1393), Expect = e-154
 Identities = 244/274 (89%), Positives = 254/274 (92%)
 Frame = +2

Query: 167 HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI 346
           HFRPG  CYRPLRGD+ TQLG RTYPRPHEYLSPSDLP+SWDWRNVNGVNYASVTRNQHI
Sbjct: 27  HFRPGRGCYRPLRGDRLTQLGRRTYPRPHEYLSPSDLPKSWDWRNVNGVNYASVTRNQHI 86

Query: 347 PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH 526
           PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCG+AGSCEGG+DLPVW YAH
Sbjct: 87  PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGDAGSCEGGNDLPVWEYAH 146

Query: 527 RHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE 706
           RHGIPDETCNNYQAKDQ CDKFNQCGTCTEFKECHVI+NYTLWKVGDYGS+SGREKMMAE
Sbjct: 147 RHGIPDETCNNYQAKDQECDKFNQCGTCTEFKECHVIKNYTLWKVGDYGSLSGREKMMAE 206

Query: 707 IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGE 886
           IY NGPISCGIMATEKMSNYTGGIY+EY DQA+INHIVSVAGWGVS G EYW VRNSWGE
Sbjct: 207 IYTNGPISCGIMATEKMSNYTGGIYSEYNDQAFINHIVSVAGWGVSDGMEYWIVRNSWGE 266

Query: 887 PWGERGWMRIVTSTYKDGGGAHYNLASRKTAPPG 988
           PWGE GWMRIVTSTYK G GA YNLA  ++   G
Sbjct: 267 PWGEHGWMRIVTSTYKGGEGARYNLAIEESCTFG 300


>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
          Length = 463

 Score =  110 bits (274), Expect = 4e-24
 Identities = 74/228 (32%), Positives = 101/228 (44%), Gaps = 10/228 (4%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP SWDWRNV+G+N+ +  RNQ     CGSC++  S   M  RI I       + +LS Q
Sbjct: 231 LPTSWDWRNVHGINFVTPVRNQGS---CGSCYSFASMGMMEARIRILTNNT-QTPILSPQ 286

Query: 455 HVIDCGN-AGSCEGGDD-LPVWAYAHRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKEC 628
            V+ C   A  CEGG   L    YA   G+ +E C  Y   D  C     C     F+  
Sbjct: 287 EVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLKEGC-----FRYY 341

Query: 629 HVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE------Y 790
               +Y    VG +        M  E+   GP++      +   +Y  G+Y        +
Sbjct: 342 SSEYHY----VGGFYGGCNEALMKLELVHQGPMAVAFEVYDDFLHYRKGVYHHTGLRDPF 397

Query: 791 KDQAYINHIVSVAGWGV--SGGTEYWNVRNSWGEPWGERGWMRIVTST 928
                 NH V + G+G   + G +YW V+NSWG  WGE G+ RI   T
Sbjct: 398 NPFELTNHAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYFRIRRGT 445


>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
          Length = 331

 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 81/254 (31%), Positives = 116/254 (45%), Gaps = 15/254 (5%)
 Frame = +2

Query: 239 YPRPHEYLSPSD--LPRSWDWRN---VNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADR 403
           +PR   Y S  +  LP S DWR    V  V Y            CGSCWA  +  A+  +
Sbjct: 101 WPRNVTYKSDPNQKLPDSMDWREKGCVTEVKYQGA---------CGSCWAFSAVGALEAQ 151

Query: 404 INIKRKGAWPSTLLSVQHVIDC-----GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQ 565
           + +K  G   S  LS Q+++DC     GN G C GG     + Y    +GI  E    Y+
Sbjct: 152 VKLKT-GKLVS--LSAQNLVDCSTAKYGNKG-CNGGFMTEAFQYIIDNNGIDSEASYPYK 207

Query: 566 AKDQVC--DKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCG 736
           A D  C  D  N+  TC+ + E                   G E+ + E  AN GP+S G
Sbjct: 208 AMDGKCQYDVKNRAATCSRYIELPF----------------GSEEALKEAVANKGPVSVG 251

Query: 737 IMATEK-MSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMR 913
           I A+      Y  G+Y +      +NH V V G+G   G +YW V+NSWG  +G++G++R
Sbjct: 252 IDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGNLDGKDYWLVKNSWGLHFGDQGYIR 311

Query: 914 IVTSTYKDGGGAHY 955
           +  ++    G A+Y
Sbjct: 312 MARNSGNHCGIANY 325


>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
          Length = 375

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 77/234 (32%), Positives = 109/234 (46%), Gaps = 8/234 (3%)
 Frame = +2

Query: 239 YPR--PHEYLSPSDL--PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRI 406
           +PR    EY S S+L  P  +DWR+ + V      RNQ   + CG CWA     A+    
Sbjct: 146 FPRFPAEEYTSISNLSLPLRFDWRDKHVVTQV---RNQ---KTCGGCWAFSVVGAVESVC 199

Query: 407 NIKRKGAWPSTLLSVQHVIDCGNAG-SCEGGDDLPVWAYAHRHGIPDETCNNYQAKDQVC 583
            IK +   P  +LSVQ VIDC  +   C GG  L    + ++  +     + Y  + Q  
Sbjct: 200 AIKGQ---PLEVLSVQQVIDCSYSNYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQN- 255

Query: 584 DKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE-IYANGPISCGIMATEKMS 760
                 G C  F + H   +   +   D+   SG+E  MAE + A GP+   I+  + MS
Sbjct: 256 ------GLCRYFSDSHSGSSIKGYSAYDF---SGQEDKMAEALLALGPL---IVVVDAMS 303

Query: 761 --NYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
             +Y GGI   +      NH V V G+  +G   YW VRNSWG  WG  G++R+
Sbjct: 304 WQDYLGGIIQHHCSSGEANHAVLVTGFDKTGSIPYWIVRNSWGTSWGIDGYVRV 357


>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
          Length = 384

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 77/234 (32%), Positives = 109/234 (46%), Gaps = 8/234 (3%)
 Frame = +2

Query: 239 YPR--PHEYLSPSDL--PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRI 406
           +PR    EY S S+L  P  +DWR+ + V      RNQ   + CG CWA     A+    
Sbjct: 155 FPRFPAEEYTSISNLSLPLRFDWRDKHVVTQV---RNQ---KTCGGCWAFSVVGAVESVC 208

Query: 407 NIKRKGAWPSTLLSVQHVIDCGNAG-SCEGGDDLPVWAYAHRHGIPDETCNNYQAKDQVC 583
            IK +   P  +LSVQ VIDC  +   C GG  L    + ++  +     + Y  + Q  
Sbjct: 209 AIKGQ---PLEVLSVQQVIDCSYSNYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQN- 264

Query: 584 DKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE-IYANGPISCGIMATEKMS 760
                 G C  F + H   +   +   D+   SG+E  MAE + A GP+   I+  + MS
Sbjct: 265 ------GLCRYFSDSHSGSSIKGYSAYDF---SGQEDKMAEALLALGPL---IVVVDAMS 312

Query: 761 --NYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
             +Y GGI   +      NH V V G+  +G   YW VRNSWG  WG  G++R+
Sbjct: 313 WQDYLGGIIQHHCSSGEANHAVLVTGFDKTGSIPYWIVRNSWGTSWGIDGYVRV 366


>ref|NP_776456.1| cathepsin B precursor [Bos taurus].
          Length = 335

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 69/258 (26%), Positives = 102/258 (39%), Gaps = 26/258 (10%)
 Frame = +2

Query: 224 LGHRTYPRPHEYLSPSDLPRSWD----WRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSA 391
           LG    P+   + +   LP S+D    W N   +      R+Q     CGSCWA G+  A
Sbjct: 63  LGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEI---RDQGS---CGSCWAFGAVEA 116

Query: 392 MADRINIKRKGAWPSTLLSVQHVIDC--GNAGS-CEGGDDLPVWAYAHRHGIPDET---- 550
           ++DRI I   G   +  +S + ++ C  G  G  C GG     W +  + G+        
Sbjct: 117 ISDRICIHSNGR-VNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNS 175

Query: 551 ---CNNYQ---------AKDQVCDKFNQCGTCTEFKECHVIQNYTLWK---VGDYGSVSG 685
              C  Y               C        C++  E     +Y   K      Y   + 
Sbjct: 176 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANN 235

Query: 686 REKMMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWN 865
            +++MAEIY NGP+            Y  G+Y     +    H + + GWGV  GT YW 
Sbjct: 236 EKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWL 295

Query: 866 VRNSWGEPWGERGWMRIV 919
           V NSW   WG+ G+ +I+
Sbjct: 296 VGNSWNTDWGDNGFFKIL 313


>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
          Length = 335

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 65/220 (29%), Positives = 94/220 (42%), Gaps = 7/220 (3%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           P S DWR     N+ +  +NQ     CGSCW   +T A+   + I   G  P   L+ Q 
Sbjct: 117 PPSMDWRKKG--NFVTPVKNQGS---CGSCWTFSTTGALESAVAIAT-GKLP--FLAEQQ 168

Query: 458 VIDCG---NAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKE 625
           ++DC    N   C+GG     + Y  +  GI  E    Y+ +D  C K+         K+
Sbjct: 169 LVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGDC-KYQPSKAIAFVKD 227

Query: 626 CHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE---YKD 796
              + N TL         +  E M+  +  + P+S     T     Y  GIY+    +K 
Sbjct: 228 ---VANITL---------NDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKT 275

Query: 797 QAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
              +NH V   G+G   G  YW V+NSWG  WG +G+  I
Sbjct: 276 PDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLI 315


>ref|NP_001029607.1| cathepsin K [Bos taurus].
          Length = 334

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 5/235 (2%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           P S D+R      Y +  +NQ     CGSCWA  S  A+  ++  K+ G   +  LS Q+
Sbjct: 121 PDSVDYRKKG---YVTPVKNQG---QCGSCWAFSSVGALEGQLK-KKTGKLLN--LSPQN 171

Query: 458 VIDCGNAGS-CEGGDDLPVWAYAHRH-GIPDETCNNYQAKDQVCDKFNQCGTCTEFKECH 631
           ++DC +    C GG     + Y  ++ GI  E    Y  +D+ C  +N  G   + +   
Sbjct: 172 LVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDENC-MYNPTGKAAKCRGYR 230

Query: 632 VIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYK-DQA 802
            I               G EK +    A  GPIS  I A+      Y  G+Y +   +  
Sbjct: 231 EIPE-------------GNEKALKRAVARVGPISVAIDASLTSFQFYRKGVYYDENCNSD 277

Query: 803 YINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHYNLAS 967
            +NH V   G+G+  G ++W ++NSWGE WG +G+  I+ +  K+      NLAS
Sbjct: 278 NLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 330


>ref|NP_001030279.1| tubulointerstitial nephritis antigen [Bos taurus].
          Length = 476

 Score = 79.7 bits (195), Expect = 6e-15
 Identities = 59/213 (27%), Positives = 82/213 (38%), Gaps = 25/213 (11%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDC--GNAGSCEGGDDLPVWAYAHR 529
           C + WA  + S  ADRI I+ +G + + L S Q++I C       C  G     W Y  +
Sbjct: 240 CAASWAFSTASVAADRIAIQSQGRYTANL-SPQNLISCCAKKRHGCNSGSVDRAWWYLRK 298

Query: 530 HGIPDETC----------NNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSV 679
            G+    C          NN  A     D   +    T         N        Y   
Sbjct: 299 RGLVSHACYPLFKDQNATNNGCAMASRSDGRGKRHATTPCPNSIEKSNRIYQCSPPYRVS 358

Query: 680 SGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAEY--------KDQAYINHIVSVAGW 835
           S   ++M EI  NGP+   +   E   NY  GIY           K + +  H V + GW
Sbjct: 359 SNETEIMREIMQNGPVQAIMQVHEDFFNYKTGIYRHITSTNEDSEKYRKFRTHAVKLTGW 418

Query: 836 GVSGGTE-----YWNVRNSWGEPWGERGWMRIV 919
           G   G +     +W   NSWG+ WGE G+ RI+
Sbjct: 419 GTLRGAQGQKEKFWIAANSWGKSWGENGYFRIL 451


>ref|NP_001068884.1| cathepsin F [Bos taurus].
          Length = 460

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 65/219 (29%), Positives = 93/219 (42%), Gaps = 9/219 (4%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSV-- 451
           P  WDWRN   V       N      CGSCWA   T  +  +  +KR      TLLS+  
Sbjct: 248 PPQWDWRNKGAVT------NVKDQGMCGSCWAFSVTGNVEGQWFLKR-----GTLLSLSE 296

Query: 452 QHVIDCGNAG-SCEGGDDLPVWAYAHRH---GIPDETCNNYQAKDQVCDKFNQCGTCTEF 619
           Q ++DC     +C GG  LP  AY+      G+  E   +Y+ + Q C          E 
Sbjct: 297 QELLDCDKTDKACLGG--LPSNAYSAIRTLGGLETEDDYSYRGRLQTCS------FSAEK 348

Query: 620 KECHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQ 799
            + ++  +  L K          +K+ A +  NGP+S  I A   M  Y  GI    +  
Sbjct: 349 AKVYINDSVELSK--------NEQKLAAWLAKNGPVSIAINAFG-MQFYRHGISHPLRPL 399

Query: 800 A---YINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGW 907
                I+H V + G+G      +W ++NSWG  WGE G+
Sbjct: 400 CSPWLIDHAVLLVGYGNRSAIPFWAIKNSWGTDWGEEGY 438


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,418,818
Number of extensions: 1519457
Number of successful extensions: 7074
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6997
Number of HSP's successfully gapped: 14
Length of query: 457
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,174,046
Effective search space: 4975090146
Effective search space used: 4975090146
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000959
         (1371 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_854795.1| PREDICTED: similar to Cathepsin Z precursor (Ca...   499   e-141
Alignment   gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar...   124   2e-28
Alignment   gi|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I pr...   119   5e-27
Alignment   gi|XP_543203.2| PREDICTED: similar to cathepsin B preproprotein...    94   3e-19
Alignment   gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari...    91   3e-18
Alignment   gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca...    86   6e-17
Alignment   gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari...    84   4e-16
Alignment   gi|XP_535330.2| PREDICTED: similar to P3ECSL [Canis familiaris].      79   8e-15
Alignment   gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca...    79   1e-14
Alignment   gi|XP_538969.2| PREDICTED: similar to tubulointerstitial nephri...    78   2e-14

>ref|XP_854795.1| PREDICTED: similar to Cathepsin Z precursor (Cathepsin X)
           (Cathepsin P) [Canis familiaris].
          Length = 375

 Score =  499 bits (1285), Expect = e-141
 Identities = 221/244 (90%), Positives = 233/244 (95%)
 Frame = +2

Query: 233 RTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINI 412
           RTYPRPHEYLSPSDLP+SWDWRNVNGVNYAS TRNQHIPQYCGSCWAHGSTSAMADRINI
Sbjct: 120 RTYPRPHEYLSPSDLPKSWDWRNVNGVNYASATRNQHIPQYCGSCWAHGSTSAMADRINI 179

Query: 413 KRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAHRHGIPDETCNNYQAKDQVCDKF 592
           KRKGAWPSTLLSVQHV+DC NAGSCEGG+DLPVW+YAH HGIPDETCNNYQAKDQ C+KF
Sbjct: 180 KRKGAWPSTLLSVQHVLDCANAGSCEGGNDLPVWSYAHEHGIPDETCNNYQAKDQECNKF 239

Query: 593 NQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTG 772
           NQCGTCTEFKECH IQNYTLW+VGDYGS+SGREKMMAEIYANGPISCGIMATEKM NYTG
Sbjct: 240 NQCGTCTEFKECHAIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATEKMVNYTG 299

Query: 773 GIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAH 952
           GI+AEY++QAYINH++SV GWGVS GTEYW VRNSWGEPWGERGWMRIVTSTYKDG GA 
Sbjct: 300 GIHAEYQEQAYINHVISVVGWGVSDGTEYWIVRNSWGEPWGERGWMRIVTSTYKDGKGAS 359

Query: 953 YNLA 964
           YNLA
Sbjct: 360 YNLA 363


>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
          Length = 459

 Score =  124 bits (311), Expect = 2e-28
 Identities = 84/259 (32%), Positives = 114/259 (44%), Gaps = 19/259 (7%)
 Frame = +2

Query: 209 DQRTQLGHRTYPRP---------HEYLSPSDLPRSWDWRNVNGVNYASVTRNQHIPQYCG 361
           D  T++G R  PRP         HE +S   LP SWDWRNV G N+ S  RNQ     CG
Sbjct: 199 DMMTRVGGRKIPRPKPTPLTAEIHEEISR--LPTSWDWRNVRGTNFVSPVRNQ---ASCG 253

Query: 362 SCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGN-AGSCEGGDD-LPVWAYAHRHG 535
           SC+A  ST+ +  RI I       + +LS Q ++ C   A  CEGG   L    YA   G
Sbjct: 254 SCYAFASTAMLEARIRILTNNT-QTPILSPQEIVSCSQYAQGCEGGFPYLIAGKYAQDFG 312

Query: 536 IPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYA 715
           + +E C  Y   D  C             +C    +   + VG +        M  E+  
Sbjct: 313 LVEEACFPYAGSDSPCKP----------NDCFRYYSSEYYYVGGFYGACNEALMKLELVR 362

Query: 716 NGPISCGIMATEKMSNYTGGIYAE------YKDQAYINHIVSVAGWGV--SGGTEYWNVR 871
           +GP++      +   +Y  GIY        +      NH V + G+G   + G +YW V+
Sbjct: 363 HGPMAVAFEVYDDFFHYQKGIYYHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVK 422

Query: 872 NSWGEPWGERGWMRIVTST 928
           NSWG  WGE G+ RI   T
Sbjct: 423 NSWGSRWGEDGYFRIRRGT 441


>ref|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I precursor (DPP-I)
           (DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl
           transferase), partial [Canis familiaris].
          Length = 481

 Score =  119 bits (299), Expect = 5e-27
 Identities = 87/259 (33%), Positives = 115/259 (44%), Gaps = 19/259 (7%)
 Frame = +2

Query: 209 DQRTQLGHRTYPRP---------HEYLSPSDLPRSWDWRNVNGVNYASVTRNQHIPQYCG 361
           D   + G R  PRP         HE +S   LP SWDWRNV G N+ S  RNQ     CG
Sbjct: 221 DMMRRAGGRKIPRPKPTPLTAEIHEEISR--LPTSWDWRNVRGTNFVSPVRNQ---ASCG 275

Query: 362 SCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGN-AGSCEGG-DDLPVWAYAHRHG 535
           SC+A  ST  +  RI I       + +LS Q ++ C   A  CEGG   L    YA   G
Sbjct: 276 SCYAFASTVMLEARIRILTNNT-QTPILSPQEIVSCSQYAQGCEGGFPYLIAGKYAQDFG 334

Query: 536 IPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYA 715
           + DE C +Y   D  C K N C         H   +   +  G YG+ +    M  E+  
Sbjct: 335 LVDEACFSYAGSDSPC-KPNDC--------FHYYSSEYHYVGGFYGACN-EALMKLELVR 384

Query: 716 NGPISCGIMATEKMSNYTGGIYAE------YKDQAYINHIVSVAGWGV--SGGTEYWNVR 871
           +GP++      +   +Y  GIY               NH V + G+G   + G +YW V+
Sbjct: 385 HGPMAVAFEVYDDFFHYQKGIYYHTGLRDPINPFELTNHAVLLVGYGTDSASGMDYWIVK 444

Query: 872 NSWGEPWGERGWMRIVTST 928
           NSWG  WGE G+ +I   T
Sbjct: 445 NSWGSRWGEDGYFQICRGT 463


>ref|XP_543203.2| PREDICTED: similar to cathepsin B preproprotein [Canis familiaris].
          Length = 420

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 75/261 (28%), Positives = 104/261 (39%), Gaps = 27/261 (10%)
 Frame = +2

Query: 218 TQLGHRTYPRPHEYLSPSDLPRSWD----WRNVNGVNYASVTRNQHIPQYCGSCWAHGST 385
           T LG    P+  ++     LP S+D    W N   +      R+Q     CGSCWA G+ 
Sbjct: 142 TFLGGPKLPQRVQFAKNLILPESFDAREQWPNCPTIKEI---RDQGS---CGSCWAFGAV 195

Query: 386 SAMADRINIKRKGAWPSTLLSVQHVIDCGN--AGSCEGGDDLPVWAYAHRHGIPDET--- 550
            A++DRI I+  G     + +   +  CG+     C GG     W +  + G+       
Sbjct: 196 EAISDRICIRTNGHVNVEVSAEDMLTCCGDQCGDGCNGGFPAEAWNFWTKQGLVSGGLYD 255

Query: 551 ----CNNYQ---------AKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYG----SV 679
               C  Y               C        C++  E     +Y   K   YG    SV
Sbjct: 256 SHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPSYKEDK--HYGCSSYSV 313

Query: 680 SGREK-MMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTE 856
           S  EK +MAEIY NGP+            Y  G+Y     +    H V + GWGV  GT 
Sbjct: 314 SDNEKEIMAEIYKNGPVEAAFTVYSDFLLYKSGVYQHVTGEMMGGHAVRILGWGVEDGTP 373

Query: 857 YWNVRNSWGEPWGERGWMRIV 919
           YW V NSW   WG+ G+ +I+
Sbjct: 374 YWLVGNSWNTDWGDNGFFKIL 394


>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
          Length = 331

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 75/250 (30%), Positives = 111/250 (44%), Gaps = 10/250 (4%)
 Frame = +2

Query: 263 SPSDLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTL 442
           S   LP S DWR    V       +      CG+CWA  +  A+  ++ +K  G   S  
Sbjct: 111 SNQKLPDSVDWREKGCVTEVKYQGS------CGACWAFSAVGALEAQLKLKT-GKLVS-- 161

Query: 443 LSVQHVIDC-----GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVC--DKFNQ 598
           LS Q+++DC     GN G C GG     + Y    +GI  E    Y+A +  C  D   +
Sbjct: 162 LSAQNLVDCSTEKYGNKG-CNGGFMTTAFQYIIDNNGIDSEASYPYKAMNGKCRYDSKKR 220

Query: 599 CGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMATE-KMSNYTG 772
             TC+++ E                   G E  + E  AN GP+S  I A+      Y  
Sbjct: 221 AATCSKYTELPF----------------GSEDALKEAVANKGPVSVAIDASHYSFFLYRS 264

Query: 773 GIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAH 952
           G+Y E      +NH V V G+G   G +YW V+NSWG  +G++G++R+  ++     G H
Sbjct: 265 GVYYEPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNS-----GNH 319

Query: 953 YNLASRKTAP 982
             +AS  + P
Sbjct: 320 CGIASYPSYP 329


>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
          Length = 518

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 68/218 (31%), Positives = 94/218 (43%), Gaps = 4/218 (1%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP  +DWR+   V      RNQ   Q CG CWA     A+     IK K   P   +SVQ
Sbjct: 303 LPLRFDWRDKRVVTQV---RNQ---QTCGGCWAFSVVGAVESAYAIKGK---PLADISVQ 353

Query: 455 HVIDCG-NAGSCEGGDDLPVWAYAHRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECH 631
            VIDC  N   C GG  L    + ++  +     + Y  K Q        G C  F +  
Sbjct: 354 QVIDCSYNNYGCSGGSTLNALNWLNKTQVKLVRDSEYPFKAQN-------GLCHYFSD-- 404

Query: 632 VIQNYTLWKVGDYGSV--SGREKMMAEIYAN-GPISCGIMATEKMSNYTGGIYAEYKDQA 802
              +Y+ + +  Y +   S +E  MA++    GP+   + A     +Y GGI   +    
Sbjct: 405 ---SYSGFSIRGYSAYDFSDQEDEMAKVLLTFGPLVVVVDAVS-WQDYLGGIIQHHCSSG 460

Query: 803 YINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
             NH V + G+   G T YW VRNSWG  WG  G+  +
Sbjct: 461 EANHAVLITGFDKIGSTPYWIVRNSWGSSWGVDGYAHV 498


>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
          Length = 330

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 70/238 (29%), Positives = 108/238 (45%), Gaps = 5/238 (2%)
 Frame = +2

Query: 269 SDLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLS 448
           S  P S D+R      Y +  +NQ     CGSCWA  S  A+  ++  K+ G   +  LS
Sbjct: 114 SRAPDSVDYRKKG---YVTPVKNQG---QCGSCWAFSSVGALEGQLK-KKTGKLLN--LS 164

Query: 449 VQHVIDCGNAGS-CEGGDDLPVWAYAHRH-GIPDETCNNYQAKDQVCDKFNQCGTCTEFK 622
            Q+++DC +    C GG     + Y  ++ GI  E    Y  +D+ C  +N  G   + +
Sbjct: 165 PQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDESC-MYNPTGKAAKCR 223

Query: 623 ECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYK- 793
               I               G EK +    A  GPIS  I A+      Y+ G+Y +   
Sbjct: 224 GYREIPE-------------GNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENC 270

Query: 794 DQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHYNLAS 967
           +   +NH V   G+G+  G ++W ++NSWGE WG +G+  I+ +  K+      NLAS
Sbjct: 271 NSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 326


>ref|XP_535330.2| PREDICTED: similar to P3ECSL [Canis familiaris].
          Length = 550

 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 30/218 (13%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCG--NAGSCEGGDDLPVWAYAHR 529
           C   WA  + +  +DR++I   G   + +LS Q+++ C   N   C GG     W +  R
Sbjct: 309 CAGSWAFSTAAVASDRVSIHSLGHM-TPVLSPQNLLSCDTHNQQGCRGGRLDGAWWFLRR 367

Query: 530 HGIPDETCNNYQAKDQVCDKFNQCGTCTEFKEC---------------HVIQNYTLWKVG 664
            G+  + C  +  ++Q  D+      C                     HV  N       
Sbjct: 368 RGVVSDHCYPFVGREQ--DEAGPAPRCMMHSRAMGRGKRQATARCPSSHVHANDIYQVTP 425

Query: 665 DYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAEY--------KDQAYINHIV 820
            Y   +  +++M E+  NGP+   +   E    Y GGIY+          + + +  H V
Sbjct: 426 AYRLGTNEKEIMKELMENGPVQALMEVHEDFFLYQGGIYSHTPVSLGRPERYRRHGTHSV 485

Query: 821 SVAGWGVS----GGT-EYWNVRNSWGEPWGERGWMRIV 919
            + GWG      G T +YW   NSWG  WGERG  RIV
Sbjct: 486 KITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIV 523


>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
          Length = 304

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 63/216 (29%), Positives = 90/216 (41%), Gaps = 10/216 (4%)
 Frame = +2

Query: 290 DWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSV--QHVI 463
           DWR      + S  +NQ     CGSCW   +T A+   I IK        LLS+  Q ++
Sbjct: 89  DWRKKG--KFVSPVKNQGS---CGSCWTFSTTGALESAIAIKS-----GKLLSLAEQQLV 138

Query: 464 DCG---NAGSCEG-GDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKEC 628
           DC    N   C+G G  L  + Y  +  GI  E    Y+ +D  C K+         K+ 
Sbjct: 139 DCAQNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDC-KYQPSKAIAFVKD- 196

Query: 629 HVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE---YKDQ 799
             + N T         ++  + M+  +    P+S     T     Y  GIY+    +K  
Sbjct: 197 --VANIT---------INDEQAMVEAVALYNPVSFAFEVTSDFMMYRKGIYSSTSCHKTP 245

Query: 800 AYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGW 907
             +NH V   G+G   G  YW V+NSWG  WG  G+
Sbjct: 246 DKVNHAVLAVGYGEQNGIPYWIVKNSWGPQWGMNGY 281


>ref|XP_538969.2| PREDICTED: similar to tubulointerstitial nephritis antigen [Canis
           familiaris].
          Length = 476

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 25/213 (11%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDC--GNAGSCEGGDDLPVWAYAHR 529
           C + WA  + S  ADRI I+  G + + L S Q++I C   N   C  G     W +  +
Sbjct: 240 CAASWAFSTASVAADRIAIQSNGRYTANL-SPQNLISCCAKNRHGCNSGSIDRAWWFLRK 298

Query: 530 HGIPDETC----NNYQAKDQVCDKFNQC---GTCTEFKEC--HVIQNYTLWKVGDYGSVS 682
            G+    C     +  A +  C   ++    G     K C  ++ ++  +++      VS
Sbjct: 299 RGLVSHACYPLFKDQNATNYGCAMASRSDGRGKRHATKPCPNNIEKSNRIYQCSPPYRVS 358

Query: 683 GRE-KMMAEIYANGPISCGIMATEKMSNYTGGIYAEY--------KDQAYINHIVSVAGW 835
             E ++M EI  NGP+   +   E   +Y  GIY           K Q    H V + GW
Sbjct: 359 SNETEIMKEIMQNGPVQAIMQVHEDFFHYKTGIYRHITRTNEESRKYQKLQTHAVKLTGW 418

Query: 836 GVSGGTE-----YWNVRNSWGEPWGERGWMRIV 919
           G   G +     +W   NSWG  WGE G+ RI+
Sbjct: 419 GTLKGAQGQKEKFWIAANSWGISWGENGYFRIL 451


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,988,208
Number of extensions: 1456022
Number of successful extensions: 7307
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7253
Number of HSP's successfully gapped: 13
Length of query: 457
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 351
Effective length of database: 15,340,888
Effective search space: 5384651688
Effective search space used: 5384651688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000959
         (1371 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001327.2| cathepsin Z preproprotein [Homo sapiens].            513   e-145
Alignment   gi|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein ...   113   5e-25
Alignment   gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie...    99   1e-20
Alignment   gi|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sa...    95   1e-19
Alignment   gi|NP_680093.1| cathepsin B preproprotein [Homo sapiens].             93   7e-19
Alignment   gi|NP_680092.1| cathepsin B preproprotein [Homo sapiens].             93   7e-19
Alignment   gi|NP_680091.1| cathepsin B preproprotein [Homo sapiens].             93   7e-19
Alignment   gi|NP_680090.1| cathepsin B preproprotein [Homo sapiens].             93   7e-19
Alignment   gi|NP_001899.1| cathepsin B preproprotein [Homo sapiens].             93   7e-19
Alignment   gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].         90   6e-18

>ref|NP_001327.2| cathepsin Z preproprotein [Homo sapiens].
          Length = 303

 Score =  513 bits (1322), Expect = e-145
 Identities = 227/266 (85%), Positives = 246/266 (92%)
 Frame = +2

Query: 167 HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI 346
           +FR G +CYRPLRGD    LG  TYPRPHEYLSP+DLP+SWDWRNV+GVNYAS+TRNQHI
Sbjct: 26  YFRRGQTCYRPLRGDGLAPLGRSTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHI 85

Query: 347 PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH 526
           PQYCGSCWAH STSAMADRINIKRKGAWPSTLLSVQ+VIDCGNAGSCEGG+DL VW YAH
Sbjct: 86  PQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAH 145

Query: 527 RHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE 706
           +HGIPDETCNNYQAKDQ CDKFNQCGTC EFKECH I+NYTLW+VGDYGS+SGREKMMAE
Sbjct: 146 QHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAE 205

Query: 707 IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGE 886
           IYANGPISCGIMATE+++NYTGGIYAEY+D  YINH+VSVAGWG+S GTEYW VRNSWGE
Sbjct: 206 IYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGE 265

Query: 887 PWGERGWMRIVTSTYKDGGGAHYNLA 964
           PWGERGW+RIVTSTYKDG GA YNLA
Sbjct: 266 PWGERGWLRIVTSTYKDGKGARYNLA 291


>ref|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein [Homo sapiens].
          Length = 463

 Score =  113 bits (282), Expect = 5e-25
 Identities = 75/228 (32%), Positives = 103/228 (45%), Gaps = 10/228 (4%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP SWDWRNV+G+N+ S  RNQ     CGSC++  S   +  RI I    +  + +LS Q
Sbjct: 231 LPTSWDWRNVHGINFVSPVRNQ---ASCGSCYSFASMGMLEARIRILTNNS-QTPILSPQ 286

Query: 455 HVIDCGN-AGSCEGG-DDLPVWAYAHRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKEC 628
            V+ C   A  CEGG   L    YA   G+ +E C  Y   D  C     C     F+  
Sbjct: 287 EVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDC-----FRYY 341

Query: 629 HVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE------Y 790
               +Y    VG +        M  E+  +GP++      +   +Y  GIY        +
Sbjct: 342 SSEYHY----VGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPF 397

Query: 791 KDQAYINHIVSVAGWGV--SGGTEYWNVRNSWGEPWGERGWMRIVTST 928
                 NH V + G+G   + G +YW V+NSWG  WGE G+ RI   T
Sbjct: 398 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGT 445


>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
          Length = 331

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 78/246 (31%), Positives = 110/246 (44%), Gaps = 10/246 (4%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP S DWR    V       +      CG+CWA  +  A+  ++ +K  G   S  LS Q
Sbjct: 115 LPDSVDWREKGCVTEVKYQGS------CGACWAFSAVGALEAQLKLKT-GKLVS--LSAQ 165

Query: 455 HVIDC-----GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVC--DKFNQCGTC 610
           +++DC     GN G C GG     + Y     GI  +    Y+A DQ C  D   +  TC
Sbjct: 166 NLVDCSTEKYGNKG-CNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATC 224

Query: 611 TEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMATE-KMSNYTGGIYA 784
           +++ E                   GRE ++ E  AN GP+S G+ A       Y  G+Y 
Sbjct: 225 SKYTELPY----------------GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY 268

Query: 785 EYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHYNLA 964
           E      +NH V V G+G   G EYW V+NSWG  +GE G++R+  +      G H  +A
Sbjct: 269 EPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNK-----GNHCGIA 323

Query: 965 SRKTAP 982
           S  + P
Sbjct: 324 SFPSYP 329


>ref|NP_001186668.1| cathepsin S isoform 2 preproprotein [Homo sapiens].
          Length = 281

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 71/219 (32%), Positives = 102/219 (46%), Gaps = 10/219 (4%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDC-----GNAGSCEGGDDLPVWAY 520
           CG+CWA  +  A+  ++ +K  G   S  LS Q+++DC     GN G C GG     + Y
Sbjct: 86  CGACWAFSAVGALEAQLKLKT-GKLVS--LSAQNLVDCSTEKYGNKG-CNGGFMTTAFQY 141

Query: 521 A-HRHGIPDETCNNYQAKDQVC--DKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGRE 691
                GI  +    Y+A DQ C  D   +  TC+++ E                   GRE
Sbjct: 142 IIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPY----------------GRE 185

Query: 692 KMMAEIYAN-GPISCGIMATE-KMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWN 865
            ++ E  AN GP+S G+ A       Y  G+Y E      +NH V V G+G   G EYW 
Sbjct: 186 DVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWL 245

Query: 866 VRNSWGEPWGERGWMRIVTSTYKDGGGAHYNLASRKTAP 982
           V+NSWG  +GE G++R+  +      G H  +AS  + P
Sbjct: 246 VKNSWGHNFGEEGYIRMARNK-----GNHCGIASFPSYP 279


>ref|NP_680093.1| cathepsin B preproprotein [Homo sapiens].
          Length = 339

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNA---GSCEGGDDLPVWAYAH 526
           CGSCWA G+  A++DRI I    A  S  +S + ++ C  +     C GG     W +  
Sbjct: 105 CGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWT 163

Query: 527 RHGI-------PDETCNNY---------QAKDQVCDKFNQCGTCTEFKECHVIQNYTLWK 658
           R G+           C  Y               C        C++  E      Y   K
Sbjct: 164 RKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDK 223

Query: 659 VGDYG--SVSGREK-MMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVA 829
              Y   SVS  EK +MAEIY NGP+            Y  G+Y     +    H + + 
Sbjct: 224 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRIL 283

Query: 830 GWGVSGGTEYWNVRNSWGEPWGERGWMRIV 919
           GWGV  GT YW V NSW   WG+ G+ +I+
Sbjct: 284 GWGVENGTPYWLVANSWNTDWGDNGFFKIL 313


>ref|NP_680092.1| cathepsin B preproprotein [Homo sapiens].
          Length = 339

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNA---GSCEGGDDLPVWAYAH 526
           CGSCWA G+  A++DRI I    A  S  +S + ++ C  +     C GG     W +  
Sbjct: 105 CGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWT 163

Query: 527 RHGI-------PDETCNNY---------QAKDQVCDKFNQCGTCTEFKECHVIQNYTLWK 658
           R G+           C  Y               C        C++  E      Y   K
Sbjct: 164 RKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDK 223

Query: 659 VGDYG--SVSGREK-MMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVA 829
              Y   SVS  EK +MAEIY NGP+            Y  G+Y     +    H + + 
Sbjct: 224 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRIL 283

Query: 830 GWGVSGGTEYWNVRNSWGEPWGERGWMRIV 919
           GWGV  GT YW V NSW   WG+ G+ +I+
Sbjct: 284 GWGVENGTPYWLVANSWNTDWGDNGFFKIL 313


>ref|NP_680091.1| cathepsin B preproprotein [Homo sapiens].
          Length = 339

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNA---GSCEGGDDLPVWAYAH 526
           CGSCWA G+  A++DRI I    A  S  +S + ++ C  +     C GG     W +  
Sbjct: 105 CGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWT 163

Query: 527 RHGI-------PDETCNNY---------QAKDQVCDKFNQCGTCTEFKECHVIQNYTLWK 658
           R G+           C  Y               C        C++  E      Y   K
Sbjct: 164 RKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDK 223

Query: 659 VGDYG--SVSGREK-MMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVA 829
              Y   SVS  EK +MAEIY NGP+            Y  G+Y     +    H + + 
Sbjct: 224 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRIL 283

Query: 830 GWGVSGGTEYWNVRNSWGEPWGERGWMRIV 919
           GWGV  GT YW V NSW   WG+ G+ +I+
Sbjct: 284 GWGVENGTPYWLVANSWNTDWGDNGFFKIL 313


>ref|NP_680090.1| cathepsin B preproprotein [Homo sapiens].
          Length = 339

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNA---GSCEGGDDLPVWAYAH 526
           CGSCWA G+  A++DRI I    A  S  +S + ++ C  +     C GG     W +  
Sbjct: 105 CGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWT 163

Query: 527 RHGI-------PDETCNNY---------QAKDQVCDKFNQCGTCTEFKECHVIQNYTLWK 658
           R G+           C  Y               C        C++  E      Y   K
Sbjct: 164 RKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDK 223

Query: 659 VGDYG--SVSGREK-MMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVA 829
              Y   SVS  EK +MAEIY NGP+            Y  G+Y     +    H + + 
Sbjct: 224 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRIL 283

Query: 830 GWGVSGGTEYWNVRNSWGEPWGERGWMRIV 919
           GWGV  GT YW V NSW   WG+ G+ +I+
Sbjct: 284 GWGVENGTPYWLVANSWNTDWGDNGFFKIL 313


>ref|NP_001899.1| cathepsin B preproprotein [Homo sapiens].
          Length = 339

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 22/210 (10%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNA---GSCEGGDDLPVWAYAH 526
           CGSCWA G+  A++DRI I    A  S  +S + ++ C  +     C GG     W +  
Sbjct: 105 CGSCWAFGAVEAISDRICI-HTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWT 163

Query: 527 RHGI-------PDETCNNY---------QAKDQVCDKFNQCGTCTEFKECHVIQNYTLWK 658
           R G+           C  Y               C        C++  E      Y   K
Sbjct: 164 RKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDK 223

Query: 659 VGDYG--SVSGREK-MMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVA 829
              Y   SVS  EK +MAEIY NGP+            Y  G+Y     +    H + + 
Sbjct: 224 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRIL 283

Query: 830 GWGVSGGTEYWNVRNSWGEPWGERGWMRIV 919
           GWGV  GT YW V NSW   WG+ G+ +I+
Sbjct: 284 GWGVENGTPYWLVANSWNTDWGDNGFFKIL 313


>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
          Length = 335

 Score = 89.7 bits (221), Expect = 6e-18
 Identities = 69/220 (31%), Positives = 93/220 (42%), Gaps = 7/220 (3%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           P S DWR     N+ S  +NQ     CGSCW   +T A+   I I          L+ Q 
Sbjct: 117 PPSVDWRKKG--NFVSPVKNQGA---CGSCWTFSTTGALESAIAI---ATGKMLSLAEQQ 168

Query: 458 VIDCG---NAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKE 625
           ++DC    N   C+GG     + Y  +  GI  E    YQ KD  C KF Q G    F +
Sbjct: 169 LVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKDGYC-KF-QPGKAIGFVK 226

Query: 626 CHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE---YKD 796
              + N T++           E M+  +    P+S     T+    Y  GIY+    +K 
Sbjct: 227 D--VANITIYD---------EEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKT 275

Query: 797 QAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
              +NH V   G+G   G  YW V+NSWG  WG  G+  I
Sbjct: 276 PDKVNHAVLAVGYGEKNGIPYWIVKNSWGPQWGMNGYFLI 315


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,691,320
Number of extensions: 1399270
Number of successful extensions: 6716
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 6641
Number of HSP's successfully gapped: 22
Length of query: 457
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,802,980
Effective search space: 5195845980
Effective search space used: 5195845980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000959
         (1371 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_071720.1| cathepsin Z preproprotein [Mus musculus].            512   e-145
Alignment   gi|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus muscu...   118   1e-26
Alignment   gi|NP_064680.1| cathepsin R precursor [Mus musculus].                 99   6e-21
Alignment   gi|NP_036137.1| cathepsin J [Mus musculus].                           94   3e-19
Alignment   gi|NP_083912.2| cathepsin Q [Mus musculus].                           93   4e-19
Alignment   gi|NP_067420.1| cathepsin 6 [Mus musculus].                           91   2e-18
Alignment   gi|NP_031827.2| pro-cathepsin H preproprotein [Mus musculus].         89   6e-18
Alignment   gi|NP_067256.2| cathepsin S preproprotein [Mus musculus].             86   5e-17
Alignment   gi|NP_031828.2| cathepsin K precursor [Mus musculus].                 86   7e-17
Alignment   gi|NP_808330.1| cathepsin O precursor [Mus musculus].                 86   9e-17

>ref|NP_071720.1| cathepsin Z preproprotein [Mus musculus].
          Length = 306

 Score =  512 bits (1319), Expect = e-145
 Identities = 231/267 (86%), Positives = 246/267 (92%), Gaps = 1/267 (0%)
 Frame = +2

Query: 167 HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI 346
           +FR G +CY P+RGDQ   LG RTYPRPHEYLSP+DLP++WDWRNVNGVNYASVTRNQHI
Sbjct: 28  YFRSGQTCYHPIRGDQLALLGRRTYPRPHEYLSPADLPKNWDWRNVNGVNYASVTRNQHI 87

Query: 347 PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH 526
           PQYCGSCWAHGSTSAMADRINIKRKGAWPS LLSVQ+VIDCGNAGSCEGG+DLPVW YAH
Sbjct: 88  PQYCGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNAGSCEGGNDLPVWEYAH 147

Query: 527 RHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE 706
           +HGIPDETCNNYQAKDQ CDKFNQCGTCTEFKECH IQNYTLW+VGDYGS+SGREKMMAE
Sbjct: 148 KHGIPDETCNNYQAKDQDCDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAE 207

Query: 707 IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSG-GTEYWNVRNSWG 883
           IYANGPISCGIMATE MSNYTGGIYAE++DQA INHI+SVAGWGVS  G EYW VRNSWG
Sbjct: 208 IYANGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSNDGIEYWIVRNSWG 267

Query: 884 EPWGERGWMRIVTSTYKDGGGAHYNLA 964
           EPWGE+GWMRIVTSTYK G G  YNLA
Sbjct: 268 EPWGEKGWMRIVTSTYKGGTGDSYNLA 294


>ref|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus musculus].
          Length = 462

 Score =  118 bits (295), Expect = 1e-26
 Identities = 77/231 (33%), Positives = 107/231 (46%), Gaps = 12/231 (5%)
 Frame = +2

Query: 272 DLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSV 451
           +LP SWDWRNV GVNY S  RNQ   + CGSC++  S   +  RI I    +  + +LS 
Sbjct: 229 NLPESWDWRNVQGVNYVSPVRNQ---ESCGSCYSFASMGMLEARIRILTNNS-QTPILSP 284

Query: 452 QHVIDCG-NAGSCEGG-DDLPVWAYAHRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKE 625
           Q V+ C   A  C+GG   L    YA   G+ +E+C  Y AKD  C     C        
Sbjct: 285 QEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEESCFPYTAKDSPCKPRENC-------- 336

Query: 626 CHVIQNYT--LWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE---- 787
              ++ Y+   + VG +        M  E+  +GP++      +   +Y  GIY      
Sbjct: 337 ---LRYYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLS 393

Query: 788 --YKDQAYINHIVSVAGWGVS--GGTEYWNVRNSWGEPWGERGWMRIVTST 928
             +      NH V + G+G     G EYW ++NSWG  WGE G+ RI   T
Sbjct: 394 DPFNPFELTNHAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGYFRIRRGT 444


>ref|NP_064680.1| cathepsin R precursor [Mus musculus].
          Length = 334

 Score = 99.4 bits (246), Expect = 6e-21
 Identities = 79/243 (32%), Positives = 108/243 (44%), Gaps = 14/243 (5%)
 Frame = +2

Query: 269 SDLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPS---T 439
           S LP+  DWR      Y +  R Q     C +CWA   T A      I+ +  W +   T
Sbjct: 113 SILPKFVDWRKKG---YVTPVRRQGD---CDACWAFAVTGA------IEAQAIWQTGKLT 160

Query: 440 LLSVQHVIDC----GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCG 604
            LSVQ+++DC    GN G C GGD    + Y  H  G+  E    Y+ KD  C ++N   
Sbjct: 161 PLSVQNLVDCSKPQGNNG-CLGGDTYNAFQYVLHNGGLESEATYPYEGKDGPC-RYNPKN 218

Query: 605 TCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMAT-EKMSNYTGGIY 781
           +  E               G        + +MA +   GPI+ GI A+ E   NY GGIY
Sbjct: 219 SKAEI-------------TGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIY 265

Query: 782 AEYKDQA-YINHIVSVAGWGVSG----GTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGG 946
            E    +  + H V V G+G  G    G  YW ++NSWG+ WG RG+M++        G 
Sbjct: 266 HEPNCSSDTVTHGVLVVGYGFKGIETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGI 325

Query: 947 AHY 955
           A Y
Sbjct: 326 ASY 328


>ref|NP_036137.1| cathepsin J [Mus musculus].
          Length = 333

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 80/248 (32%), Positives = 113/248 (45%), Gaps = 12/248 (4%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP   DWR      Y +  RNQ     CGSCWA  +  A+  ++  K     P   LSVQ
Sbjct: 113 LPDYKDWREEG---YVTPVRNQG---KCGSCWAFAAAGAIEGQMFWKTGNLTP---LSVQ 163

Query: 455 HVIDC----GNAGSCEGGDDLPVWAYAHRH-GIPDETCNNYQAKDQVCDKFNQCGTCTEF 619
           +++DC    GN G C+ G     + Y  ++ G+  E    Y+ KD  C           +
Sbjct: 164 NLLDCSKTVGNKG-CQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPC----------RY 212

Query: 620 KECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYK 793
           +  +   N T     DY ++   E  +    A+ GP+S  I A+ +    Y GGIY E  
Sbjct: 213 RSENASANIT-----DYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPN 267

Query: 794 DQAY-INHIVSVAGWGVSG----GTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHYN 958
             +Y +NH V V G+G  G    G  YW ++NSWGE WG  G+M+I     KD    H  
Sbjct: 268 CSSYFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIA----KDHNN-HCG 322

Query: 959 LASRKTAP 982
           +AS  + P
Sbjct: 323 IASLASYP 330


>ref|NP_083912.2| cathepsin Q [Mus musculus].
          Length = 343

 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 69/235 (29%), Positives = 105/235 (44%), Gaps = 10/235 (4%)
 Frame = +2

Query: 242 PRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRK 421
           P P  +     LP+  DWRN     Y +  RNQ   + C SCWA   T A+  ++  K  
Sbjct: 114 PFPKSWYWKDALPKFVDWRNEG---YVTRVRNQ---RNCNSCWAFPVTGAIEGQMFKKTG 167

Query: 422 GAWPSTLLSVQHVIDC----GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCD 586
              P   LSVQ+++DC    GN G C  G+    + Y  H  G+  +    Y+ K+ +C 
Sbjct: 168 KLIP---LSVQNLVDCSRPQGNRG-CRWGNTYNGFQYVLHNGGLEAQATYPYEGKEGLC- 222

Query: 587 KFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGI-MATEKMSN 763
           ++N   +  +     V+                 + +M  +   GPI+ GI + +     
Sbjct: 223 RYNPKNSAAKITGFVVLPE-------------SEDVLMDAVATKGPIATGIHVVSSSFRF 269

Query: 764 YTGGIYAEYKDQAYINHIVSVAGWGVSG----GTEYWNVRNSWGEPWGERGWMRI 916
           Y GG+Y E    + +NH V + G+G  G    G  YW ++NSWG  WG  G+M I
Sbjct: 270 YDGGVYYEPNCTSSVNHAVLIIGYGYVGNETDGNNYWLIKNSWGRRWGLSGYMMI 324


>ref|NP_067420.1| cathepsin 6 [Mus musculus].
          Length = 334

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 12/239 (5%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP+  DWR      Y +  R Q   ++C SCWA     A+  ++  K+ G    T LSVQ
Sbjct: 115 LPKFVDWRKKG---YVTRVRRQ---KFCNSCWAFAVNGAIEGQM-FKKTGKL--TPLSVQ 165

Query: 455 HVIDC----GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCGTCTEF 619
           +++DC    GN G C+ GD    + Y  +  G+  E    Y+ K+  C ++N   +  E 
Sbjct: 166 NLVDCTKTQGNDG-CQWGDPYIAYEYVLNNGGLEAEATYPYEGKEGPC-RYNPKNSKAE- 222

Query: 620 KECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYK 793
                        +  + S+   E ++ E  A  GPIS  + A+  + S Y GGIY +  
Sbjct: 223 -------------ITGFVSLPESEDILMEAVATIGPISAAVDASFNRFSFYDGGIYHQPN 269

Query: 794 -DQAYINHIVSVAGWGVSG----GTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHY 955
                +NH V V G+G  G    G +YW ++NSWG  WG  G+M+I+       G A Y
Sbjct: 270 CSNNTVNHAVLVVGYGTEGNETDGNKYWLIKNSWGRRWGIGGYMKIIRDQNNHCGIATY 328


>ref|NP_031827.2| pro-cathepsin H preproprotein [Mus musculus].
          Length = 333

 Score = 89.4 bits (220), Expect = 6e-18
 Identities = 66/220 (30%), Positives = 92/220 (41%), Gaps = 7/220 (3%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           P S DWR     N  S  +NQ     CGSCW   +T A+   + I    +     L+ Q 
Sbjct: 115 PSSMDWRKKG--NVVSPVKNQGA---CGSCWTFSTTGALESAVAI---ASGKMLSLAEQQ 166

Query: 458 VIDCGNAGS---CEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKE 625
           ++DC  A +   C+GG     + Y  +  GI +E    Y  KD  C +FN        K 
Sbjct: 167 LVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKDSSC-RFNPQKAVAFVKN 225

Query: 626 CHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE---YKD 796
              + N TL         +    M+  +    P+S     TE    Y  G+Y+    +K 
Sbjct: 226 ---VVNITL---------NDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKT 273

Query: 797 QAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
              +NH V   G+G   G  YW V+NSWG  WGE G+  I
Sbjct: 274 PDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLI 313


>ref|NP_067256.2| cathepsin S preproprotein [Mus musculus].
          Length = 340

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 10/237 (4%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP + DWR    V       +      CG+CWA  +  A+  ++ +K  G   S  LS Q
Sbjct: 123 LPDTVDWREKGCVTEVKYQGS------CGACWAFSAVGALEGQLKLKT-GKLIS--LSAQ 173

Query: 455 HVIDC------GNAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVC--DKFNQCGT 607
           +++DC      GN G C GG     + Y     GI  +    Y+A D+ C  +  N+  T
Sbjct: 174 NLVDCSNEEKYGNKG-CGGGYMTEAFQYIIDNGGIEADASYPYKATDEKCHYNSKNRAAT 232

Query: 608 CTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEK-MSNYTGGIYA 784
           C+          Y     GD       + +   +   GP+S GI A+      Y  G+Y 
Sbjct: 233 CSR---------YIQLPFGD------EDALKEAVATKGPVSVGIDASHSSFFFYKSGVYD 277

Query: 785 EYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHY 955
           +      +NH V V G+G   G +YW V+NSWG  +G++G++R+  +     G A Y
Sbjct: 278 DPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASY 334


>ref|NP_031828.2| cathepsin K precursor [Mus musculus].
          Length = 329

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 7/218 (3%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           +P S D+R      Y +  +NQ     CGSCWA  S  A+  ++   +K       LS Q
Sbjct: 115 VPDSIDYRKKG---YVTPVKNQG---QCGSCWAFSSAGALEGQL---KKKTGKLLALSPQ 165

Query: 455 HVIDCGNAG-SCEGGDDLPVWAYAHRHG-IPDETCNNYQAKDQVC--DKFNQCGTCTEFK 622
           +++DC      C GG     + Y  ++G I  E    Y  +D+ C  +   +   C  ++
Sbjct: 166 NLVDCVTENYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATAKAAKCRGYR 225

Query: 623 ECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYK- 793
           E  V                G EK +    A  GPIS  I A+      Y+ G+Y +   
Sbjct: 226 EIPV----------------GNEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENC 269

Query: 794 DQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGW 907
           D+  +NH V V G+G   G+++W ++NSWGE WG +G+
Sbjct: 270 DRDNVNHAVLVVGYGTQKGSKHWIIKNSWGESWGNKGY 307


>ref|NP_808330.1| cathepsin O precursor [Mus musculus].
          Length = 312

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 68/232 (29%), Positives = 99/232 (42%), Gaps = 6/232 (2%)
 Frame = +2

Query: 239 YPRPHEYLSPS-DLPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIK 415
           YP   +   P+  LP  +DWR+ + VN     RNQ +   CG CWA    SA+     I+
Sbjct: 86  YPAEGQRPIPNVSLPLRFDWRDKHVVN---PVRNQEM---CGGCWAFSVVSAIESARAIQ 139

Query: 416 RKGAWPSTLLSVQHVIDCG-NAGSCEGGDDLPV--WAYAHRHGIPDETCNNYQAKDQVCD 586
            K       LSVQ VIDC  N   C GG  L    W    +  +  ++   ++A +  C 
Sbjct: 140 GKSL---DYLSVQQVIDCSFNNSGCLGGSPLCALRWLNETQLKLVADSQYPFKAVNGQCR 196

Query: 587 KFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMS-- 760
            F Q       K+              Y      ++M   + + GP+   ++  + MS  
Sbjct: 197 HFPQSQAGVSVKDFSA-----------YNFRGQEDEMARALLSFGPL---VVIVDAMSWQ 242

Query: 761 NYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
           +Y GGI   +      NH V + G+  +G T YW VRNSWG  WG  G+  +
Sbjct: 243 DYLGGIIQHHCSSGEANHAVLITGFDRTGNTPYWMVRNSWGSSWGVEGYAHV 294


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,848,258
Number of extensions: 1143707
Number of successful extensions: 5436
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5359
Number of HSP's successfully gapped: 28
Length of query: 457
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 352
Effective length of database: 12,463,779
Effective search space: 4387250208
Effective search space used: 4387250208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000959
         (1371 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001116576.1| cathepsin Z [Sus scrofa].                         585   e-167
Alignment   gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ...   108   9e-24
Alignment   gi|NP_001090927.1| cathepsin B precursor [Sus scrofa].                92   5e-19
Alignment   gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].               92   9e-19
Alignment   gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].          92   9e-19
Alignment   gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].               86   6e-17
Alignment   gi|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus s...    85   1e-16
Alignment   gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].         82   5e-16
Alignment   gi|NP_999467.1| cathepsin K precursor [Sus scrofa].                   82   7e-16
Alignment   gi|XP_001927698.3| PREDICTED: tubulointerstitial nephritis anti...    79   6e-15

>ref|NP_001116576.1| cathepsin Z [Sus scrofa].
          Length = 304

 Score =  585 bits (1507), Expect = e-167
 Identities = 264/266 (99%), Positives = 264/266 (99%)
 Frame = +2

Query: 167 HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI 346
           HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI
Sbjct: 27  HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI 86

Query: 347 PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH 526
           PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH
Sbjct: 87  PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH 146

Query: 527 RHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE 706
           RHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE
Sbjct: 147 RHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAE 206

Query: 707 IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGE 886
           IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYW VRNSWGE
Sbjct: 207 IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWIVRNSWGE 266

Query: 887 PWGERGWMRIVTSTYKDGGGAHYNLA 964
           PWGERGWMRIVTSTYKDG GAHYNLA
Sbjct: 267 PWGERGWMRIVTSTYKDGRGAHYNLA 292


>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
          Length = 463

 Score =  108 bits (269), Expect = 9e-24
 Identities = 73/228 (32%), Positives = 99/228 (43%), Gaps = 10/228 (4%)
 Frame = +2

Query: 275 LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQ 454
           LP SWDWRNV G N+ +  RNQ     CGSC++  S   M  RI I       + +LS Q
Sbjct: 231 LPASWDWRNVRGTNFVTPVRNQ---ASCGSCYSFASMGMMEARIRILTNNT-QTPILSPQ 286

Query: 455 HVIDCGN-AGSCEGGDD-LPVWAYAHRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKEC 628
            V+ C   A  C GG   L    YA   G+ +E C  Y   D           CT  + C
Sbjct: 287 EVVSCSQYAQGCAGGFPYLIAGKYAQDFGLVEEACFPYTGTDS---------PCTVKEGC 337

Query: 629 HVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE------Y 790
               +     VG +        M  E+  +GP++      +   +Y  GIY        +
Sbjct: 338 FRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYRKGIYHHTGLRDPF 397

Query: 791 KDQAYINHIVSVAGWG--VSGGTEYWNVRNSWGEPWGERGWMRIVTST 928
                 NH V + G+G  ++ G +YW V+NSWG  WGE G+ RI   T
Sbjct: 398 NPFELTNHAVLLVGYGTDLASGMDYWIVKNSWGTSWGEDGYFRIRRGT 445


>ref|NP_001090927.1| cathepsin B precursor [Sus scrofa].
          Length = 335

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 68/259 (26%), Positives = 100/259 (38%), Gaps = 25/259 (9%)
 Frame = +2

Query: 218 TQLGHRTYPRPHEYLSPSDLPRSWD----WRNVNGVNYASVTRNQHIPQYCGSCWAHGST 385
           T LG    P+   + +   LP+S+D    W N   +      R+Q     CGSCWA G+ 
Sbjct: 61  TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEI---RDQGS---CGSCWAFGAV 114

Query: 386 SAMADRINIKRKGAWPSTLLSVQHVIDCGN--AGSCEGGDDLPVWAYAHRHGIPDET--- 550
            A++DRI I+  G     + +   +  CG+     C GG     W +  + G+       
Sbjct: 115 EAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYD 174

Query: 551 ----CNNYQ---------AKDQVCDKFNQCGTCTEFKECHVIQNYTLWK---VGDYGSVS 682
               C  Y               C        C++  E     +Y   K      Y    
Sbjct: 175 SHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISR 234

Query: 683 GREKMMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYW 862
             +++MAEIY NGP+            Y  G+Y          H + + GWGV  GT YW
Sbjct: 235 NEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYW 294

Query: 863 NVRNSWGEPWGERGWMRIV 919
            V NSW   WG+ G+ +I+
Sbjct: 295 LVGNSWNTDWGDNGFFKIL 313


>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
          Length = 331

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 77/251 (30%), Positives = 109/251 (43%), Gaps = 12/251 (4%)
 Frame = +2

Query: 239 YPRPHEYLSPSD--LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINI 412
           +PR   Y S  +  LP S DWR    V       +      CGSCWA  +  A+  ++ +
Sbjct: 101 WPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGS------CGSCWAFSAVGALEAQVKM 154

Query: 413 KRKGAWPSTLLSVQHVIDCG-----NAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKD 574
           K  G   S  LS Q+++DC      N G C GG     + Y    +GI  E    Y+A D
Sbjct: 155 KT-GRLVS--LSAQNLVDCSTEKYRNKG-CNGGFMTEAFQYIIDNNGIDSEASYPYKAVD 210

Query: 575 QVC--DKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMA 745
             C  D  N+  TC+ + E      Y L                 E  AN GP+S  I A
Sbjct: 211 GKCKYDSKNRAATCSRYTELPFADEYAL----------------KEAVANKGPVSVAIDA 254

Query: 746 TEK-MSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVT 922
                  Y  G+Y +      +NH V V G+G   G +YW V+NSWG  +G+ G++R+  
Sbjct: 255 KHSSFFFYRSGVYYDPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDGGYIRMAR 314

Query: 923 STYKDGGGAHY 955
           ++    G A+Y
Sbjct: 315 NSENHCGIANY 325


>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
          Length = 331

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 77/251 (30%), Positives = 109/251 (43%), Gaps = 12/251 (4%)
 Frame = +2

Query: 239 YPRPHEYLSPSD--LPRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINI 412
           +PR   Y S  +  LP S DWR    V       +      CGSCWA  +  A+  ++ +
Sbjct: 101 WPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGS------CGSCWAFSAVGALEAQVKM 154

Query: 413 KRKGAWPSTLLSVQHVIDCG-----NAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKD 574
           K  G   S  LS Q+++DC      N G C GG     + Y    +GI  E    Y+A D
Sbjct: 155 KT-GRLVS--LSAQNLVDCSTEKYRNKG-CNGGFMTEAFQYIIDNNGIDSEASYPYKAVD 210

Query: 575 QVC--DKFNQCGTCTEFKECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMA 745
             C  D  N+  TC+ + E      Y L                 E  AN GP+S  I A
Sbjct: 211 GKCKYDSKNRAATCSRYTELPFADEYAL----------------KEAVANKGPVSVAIDA 254

Query: 746 TEK-MSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVT 922
                  Y  G+Y +      +NH V V G+G   G +YW V+NSWG  +G+ G++R+  
Sbjct: 255 KHSSFFFYRSGVYYDPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDGGYIRMAR 314

Query: 923 STYKDGGGAHY 955
           ++    G A+Y
Sbjct: 315 NSENHCGIANY 325


>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
          Length = 335

 Score = 85.5 bits (210), Expect = 6e-17
 Identities = 64/220 (29%), Positives = 90/220 (40%), Gaps = 7/220 (3%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           P S DWR     N+ S  +NQ     CGSCW   +T A+   + I          L+ Q 
Sbjct: 117 PPSMDWRKKG--NFVSPVKNQGS---CGSCWTFSTTGALESAVAI---ATGKMLSLAEQQ 168

Query: 458 VIDCG---NAGSCEGGDDLPVWAYA-HRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKE 625
           ++DC    N   C+GG     + Y  +  GI  E    Y+ +D  C KF         K+
Sbjct: 169 LVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHC-KFQPDKAIAFVKD 227

Query: 626 CHVIQNYTLWKVGDYGSVSGREKMMAEIYANGPISCGIMATEKMSNYTGGIYAE---YKD 796
              + N T+         +  E M+  +    P+S     T     Y  GIY+    +K 
Sbjct: 228 ---VANITM---------NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKT 275

Query: 797 QAYINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRI 916
              +NH V   G+G   G  YW V+NSWG  WG  G+  I
Sbjct: 276 PDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLI 315


>ref|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus scrofa].
          Length = 411

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 63/198 (31%), Positives = 88/198 (44%), Gaps = 2/198 (1%)
 Frame = +2

Query: 320 ASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCG-NAGSCEGG 496
           A + R   +  +CG CWA    SA+     IK +   P  +LSVQ VIDC  N   C GG
Sbjct: 207 AWLERTPGLEPHCGGCWAFSVVSAVESAYAIKGQ---PLEVLSVQQVIDCSYNNYGCNGG 263

Query: 497 DDLPVWAYAHRHGIPDETCNNYQAKDQVCDKFNQCGTCTEFKECHVIQNYTLWKVGDYGS 676
             L    + ++  +   + + Y  K Q        G C  F   H   +   +   D+  
Sbjct: 264 STLNALYWLNKTQVKVVSDSEYPFKAQN-------GLCHYFSCSHSGVSIKDYSAYDF-- 314

Query: 677 VSGREKMMAE-IYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGT 853
            SG+E  MA+ +   GP+   I+      +Y GGI   +      NH V V G+  +G T
Sbjct: 315 -SGQEDEMAKTLLTLGPLIV-IVDAVSWQDYLGGIIQHHCSSGEANHAVLVTGFDKTGST 372

Query: 854 EYWNVRNSWGEPWGERGW 907
            YW VRNSWG  WG  G+
Sbjct: 373 PYWIVRNSWGSAWGIDGY 390


>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
          Length = 332

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 72/224 (32%), Positives = 104/224 (46%), Gaps = 11/224 (4%)
 Frame = +2

Query: 278 PRSWDWRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           P S DWR      Y +  +NQ    +CGSCWA  +T A+  ++  K         LS Q+
Sbjct: 115 PHSVDWREKG---YVTAVKNQG---HCGSCWAFSATGALEGQMFRKTSKL---ISLSEQN 165

Query: 458 VIDC----GNAGSCEGGDDLPVWAYAHRHG-IPDETCNNYQAKDQVCDKFNQCGTCTEFK 622
           ++DC    GN G C GG     + Y   +G +  E    Y  KD  C          ++K
Sbjct: 166 LVDCSWPEGNEG-CNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSC----------KYK 214

Query: 623 ECHVIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYKD 796
                 N T      Y  +  +EK + +  A  GPIS GI A+ E    Y+ GIY E + 
Sbjct: 215 PQSSAANDT-----GYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIYFEPQC 269

Query: 797 QAY-INHIVSVAGWGVSGG---TEYWNVRNSWGEPWGERGWMRI 916
            +  ++H V V G+GV G     +YW V+NSWG  WG  G++++
Sbjct: 270 SSEDLDHGVLVVGYGVEGAHSNNKYWLVKNSWGNTWGMDGYIKM 313


>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
          Length = 330

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 8/235 (3%)
 Frame = +2

Query: 287 WDWRNVNGVNYAS---VTRNQHIPQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQH 457
           W+ R  + ++Y     VT  ++  Q CGSCWA  S  A+  ++  K+ G   +  LS Q+
Sbjct: 112 WEGRTPDSIDYRKKGYVTPVKNQGQ-CGSCWAFSSVGALEGQLK-KKTGKLLN--LSPQN 167

Query: 458 VIDCGNAGS-CEGGDDLPVWAYAHRH-GIPDETCNNYQAKDQVCDKFNQCGTCTEFKECH 631
           ++DC +    C GG     + Y  ++ GI  E    Y  +D+ C  +N  G   + +   
Sbjct: 168 LVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDENC-MYNPTGKAAKCRGYR 226

Query: 632 VIQNYTLWKVGDYGSVSGREKMMAEIYAN-GPISCGIMAT-EKMSNYTGGIYAEYK-DQA 802
            I               G EK +    A  GP+S  I A+      Y+ G+Y +   +  
Sbjct: 227 EIPE-------------GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCNSD 273

Query: 803 YINHIVSVAGWGVSGGTEYWNVRNSWGEPWGERGWMRIVTSTYKDGGGAHYNLAS 967
            +NH V   G+G+  G ++W ++NSWGE WG +G+  I+ +  K+      NLAS
Sbjct: 274 NLNHAVLAVGYGIQKGKKHWIIKNSWGENWGNKGY--ILMARNKNNACGIANLAS 326


>ref|XP_001927698.3| PREDICTED: tubulointerstitial nephritis antigen [Sus scrofa].
          Length = 476

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 25/213 (11%)
 Frame = +2

Query: 356 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDC--GNAGSCEGGDDLPVWAYAHR 529
           C + WA  + S  ADRI I+ +G + + L S Q++I C   N   C  G     W Y  +
Sbjct: 240 CAASWAFSTASVAADRIAIQSEGRYTANL-SPQNLISCCAKNRHGCNSGSIDRAWWYLRK 298

Query: 530 HGIPDETC----NNYQAKDQVCDKFNQC---GTCTEFKEC--HVIQNYTLWKVGDYGSVS 682
            G+    C     +  A +  C   ++    G     K C  +  ++  +++      VS
Sbjct: 299 RGLVSHACYPLFKDQNATNNGCAMASRSDGRGKRHATKPCPNNFEKSNRIYQCSPPYRVS 358

Query: 683 GRE-KMMAEIYANGPISCGIMATEKMSNYTGGIYAEY--------KDQAYINHIVSVAGW 835
             E ++M EI  NGP+   +   E   +Y  GIY           K +    H V + GW
Sbjct: 359 SNETEIMREIMQNGPVQAIMQVHEDFFHYKTGIYRHVTSTNEESDKYRKLRTHAVKLTGW 418

Query: 836 GVSGGTE-----YWNVRNSWGEPWGERGWMRIV 919
           G   G +     +W   NSWG+ WGE G+ RI+
Sbjct: 419 GTLKGAQGRKEKFWIAANSWGKSWGENGYFRIL 451


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,949,446
Number of extensions: 1174906
Number of successful extensions: 4764
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4707
Number of HSP's successfully gapped: 14
Length of query: 457
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 355
Effective length of database: 8,804,438
Effective search space: 3125575490
Effective search space used: 3125575490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000959
         (1371 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                         359   3e-96

>Sscrofa_Chr17 
||          Length = 69701581

 Score =  359 bits (181), Expect = 3e-96
 Identities = 181/181 (100%)
 Strand = Plus / Minus

                                                                            
Query: 398      gacagaatcaacatcaagaggaagggggcctggccctccacgctgctgtctgtgcagcat 457
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66515890 gacagaatcaacatcaagaggaagggggcctggccctccacgctgctgtctgtgcagcat 66515831

                                                                            
Query: 458      gtcatcgactgcggcaacgccggctcctgcgaggggggcgacgacctgcccgtgtgggcc 517
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66515830 gtcatcgactgcggcaacgccggctcctgcgaggggggcgacgacctgcccgtgtgggcc 66515771

                                                                            
Query: 518      tacgcccaccggcacggcatcccggatgagacctgcaacaactaccaggccaaggaccaa 577
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66515770 tacgcccaccggcacggcatcccggatgagacctgcaacaactaccaggccaaggaccaa 66515711

                 
Query: 578      g 578
                |
Sbjct: 66515710 g 66515710



 Score =  331 bits (167), Expect = 6e-88
 Identities = 167/167 (100%)
 Strand = Plus / Minus

                                                                            
Query: 232      caggacgtacccccggcctcatgagtacctgtccccatcggatctgcccaggagctggga 291
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66519103 caggacgtacccccggcctcatgagtacctgtccccatcggatctgcccaggagctggga 66519044

                                                                            
Query: 292      ctggcgcaacgtgaatggggtcaactatgccagtgtcaccaggaaccagcacatccccca 351
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66519043 ctggcgcaacgtgaatggggtcaactatgccagtgtcaccaggaaccagcacatccccca 66518984

                                                               
Query: 352      gtactgcggctcctgctgggcccacggcagcaccagcgccatggctg 398
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66518983 gtactgcggctcctgctgggcccacggcagcaccagcgccatggctg 66518937



 Score =  323 bits (163), Expect = 1e-85
 Identities = 166/167 (99%)
 Strand = Plus / Minus

                                                                            
Query: 727      cagctgcggcatcatggccacggagaagatgtcgaactacaccggcggcatctacgccga 786
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66513548 cagctgcggcatcatggccacggagaagatgtcgaactacaccggcggcatctacgccga 66513489

                                                                            
Query: 787      gtacaaggaccaggcctacatcaaccacatcgtgtcggtggccgggtggggcgtcagcgg 846
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66513488 gtacaaggaccaggcctacatcaaccacatcgtgtcggtggccgggtggggcgtcagcgg 66513429

                                                               
Query: 847      cgggacggagtactggaatgtccggaattcgtggggcgagccctggg 893
                ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 66513428 cgggacggagtactggattgtccggaattcgtggggcgagccctggg 66513382



 Score =  303 bits (153), Expect = 1e-79
 Identities = 153/153 (100%)
 Strand = Plus / Minus

                                                                            
Query: 577      agtgtgtgacaagtttaaccagtgtggaacgtgcactgagttcaaagaatgccacgtcat 636
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66514265 agtgtgtgacaagtttaaccagtgtggaacgtgcactgagttcaaagaatgccacgtcat 66514206

                                                                            
Query: 637      ccagaactacaccctctggaaggttggcgactacggctccgtctccgggcgggagaagat 696
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66514205 ccagaactacaccctctggaaggttggcgactacggctccgtctccgggcgggagaagat 66514146

                                                 
Query: 697      gatggctgaaatctacgccaacgggcccatcag 729
                |||||||||||||||||||||||||||||||||
Sbjct: 66514145 gatggctgaaatctacgccaacgggcccatcag 66514113



 Score =  167 bits (84), Expect = 2e-38
 Identities = 120/128 (93%), Gaps = 3/128 (2%)
 Strand = Plus / Minus

                                                                            
Query: 892      gggtgaacgaggctggatgaggattgtgaccagcacctacaaagacggcgggggcgccca 951
                |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 66512392 gggtgagcgaggctggatgaggattgtgaccagcacctacaaagacggcaggggcgccca 66512333

                                                                            
Query: 952      ctacaaccttgcc-tcaaggaaaactgcacc-tccgggaccccatcgtttgaggccgac- 1008
                ||||||||||||| || |||| ||||||||| || |||||||||||||||||||||||| 
Sbjct: 66512332 ctacaaccttgccatcgaggagaactgcaccttcggggaccccatcgtttgaggccgacg 66512273

                        
Query: 1009     tctccgga 1016
                ||||||||
Sbjct: 66512272 tctccgga 66512265



 Score =  141 bits (71), Expect = 1e-30
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                            
Query: 165      tccacttccgcccgggctgcagctgctaccggcccctgcgcggggaccagcggacccagt 224
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66519585 tccacttccgcccgggctgcagctgctaccggcccctgcgcggggaccagcggacccagt 66519526

                           
Query: 225      tggggcacagg 235
                |||||||||||
Sbjct: 66519525 tggggcacagg 66519515


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,048,558
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 6
Length of query: 1371
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1350
Effective length of database: 2,808,413,156
Effective search space: 3791357760600
Effective search space used: 3791357760600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)