Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000967
(1159 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039759.1| dehydrogenase/reductase SDR family member 1 ... 488 e-138
Alignment gi|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 ... 67 4e-11
Alignment gi|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bo... 63 4e-10
Alignment gi|NP_001030260.1| dehydrogenase/reductase SDR family member 11... 62 1e-09
Alignment gi|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taur... 56 7e-08
Alignment gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta... 55 2e-07
Alignment gi|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [B... 54 3e-07
Alignment gi|NP_001077186.1| carbonyl reductase family member 4 [Bos taur... 54 3e-07
Alignment gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo... 52 8e-07
Alignment gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru... 51 2e-06
>ref|NP_001039759.1| dehydrogenase/reductase SDR family member 1 [Bos taurus].
Length = 312
Score = 488 bits (1257), Expect = e-138
Identities = 241/296 (81%), Positives = 263/296 (88%)
Frame = +2
Query: 272 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
M A M+GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTLQ TAQEAQSRGGRCVP
Sbjct: 1 MPATMKGQVCVVTGASRGIGRGIALQLCQAGATVYITGRHLDTLQATAQEAQSRGGRCVP 60
Query: 452 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
VVCDSSQESEV++LF+QV REQQGRLDVLVNNAYAGVQ I+NN KK+FWESPAS+WDD+N
Sbjct: 61 VVCDSSQESEVRNLFEQVDREQQGRLDVLVNNAYAGVQPILNNSKKSFWESPASIWDDIN 120
Query: 632 NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
NVGLRGHYLCSVY ARLMVPA YLF+VPYGVGKAACDR+AADCAQE
Sbjct: 121 NVGLRGHYLCSVYGARLMVPAGRGLIVIISSTGGLHYLFNVPYGVGKAACDRMAADCAQE 180
Query: 812 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
LRRHGVSYVSLWPGLVQTE LKE+M+K + A D +I+Q K FSSAETTEMSGKCVVALA
Sbjct: 181 LRRHGVSYVSLWPGLVQTELLKEHMMK-ENASDPLIKQFKFRFSSAETTEMSGKCVVALA 239
Query: 992 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
TDPNILSLSGKVLPSCDLARRYGL+DVDGRPVQDYLS+SS LSH+ +L W+AS+LP
Sbjct: 240 TDPNILSLSGKVLPSCDLARRYGLQDVDGRPVQDYLSLSSALSHVSNLGWLASYLP 295
>ref|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 [Bos taurus].
Length = 418
Score = 66.6 bits (161), Expect = 4e-11
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLD-------TLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA + I + T+ A+E ++ GG+
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQAHPKLPGTIYTAAEEIKAAGGK 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P + D E ++ S ++ A E+ G +D+LVNNA A ++ N E+P D
Sbjct: 68 ALPCIVDVRDEEQISSAVEK-AVEKFGGIDILVNNASA--ISLTNT-----LETPTKKVD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133
>ref|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bos taurus].
Length = 329
Score = 63.2 bits (152), Expect = 4e-10
Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
Frame = +2
Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 463
QG+V +TG G+G+G+ L GA I R +D L+VTA++ S+ G V + CD
Sbjct: 52 QGKVAFITGGGTGLGKGMTTCLSSLGAQCVIASRKIDVLKVTAEQISSQTGNKVHAIQCD 111
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
VQ+ + + G D+++NNA AG + R SP + W + ++ L
Sbjct: 112 VRDPDMVQNAVSETIK-VIGHPDIVINNA-AGNFISPSERL-----SP-NAWKTITDIVL 163
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLAADCAQELR 817
G ++ + ++ A + F VP KA + L A E
Sbjct: 164 NGTAFVTLAIGKELIKAQKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWG 223
Query: 818 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 997
++G+ + + PG ++T+ + + MI++I P T E L +D
Sbjct: 224 KYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRI--PCGRLGTVEELANLAAFLCSD 281
>ref|NP_001030260.1| dehydrogenase/reductase SDR family member 11 precursor [Bos
taurus].
Length = 255
Score = 61.6 bits (148), Expect = 1e-09
Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 9/201 (4%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
++ +VTGAS GIG +A L + G V R + ++ A E +S G G +P CD
Sbjct: 7 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 66
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S E ++ S+F V R Q +D+ +NNA R S W ++ NV +
Sbjct: 67 SNEEDILSMFSAV-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKEMFNVNVL 118
Query: 647 GHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVP-----YGVGKAACDRLAADCAQE 811
+C+ A + M + P Y K A L QE
Sbjct: 119 ALSICTREACQSMRERKVDDGHIININSMCGHRVPPPAETHFYSATKYAVTALTEGLRQE 178
Query: 812 LR--RHGVSYVSLWPGLVQTE 868
LR R + + PG+V+T+
Sbjct: 179 LREARSHIRATCISPGVVETQ 199
>ref|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taurus].
Length = 302
Score = 55.8 bits (133), Expect = 7e-08
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 257 LLL*VMVAPMQGQVCVVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSR 433
L+L + + + ++TG RGIGR +AL+ E GA + + GR L+ T +E +
Sbjct: 27 LVLPAKLRDLSRENVLITGGGRGIGRQLALEFAERGARKIVLWGRTEKCLKETTEEIRQM 86
Query: 434 GGRCVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNA 550
G C +CD EV + V RE+ G + +LVNNA
Sbjct: 87 GTECHYFICDVGNREEVYQTAKAV-REKVGDITILVNNA 124
>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
Length = 270
Score = 54.7 bits (130), Expect = 2e-07
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 2/208 (0%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSS 469
G+V +VTG RGIG GI E+GA V I + D + A E + G V ++CD +
Sbjct: 9 GKVVIVTGGGRGIGAGIVRAFVESGAQVVICDK--DEARGRAVERELPG--TVFLLCDVT 64
Query: 470 QESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFW--ESPASVWDDVNNVGL 643
+E +V++L + R + GRLD +VNNA W E+ A + + + L
Sbjct: 65 REEDVRTLVSETIR-RFGRLDCIVNNA--------GYHPPPQWPEETSAQGFRQLLELNL 115
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQELRRH 823
G Y + A + + +VPY K A + A + ++
Sbjct: 116 LGTYTLTKLALPHLRKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQY 175
Query: 824 GVSYVSLWPGLVQTETLKEYMIKADTAD 907
GV + PG + T +E + A T D
Sbjct: 176 GVRVNCISPGNIWTPLWEE--LAASTPD 201
>ref|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [Bos taurus].
Length = 736
Score = 53.9 bits (128), Expect = 3e-07
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYI---------TGRHLDTLQVTAQEAQSRGGR 442
G+V +VTGA G+GR AL E GA+V + G+ + +E + +GG+
Sbjct: 9 GRVVLVTGAGGGLGRAYALAFAERGASVVVNDLRGDFTGVGKGSLSADKVVEEIRRKGGK 68
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
V DS +E E + A + GR+D+++NN AG+ R ++F WD
Sbjct: 69 AV-ANYDSVEEGE---KIVKTALDAFGRIDIVINN--AGIL-----RDRSFSRISDEDWD 117
Query: 623 DVNNVGLRGHYL 658
+ V LRG +L
Sbjct: 118 KIQRVHLRGSFL 129
>ref|NP_001077186.1| carbonyl reductase family member 4 [Bos taurus].
Length = 237
Score = 53.5 bits (127), Expect = 3e-07
Identities = 30/86 (34%), Positives = 51/86 (59%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQ 472
+VC V G SRGIGR +A + + G + I R+L+ + A + GG + + CD ++
Sbjct: 3 KVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLEGARAAAGDL---GGDHLALSCDVAK 59
Query: 473 ESEVQSLFQQVAREQQGRLDVLVNNA 550
E +VQ+ F+++ + GR++ LVN A
Sbjct: 60 EHDVQNTFEEI-EKNLGRVNFLVNAA 84
>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
Length = 260
Score = 52.4 bits (124), Expect = 8e-07
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 1/196 (0%)
Frame = +2
Query: 281 PMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVC 460
P+ +V +VT ++ GIG IA +L + GA V ++ R + + G VC
Sbjct: 11 PLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVC 70
Query: 461 DSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVG 640
+ + + L A + G +D+L++NA ++ + + P VWD + +V
Sbjct: 71 HVGKAEDRERLVA-TAVKLHGGVDILISNA------AVSPFFGSLMDVPEEVWDKILDVN 123
Query: 641 LRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSV-PYGVGKAACDRLAADCAQELR 817
++ L + M S+ PY V K A L + A EL
Sbjct: 124 VKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELA 183
Query: 818 RHGVSYVSLWPGLVQT 865
V L PGL++T
Sbjct: 184 ESNVRVNCLAPGLIRT 199
>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
Length = 309
Score = 51.2 bits (121), Expect = 2e-06
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 1/180 (0%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGG-RCVPVVCDS 466
G++ ++TGA G+GR +AL+ + G+ + + ++ + T + A G R CD
Sbjct: 40 GEIVLITGAGSGLGRLLALKFAQLGSVLVLWDISQESNEETCKMAVEAGATRVYAYTCDC 99
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S++ E+ + QV +E G +L+NNA I+ RK F + P + + +V +
Sbjct: 100 SRKEEIYRVANQVKKE-VGDASILINNA-----GIVTGRK--FMDCPDELIEKSLDVNFK 151
Query: 647 GHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQELRRHG 826
H ++ + +PA +L + G + LA CA + +G
Sbjct: 152 SH----IWTYKAFLPAMIANNRG--------HLVCISSSAGLIGMNGLADYCASKFAAYG 199
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,939,099
Number of extensions: 1745996
Number of successful extensions: 6527
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6472
Number of HSP's successfully gapped: 13
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000967
(1159 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537393.2| PREDICTED: similar to dehydrogenase/reductase (... 430 e-120
Alignment gi|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 ... 62 8e-10
Alignment gi|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase... 62 8e-10
Alignment gi|XP_853611.1| PREDICTED: similar to hydroxysteroid dehydrogen... 62 8e-10
Alignment gi|XP_532035.2| PREDICTED: similar to hydroxysteroid dehydrogen... 62 8e-10
Alignment gi|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Can... 59 1e-08
Alignment gi|XP_867482.1| PREDICTED: similar to short-chain dehydrogenase... 59 1e-08
Alignment gi|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase... 59 1e-08
Alignment gi|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl... 57 3e-08
Alignment gi|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl... 57 4e-08
>ref|XP_537393.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 1
[Canis familiaris].
Length = 296
Score = 430 bits (1105), Expect = e-120
Identities = 215/296 (72%), Positives = 241/296 (81%)
Frame = +2
Query: 272 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
M A M+G+VCVVTGASRGIGRGIALQLC+AGATVYITGRH+DTLQ TA+E
Sbjct: 1 MAASMKGKVCVVTGASRGIGRGIALQLCQAGATVYITGRHMDTLQATAEE---------- 50
Query: 452 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
ESEVQ LF+QV +EQQGRLDVLVNNAYAGV AI+ N KAFWESPAS+WDD+N
Sbjct: 51 -------ESEVQRLFEQVDQEQQGRLDVLVNNAYAGVPAIMKNINKAFWESPASIWDDIN 103
Query: 632 NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
NVGLRGHYLCSVY ARLMVPA QY F+V YGVGKAACDRLAADCAQE
Sbjct: 104 NVGLRGHYLCSVYGARLMVPAGQGLIVVISSIGGLQYFFNVSYGVGKAACDRLAADCAQE 163
Query: 812 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
LRRHGVSYVSLWPG+VQTE +KE ++K + DD +++Q++ FSSAETTEMSGKCVVALA
Sbjct: 164 LRRHGVSYVSLWPGMVQTELVKEVVVKNENTDDPLLKQLRSNFSSAETTEMSGKCVVALA 223
Query: 992 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
TDPNILSLSGKVLPSCDLARRY L+DVDGRP+QDYLS+SSVLSH SL W+AS+LP
Sbjct: 224 TDPNILSLSGKVLPSCDLARRYSLQDVDGRPIQDYLSLSSVLSHASSLGWLASYLP 279
>ref|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 [Canis lupus
familiaris].
Length = 418
Score = 62.4 bits (150), Expect = 8e-10
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHL-------DTLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA + I + T+ A+E ++ GG+
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEEIEAAGGK 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P D E ++ + ++ A E+ G +D+LVNNA A ++ N E+P D
Sbjct: 68 ALPCSVDVRDEQQISNAVEK-AVERFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133
>ref|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase, mitochondrial
precursor (2,4-dienoyl-CoA reductase [NADPH])
(4-enoyl-CoA reductase [NADPH]) [Canis familiaris].
Length = 370
Score = 62.4 bits (150), Expect = 8e-10
Identities = 60/258 (23%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
Frame = +2
Query: 254 PLLL*VMVAP--MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ 427
P L M+ P QG+V +TG G+G+G+ L GA I R++D L+ TA++
Sbjct: 80 PPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTALLSSLGAQCVIASRNIDVLKDTAEQIS 139
Query: 428 SRGGRCVPVV-CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWES 604
S+ G V + CD VQ ++ + AG AI+ N + S
Sbjct: 140 SQTGNKVHAIQCDIRNPEMVQKTVSELIK-------------VAGHPAIVINNAAGNFIS 186
Query: 605 P-----ASVWDDVNNVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYG 763
P A+ W + ++ L G ++ + ++ A + F VP
Sbjct: 187 PTERLSANAWKTITDIVLNGTAYVTLEIGKQLIKAQKGAAFLAITTIFAESGSGFVVPSA 246
Query: 764 VGKAACDRLAADCAQELRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFS 943
KA + + A E ++G+ + + PG ++T+ + T + MI++I P
Sbjct: 247 SAKAGVEAMNKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKDMIDRI--PCG 304
Query: 944 SAETTEMSGKCVVALATD 997
T E L +D
Sbjct: 305 RLGTVEELANLAAFLCSD 322
>ref|XP_853611.1| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 2
[Canis familiaris].
Length = 418
Score = 62.4 bits (150), Expect = 8e-10
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHL-------DTLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA + I + T+ A+E ++ GG+
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEEIEAAGGK 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P D E ++ + ++ A E+ G +D+LVNNA A ++ N E+P D
Sbjct: 68 ALPCSVDVRDEQQISNAVEK-AVERFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133
>ref|XP_532035.2| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 1
[Canis familiaris].
Length = 417
Score = 62.4 bits (150), Expect = 8e-10
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHL-------DTLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA + I + T+ A+E ++ GG+
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEEIEAAGGK 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P D E ++ + ++ A E+ G +D+LVNNA A ++ N E+P D
Sbjct: 68 ALPCSVDVRDEQQISNAVEK-AVERFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133
>ref|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Canis lupus familiaris].
Length = 270
Score = 58.5 bits (140), Expect = 1e-08
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 2/194 (1%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSS 469
G+V VVTG RGIG GIA + GA V I + + QE V ++CD +
Sbjct: 9 GKVVVVTGGGRGIGAGIARAFVQNGAQVVICDKDESGGRALEQELTG----TVFILCDVT 64
Query: 470 QESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFW--ESPASVWDDVNNVGL 643
+E +VQ+L + R + GRLD +VNNA W E+ A + + + L
Sbjct: 65 REKDVQTLISETVR-RFGRLDCVVNNA--------GYHPPPQWPEETSAEGFRQLLELNL 115
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQELRRH 823
G Y + +A + + + +VPY K A + A + R+
Sbjct: 116 LGTYTVTKFALPHLRKSQGNIINISSLVGAIGQVQAVPYVATKGAVTAMTKALALDESRY 175
Query: 824 GVSYVSLWPGLVQT 865
GV + PG + T
Sbjct: 176 GVRVNCISPGNIWT 189
>ref|XP_867482.1| PREDICTED: similar to short-chain dehydrogenase/reductase isoform 2
[Canis familiaris].
Length = 214
Score = 58.5 bits (140), Expect = 1e-08
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
++ +VTGAS GIG +A L + G V R + ++ A E +S G G +P CD
Sbjct: 26 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPHRCDL 85
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S E ++ S+F V R Q +D+ +NNA R S W D+ NV +
Sbjct: 86 SSEEDILSMFSAV-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKDMFNVNVL 137
Query: 647 GHYLCSVYAARLM 685
+C+ A + M
Sbjct: 138 ALSICTREAYQSM 150
>ref|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase/reductase isoform 1
[Canis familiaris].
Length = 274
Score = 58.5 bits (140), Expect = 1e-08
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
++ +VTGAS GIG +A L + G V R + ++ A E +S G G +P CD
Sbjct: 26 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPHRCDL 85
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S E ++ S+F V R Q +D+ +NNA R S W D+ NV +
Sbjct: 86 SSEEDILSMFSAV-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKDMFNVNVL 137
Query: 647 GHYLCSVYAARLM 685
+C+ A + M
Sbjct: 138 ALSICTREAYQSM 150
>ref|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
[Canis familiaris].
Length = 303
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ-----SRGGRCVPVV 457
Q+ +VTG + GIG+ IA +L G V I R+ D L+ TA+E + + + P+
Sbjct: 19 QLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASLPPTNQAQVTPIK 78
Query: 458 CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNV 637
C+ +E EV +L + E G+++ LVNN G Q + A A W V +
Sbjct: 79 CNIRKEEEVNNLVRSTL-EIYGKINFLVNN--GGGQFV-----AAMEHINAKGWHAVIEI 130
Query: 638 GLRG-HYLC-SVYAARLMVP 691
L G Y+C +VY + + P
Sbjct: 131 NLTGTFYMCKAVYNSWMKEP 150
>ref|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
isoform 2 [Canis familiaris].
Length = 303
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ-----SRGGRCVPVV 457
Q+ +VTG + GIG+ IA +L G V I R+ D L+ TA+E + + + P+
Sbjct: 19 QLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASLPPTNKAQVTPIK 78
Query: 458 CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWES 604
C+ +E EV +L + E G+++ LVNN A + + W +
Sbjct: 79 CNIRKEEEVNNLVRSTL-EIYGKINFLVNNGGGQFMAAMEHINAKGWHA 126
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,111,606
Number of extensions: 1791246
Number of successful extensions: 6529
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6479
Number of HSP's successfully gapped: 21
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000967
(1159 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129522.1| dehydrogenase/reductase SDR family member 1 ... 479 e-135
Alignment gi|NP_612461.1| dehydrogenase/reductase SDR family member 1 [Ho... 479 e-135
Alignment gi|NP_115679.2| hydroxysteroid dehydrogenase-like protein 2 iso... 64 2e-10
Alignment gi|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo s... 63 6e-10
Alignment gi|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precur... 62 8e-10
Alignment gi|NP_077284.2| dehydrogenase/reductase SDR family member 11 pr... 59 9e-09
Alignment gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme... 55 2e-07
Alignment gi|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 55 2e-07
Alignment gi|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 55 2e-07
Alignment gi|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sap... 54 4e-07
>ref|NP_001129522.1| dehydrogenase/reductase SDR family member 1 [Homo sapiens].
Length = 313
Score = 479 bits (1232), Expect = e-135
Identities = 234/296 (79%), Positives = 257/296 (86%)
Frame = +2
Query: 272 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
M APM GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTL+V AQEAQS GG+CVP
Sbjct: 1 MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVP 60
Query: 452 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
VVCDSSQESEV+SLF+QV REQQGRLDVLVNNAYAGVQ I+N R KAFWE+PAS+WDD+N
Sbjct: 61 VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDIN 120
Query: 632 NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
NVGLRGHY CSVY ARLMVPA QY+F+VPYGVGKAACD+LAADCA E
Sbjct: 121 NVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVPYGVGKAACDKLAADCAHE 180
Query: 812 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
LRRHGVS VSLWPG+VQTE LKE+M K + D +++Q K FSSAETTE+SGKCVVALA
Sbjct: 181 LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA 240
Query: 992 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLS+SSVLSH+ L W+AS+LP
Sbjct: 241 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSLSSVLSHVSGLGWLASYLP 296
>ref|NP_612461.1| dehydrogenase/reductase SDR family member 1 [Homo sapiens].
Length = 313
Score = 479 bits (1232), Expect = e-135
Identities = 234/296 (79%), Positives = 257/296 (86%)
Frame = +2
Query: 272 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
M APM GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTL+V AQEAQS GG+CVP
Sbjct: 1 MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVP 60
Query: 452 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
VVCDSSQESEV+SLF+QV REQQGRLDVLVNNAYAGVQ I+N R KAFWE+PAS+WDD+N
Sbjct: 61 VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDIN 120
Query: 632 NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
NVGLRGHY CSVY ARLMVPA QY+F+VPYGVGKAACD+LAADCA E
Sbjct: 121 NVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVPYGVGKAACDKLAADCAHE 180
Query: 812 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
LRRHGVS VSLWPG+VQTE LKE+M K + D +++Q K FSSAETTE+SGKCVVALA
Sbjct: 181 LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA 240
Query: 992 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLS+SSVLSH+ L W+AS+LP
Sbjct: 241 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSLSSVLSHVSGLGWLASYLP 296
>ref|NP_115679.2| hydroxysteroid dehydrogenase-like protein 2 isoform 1 [Homo
sapiens].
Length = 418
Score = 64.3 bits (155), Expect = 2e-10
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRH-------LDTLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA + I + L T+ A+E ++ GG+
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGK 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P + D E ++ + ++ A ++ G +D+LVNNA A ++ N ++P D
Sbjct: 68 ALPCIVDVRDEQQISAAVEK-AIKKFGGIDILVNNASA--ISLTNT-----LDTPTKRLD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLAS 133
>ref|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens].
Length = 303
Score = 62.8 bits (151), Expect = 6e-10
Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 12/211 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ-----SRGGRCV 448
+QGQV +VTG + GIG+ I +L E G+ V I R L+ L+ A E Q ++ R +
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 449 PVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPA-----S 613
P+ C+ E EV +L + + G+++ LVNN G Q + SPA
Sbjct: 76 PIQCNIRNEEEVNNLVKSTL-DTFGKINFLVNN--GGGQFL----------SPAEHISSK 122
Query: 614 VWDDVNNVGLRG-HYLC-SVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDR 787
W V L G Y+C +VY++ + + +V G +A
Sbjct: 123 GWHAVLETNLTGTFYMCKAVYSS--WMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYN 180
Query: 788 LAADCAQELRRHGVSYVSLWPGLVQTETLKE 880
L A E G+ + PG++ ++T E
Sbjct: 181 LTKSLALEWACSGIRINCVAPGVIYSQTAVE 211
>ref|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Homo sapiens].
Length = 335
Score = 62.4 bits (150), Expect = 8e-10
Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
Frame = +2
Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 463
QG+V +TG G+G+G+ L GA I R +D L+ TA++ S+ G V + CD
Sbjct: 58 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 117
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
VQ+ ++ + G ++++NNA I+ ++ SP + W + ++ L
Sbjct: 118 VRDPDMVQNTVSELIK-VAGHPNIVINNAAGN---FISPTERL---SP-NAWKTITDIVL 169
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLAADCAQELR 817
G ++ + ++ A + F VP KA + ++ A E
Sbjct: 170 NGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG 229
Query: 818 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 997
++G+ + + PG ++T+ + T + MI +I P T E L +D
Sbjct: 230 KYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI--PCGRLGTVEELANLAAFLCSD 287
>ref|NP_077284.2| dehydrogenase/reductase SDR family member 11 precursor [Homo
sapiens].
Length = 260
Score = 58.9 bits (141), Expect = 9e-09
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
++ +VTGAS GIG +A L + G V R + ++ A E +S G G +P CD
Sbjct: 12 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 71
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S E ++ S+F + R Q +D+ +NNA R S W D+ NV +
Sbjct: 72 SNEEDILSMFSAI-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKDMFNVNVL 123
Query: 647 GHYLCSVYAARLM 685
+C+ A + M
Sbjct: 124 ALSICTREAYQSM 136
>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 54.7 bits (130), Expect = 2e-07
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 2/198 (1%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
+QG+ +VTGAS+GIGR +A L + GA V +T R +TLQ G +
Sbjct: 32 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 91
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
+ ++ F A + G LD+L+ N I N F + V + V
Sbjct: 92 TMEDMTFAEQFVAQAGKLMGGLDMLILN------HITNTSLNLFHDDIHHVRKSM-EVNF 144
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE--LR 817
+ + +V A ++ + Y Y K A D + +E +
Sbjct: 145 LSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204
Query: 818 RHGVSYVSLWPGLVQTET 871
R VS GL+ TET
Sbjct: 205 RVNVSITLCVLGLIDTET 222
>ref|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 54.7 bits (130), Expect = 2e-07
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 2/198 (1%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
+QG+ +VTGAS+GIGR +A L + GA V +T R +TLQ G +
Sbjct: 32 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 91
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
+ ++ F A + G LD+L+ N I N F + V + V
Sbjct: 92 TMEDMTFAEQFVAQAGKLMGGLDMLILN------HITNTSLNLFHDDIHHVRKSM-EVNF 144
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE--LR 817
+ + +V A ++ + Y Y K A D + +E +
Sbjct: 145 LSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204
Query: 818 RHGVSYVSLWPGLVQTET 871
R VS GL+ TET
Sbjct: 205 RVNVSITLCVLGLIDTET 222
>ref|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
Length = 292
Score = 54.7 bits (130), Expect = 2e-07
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 2/198 (1%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
+QG+ +VTGAS+GIGR +A L + GA V +T R +TLQ G +
Sbjct: 32 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 91
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
+ ++ F A + G LD+L+ N I N F + V + V
Sbjct: 92 TMEDMTFAEQFVAQAGKLMGGLDMLILN------HITNTSLNLFHDDIHHVRKSM-EVNF 144
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE--LR 817
+ + +V A ++ + Y Y K A D + +E +
Sbjct: 145 LSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204
Query: 818 RHGVSYVSLWPGLVQTET 871
R VS GL+ TET
Sbjct: 205 RVNVSITLCVLGLIDTET 222
>ref|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sapiens].
Length = 302
Score = 53.5 bits (127), Expect = 4e-07
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 257 LLL*VMVAPMQGQVCVVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSR 433
L+L + + + ++TG RGIGR +A + E GA + + GR L+ T +E +
Sbjct: 27 LVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQM 86
Query: 434 GGRCVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNA 550
G C +CD EV + V RE+ G + +LVNNA
Sbjct: 87 GTECHYFICDVGNREEVYQTAKAV-REKVGDITILVNNA 124
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,036,703
Number of extensions: 1749447
Number of successful extensions: 6580
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6532
Number of HSP's successfully gapped: 19
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000967
(1159 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081095.2| dehydrogenase/reductase SDR family member 1 [Mu... 469 e-132
Alignment gi|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mu... 67 3e-11
Alignment gi|NP_808232.2| dehydrogenase/reductase SDR family member 11 pr... 59 6e-09
Alignment gi|NP_663570.2| carbonyl reductase family member 4 [Mus musculu... 58 2e-08
Alignment gi|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precur... 55 8e-08
Alignment gi|NP_001165895.1| short-chain dehydrogenase/reductase 3 isofor... 54 2e-07
Alignment gi|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1... 54 2e-07
Alignment gi|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus]. 52 1e-06
Alignment gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu... 51 2e-06
Alignment gi|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus ... 51 2e-06
>ref|NP_081095.2| dehydrogenase/reductase SDR family member 1 [Mus musculus].
Length = 313
Score = 469 bits (1206), Expect = e-132
Identities = 228/296 (77%), Positives = 256/296 (86%)
Frame = +2
Query: 272 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
MVAPM+GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTL+ TAQEAQS GGRCVP
Sbjct: 1 MVAPMKGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRATAQEAQSLGGRCVP 60
Query: 452 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
VVCDSSQESEV+SLF+QV REQ+GRLDVLVNNAYAGVQAI+N K+FWE PAS+WDD+N
Sbjct: 61 VVCDSSQESEVKSLFEQVDREQKGRLDVLVNNAYAGVQAILNTTNKSFWEVPASIWDDIN 120
Query: 632 NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
NVGLRGHYLCSVY ARLMVPA Q++F+VPYGVGKAACDRLAADCA E
Sbjct: 121 NVGLRGHYLCSVYGARLMVPAGKGLIVIVSSPGGLQHMFNVPYGVGKAACDRLAADCAHE 180
Query: 812 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
LRRHGVSYVSLWPGLVQTE +KE+M K DT +D + +++K FSSAE+ EMSGKCVVALA
Sbjct: 181 LRRHGVSYVSLWPGLVQTEMVKEFMAKEDTPEDPLFKKMKPDFSSAESPEMSGKCVVALA 240
Query: 992 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
TDPNIL+LSGKVLPSCDLARRYGL+D+DGRPV+DY S+ LS + SL W+ SFLP
Sbjct: 241 TDPNILNLSGKVLPSCDLARRYGLKDIDGRPVKDYFSLGYALSQVSSLGWLNSFLP 296
>ref|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mus musculus].
Length = 490
Score = 67.0 bits (162), Expect = 3e-11
Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYI----TGRH---LDTLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA + I T +H L T+ A+E ++ GG
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTQKHPKLLGTIYTAAEEIEAAGGT 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P V D E ++ S ++ A E+ G +D+LVNNA A ++ N ++P D
Sbjct: 68 ALPCVVDVRDEQQINSAVEK-AVEKFGGIDILVNNASA--ISLTNT-----LDTPTKRVD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133
>ref|NP_808232.2| dehydrogenase/reductase SDR family member 11 precursor [Mus
musculus].
Length = 260
Score = 59.3 bits (142), Expect = 6e-09
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
++ +VTGAS GIG +A L + G V R + ++ A E +S G G +P CD
Sbjct: 12 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 71
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S E ++ S+F V R Q +D+ +NNA R S W D+ NV +
Sbjct: 72 SNEEDILSMFSAV-RSQHSGVDICINNAGMA-------RPDTLLSGSTSGWKDMFNVNVL 123
Query: 647 GHYLCSVYAARLM 685
+C+ A + M
Sbjct: 124 ALSICTREAYQSM 136
>ref|NP_663570.2| carbonyl reductase family member 4 [Mus musculus].
Length = 236
Score = 57.8 bits (138), Expect = 2e-08
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQ 472
+VC V G SRGIGR +A + + G + I R+L+ +VTA E GG + CD ++
Sbjct: 3 KVCAVFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGEL---GGNHLAFRCDVAK 59
Query: 473 ESEVQSLFQQVAREQQGRLDVLVNNA 550
E +VQS FQ++ + G ++ LVN A
Sbjct: 60 EQDVQSTFQEM-EKHLGPVNFLVNAA 84
>ref|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Mus musculus].
Length = 335
Score = 55.5 bits (132), Expect = 8e-08
Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 3/240 (1%)
Frame = +2
Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 463
QG+V +TG G+G+ + L GA I R++D L+ TA+E S+ G V + CD
Sbjct: 58 QGKVAFITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHAIRCD 117
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
V + ++ + G DV++NNA N + W + ++ L
Sbjct: 118 VRDPDMVHNTVLELIK-VAGHPDVVINNA-------AGNFISPSERLTPNGWKTITDIVL 169
Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLAADCAQELR 817
G ++ + ++ A + F +P K+ + + A E
Sbjct: 170 NGTAYVTLEIGKQLIKAQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWG 229
Query: 818 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 997
R+G+ + + PG ++T+ + + MI++I P T E L +D
Sbjct: 230 RYGMRFNIIQPGPIKTKGAFSRLDPTGRFEKEMIDRI--PCGRLGTMEELANLATFLCSD 287
>ref|NP_001165895.1| short-chain dehydrogenase/reductase 3 isoform 2 [Mus musculus].
Length = 276
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 VVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQES 478
++TG RGIGR +A + E GA + + GR L+ T +E + G C +CD
Sbjct: 16 LITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNRE 75
Query: 479 EVQSLFQQVAREQQGRLDVLVNNA 550
EV + + V RE+ G + +LVNNA
Sbjct: 76 EVYQMAKAV-REKVGDITILVNNA 98
>ref|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1 [Mus musculus].
Length = 302
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 VVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQES 478
++TG RGIGR +A + E GA + + GR L+ T +E + G C +CD
Sbjct: 42 LITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNRE 101
Query: 479 EVQSLFQQVAREQQGRLDVLVNNA 550
EV + + V RE+ G + +LVNNA
Sbjct: 102 EVYQMAKAV-REKVGDITILVNNA 124
>ref|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus].
Length = 309
Score = 51.6 bits (122), Expect = 1e-06
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG-GRCVPVVCDS 466
G++ ++TGA G+GR +ALQ GA + + + + T Q A+ G R CD
Sbjct: 40 GEIVLITGAGSGLGRLLALQFARLGAVLVLWDVNKEANDETHQLAREAGAARVHAYTCDC 99
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
S+ EV + QV +E G + +L+NNA I+ R F + P + + +V +
Sbjct: 100 SRREEVYRVADQVKKE-VGDVSILINNA-----GIVTGRN--FLDCPDDLMEKSFDVNFK 151
Query: 647 GH 652
H
Sbjct: 152 AH 153
>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
Length = 298
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/87 (31%), Positives = 49/87 (56%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSS 469
G++ ++TGA GIGR A + + + + + + ++ TA + + G + P V D S
Sbjct: 36 GEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQAHPFVVDCS 95
Query: 470 QESEVQSLFQQVAREQQGRLDVLVNNA 550
Q E+ S ++V +E+ G + +LVNNA
Sbjct: 96 QREEIYSAAKKV-KEEVGDVSILVNNA 121
>ref|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus musculus].
Length = 735
Score = 51.2 bits (121), Expect = 2e-06
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Frame = +2
Query: 272 MVAPMQ--GQVCVVTGASRGIGRGIALQLCEAGATVYIT---------GRHLDTLQVTAQ 418
M +P++ G+V +VTGA G+GR AL E GA V + G+
Sbjct: 1 MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVIVNDLGGDFKGIGKGSSAADKVVA 60
Query: 419 EAQSRGGRCVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFW 598
E + +GG+ V + E + A + GR+DV+VNN AG+ R ++F
Sbjct: 61 EIRRKGGKAVA----NYDSVEAGEKLVKTALDTFGRIDVVVNN--AGIL-----RDRSFS 109
Query: 599 ESPASVWDDVNNVGLRGHY 655
WD ++ V LRG +
Sbjct: 110 RISDEDWDIIHRVHLRGSF 128
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,489,004
Number of extensions: 1453309
Number of successful extensions: 5517
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5475
Number of HSP's successfully gapped: 16
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000967
(1159 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128591.1| PREDICTED: dehydrogenase/reductase SDR famil... 560 e-160
Alignment gi|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 ... 67 2e-11
Alignment gi|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Su... 64 2e-10
Alignment gi|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR famil... 62 6e-10
Alignment gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su... 56 4e-08
Alignment gi|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ... 54 1e-07
Alignment gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ... 52 8e-07
Alignment gi|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus ... 50 2e-06
Alignment gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof... 49 4e-06
Alignment gi|NP_001177177.1| 15-hydroxyprostaglandin dehydrogenase [Sus s... 49 4e-06
>ref|XP_003128591.1| PREDICTED: dehydrogenase/reductase SDR family member 1-like [Sus
scrofa].
Length = 313
Score = 560 bits (1442), Expect = e-160
Identities = 282/296 (95%), Positives = 282/296 (95%)
Frame = +2
Query: 272 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP
Sbjct: 1 MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 60
Query: 452 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN
Sbjct: 61 VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 120
Query: 632 NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
NVGLRGHYLCSVYAARLMVPA QYLFSVPYGVGKAACDRLAADCAQE
Sbjct: 121 NVGLRGHYLCSVYAARLMVPAGRGLIVIISSIGGLQYLFSVPYGVGKAACDRLAADCAQE 180
Query: 812 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA
Sbjct: 181 LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 240
Query: 992 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP
Sbjct: 241 TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 296
>ref|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 [Sus scrofa].
Length = 418
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLD-------TLQVTAQEAQSRGGR 442
+ G +TGASRGIG+ IAL+ + GA V I + T+ A+E Q+ GG+
Sbjct: 8 LAGCTVFITGASRGIGKAIALKAAKDGANVVIAAKTTQTHPKLQGTIYTAAEEIQAAGGK 67
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
+P V D E ++ ++ A E+ G +D+LVNNA A ++ N E+P D
Sbjct: 68 ALPCVVDVRDEQQISDAVEK-AVEKFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119
Query: 623 DVNNVGLRGHYLCS 664
+ NV RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133
>ref|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Sus scrofa].
Length = 328
Score = 63.9 bits (154), Expect = 2e-10
Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 5/248 (2%)
Frame = +2
Query: 269 VMVAP--MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGR 442
VM+ P QG++ +TG GIG+ + L GA I R++D L+ TA+E S+ G
Sbjct: 43 VMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGN 102
Query: 443 CVPVV-CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVW 619
V + CD + VQ+ ++ + G D+++NNA AG + R SP + W
Sbjct: 103 KVHAIQCDVRDPNMVQNTVSELIK-VIGHPDIVINNA-AGNFISPSERL-----SP-NAW 154
Query: 620 DDVNNVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLA 793
+ ++ L G ++ + ++ A + F VP KA + ++
Sbjct: 155 KTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMS 214
Query: 794 ADCAQELRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGK 973
A E ++G+ + + PG ++T+ + + MI++I P T E
Sbjct: 215 KSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRI--PCGRLGTVEELAN 272
Query: 974 CVVALATD 997
L +D
Sbjct: 273 LATFLCSD 280
>ref|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR family member 11-like [Sus
scrofa].
Length = 330
Score = 62.0 bits (149), Expect = 6e-10
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Frame = +2
Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVC 460
+G++ +VTGAS GIG +A L + G V R + ++ A E +S G G +P C
Sbjct: 80 RGRLALVTGASGGIGAAVARALVQHGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYKC 139
Query: 461 DSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVG 640
D S E ++ S+F + R Q +D+ +NNA R + S W D+ NV
Sbjct: 140 DLSNEEDILSMFSAI-RSQHSGVDICINNAGLA-------RPDSLLSGSTSGWKDMFNVN 191
Query: 641 LRGHYLCSVYAARLM 685
+ +C+ A + M
Sbjct: 192 VLALSICTREAYQSM 206
>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
Length = 260
Score = 55.8 bits (133), Expect = 4e-08
Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 14/216 (6%)
Frame = +2
Query: 281 PMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVC 460
P++ +V +VT ++ GIG IA +L + GA V ++ R + + T Q G VC
Sbjct: 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVC 70
Query: 461 DSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVG 640
+ + + L +A G +D+LV+NA V N ++ VWD + +V
Sbjct: 71 HVGKAEDRERLVA-MAVNLHGGVDILVSNA--AVNPFFGN----IIDATEEVWDKILHVN 123
Query: 641 LRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSV-----PYGVGKAACDRLAADCA 805
++ +V + +VP + PY V K A L + A
Sbjct: 124 VKA----TVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLA 179
Query: 806 QELRRHGVSYVSLWPGLVQT---------ETLKEYM 886
EL + L PGL++T + KEYM
Sbjct: 180 VELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYM 215
>ref|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Sus scrofa].
Length = 292
Score = 54.3 bits (129), Expect = 1e-07
Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 8/204 (3%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
++G+ +VTGAS+GIGR +A L GA V +T R +TL+ + G V
Sbjct: 32 LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSAHYVAG 91
Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN---- 631
+ ++ F A + G LD+L I+N+ +AF SV+DD++
Sbjct: 92 TMEDMTFAEQFVAKAGKLLGGLDML----------ILNHITQAFM---TSVYDDIHLVRR 138
Query: 632 --NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCA 805
V + + SV A ++ + PY K A D +
Sbjct: 139 SMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIT 198
Query: 806 QE--LRRHGVSYVSLWPGLVQTET 871
+E + + VS GL+ T+T
Sbjct: 199 KEYSVTKVNVSITLCILGLIDTDT 222
>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
Length = 237
Score = 51.6 bits (122), Expect = 8e-07
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = +2
Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQ 472
+VC V G SRGIGR +A + + G + I R+L + A + GG + + CD ++
Sbjct: 3 RVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDL---GGDHLALSCDVAK 59
Query: 473 ESEVQSLFQQVAREQQGRLDVLVNNA 550
E +VQS F+++ + G ++ LVN A
Sbjct: 60 EQDVQSTFEEI-EKNLGPVNFLVNAA 84
>ref|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus scrofa].
Length = 737
Score = 50.1 bits (118), Expect = 2e-06
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYI---------TGRHLDTLQVTAQEAQSRGGR 442
G+V +VTGA G+GR AL E GA+V + G+ +E + +GG+
Sbjct: 9 GRVVLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGK 68
Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
V + E + A + GR+DV+VNN AG+ R ++F WD
Sbjct: 69 AVA----NYDSVEAGEKIVKAALDAFGRIDVVVNN--AGIL-----RDRSFSRISDEDWD 117
Query: 623 DVNNVGLRGHYL 658
+ V LRG ++
Sbjct: 118 MIQRVHLRGSFM 129
>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
Length = 309
Score = 49.3 bits (116), Expect = 4e-06
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +2
Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG-GRCVPVVCDS 466
G++ ++TGA G+GR +AL+ G+ + + + + + T + Q G CD
Sbjct: 40 GEIVLITGAGSGLGRLLALKFARLGSVLVLWDINQERNEETRKMVQEAGVAGAYAYTCDC 99
Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
SQ +V + QV +E G + +L+NNA I+ RK F + P + + +V +
Sbjct: 100 SQREDVYRVASQVKKE-VGDVSILINNA-----GIVTGRK--FLDCPDELMEKSLDVNFK 151
Query: 647 GH 652
H
Sbjct: 152 AH 153
>ref|NP_001177177.1| 15-hydroxyprostaglandin dehydrogenase [Sus scrofa].
Length = 266
Score = 49.3 bits (116), Expect = 4e-06
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +2
Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLD--TLQVTAQEAQSRGGRCVPVV 457
+ G+V +VTGA++GIGR A L GA V + + + A + Q + + +
Sbjct: 3 VNGKVALVTGAAQGIGRASAEALLLKGAKVALVDWNFEAGVKCKAALDEQFEPQKTLFIQ 62
Query: 458 CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASV 616
CD + +++++ F++V + GRLD+LVNNA +NN K WE +
Sbjct: 63 CDVADQAQLRDTFRKVV-DHFGRLDILVNNAG------VNNEKN--WEKTLQI 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,834,571
Number of extensions: 1125543
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4267
Number of HSP's successfully gapped: 11
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000967
(1159 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 462 e-127
>Sscrofa_Chr07
|| Length = 134764511
Score = 462 bits (233), Expect = e-127
Identities = 247/249 (99%), Gaps = 2/249 (0%)
Strand = Plus / Plus
Query: 1 cccttccggggtgggcgtggctgggccacgggatcgccccgcccctgtttgtggggtccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263074 cccttccggggtgggcgtggctgggccacgggatcgccccgcccctgtttgtggggtccc 80263133
Query: 61 ctcgcacatctgaagtcgtgcttccctccgcgtccacggcggaaacccggccagagcgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263134 ctcgcacatctgaagtcgtgcttccctccgcgtccacggcggaaacccggccagagcgcg 80263193
Query: 121 gacttccaccccagcgtcgtattctgacccggttgacgtcgccttgt-cccgcccctg-a 178
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 80263194 gacttccaccccagcgtcgtattctgacccggttgacgtcgccttgtccccgcccctgaa 80263253
Query: 179 aaacggaattaaagtcctccgagaacgagcgagacggtgtgacgagtccagaggcagcac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263254 aaacggaattaaagtcctccgagaacgagcgagacggtgtgacgagtccagaggcagcac 80263313
Query: 239 aggtggcag 247
|||||||||
Sbjct: 80263314 aggtggcag 80263322
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 245 cagatttaaccccttctcttgtgagtcatggtagcacccatgcagggccaagtgtgcgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263709 cagatttaaccccttctcttgtgagtcatggtagcacccatgcagggccaagtgtgcgtg 80263768
Query: 305 gtgacaggtgcttccaggggtattggccgtggcatcgctttacagctctgcgaagcaggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263769 gtgacaggtgcttccaggggtattggccgtggcatcgctttacagctctgcgaagcaggt 80263828
Query: 365 gccacagtttacatcactggccgccatcttgacacgctgcaggtcactgcccaggagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263829 gccacagtttacatcactggccgccatcttgacacgctgcaggtcactgcccaggagg 80263886
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 778 gtgcgacaggctggctgccgactgtgcccaggagctgcggcgccacggggtcagctacgt 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80271374 gtgcgacaggctggctgccgactgtgcccaggagctgcggcgccacggggtcagctacgt 80271433
Query: 838 gtctctgtggccagggttggtgcagacagaaacgctgaaggagtacatgataaaggctga 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80271434 gtctctgtggccagggttggtgcagacagaaacgctgaaggagtacatgataaaggctga 80271493
Query: 898 cactgctgatgaccacatgattgagcag 925
||||||||||||||||||||||||||||
Sbjct: 80271494 cactgctgatgaccacatgattgagcag 80271521
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 420 aggcgcaatcccgagggggccggtgtgtgcctgtggtgtgtgattcaagccaggagagtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80266700 aggcgcaatcccgagggggccggtgtgtgcctgtggtgtgtgattcaagccaggagagtg 80266759
Query: 480 aagtgcaaagcctatttcagcaggtggctcgagaacagcaggggcgtctagatgtgctgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80266760 aagtgcaaagcctatttcagcaggtggctcgagaacagcaggggcgtctagatgtgctgg 80266819
Query: 540 tcaacaatgcctatgctggtgtccagg 566
|||||||||||||||||||||||||||
Sbjct: 80266820 tcaacaatgcctatgctggtgtccagg 80266846
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 644 agaggccactacttgtgctcggtgtatgcagcacggctgatggtaccagctggccggggg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80270928 agaggccactacttgtgctcggtgtatgcagcacggctgatggtaccagctggccggggg 80270987
Query: 704 ctcattgtgatcatctcctccattggggggctgcagtatctcttcagtgtcccctatggt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80270988 ctcattgtgatcatctcctccattggggggctgcagtatctcttcagtgtcccctatggt 80271047
Query: 764 gtgggcaaagctgcg 778
|||||||||||||||
Sbjct: 80271048 gtgggcaaagctgcg 80271062
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 992 acagaccccaatatcctgagcctgagcgggaaggtgctgccatcctgtgacctggcgcgg 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80272484 acagaccccaatatcctgagcctgagcgggaaggtgctgccatcctgtgacctggcgcgg 80272543
Query: 1052 cgctatggcctacgggacgtggatgg 1077
||||||||||||||||||||||||||
Sbjct: 80272544 cgctatggcctacgggacgtggatgg 80272569
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 561 tccaggcgatcataaacaataggaagaaggcattctgggaaagccctgcctccgtttggg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80266994 tccaggcgatcataaacaataggaagaaggcattctgggaaagccctgcctccgtttggg 80267053
Query: 621 atgatgtcaacaacgtgggactcag 645
|||||||||||||||||||||||||
Sbjct: 80267054 atgatgtcaacaacgtgggactcag 80267078
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1076 ggccgccccgtccaggactacttgtctgtgagctctgttctctcccacatccccagcctg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80272708 ggccgccccgtccaggactacttgtctgtgagctctgttctctcccacatccccagcctg 80272767
Query: 1136 agctggatggcctc 1149
||||||||||||||
Sbjct: 80272768 agctggatggcctc 80272781
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 923 cagatcaaattgccattctcatccgcggagaccacagaaatgagtggcaaatgtgtggtg 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80272077 cagatcaaattgccattctcatccgcggagaccacagaaatgagtggcaaatgtgtggtg 80272136
Query: 983 gcactggcaacag 995
|||||||||||||
Sbjct: 80272137 gcactggcaacag 80272149
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,143,345
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 9
Length of query: 1159
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1138
Effective length of database: 2,808,413,156
Effective search space: 3195974171528
Effective search space used: 3195974171528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)