Animal-Genome cDNA 20110601C-000967


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000967
         (1159 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039759.1| dehydrogenase/reductase SDR family member 1 ...   488   e-138
Alignment   gi|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 ...    67   4e-11
Alignment   gi|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bo...    63   4e-10
Alignment   gi|NP_001030260.1| dehydrogenase/reductase SDR family member 11...    62   1e-09
Alignment   gi|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taur...    56   7e-08
Alignment   gi|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos ta...    55   2e-07
Alignment   gi|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [B...    54   3e-07
Alignment   gi|NP_001077186.1| carbonyl reductase family member 4 [Bos taur...    54   3e-07
Alignment   gi|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bo...    52   8e-07
Alignment   gi|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos tauru...    51   2e-06

>ref|NP_001039759.1| dehydrogenase/reductase SDR family member 1 [Bos taurus].
          Length = 312

 Score =  488 bits (1257), Expect = e-138
 Identities = 241/296 (81%), Positives = 263/296 (88%)
 Frame = +2

Query: 272  MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
            M A M+GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTLQ TAQEAQSRGGRCVP
Sbjct: 1    MPATMKGQVCVVTGASRGIGRGIALQLCQAGATVYITGRHLDTLQATAQEAQSRGGRCVP 60

Query: 452  VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
            VVCDSSQESEV++LF+QV REQQGRLDVLVNNAYAGVQ I+NN KK+FWESPAS+WDD+N
Sbjct: 61   VVCDSSQESEVRNLFEQVDREQQGRLDVLVNNAYAGVQPILNNSKKSFWESPASIWDDIN 120

Query: 632  NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
            NVGLRGHYLCSVY ARLMVPA               YLF+VPYGVGKAACDR+AADCAQE
Sbjct: 121  NVGLRGHYLCSVYGARLMVPAGRGLIVIISSTGGLHYLFNVPYGVGKAACDRMAADCAQE 180

Query: 812  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
            LRRHGVSYVSLWPGLVQTE LKE+M+K + A D +I+Q K  FSSAETTEMSGKCVVALA
Sbjct: 181  LRRHGVSYVSLWPGLVQTELLKEHMMK-ENASDPLIKQFKFRFSSAETTEMSGKCVVALA 239

Query: 992  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
            TDPNILSLSGKVLPSCDLARRYGL+DVDGRPVQDYLS+SS LSH+ +L W+AS+LP
Sbjct: 240  TDPNILSLSGKVLPSCDLARRYGLQDVDGRPVQDYLSLSSALSHVSNLGWLASYLP 295


>ref|NP_001098433.1| hydroxysteroid dehydrogenase-like protein 2 [Bos taurus].
          Length = 418

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLD-------TLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA + I  +          T+   A+E ++ GG+
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQAHPKLPGTIYTAAEEIKAAGGK 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P + D   E ++ S  ++ A E+ G +D+LVNNA A   ++ N       E+P    D
Sbjct: 68  ALPCIVDVRDEEQISSAVEK-AVEKFGGIDILVNNASA--ISLTNT-----LETPTKKVD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133


>ref|NP_001068891.1| 2,4-dienoyl-CoA reductase, mitochondrial [Bos taurus].
          Length = 329

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 3/240 (1%)
 Frame = +2

Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 463
           QG+V  +TG   G+G+G+   L   GA   I  R +D L+VTA++  S+ G  V  + CD
Sbjct: 52  QGKVAFITGGGTGLGKGMTTCLSSLGAQCVIASRKIDVLKVTAEQISSQTGNKVHAIQCD 111

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
                 VQ+   +  +   G  D+++NNA AG     + R      SP + W  + ++ L
Sbjct: 112 VRDPDMVQNAVSETIK-VIGHPDIVINNA-AGNFISPSERL-----SP-NAWKTITDIVL 163

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLAADCAQELR 817
            G    ++   + ++ A              +    F VP    KA  + L    A E  
Sbjct: 164 NGTAFVTLAIGKELIKAQKGASFLAITTIYAETGSGFVVPSASAKAGVEALNKSLAAEWG 223

Query: 818 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 997
           ++G+ +  + PG ++T+     +      +  MI++I  P     T E        L +D
Sbjct: 224 KYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRI--PCGRLGTVEELANLAAFLCSD 281


>ref|NP_001030260.1| dehydrogenase/reductase SDR family member 11 precursor [Bos
           taurus].
          Length = 255

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 9/201 (4%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
           ++ +VTGAS GIG  +A  L + G  V    R +  ++  A E +S G  G  +P  CD 
Sbjct: 7   RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 66

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S E ++ S+F  V R Q   +D+ +NNA          R         S W ++ NV + 
Sbjct: 67  SNEEDILSMFSAV-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKEMFNVNVL 118

Query: 647 GHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVP-----YGVGKAACDRLAADCAQE 811
              +C+  A + M                  +    P     Y   K A   L     QE
Sbjct: 119 ALSICTREACQSMRERKVDDGHIININSMCGHRVPPPAETHFYSATKYAVTALTEGLRQE 178

Query: 812 LR--RHGVSYVSLWPGLVQTE 868
           LR  R  +    + PG+V+T+
Sbjct: 179 LREARSHIRATCISPGVVETQ 199


>ref|NP_776605.2| short-chain dehydrogenase/reductase 3 [Bos taurus].
          Length = 302

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
 Frame = +2

Query: 257 LLL*VMVAPMQGQVCVVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSR 433
           L+L   +  +  +  ++TG  RGIGR +AL+  E GA  + + GR    L+ T +E +  
Sbjct: 27  LVLPAKLRDLSRENVLITGGGRGIGRQLALEFAERGARKIVLWGRTEKCLKETTEEIRQM 86

Query: 434 GGRCVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNA 550
           G  C   +CD     EV    + V RE+ G + +LVNNA
Sbjct: 87  GTECHYFICDVGNREEVYQTAKAV-REKVGDITILVNNA 124


>ref|NP_777126.1| 17-beta-hydroxysteroid dehydrogenase 14 [Bos taurus].
          Length = 270

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 2/208 (0%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSS 469
           G+V +VTG  RGIG GI     E+GA V I  +  D  +  A E +  G   V ++CD +
Sbjct: 9   GKVVIVTGGGRGIGAGIVRAFVESGAQVVICDK--DEARGRAVERELPG--TVFLLCDVT 64

Query: 470 QESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFW--ESPASVWDDVNNVGL 643
           +E +V++L  +  R + GRLD +VNNA               W  E+ A  +  +  + L
Sbjct: 65  REEDVRTLVSETIR-RFGRLDCIVNNA--------GYHPPPQWPEETSAQGFRQLLELNL 115

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQELRRH 823
            G Y  +  A   +  +                  +VPY   K A   +    A +  ++
Sbjct: 116 LGTYTLTKLALPHLRKSRGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQY 175

Query: 824 GVSYVSLWPGLVQTETLKEYMIKADTAD 907
           GV    + PG + T   +E  + A T D
Sbjct: 176 GVRVNCISPGNIWTPLWEE--LAASTPD 201


>ref|NP_001007810.1| peroxisomal multifunctional enzyme type 2 [Bos taurus].
          Length = 736

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYI---------TGRHLDTLQVTAQEAQSRGGR 442
           G+V +VTGA  G+GR  AL   E GA+V +          G+   +     +E + +GG+
Sbjct: 9   GRVVLVTGAGGGLGRAYALAFAERGASVVVNDLRGDFTGVGKGSLSADKVVEEIRRKGGK 68

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            V    DS +E E      + A +  GR+D+++NN  AG+      R ++F       WD
Sbjct: 69  AV-ANYDSVEEGE---KIVKTALDAFGRIDIVINN--AGIL-----RDRSFSRISDEDWD 117

Query: 623 DVNNVGLRGHYL 658
            +  V LRG +L
Sbjct: 118 KIQRVHLRGSFL 129


>ref|NP_001077186.1| carbonyl reductase family member 4 [Bos taurus].
          Length = 237

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 30/86 (34%), Positives = 51/86 (59%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQ 472
           +VC V G SRGIGR +A  + + G  + I  R+L+  +  A +    GG  + + CD ++
Sbjct: 3   KVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLEGARAAAGDL---GGDHLALSCDVAK 59

Query: 473 ESEVQSLFQQVAREQQGRLDVLVNNA 550
           E +VQ+ F+++  +  GR++ LVN A
Sbjct: 60  EHDVQNTFEEI-EKNLGRVNFLVNAA 84


>ref|NP_777247.1| dehydrogenase/reductase SDR family member 4 [Bos taurus].
          Length = 260

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 1/196 (0%)
 Frame = +2

Query: 281 PMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVC 460
           P+  +V +VT ++ GIG  IA +L + GA V ++ R    +       +  G      VC
Sbjct: 11  PLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVC 70

Query: 461 DSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVG 640
              +  + + L    A +  G +D+L++NA       ++    +  + P  VWD + +V 
Sbjct: 71  HVGKAEDRERLVA-TAVKLHGGVDILISNA------AVSPFFGSLMDVPEEVWDKILDVN 123

Query: 641 LRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSV-PYGVGKAACDRLAADCAQELR 817
           ++   L +      M                     S+ PY V K A   L  + A EL 
Sbjct: 124 VKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELA 183

Query: 818 RHGVSYVSLWPGLVQT 865
              V    L PGL++T
Sbjct: 184 ESNVRVNCLAPGLIRT 199


>ref|NP_001192862.1| epidermal retinol dehydrogenase 2 [Bos taurus].
          Length = 309

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 1/180 (0%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGG-RCVPVVCDS 466
           G++ ++TGA  G+GR +AL+  + G+ + +     ++ + T + A   G  R     CD 
Sbjct: 40  GEIVLITGAGSGLGRLLALKFAQLGSVLVLWDISQESNEETCKMAVEAGATRVYAYTCDC 99

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S++ E+  +  QV +E  G   +L+NNA      I+  RK  F + P  + +   +V  +
Sbjct: 100 SRKEEIYRVANQVKKE-VGDASILINNA-----GIVTGRK--FMDCPDELIEKSLDVNFK 151

Query: 647 GHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQELRRHG 826
            H    ++  +  +PA               +L  +    G    + LA  CA +   +G
Sbjct: 152 SH----IWTYKAFLPAMIANNRG--------HLVCISSSAGLIGMNGLADYCASKFAAYG 199


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,939,099
Number of extensions: 1745996
Number of successful extensions: 6527
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6472
Number of HSP's successfully gapped: 13
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000967
         (1159 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537393.2| PREDICTED: similar to dehydrogenase/reductase (...   430   e-120
Alignment   gi|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 ...    62   8e-10
Alignment   gi|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase...    62   8e-10
Alignment   gi|XP_853611.1| PREDICTED: similar to hydroxysteroid dehydrogen...    62   8e-10
Alignment   gi|XP_532035.2| PREDICTED: similar to hydroxysteroid dehydrogen...    62   8e-10
Alignment   gi|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Can...    59   1e-08
Alignment   gi|XP_867482.1| PREDICTED: similar to short-chain dehydrogenase...    59   1e-08
Alignment   gi|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase...    59   1e-08
Alignment   gi|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl...    57   3e-08
Alignment   gi|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl...    57   4e-08

>ref|XP_537393.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 1
            [Canis familiaris].
          Length = 296

 Score =  430 bits (1105), Expect = e-120
 Identities = 215/296 (72%), Positives = 241/296 (81%)
 Frame = +2

Query: 272  MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
            M A M+G+VCVVTGASRGIGRGIALQLC+AGATVYITGRH+DTLQ TA+E          
Sbjct: 1    MAASMKGKVCVVTGASRGIGRGIALQLCQAGATVYITGRHMDTLQATAEE---------- 50

Query: 452  VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
                   ESEVQ LF+QV +EQQGRLDVLVNNAYAGV AI+ N  KAFWESPAS+WDD+N
Sbjct: 51   -------ESEVQRLFEQVDQEQQGRLDVLVNNAYAGVPAIMKNINKAFWESPASIWDDIN 103

Query: 632  NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
            NVGLRGHYLCSVY ARLMVPA              QY F+V YGVGKAACDRLAADCAQE
Sbjct: 104  NVGLRGHYLCSVYGARLMVPAGQGLIVVISSIGGLQYFFNVSYGVGKAACDRLAADCAQE 163

Query: 812  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
            LRRHGVSYVSLWPG+VQTE +KE ++K +  DD +++Q++  FSSAETTEMSGKCVVALA
Sbjct: 164  LRRHGVSYVSLWPGMVQTELVKEVVVKNENTDDPLLKQLRSNFSSAETTEMSGKCVVALA 223

Query: 992  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
            TDPNILSLSGKVLPSCDLARRY L+DVDGRP+QDYLS+SSVLSH  SL W+AS+LP
Sbjct: 224  TDPNILSLSGKVLPSCDLARRYSLQDVDGRPIQDYLSLSSVLSHASSLGWLASYLP 279


>ref|NP_001186059.1| hydroxysteroid dehydrogenase-like protein 2 [Canis lupus
           familiaris].
          Length = 418

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHL-------DTLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA + I  +          T+   A+E ++ GG+
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEEIEAAGGK 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P   D   E ++ +  ++ A E+ G +D+LVNNA A   ++ N       E+P    D
Sbjct: 68  ALPCSVDVRDEQQISNAVEK-AVERFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133


>ref|XP_535127.2| PREDICTED: similar to 2,4-dienoyl-CoA reductase, mitochondrial
           precursor (2,4-dienoyl-CoA reductase [NADPH])
           (4-enoyl-CoA reductase [NADPH]) [Canis familiaris].
          Length = 370

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 60/258 (23%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
 Frame = +2

Query: 254 PLLL*VMVAP--MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ 427
           P L   M+ P   QG+V  +TG   G+G+G+   L   GA   I  R++D L+ TA++  
Sbjct: 80  PPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTALLSSLGAQCVIASRNIDVLKDTAEQIS 139

Query: 428 SRGGRCVPVV-CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWES 604
           S+ G  V  + CD      VQ    ++ +              AG  AI+ N     + S
Sbjct: 140 SQTGNKVHAIQCDIRNPEMVQKTVSELIK-------------VAGHPAIVINNAAGNFIS 186

Query: 605 P-----ASVWDDVNNVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYG 763
           P     A+ W  + ++ L G    ++   + ++ A              +    F VP  
Sbjct: 187 PTERLSANAWKTITDIVLNGTAYVTLEIGKQLIKAQKGAAFLAITTIFAESGSGFVVPSA 246

Query: 764 VGKAACDRLAADCAQELRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFS 943
             KA  + +    A E  ++G+ +  + PG ++T+     +    T +  MI++I  P  
Sbjct: 247 SAKAGVEAMNKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKDMIDRI--PCG 304

Query: 944 SAETTEMSGKCVVALATD 997
              T E        L +D
Sbjct: 305 RLGTVEELANLAAFLCSD 322


>ref|XP_853611.1| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 2
           [Canis familiaris].
          Length = 418

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHL-------DTLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA + I  +          T+   A+E ++ GG+
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEEIEAAGGK 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P   D   E ++ +  ++ A E+ G +D+LVNNA A   ++ N       E+P    D
Sbjct: 68  ALPCSVDVRDEQQISNAVEK-AVERFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133


>ref|XP_532035.2| PREDICTED: similar to hydroxysteroid dehydrogenase like 2 isoform 1
           [Canis familiaris].
          Length = 417

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHL-------DTLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA + I  +          T+   A+E ++ GG+
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTHAHPKLPGTIFTAAEEIEAAGGK 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P   D   E ++ +  ++ A E+ G +D+LVNNA A   ++ N       E+P    D
Sbjct: 68  ALPCSVDVRDEQQISNAVEK-AVERFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133


>ref|NP_001041446.1| 17-beta-hydroxysteroid dehydrogenase 14 [Canis lupus familiaris].
          Length = 270

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 2/194 (1%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSS 469
           G+V VVTG  RGIG GIA    + GA V I  +     +   QE        V ++CD +
Sbjct: 9   GKVVVVTGGGRGIGAGIARAFVQNGAQVVICDKDESGGRALEQELTG----TVFILCDVT 64

Query: 470 QESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFW--ESPASVWDDVNNVGL 643
           +E +VQ+L  +  R + GRLD +VNNA               W  E+ A  +  +  + L
Sbjct: 65  REKDVQTLISETVR-RFGRLDCVVNNA--------GYHPPPQWPEETSAEGFRQLLELNL 115

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQELRRH 823
            G Y  + +A   +  +                + +VPY   K A   +    A +  R+
Sbjct: 116 LGTYTVTKFALPHLRKSQGNIINISSLVGAIGQVQAVPYVATKGAVTAMTKALALDESRY 175

Query: 824 GVSYVSLWPGLVQT 865
           GV    + PG + T
Sbjct: 176 GVRVNCISPGNIWT 189


>ref|XP_867482.1| PREDICTED: similar to short-chain dehydrogenase/reductase isoform 2
           [Canis familiaris].
          Length = 214

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
           ++ +VTGAS GIG  +A  L + G  V    R +  ++  A E +S G  G  +P  CD 
Sbjct: 26  RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPHRCDL 85

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S E ++ S+F  V R Q   +D+ +NNA          R         S W D+ NV + 
Sbjct: 86  SSEEDILSMFSAV-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKDMFNVNVL 137

Query: 647 GHYLCSVYAARLM 685
              +C+  A + M
Sbjct: 138 ALSICTREAYQSM 150


>ref|XP_548249.1| PREDICTED: similar to short-chain dehydrogenase/reductase isoform 1
           [Canis familiaris].
          Length = 274

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
           ++ +VTGAS GIG  +A  L + G  V    R +  ++  A E +S G  G  +P  CD 
Sbjct: 26  RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPHRCDL 85

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S E ++ S+F  V R Q   +D+ +NNA          R         S W D+ NV + 
Sbjct: 86  SSEEDILSMFSAV-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKDMFNVNVL 137

Query: 647 GHYLCSVYAARLM 685
              +C+  A + M
Sbjct: 138 ALSICTREAYQSM 150


>ref|XP_532316.2| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
           [Canis familiaris].
          Length = 303

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ-----SRGGRCVPVV 457
           Q+ +VTG + GIG+ IA +L   G  V I  R+ D L+ TA+E +     +   +  P+ 
Sbjct: 19  QLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASLPPTNQAQVTPIK 78

Query: 458 CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNV 637
           C+  +E EV +L +    E  G+++ LVNN   G Q +      A     A  W  V  +
Sbjct: 79  CNIRKEEEVNNLVRSTL-EIYGKINFLVNN--GGGQFV-----AAMEHINAKGWHAVIEI 130

Query: 638 GLRG-HYLC-SVYAARLMVP 691
            L G  Y+C +VY + +  P
Sbjct: 131 NLTGTFYMCKAVYNSWMKEP 150


>ref|XP_851139.1| PREDICTED: similar to peroxisomal trans-2-enoyl-CoA reductase
           isoform 2 [Canis familiaris].
          Length = 303

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ-----SRGGRCVPVV 457
           Q+ +VTG + GIG+ IA +L   G  V I  R+ D L+ TA+E +     +   +  P+ 
Sbjct: 19  QLAIVTGGATGIGKAIATELLHLGCNVVIASRNFDRLKSTAEELRASLPPTNKAQVTPIK 78

Query: 458 CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWES 604
           C+  +E EV +L +    E  G+++ LVNN      A + +     W +
Sbjct: 79  CNIRKEEEVNNLVRSTL-EIYGKINFLVNNGGGQFMAAMEHINAKGWHA 126


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,111,606
Number of extensions: 1791246
Number of successful extensions: 6529
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6479
Number of HSP's successfully gapped: 21
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000967
         (1159 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001129522.1| dehydrogenase/reductase SDR family member 1 ...   479   e-135
Alignment   gi|NP_612461.1| dehydrogenase/reductase SDR family member 1 [Ho...   479   e-135
Alignment   gi|NP_115679.2| hydroxysteroid dehydrogenase-like protein 2 iso...    64   2e-10
Alignment   gi|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo s...    63   6e-10
Alignment   gi|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precur...    62   8e-10
Alignment   gi|NP_077284.2| dehydrogenase/reductase SDR family member 11 pr...    59   9e-09
Alignment   gi|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme...    55   2e-07
Alignment   gi|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ...    55   2e-07
Alignment   gi|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ...    55   2e-07
Alignment   gi|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sap...    54   4e-07

>ref|NP_001129522.1| dehydrogenase/reductase SDR family member 1 [Homo sapiens].
          Length = 313

 Score =  479 bits (1232), Expect = e-135
 Identities = 234/296 (79%), Positives = 257/296 (86%)
 Frame = +2

Query: 272  MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
            M APM GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTL+V AQEAQS GG+CVP
Sbjct: 1    MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVP 60

Query: 452  VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
            VVCDSSQESEV+SLF+QV REQQGRLDVLVNNAYAGVQ I+N R KAFWE+PAS+WDD+N
Sbjct: 61   VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDIN 120

Query: 632  NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
            NVGLRGHY CSVY ARLMVPA              QY+F+VPYGVGKAACD+LAADCA E
Sbjct: 121  NVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVPYGVGKAACDKLAADCAHE 180

Query: 812  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
            LRRHGVS VSLWPG+VQTE LKE+M K +   D +++Q K  FSSAETTE+SGKCVVALA
Sbjct: 181  LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA 240

Query: 992  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
            TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLS+SSVLSH+  L W+AS+LP
Sbjct: 241  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSLSSVLSHVSGLGWLASYLP 296


>ref|NP_612461.1| dehydrogenase/reductase SDR family member 1 [Homo sapiens].
          Length = 313

 Score =  479 bits (1232), Expect = e-135
 Identities = 234/296 (79%), Positives = 257/296 (86%)
 Frame = +2

Query: 272  MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
            M APM GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTL+V AQEAQS GG+CVP
Sbjct: 1    MAAPMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVP 60

Query: 452  VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
            VVCDSSQESEV+SLF+QV REQQGRLDVLVNNAYAGVQ I+N R KAFWE+PAS+WDD+N
Sbjct: 61   VVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDIN 120

Query: 632  NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
            NVGLRGHY CSVY ARLMVPA              QY+F+VPYGVGKAACD+LAADCA E
Sbjct: 121  NVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNVPYGVGKAACDKLAADCAHE 180

Query: 812  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
            LRRHGVS VSLWPG+VQTE LKE+M K +   D +++Q K  FSSAETTE+SGKCVVALA
Sbjct: 181  LRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALA 240

Query: 992  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
            TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLS+SSVLSH+  L W+AS+LP
Sbjct: 241  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSLSSVLSHVSGLGWLASYLP 296


>ref|NP_115679.2| hydroxysteroid dehydrogenase-like protein 2 isoform 1 [Homo
           sapiens].
          Length = 418

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRH-------LDTLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA + I  +        L T+   A+E ++ GG+
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGK 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P + D   E ++ +  ++ A ++ G +D+LVNNA A   ++ N       ++P    D
Sbjct: 68  ALPCIVDVRDEQQISAAVEK-AIKKFGGIDILVNNASA--ISLTNT-----LDTPTKRLD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLAS 133


>ref|NP_060911.2| peroxisomal trans-2-enoyl-CoA reductase [Homo sapiens].
          Length = 303

 Score = 62.8 bits (151), Expect = 6e-10
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 12/211 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQ-----SRGGRCV 448
           +QGQV +VTG + GIG+ I  +L E G+ V I  R L+ L+  A E Q     ++  R +
Sbjct: 16  LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75

Query: 449 PVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPA-----S 613
           P+ C+   E EV +L +    +  G+++ LVNN   G Q +          SPA      
Sbjct: 76  PIQCNIRNEEEVNNLVKSTL-DTFGKINFLVNN--GGGQFL----------SPAEHISSK 122

Query: 614 VWDDVNNVGLRG-HYLC-SVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDR 787
            W  V    L G  Y+C +VY++   +                 +  +V  G  +A    
Sbjct: 123 GWHAVLETNLTGTFYMCKAVYSS--WMKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYN 180

Query: 788 LAADCAQELRRHGVSYVSLWPGLVQTETLKE 880
           L    A E    G+    + PG++ ++T  E
Sbjct: 181 LTKSLALEWACSGIRINCVAPGVIYSQTAVE 211


>ref|NP_001350.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Homo sapiens].
          Length = 335

 Score = 62.4 bits (150), Expect = 8e-10
 Identities = 55/240 (22%), Positives = 102/240 (42%), Gaps = 3/240 (1%)
 Frame = +2

Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 463
           QG+V  +TG   G+G+G+   L   GA   I  R +D L+ TA++  S+ G  V  + CD
Sbjct: 58  QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCD 117

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
                 VQ+   ++ +   G  ++++NNA       I+  ++    SP + W  + ++ L
Sbjct: 118 VRDPDMVQNTVSELIK-VAGHPNIVINNAAGN---FISPTERL---SP-NAWKTITDIVL 169

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLAADCAQELR 817
            G    ++   + ++ A              +    F VP    KA  + ++   A E  
Sbjct: 170 NGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG 229

Query: 818 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 997
           ++G+ +  + PG ++T+     +    T +  MI +I  P     T E        L +D
Sbjct: 230 KYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI--PCGRLGTVEELANLAAFLCSD 287


>ref|NP_077284.2| dehydrogenase/reductase SDR family member 11 precursor [Homo
           sapiens].
          Length = 260

 Score = 58.9 bits (141), Expect = 9e-09
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
           ++ +VTGAS GIG  +A  L + G  V    R +  ++  A E +S G  G  +P  CD 
Sbjct: 12  RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 71

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S E ++ S+F  + R Q   +D+ +NNA          R         S W D+ NV + 
Sbjct: 72  SNEEDILSMFSAI-RSQHSGVDICINNAGLA-------RPDTLLSGSTSGWKDMFNVNVL 123

Query: 647 GHYLCSVYAARLM 685
              +C+  A + M
Sbjct: 124 ALSICTREAYQSM 136


>ref|NP_001193670.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
          Length = 292

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 2/198 (1%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
           +QG+  +VTGAS+GIGR +A  L + GA V +T R  +TLQ         G      +  
Sbjct: 32  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 91

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
           + ++      F   A +  G LD+L+ N       I N     F +    V   +  V  
Sbjct: 92  TMEDMTFAEQFVAQAGKLMGGLDMLILN------HITNTSLNLFHDDIHHVRKSM-EVNF 144

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE--LR 817
             + + +V A  ++  +               Y     Y   K A D   +   +E  + 
Sbjct: 145 LSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204

Query: 818 RHGVSYVSLWPGLVQTET 871
           R  VS      GL+ TET
Sbjct: 205 RVNVSITLCVLGLIDTET 222


>ref|NP_861420.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
          Length = 292

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 2/198 (1%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
           +QG+  +VTGAS+GIGR +A  L + GA V +T R  +TLQ         G      +  
Sbjct: 32  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 91

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
           + ++      F   A +  G LD+L+ N       I N     F +    V   +  V  
Sbjct: 92  TMEDMTFAEQFVAQAGKLMGGLDMLILN------HITNTSLNLFHDDIHHVRKSM-EVNF 144

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE--LR 817
             + + +V A  ++  +               Y     Y   K A D   +   +E  + 
Sbjct: 145 LSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204

Query: 818 RHGVSYVSLWPGLVQTET 871
           R  VS      GL+ TET
Sbjct: 205 RVNVSITLCVLGLIDTET 222


>ref|NP_005516.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Homo sapiens].
          Length = 292

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 2/198 (1%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
           +QG+  +VTGAS+GIGR +A  L + GA V +T R  +TLQ         G      +  
Sbjct: 32  LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 91

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
           + ++      F   A +  G LD+L+ N       I N     F +    V   +  V  
Sbjct: 92  TMEDMTFAEQFVAQAGKLMGGLDMLILN------HITNTSLNLFHDDIHHVRKSM-EVNF 144

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE--LR 817
             + + +V A  ++  +               Y     Y   K A D   +   +E  + 
Sbjct: 145 LSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVS 204

Query: 818 RHGVSYVSLWPGLVQTET 871
           R  VS      GL+ TET
Sbjct: 205 RVNVSITLCVLGLIDTET 222


>ref|NP_004744.2| short-chain dehydrogenase/reductase 3 [Homo sapiens].
          Length = 302

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = +2

Query: 257 LLL*VMVAPMQGQVCVVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSR 433
           L+L   +  +  +  ++TG  RGIGR +A +  E GA  + + GR    L+ T +E +  
Sbjct: 27  LVLPAKLRDLSRENVLITGGGRGIGRQLAREFAERGARKIVLWGRTEKCLKETTEEIRQM 86

Query: 434 GGRCVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNA 550
           G  C   +CD     EV    + V RE+ G + +LVNNA
Sbjct: 87  GTECHYFICDVGNREEVYQTAKAV-REKVGDITILVNNA 124


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,036,703
Number of extensions: 1749447
Number of successful extensions: 6580
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6532
Number of HSP's successfully gapped: 19
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000967
         (1159 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_081095.2| dehydrogenase/reductase SDR family member 1 [Mu...   469   e-132
Alignment   gi|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mu...    67   3e-11
Alignment   gi|NP_808232.2| dehydrogenase/reductase SDR family member 11 pr...    59   6e-09
Alignment   gi|NP_663570.2| carbonyl reductase family member 4 [Mus musculu...    58   2e-08
Alignment   gi|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precur...    55   8e-08
Alignment   gi|NP_001165895.1| short-chain dehydrogenase/reductase 3 isofor...    54   2e-07
Alignment   gi|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1...    54   2e-07
Alignment   gi|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus].     52   1e-06
Alignment   gi|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculu...    51   2e-06
Alignment   gi|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus ...    51   2e-06

>ref|NP_081095.2| dehydrogenase/reductase SDR family member 1 [Mus musculus].
          Length = 313

 Score =  469 bits (1206), Expect = e-132
 Identities = 228/296 (77%), Positives = 256/296 (86%)
 Frame = +2

Query: 272  MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
            MVAPM+GQVCVVTGASRGIGRGIALQLC+AGATVYITGRHLDTL+ TAQEAQS GGRCVP
Sbjct: 1    MVAPMKGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRATAQEAQSLGGRCVP 60

Query: 452  VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
            VVCDSSQESEV+SLF+QV REQ+GRLDVLVNNAYAGVQAI+N   K+FWE PAS+WDD+N
Sbjct: 61   VVCDSSQESEVKSLFEQVDREQKGRLDVLVNNAYAGVQAILNTTNKSFWEVPASIWDDIN 120

Query: 632  NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
            NVGLRGHYLCSVY ARLMVPA              Q++F+VPYGVGKAACDRLAADCA E
Sbjct: 121  NVGLRGHYLCSVYGARLMVPAGKGLIVIVSSPGGLQHMFNVPYGVGKAACDRLAADCAHE 180

Query: 812  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
            LRRHGVSYVSLWPGLVQTE +KE+M K DT +D + +++K  FSSAE+ EMSGKCVVALA
Sbjct: 181  LRRHGVSYVSLWPGLVQTEMVKEFMAKEDTPEDPLFKKMKPDFSSAESPEMSGKCVVALA 240

Query: 992  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
            TDPNIL+LSGKVLPSCDLARRYGL+D+DGRPV+DY S+   LS + SL W+ SFLP
Sbjct: 241  TDPNILNLSGKVLPSCDLARRYGLKDIDGRPVKDYFSLGYALSQVSSLGWLNSFLP 296


>ref|NP_077217.2| hydroxysteroid dehydrogenase-like protein 2 [Mus musculus].
          Length = 490

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYI----TGRH---LDTLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA + I    T +H   L T+   A+E ++ GG 
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTTQKHPKLLGTIYTAAEEIEAAGGT 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P V D   E ++ S  ++ A E+ G +D+LVNNA A   ++ N       ++P    D
Sbjct: 68  ALPCVVDVRDEQQINSAVEK-AVEKFGGIDILVNNASA--ISLTNT-----LDTPTKRVD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133


>ref|NP_808232.2| dehydrogenase/reductase SDR family member 11 precursor [Mus
           musculus].
          Length = 260

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVCDS 466
           ++ +VTGAS GIG  +A  L + G  V    R +  ++  A E +S G  G  +P  CD 
Sbjct: 12  RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDL 71

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S E ++ S+F  V R Q   +D+ +NNA          R         S W D+ NV + 
Sbjct: 72  SNEEDILSMFSAV-RSQHSGVDICINNAGMA-------RPDTLLSGSTSGWKDMFNVNVL 123

Query: 647 GHYLCSVYAARLM 685
              +C+  A + M
Sbjct: 124 ALSICTREAYQSM 136


>ref|NP_663570.2| carbonyl reductase family member 4 [Mus musculus].
          Length = 236

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 34/86 (39%), Positives = 51/86 (59%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQ 472
           +VC V G SRGIGR +A  + + G  + I  R+L+  +VTA E    GG  +   CD ++
Sbjct: 3   KVCAVFGGSRGIGRAVAQLMAQKGYRLAIVSRNLEVAKVTAGEL---GGNHLAFRCDVAK 59

Query: 473 ESEVQSLFQQVAREQQGRLDVLVNNA 550
           E +VQS FQ++  +  G ++ LVN A
Sbjct: 60  EQDVQSTFQEM-EKHLGPVNFLVNAA 84


>ref|NP_080448.1| 2,4-dienoyl-CoA reductase, mitochondrial precursor [Mus musculus].
          Length = 335

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 3/240 (1%)
 Frame = +2

Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVV-CD 463
           QG+V  +TG   G+G+ +   L   GA   I  R++D L+ TA+E  S+ G  V  + CD
Sbjct: 58  QGKVAFITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHAIRCD 117

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGL 643
                 V +   ++ +   G  DV++NNA         N          + W  + ++ L
Sbjct: 118 VRDPDMVHNTVLELIK-VAGHPDVVINNA-------AGNFISPSERLTPNGWKTITDIVL 169

Query: 644 RGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLAADCAQELR 817
            G    ++   + ++ A              +    F +P    K+  + +    A E  
Sbjct: 170 NGTAYVTLEIGKQLIKAQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWG 229

Query: 818 RHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALATD 997
           R+G+ +  + PG ++T+     +      +  MI++I  P     T E        L +D
Sbjct: 230 RYGMRFNIIQPGPIKTKGAFSRLDPTGRFEKEMIDRI--PCGRLGTMEELANLATFLCSD 287


>ref|NP_001165895.1| short-chain dehydrogenase/reductase 3 isoform 2 [Mus musculus].
          Length = 276

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +2

Query: 302 VVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQES 478
           ++TG  RGIGR +A +  E GA  + + GR    L+ T +E +  G  C   +CD     
Sbjct: 16  LITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNRE 75

Query: 479 EVQSLFQQVAREQQGRLDVLVNNA 550
           EV  + + V RE+ G + +LVNNA
Sbjct: 76  EVYQMAKAV-REKVGDITILVNNA 98


>ref|NP_035433.1| short-chain dehydrogenase/reductase 3 isoform 1 [Mus musculus].
          Length = 302

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +2

Query: 302 VVTGASRGIGRGIALQLCEAGA-TVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQES 478
           ++TG  RGIGR +A +  E GA  + + GR    L+ T +E +  G  C   +CD     
Sbjct: 42  LITGGGRGIGRHLAREFAERGARKIVLWGRTEKCLKETTEEIRQMGTECHYFICDVGNRE 101

Query: 479 EVQSLFQQVAREQQGRLDVLVNNA 550
           EV  + + V RE+ G + +LVNNA
Sbjct: 102 EVYQMAKAV-REKVGDITILVNNA 124


>ref|NP_871789.1| epidermal retinol dehydrogenase 2 [Mus musculus].
          Length = 309

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG-GRCVPVVCDS 466
           G++ ++TGA  G+GR +ALQ    GA + +   + +    T Q A+  G  R     CD 
Sbjct: 40  GEIVLITGAGSGLGRLLALQFARLGAVLVLWDVNKEANDETHQLAREAGAARVHAYTCDC 99

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           S+  EV  +  QV +E  G + +L+NNA      I+  R   F + P  + +   +V  +
Sbjct: 100 SRREEVYRVADQVKKE-VGDVSILINNA-----GIVTGRN--FLDCPDDLMEKSFDVNFK 151

Query: 647 GH 652
            H
Sbjct: 152 AH 153


>ref|NP_444492.1| estradiol 17-beta-dehydrogenase 11 [Mus musculus].
          Length = 298

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 49/87 (56%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSS 469
           G++ ++TGA  GIGR  A +  +    + +   + + ++ TA + +  G +  P V D S
Sbjct: 36  GEIVLITGAGHGIGRLTAYEFAKLNTKLVLWDINKNGIEETAAKCRKLGAQAHPFVVDCS 95

Query: 470 QESEVQSLFQQVAREQQGRLDVLVNNA 550
           Q  E+ S  ++V +E+ G + +LVNNA
Sbjct: 96  QREEIYSAAKKV-KEEVGDVSILVNNA 121


>ref|NP_032318.2| peroxisomal multifunctional enzyme type 2 [Mus musculus].
          Length = 735

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
 Frame = +2

Query: 272 MVAPMQ--GQVCVVTGASRGIGRGIALQLCEAGATVYIT---------GRHLDTLQVTAQ 418
           M +P++  G+V +VTGA  G+GR  AL   E GA V +          G+          
Sbjct: 1   MASPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVIVNDLGGDFKGIGKGSSAADKVVA 60

Query: 419 EAQSRGGRCVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFW 598
           E + +GG+ V     +    E      + A +  GR+DV+VNN  AG+      R ++F 
Sbjct: 61  EIRRKGGKAVA----NYDSVEAGEKLVKTALDTFGRIDVVVNN--AGIL-----RDRSFS 109

Query: 599 ESPASVWDDVNNVGLRGHY 655
                 WD ++ V LRG +
Sbjct: 110 RISDEDWDIIHRVHLRGSF 128


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,489,004
Number of extensions: 1453309
Number of successful extensions: 5517
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5475
Number of HSP's successfully gapped: 16
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000967
         (1159 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003128591.1| PREDICTED: dehydrogenase/reductase SDR famil...   560   e-160
Alignment   gi|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 ...    67   2e-11
Alignment   gi|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Su...    64   2e-10
Alignment   gi|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR famil...    62   6e-10
Alignment   gi|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Su...    56   4e-08
Alignment   gi|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 ...    54   1e-07
Alignment   gi|XP_001927120.1| PREDICTED: carbonyl reductase family member ...    52   8e-07
Alignment   gi|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus ...    50   2e-06
Alignment   gi|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrof...    49   4e-06
Alignment   gi|NP_001177177.1| 15-hydroxyprostaglandin dehydrogenase [Sus s...    49   4e-06

>ref|XP_003128591.1| PREDICTED: dehydrogenase/reductase SDR family member 1-like [Sus
            scrofa].
          Length = 313

 Score =  560 bits (1442), Expect = e-160
 Identities = 282/296 (95%), Positives = 282/296 (95%)
 Frame = +2

Query: 272  MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 451
            MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP
Sbjct: 1    MVAPMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVP 60

Query: 452  VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 631
            VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN
Sbjct: 61   VVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN 120

Query: 632  NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCAQE 811
            NVGLRGHYLCSVYAARLMVPA              QYLFSVPYGVGKAACDRLAADCAQE
Sbjct: 121  NVGLRGHYLCSVYAARLMVPAGRGLIVIISSIGGLQYLFSVPYGVGKAACDRLAADCAQE 180

Query: 812  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 991
            LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA
Sbjct: 181  LRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGKCVVALA 240

Query: 992  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 1159
            TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP
Sbjct: 241  TDPNILSLSGKVLPSCDLARRYGLRDVDGRPVQDYLSVSSVLSHIPSLSWMASFLP 296


>ref|NP_001183950.1| hydroxysteroid dehydrogenase-like protein 2 [Sus scrofa].
          Length = 418

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLD-------TLQVTAQEAQSRGGR 442
           + G    +TGASRGIG+ IAL+  + GA V I  +          T+   A+E Q+ GG+
Sbjct: 8   LAGCTVFITGASRGIGKAIALKAAKDGANVVIAAKTTQTHPKLQGTIYTAAEEIQAAGGK 67

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            +P V D   E ++    ++ A E+ G +D+LVNNA A   ++ N       E+P    D
Sbjct: 68  ALPCVVDVRDEQQISDAVEK-AVEKFGGIDILVNNASA--ISLTNT-----LETPTKRVD 119

Query: 623 DVNNVGLRGHYLCS 664
            + NV  RG YL S
Sbjct: 120 LMMNVNTRGTYLTS 133


>ref|NP_001177161.1| 2,4-dienoyl-CoA reductase, mitochondrial [Sus scrofa].
          Length = 328

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 60/248 (24%), Positives = 107/248 (43%), Gaps = 5/248 (2%)
 Frame = +2

Query: 269 VMVAP--MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGR 442
           VM+ P   QG++  +TG   GIG+ +   L   GA   I  R++D L+ TA+E  S+ G 
Sbjct: 43  VMLPPNTFQGKLAFITGGGTGIGKRMTTHLSSLGAQCVIASRNIDILKATAEEISSQTGN 102

Query: 443 CVPVV-CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVW 619
            V  + CD    + VQ+   ++ +   G  D+++NNA AG     + R      SP + W
Sbjct: 103 KVHAIQCDVRDPNMVQNTVSELIK-VIGHPDIVINNA-AGNFISPSERL-----SP-NAW 154

Query: 620 DDVNNVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQ--YLFSVPYGVGKAACDRLA 793
             + ++ L G    ++   + ++ A              +    F VP    KA  + ++
Sbjct: 155 KTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLAITTIYAETGSGFVVPSASAKAGVEAMS 214

Query: 794 ADCAQELRRHGVSYVSLWPGLVQTETLKEYMIKADTADDHMIEQIKLPFSSAETTEMSGK 973
              A E  ++G+ +  + PG ++T+     +      +  MI++I  P     T E    
Sbjct: 215 KSLAAEWSKYGMRFNVIQPGPIKTKGAFSRLDPTGAFEKEMIDRI--PCGRLGTVEELAN 272

Query: 974 CVVALATD 997
               L +D
Sbjct: 273 LATFLCSD 280


>ref|XP_003131752.1| PREDICTED: dehydrogenase/reductase SDR family member 11-like [Sus
           scrofa].
          Length = 330

 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
 Frame = +2

Query: 287 QGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG--GRCVPVVC 460
           +G++ +VTGAS GIG  +A  L + G  V    R +  ++  A E +S G  G  +P  C
Sbjct: 80  RGRLALVTGASGGIGAAVARALVQHGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYKC 139

Query: 461 DSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVG 640
           D S E ++ S+F  + R Q   +D+ +NNA          R  +      S W D+ NV 
Sbjct: 140 DLSNEEDILSMFSAI-RSQHSGVDICINNAGLA-------RPDSLLSGSTSGWKDMFNVN 191

Query: 641 LRGHYLCSVYAARLM 685
           +    +C+  A + M
Sbjct: 192 VLALSICTREAYQSM 206


>ref|NP_999184.1| dehydrogenase/reductase SDR family member 4 [Sus scrofa].
          Length = 260

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 14/216 (6%)
 Frame = +2

Query: 281 PMQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVC 460
           P++ +V +VT ++ GIG  IA +L + GA V ++ R  + +  T    Q  G      VC
Sbjct: 11  PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVC 70

Query: 461 DSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVG 640
              +  + + L   +A    G +D+LV+NA   V     N      ++   VWD + +V 
Sbjct: 71  HVGKAEDRERLVA-MAVNLHGGVDILVSNA--AVNPFFGN----IIDATEEVWDKILHVN 123

Query: 641 LRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSV-----PYGVGKAACDRLAADCA 805
           ++     +V   + +VP                  +       PY V K A   L  + A
Sbjct: 124 VKA----TVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLA 179

Query: 806 QELRRHGVSYVSLWPGLVQT---------ETLKEYM 886
            EL    +    L PGL++T         +  KEYM
Sbjct: 180 VELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYM 215


>ref|NP_999413.1| corticosteroid 11-beta-dehydrogenase isozyme 1 [Sus scrofa].
          Length = 292

 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 51/204 (25%), Positives = 83/204 (40%), Gaps = 8/204 (3%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCD 463
           ++G+  +VTGAS+GIGR +A  L   GA V +T R  +TL+     +   G      V  
Sbjct: 32  LRGKKVIVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSAHYVAG 91

Query: 464 SSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVN---- 631
           + ++      F   A +  G LD+L          I+N+  +AF     SV+DD++    
Sbjct: 92  TMEDMTFAEQFVAKAGKLLGGLDML----------ILNHITQAFM---TSVYDDIHLVRR 138

Query: 632 --NVGLRGHYLCSVYAARLMVPAXXXXXXXXXXXXXXQYLFSVPYGVGKAACDRLAADCA 805
              V    + + SV A  ++  +                    PY   K A D   +   
Sbjct: 139 SMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKFALDGFFSSIT 198

Query: 806 QE--LRRHGVSYVSLWPGLVQTET 871
           +E  + +  VS      GL+ T+T
Sbjct: 199 KEYSVTKVNVSITLCILGLIDTDT 222


>ref|XP_001927120.1| PREDICTED: carbonyl reductase family member 4-like [Sus scrofa].
          Length = 237

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 30/86 (34%), Positives = 49/86 (56%)
 Frame = +2

Query: 293 QVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRGGRCVPVVCDSSQ 472
           +VC V G SRGIGR +A  + + G  + I  R+L   +  A +    GG  + + CD ++
Sbjct: 3   RVCAVFGGSRGIGRAVARLMAQRGYRLAIVARNLQGARAVAGDL---GGDHLALSCDVAK 59

Query: 473 ESEVQSLFQQVAREQQGRLDVLVNNA 550
           E +VQS F+++  +  G ++ LVN A
Sbjct: 60  EQDVQSTFEEI-EKNLGPVNFLVNAA 84


>ref|NP_999471.1| peroxisomal multifunctional enzyme type 2 [Sus scrofa].
          Length = 737

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYI---------TGRHLDTLQVTAQEAQSRGGR 442
           G+V +VTGA  G+GR  AL   E GA+V +          G+         +E + +GG+
Sbjct: 9   GRVVLVTGAGGGLGRTYALAFAERGASVVVNDLGGDMKGVGKGSLAADKVVEEIRRKGGK 68

Query: 443 CVPVVCDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWD 622
            V     +    E      + A +  GR+DV+VNN  AG+      R ++F       WD
Sbjct: 69  AVA----NYDSVEAGEKIVKAALDAFGRIDVVVNN--AGIL-----RDRSFSRISDEDWD 117

Query: 623 DVNNVGLRGHYL 658
            +  V LRG ++
Sbjct: 118 MIQRVHLRGSFM 129


>ref|NP_001182297.1| epidermal retinol dehydrogenase 2 [Sus scrofa].
          Length = 309

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
 Frame = +2

Query: 290 GQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLDTLQVTAQEAQSRG-GRCVPVVCDS 466
           G++ ++TGA  G+GR +AL+    G+ + +   + +  + T +  Q  G        CD 
Sbjct: 40  GEIVLITGAGSGLGRLLALKFARLGSVLVLWDINQERNEETRKMVQEAGVAGAYAYTCDC 99

Query: 467 SQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASVWDDVNNVGLR 646
           SQ  +V  +  QV +E  G + +L+NNA      I+  RK  F + P  + +   +V  +
Sbjct: 100 SQREDVYRVASQVKKE-VGDVSILINNA-----GIVTGRK--FLDCPDELMEKSLDVNFK 151

Query: 647 GH 652
            H
Sbjct: 152 AH 153


>ref|NP_001177177.1| 15-hydroxyprostaglandin dehydrogenase [Sus scrofa].
          Length = 266

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +2

Query: 284 MQGQVCVVTGASRGIGRGIALQLCEAGATVYITGRHLD--TLQVTAQEAQSRGGRCVPVV 457
           + G+V +VTGA++GIGR  A  L   GA V +   + +       A + Q    + + + 
Sbjct: 3   VNGKVALVTGAAQGIGRASAEALLLKGAKVALVDWNFEAGVKCKAALDEQFEPQKTLFIQ 62

Query: 458 CDSSQESEVQSLFQQVAREQQGRLDVLVNNAYAGVQAIINNRKKAFWESPASV 616
           CD + +++++  F++V  +  GRLD+LVNNA       +NN K   WE    +
Sbjct: 63  CDVADQAQLRDTFRKVV-DHFGRLDILVNNAG------VNNEKN--WEKTLQI 106


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,834,571
Number of extensions: 1125543
Number of successful extensions: 4300
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4267
Number of HSP's successfully gapped: 11
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000967
         (1159 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         462   e-127

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  462 bits (233), Expect = e-127
 Identities = 247/249 (99%), Gaps = 2/249 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        cccttccggggtgggcgtggctgggccacgggatcgccccgcccctgtttgtggggtccc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263074 cccttccggggtgggcgtggctgggccacgggatcgccccgcccctgtttgtggggtccc 80263133

                                                                            
Query: 61       ctcgcacatctgaagtcgtgcttccctccgcgtccacggcggaaacccggccagagcgcg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263134 ctcgcacatctgaagtcgtgcttccctccgcgtccacggcggaaacccggccagagcgcg 80263193

                                                                            
Query: 121      gacttccaccccagcgtcgtattctgacccggttgacgtcgccttgt-cccgcccctg-a 178
                ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 80263194 gacttccaccccagcgtcgtattctgacccggttgacgtcgccttgtccccgcccctgaa 80263253

                                                                            
Query: 179      aaacggaattaaagtcctccgagaacgagcgagacggtgtgacgagtccagaggcagcac 238
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263254 aaacggaattaaagtcctccgagaacgagcgagacggtgtgacgagtccagaggcagcac 80263313

                         
Query: 239      aggtggcag 247
                |||||||||
Sbjct: 80263314 aggtggcag 80263322



 Score =  353 bits (178), Expect = 1e-94
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                            
Query: 245      cagatttaaccccttctcttgtgagtcatggtagcacccatgcagggccaagtgtgcgtg 304
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263709 cagatttaaccccttctcttgtgagtcatggtagcacccatgcagggccaagtgtgcgtg 80263768

                                                                            
Query: 305      gtgacaggtgcttccaggggtattggccgtggcatcgctttacagctctgcgaagcaggt 364
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263769 gtgacaggtgcttccaggggtattggccgtggcatcgctttacagctctgcgaagcaggt 80263828

                                                                          
Query: 365      gccacagtttacatcactggccgccatcttgacacgctgcaggtcactgcccaggagg 422
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80263829 gccacagtttacatcactggccgccatcttgacacgctgcaggtcactgcccaggagg 80263886



 Score =  293 bits (148), Expect = 1e-76
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                            
Query: 778      gtgcgacaggctggctgccgactgtgcccaggagctgcggcgccacggggtcagctacgt 837
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80271374 gtgcgacaggctggctgccgactgtgcccaggagctgcggcgccacggggtcagctacgt 80271433

                                                                            
Query: 838      gtctctgtggccagggttggtgcagacagaaacgctgaaggagtacatgataaaggctga 897
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80271434 gtctctgtggccagggttggtgcagacagaaacgctgaaggagtacatgataaaggctga 80271493

                                            
Query: 898      cactgctgatgaccacatgattgagcag 925
                ||||||||||||||||||||||||||||
Sbjct: 80271494 cactgctgatgaccacatgattgagcag 80271521



 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                            
Query: 420      aggcgcaatcccgagggggccggtgtgtgcctgtggtgtgtgattcaagccaggagagtg 479
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80266700 aggcgcaatcccgagggggccggtgtgtgcctgtggtgtgtgattcaagccaggagagtg 80266759

                                                                            
Query: 480      aagtgcaaagcctatttcagcaggtggctcgagaacagcaggggcgtctagatgtgctgg 539
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80266760 aagtgcaaagcctatttcagcaggtggctcgagaacagcaggggcgtctagatgtgctgg 80266819

                                           
Query: 540      tcaacaatgcctatgctggtgtccagg 566
                |||||||||||||||||||||||||||
Sbjct: 80266820 tcaacaatgcctatgctggtgtccagg 80266846



 Score =  268 bits (135), Expect = 6e-69
 Identities = 135/135 (100%)
 Strand = Plus / Plus

                                                                            
Query: 644      agaggccactacttgtgctcggtgtatgcagcacggctgatggtaccagctggccggggg 703
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80270928 agaggccactacttgtgctcggtgtatgcagcacggctgatggtaccagctggccggggg 80270987

                                                                            
Query: 704      ctcattgtgatcatctcctccattggggggctgcagtatctcttcagtgtcccctatggt 763
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80270988 ctcattgtgatcatctcctccattggggggctgcagtatctcttcagtgtcccctatggt 80271047

                               
Query: 764      gtgggcaaagctgcg 778
                |||||||||||||||
Sbjct: 80271048 gtgggcaaagctgcg 80271062



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                            
Query: 992      acagaccccaatatcctgagcctgagcgggaaggtgctgccatcctgtgacctggcgcgg 1051
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80272484 acagaccccaatatcctgagcctgagcgggaaggtgctgccatcctgtgacctggcgcgg 80272543

                                          
Query: 1052     cgctatggcctacgggacgtggatgg 1077
                ||||||||||||||||||||||||||
Sbjct: 80272544 cgctatggcctacgggacgtggatgg 80272569



 Score =  168 bits (85), Expect = 4e-39
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                            
Query: 561      tccaggcgatcataaacaataggaagaaggcattctgggaaagccctgcctccgtttggg 620
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80266994 tccaggcgatcataaacaataggaagaaggcattctgggaaagccctgcctccgtttggg 80267053

                                         
Query: 621      atgatgtcaacaacgtgggactcag 645
                |||||||||||||||||||||||||
Sbjct: 80267054 atgatgtcaacaacgtgggactcag 80267078



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1076     ggccgccccgtccaggactacttgtctgtgagctctgttctctcccacatccccagcctg 1135
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80272708 ggccgccccgtccaggactacttgtctgtgagctctgttctctcccacatccccagcctg 80272767

                              
Query: 1136     agctggatggcctc 1149
                ||||||||||||||
Sbjct: 80272768 agctggatggcctc 80272781



 Score =  145 bits (73), Expect = 6e-32
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                            
Query: 923      cagatcaaattgccattctcatccgcggagaccacagaaatgagtggcaaatgtgtggtg 982
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80272077 cagatcaaattgccattctcatccgcggagaccacagaaatgagtggcaaatgtgtggtg 80272136

                             
Query: 983      gcactggcaacag 995
                |||||||||||||
Sbjct: 80272137 gcactggcaacag 80272149


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,143,345
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 9
Length of query: 1159
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1138
Effective length of database: 2,808,413,156
Effective search space: 3195974171528
Effective search space used: 3195974171528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)