Animal-Genome cDNA 20110601C-000975

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000975
         (1168 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur...   708   0.0  
Alignment   gi|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 2...   698   0.0  
Alignment   gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru...   340   2e-93
Alignment   gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].      317   2e-86
Alignment   gi|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taur...   306   2e-83
Alignment   gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru...   296   3e-80
Alignment   gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau...   281   6e-76
Alignment   gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like...   196   4e-50
Alignment   gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B...   195   6e-50
Alignment   gi|NP_001039676.1| AFG3-like protein 2 [Bos taurus].                 189   5e-48

>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
          Length = 440

 Score =  708 bits (1828), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 82   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 141

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE
Sbjct: 142  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 201

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 202  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 261

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 262  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 321

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 322  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 381

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 382  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 440


>ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
            [Bos taurus].
          Length = 456

 Score =  698 bits (1801), Expect = 0.0
 Identities = 359/375 (95%), Positives = 359/375 (95%), Gaps = 16/375 (4%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 82   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 141

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQE--- 353
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQE   
Sbjct: 142  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQEVRE 201

Query: 354  -------------LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 494
                         LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT
Sbjct: 202  ARHLTSLLCLSASLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 261

Query: 495  KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 674
            KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR
Sbjct: 262  KATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDR 321

Query: 675  EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 854
            EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR
Sbjct: 322  EVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARAR 381

Query: 855  IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 1034
            IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI
Sbjct: 382  IMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGI 441

Query: 1035 LEVQAKKKANLQYYA 1079
            LEVQAKKKANLQYYA
Sbjct: 442  LEVQAKKKANLQYYA 456


>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
          Length = 440

 Score =  340 bits (871), Expect = 2e-93
 Identities = 161/311 (51%), Positives = 227/311 (72%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 121  AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 181  QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTKR+DS   
Sbjct: 241  NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 301  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 361  KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 420

Query: 1026 EGILEVQAKKK 1058
            +    V  KK+
Sbjct: 421  KSKENVLYKKQ 431


>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
          Length = 406

 Score =  317 bits (811), Expect = 2e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 83   KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 143  VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 203  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 323  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 383  FEMAVAKVMQK 393


>ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus].
          Length = 418

 Score =  306 bits (784), Expect = 2e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 101  AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 160

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 161  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 221  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 280

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 281  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 341  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 401  KAYKTVIKKDEQEHEFY 417


>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
          Length = 433

 Score =  296 bits (757), Expect = 3e-80
 Identities = 144/283 (50%), Positives = 199/283 (70%)
 Frame = +3

Query: 195  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 374
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 134  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193

Query: 375  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 554
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253

Query: 555  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 734
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 254  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

Query: 735  QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 914
             +KV+ ATNR D LDPAL+R GRLDRKIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 314  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373

Query: 915  ARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV 1043
            AR   +  GA+ ++VC EAGM A+R      T +D++E + +V
Sbjct: 374  ARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKV 416


>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
          Length = 389

 Score =  281 bits (720), Expect = 6e-76
 Identities = 143/310 (46%), Positives = 200/310 (64%)
 Frame = +3

Query: 129  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 308
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 70   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 129

Query: 309  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 488
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 130  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189

Query: 489  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 668
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 190  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249

Query: 669  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEAR 848
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLDRKI   +PNE+AR
Sbjct: 250  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309

Query: 849  ARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 1028
              I++IH+  +    +++YE + + +D FNGA    VC EAGM A+R     +  ED+M+
Sbjct: 310  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMK 369

Query: 1029 GILEVQAKKK 1058
             + +V   KK
Sbjct: 370  AVRKVADSKK 379


>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
          Length = 1004

 Score =  196 bits (497), Expect = 4e-50
 Identities = 101/244 (41%), Positives = 152/244 (62%)
 Frame = +3

Query: 270  SRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPP 449
            S ++ + VD  P   +SDIGGL+    +L +A+  P+ H E F  +GIQPPKGVL+YGPP
Sbjct: 723  SAMREVAVDV-PNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPP 781

Query: 450  GTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELD 629
            G  KT++A+A A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELD
Sbjct: 782  GCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELD 841

Query: 630  AIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLD 809
            A+  +R  S  AG+    R + +LL ++DG +    V ++AATNR D +D AL+R GR+D
Sbjct: 842  ALAVERGSSSGAGN-VADRVLAQLLTEMDGIEQLKNVTILAATNRPDRIDKALMRPGRID 900

Query: 810  RKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 989
            R I  P+P+   R  I+ +    M ++ +V+  EL   TD ++GA+  AVC EA ++AL 
Sbjct: 901  RIIYVPLPDAATRREILNLQFHSMPINNEVDLNELILQTDTYSGAEIIAVCREAALLALE 960

Query: 990  RGAT 1001
               T
Sbjct: 961  EDIT 964



 Score =  174 bits (442), Expect = 1e-43
 Identities = 108/308 (35%), Positives = 173/308 (56%), Gaps = 19/308 (6%)
 Frame = +3

Query: 180  VDAEKLKPGDLVGV--NKDSYLIL--ETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQI 347
            V+ E+L     VG   N D++  +  +T  +   +R  + +   +    Y  IGGL+ Q+
Sbjct: 414  VNEERLLKSPSVGAQSNTDTFYFISSKTRVSFTKNRTNSKDQANQLKVTYDMIGGLNSQL 473

Query: 348  QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 527
            +E+ E I LP+   E F++ GI PP+GVL+YGPPGTGKT++ARA A +  A    + GP+
Sbjct: 474  KEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPE 533

Query: 528  LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 707
            ++  F G+    +R  FA A  + PSIIFIDELDA+  KR  ++   ++ V  ++L L++
Sbjct: 534  IISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMD 593

Query: 708  QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKM-N 884
             +       QV V+ ATNR   LD AL R GR D++IE  +PN + R  I+Q   R++ +
Sbjct: 594  GIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPH 653

Query: 885  VSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRR--------------GATELTHEDY 1022
            +  +    +LA     + GA  KA+C EAG+ ALRR              G  ++T +D+
Sbjct: 654  LLTEAELLQLANSAHGYVGADLKALCNEAGLHALRRVLRRQPNLPDSKMAGLVKITLKDF 713

Query: 1023 MEGILEVQ 1046
            ++G+ +++
Sbjct: 714  LQGMNDIR 721


>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
          Length = 806

 Score =  195 bits (496), Expect = 6e-50
 Identities = 110/292 (37%), Positives = 170/292 (58%), Gaps = 17/292 (5%)
 Frame = +3

Query: 195  LKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAMEVDERPTEQ-YSD 323
            ++ GD+     G+    + ++ET P+ Y               +K  + +E   E  Y D
Sbjct: 146  IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205

Query: 324  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 503
            IGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKTL+ARA A +T A 
Sbjct: 206  IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265

Query: 504  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 683
            F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  KR   EK      +
Sbjct: 266  FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322

Query: 684  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 863
            R + +LL  +DG +    V V+AATNR + +DPAL R GR DR+++  +P+   R  I+Q
Sbjct: 323  RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382

Query: 864  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            IH++ M ++ DV+ E++A  T    GA   A+C EA + A+R+    +  ED
Sbjct: 383  IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434



 Score =  192 bits (488), Expect = 5e-49
 Identities = 98/233 (42%), Positives = 145/233 (62%)
 Frame = +3

Query: 291  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 470
            V E P   + DIGGL+   +EL E +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 471  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 650
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 651  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 830
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD+ I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 831  PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 989
            P+E++R  I++ + RK  V+ DV+ E LA+ T+ F+GA    +C  A  +A+R
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700


>ref|NP_001039676.1| AFG3-like protein 2 [Bos taurus].
          Length = 805

 Score =  189 bits (479), Expect = 5e-48
 Identities = 103/265 (38%), Positives = 159/265 (60%), Gaps = 4/265 (1%)
 Frame = +3

Query: 261  EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 440
            E  ++V   E+D +    + D+ G ++   E++E +    N K+ +++LG + PKG ++ 
Sbjct: 294  ETTAKVLKDEIDVK----FKDVAGCEEAKLEIMEFVNFLKNPKQ-YQDLGAKIPKGAILT 348

Query: 441  GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 620
            GPPGTGKTLLA+A A +    F+ ++G + ++MF+G G   VRD FALA++ AP I+FID
Sbjct: 349  GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFID 408

Query: 621  ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSG 800
            E+DA+G KR      G  E + T+ +LL ++DGF   T V ++A TNR DILDPAL+R G
Sbjct: 409  EIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALMRPG 468

Query: 801  RLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR----CTDDFNGAQCKAVCVE 968
            R DR+I    P+ + RA I ++H R + +   +  E+LAR     T  F+GA    VC E
Sbjct: 469  RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSTLEKEKLARKLASLTPGFSGADVANVCNE 528

Query: 969  AGMIALRRGATELTHEDYMEGILEV 1043
            A +IA R  +  +  + + + I  V
Sbjct: 529  AALIAARHLSDSINQKHFEQAIERV 553


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,639,797
Number of extensions: 1366364
Number of successful extensions: 5829
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 5757
Number of HSP's successfully gapped: 56
Length of query: 389
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,240,222
Effective search space: 4058463270
Effective search space used: 4058463270
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000975
         (1168 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_860742.1| PREDICTED: similar to 26S protease regulatory s...   708   0.0  
Alignment   gi|XP_533187.2| PREDICTED: similar to 26S protease regulatory s...   654   0.0  
Alignment   gi|XP_849002.1| PREDICTED: similar to 26S protease regulatory s...   649   0.0  
Alignment   gi|XP_860675.1| PREDICTED: similar to 26S protease regulatory s...   479   e-137
Alignment   gi|XP_848524.1| PREDICTED: similar to peptidase (prosome, macro...   323   3e-88
Alignment   gi|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (S...   317   2e-86
Alignment   gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S...   317   2e-86
Alignment   gi|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase sub...   306   2e-83
Alignment   gi|XP_533670.1| PREDICTED: similar to 26S protease regulatory s...   306   2e-83
Alignment   gi|XP_856279.1| PREDICTED: similar to peptidase (prosome, macro...   303   2e-82

>ref|XP_860742.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
            TAT-binding protein homolog SATA) isoform 3 [Canis
            familiaris].
          Length = 371

 Score =  708 bits (1828), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 13   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 72

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE
Sbjct: 73   DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 132

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 133  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 192

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 193  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 252

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 253  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 312

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 313  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 371


>ref|XP_533187.2| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Proteasome subunit P50) isoform 1
            [Canis familiaris].
          Length = 402

 Score =  654 bits (1687), Expect = 0.0
 Identities = 338/359 (94%), Positives = 338/359 (94%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 65   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 124

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME                     LVE
Sbjct: 125  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAME---------------------LVE 163

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 164  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 223

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 224  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 283

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 284  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 343

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 344  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 402


>ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
            TAT-binding protein homolog SATA) [Canis familiaris].
          Length = 403

 Score =  649 bits (1673), Expect = 0.0
 Identities = 335/359 (93%), Positives = 336/359 (93%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLD                    GKCAVIKTSTRQTYFLPVIGLV
Sbjct: 65   KVNKTLPYLVSNVIELLD--------------------GKCAVIKTSTRQTYFLPVIGLV 104

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE
Sbjct: 105  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 164

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 165  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 224

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDA GTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 225  IGDGAKLVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLELLNQLDGF 284

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLD+KIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 285  QPNTQVKVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKMNVSPDVN 344

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARC DDFNGAQCKAVCVEAGMIALRRG TELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 345  YEELARCMDDFNGAQCKAVCVEAGMIALRRGTTELTHEDYMEGILEVQAKKKANLQYYA 403


>ref|XP_860675.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Proteasome subunit P50) isoform 2
            [Canis familiaris].
          Length = 267

 Score =  479 bits (1234), Expect(2) = e-137
 Identities = 242/243 (99%), Positives = 243/243 (100%)
 Frame = +3

Query: 351  ELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 530
            +LVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL
Sbjct: 25   QLVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 84

Query: 531  VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 710
            VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ
Sbjct: 85   VQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 144

Query: 711  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS 890
            LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS
Sbjct: 145  LDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVS 204

Query: 891  PDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQ 1070
            PDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQ
Sbjct: 205  PDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQ 264

Query: 1071 YYA 1079
            YYA
Sbjct: 265  YYA 267



 Score = 28.1 bits (61), Expect(2) = e-137
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = +1

Query: 307 QSNTVTSGAWTSRFR---SW 357
           ++N VTSGAW SRFR   SW
Sbjct: 5   RNNIVTSGAWISRFRRTSSW 24


>ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
            ATPase 1 isoform 2 [Canis familiaris].
          Length = 440

 Score =  323 bits (827), Expect = 3e-88
 Identities = 154/311 (49%), Positives = 222/311 (71%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+ G  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 121  AIVSTSVGSEHYVSILSFVDKDLLELGCSVLLNHKVHAVIGVLMDDTDPLVIVMKVEKTP 180

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DI  LD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 181  QETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G QL+Q ++G+G KL+R+ F + +E APSI+FIDE+DAIGTKR+DS   
Sbjct: 241  NQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVFIDEIDAIGTKRYDSNSG 300

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 301  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++  V  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 361  KKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 420

Query: 1026 EGILEVQAKKK 1058
            +    V  +K+
Sbjct: 421  KSKENVLYRKQ 431


>ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3 [Canis
            familiaris].
          Length = 327

 Score =  317 bits (811), Expect = 2e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 4    KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 63

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 64   VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 123

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 124  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 183

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 184  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 243

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 244  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 303

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 304  FEMAVAKVMQK 314


>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis
            familiaris].
          Length = 406

 Score =  317 bits (811), Expect = 2e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 83   KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 143  VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 203  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 323  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 383  FEMAVAKVMQK 393


>ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
            isoform 2 [Canis familiaris].
          Length = 387

 Score =  306 bits (784), Expect = 2e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 70   AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 129

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 130  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 189

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 190  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 249

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 250  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 309

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 310  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 369

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 370  KAYKTVIKKDEQEHEFY 386


>ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 1 [Canis familiaris].
          Length = 418

 Score =  306 bits (784), Expect = 2e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 101  AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 160

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 161  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 221  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 280

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 281  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 341  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 401  KAYKTVIKKDEQEHEFY 417


>ref|XP_856279.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
            ATPase 1 isoform 3 [Canis familiaris].
          Length = 414

 Score =  303 bits (776), Expect = 2e-82
 Identities = 148/311 (47%), Positives = 210/311 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+ G                            V++ P
Sbjct: 121  AIVSTSVGSEHYVSILSFVDKDLLELG--------------------------CSVEKTP 154

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DI  LD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 155  QETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 214

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G QL+Q ++G+G KL+R+ F + +E APSI+FIDE+DAIGTKR+DS   
Sbjct: 215  NQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVFIDEIDAIGTKRYDSNSG 274

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 275  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 334

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++  V  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 335  KKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 394

Query: 1026 EGILEVQAKKK 1058
            +    V  +K+
Sbjct: 395  KSKENVLYRKQ 405


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,640,775
Number of extensions: 1404680
Number of successful extensions: 5868
Number of sequences better than 1.0e-05: 73
Number of HSP's gapped: 5752
Number of HSP's successfully gapped: 88
Length of query: 389
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 284
Effective length of database: 15,374,224
Effective search space: 4366279616
Effective search space used: 4366279616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000975
         (1168 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien...   708   0.0  
Alignment   gi|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].    340   2e-93
Alignment   gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ...   317   2e-86
Alignment   gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho...   317   2e-86
Alignment   gi|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [H...   306   2e-83
Alignment   gi|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [H...   306   2e-83
Alignment   gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho...   296   3e-80
Alignment   gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie...   283   2e-76
Alignment   gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi...   199   4e-51
Alignment   gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo...   195   6e-50

>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
          Length = 439

 Score =  708 bits (1828), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 81   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 140

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE
Sbjct: 141  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 200

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 201  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 260

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 261  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 320

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 321  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 380

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 381  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439


>ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].
          Length = 440

 Score =  340 bits (871), Expect = 2e-93
 Identities = 161/311 (51%), Positives = 227/311 (72%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 121  AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 181  QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTKR+DS   
Sbjct: 241  NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 301  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 361  KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 420

Query: 1026 EGILEVQAKKK 1058
            +    V  KK+
Sbjct: 421  KSKENVLYKKQ 431


>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
          Length = 398

 Score =  317 bits (811), Expect = 2e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 75   KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 134

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 135  VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 194

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 195  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 254

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 255  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 314

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 315  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 374

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 375  FEMAVAKVMQK 385


>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
          Length = 406

 Score =  317 bits (811), Expect = 2e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 83   KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 143  VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 203  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 323  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 383  FEMAVAKVMQK 393


>ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens].
          Length = 387

 Score =  306 bits (784), Expect = 2e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 70   AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 129

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 130  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 189

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 190  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 249

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 250  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 309

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 310  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 369

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 370  KAYKTVIKKDEQEHEFY 386


>ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens].
          Length = 418

 Score =  306 bits (784), Expect = 2e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 101  AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 160

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 161  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 221  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 280

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 281  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 341  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 401  KAYKTVIKKDEQEHEFY 417


>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
          Length = 433

 Score =  296 bits (757), Expect = 3e-80
 Identities = 144/283 (50%), Positives = 199/283 (70%)
 Frame = +3

Query: 195  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 374
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 134  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193

Query: 375  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 554
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253

Query: 555  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 734
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 254  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

Query: 735  QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 914
             +KV+ ATNR D LDPAL+R GRLDRKIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 314  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373

Query: 915  ARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV 1043
            AR   +  GA+ ++VC EAGM A+R      T +D++E + +V
Sbjct: 374  ARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKV 416


>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
          Length = 403

 Score =  283 bits (724), Expect = 2e-76
 Identities = 143/310 (46%), Positives = 201/310 (64%)
 Frame = +3

Query: 129  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 308
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 84   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 143

Query: 309  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 488
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 144  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203

Query: 489  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 668
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 204  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263

Query: 669  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEAR 848
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLDRKI   +PNE+AR
Sbjct: 264  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323

Query: 849  ARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 1028
              I++IH+  +    +++YE + + +D FNGA  + VC EAGM A+R     +  ED+M+
Sbjct: 324  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMK 383

Query: 1029 GILEVQAKKK 1058
             + +V   KK
Sbjct: 384  AVRKVADSKK 393


>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
          Length = 893

 Score =  199 bits (506), Expect = 4e-51
 Identities = 118/328 (35%), Positives = 188/328 (57%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            K+ + +P+L++   ELL +  +     GA++ +     G CA+ +   +Q   LP + + 
Sbjct: 535  KLLRRVPHLLTEA-ELLQLANSAHGYVGADLKVLCNEAGLCALRRILKKQPN-LPDVKVA 592

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
               K+   D           L+ +     S ++ + +D  P   +SDIGGL+    +L +
Sbjct: 593  GLVKITLKDF----------LQAMNDIRPSAMREIAIDV-PNVSWSDIGGLESIKLKLEQ 641

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            A+  P+ H E F  +GIQPPKGVL+YGPPG  KT++A+A A ++   FL + GP+L+  +
Sbjct: 642  AVEWPLKHPESFIRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKY 701

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            +G+  + VR+ F  A+  APSIIF DELDA+  +R  S  AG+    R + +LL ++DG 
Sbjct: 702  VGESERAVRETFRKARAVAPSIIFFDELDALAVERGSSLGAGN-VADRVLAQLLTEMDGI 760

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            +    V ++AATNR D +D AL+R GR+DR I  P+P+   R  I ++    M VS +V+
Sbjct: 761  EQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVD 820

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIAL 986
             +EL   TD ++GA+  AVC EA ++AL
Sbjct: 821  LDELILQTDAYSGAEIVAVCREAALLAL 848



 Score =  169 bits (427), Expect = 6e-42
 Identities = 101/281 (35%), Positives = 157/281 (55%), Gaps = 22/281 (7%)
 Frame = +3

Query: 270  SRVKAMEVDERPTEQ-------YSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKG 428
            +RV   E+D+   EQ       Y  IGGL  Q++ + E I LP+   E F++ GI  P+G
Sbjct: 330  TRVNFTEIDKNSKEQDNQFKVTYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRG 389

Query: 429  VLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSI 608
            VL+YGPPGTGKT++ARA A +  A    + GP+++  F G+    +R  FA A  + PSI
Sbjct: 390  VLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSI 449

Query: 609  IFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPAL 788
            IFIDELDA+  KR  ++   ++ V  ++L L++ +       QV V+ ATNR   LD AL
Sbjct: 450  IFIDELDALCPKREGAQNEVEKRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAAL 509

Query: 789  LRSGRLDRKIEFPMPNEEARARIMQIHSRKM-NVSPDVNYEELARCTDDFNGAQCKAVCV 965
             R GR D++IE  +PN + R  I+Q   R++ ++  +    +LA     + GA  K +C 
Sbjct: 510  RRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCN 569

Query: 966  EAGMIALRR--------------GATELTHEDYMEGILEVQ 1046
            EAG+ ALRR              G  ++T +D+++ + +++
Sbjct: 570  EAGLCALRRILKKQPNLPDVKVAGLVKITLKDFLQAMNDIR 610


>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
          Length = 806

 Score =  195 bits (496), Expect = 6e-50
 Identities = 110/292 (37%), Positives = 170/292 (58%), Gaps = 17/292 (5%)
 Frame = +3

Query: 195  LKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAMEVDERPTEQ-YSD 323
            ++ GD+     G+    + ++ET P+ Y               +K  + +E   E  Y D
Sbjct: 146  IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205

Query: 324  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 503
            IGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKTL+ARA A +T A 
Sbjct: 206  IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265

Query: 504  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 683
            F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  KR   EK      +
Sbjct: 266  FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322

Query: 684  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 863
            R + +LL  +DG +    V V+AATNR + +DPAL R GR DR+++  +P+   R  I+Q
Sbjct: 323  RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382

Query: 864  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            IH++ M ++ DV+ E++A  T    GA   A+C EA + A+R+    +  ED
Sbjct: 383  IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434



 Score =  192 bits (488), Expect = 5e-49
 Identities = 98/233 (42%), Positives = 145/233 (62%)
 Frame = +3

Query: 291  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 470
            V E P   + DIGGL+   +EL E +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 471  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 650
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 651  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 830
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD+ I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 831  PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 989
            P+E++R  I++ + RK  V+ DV+ E LA+ T+ F+GA    +C  A  +A+R
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,553,970
Number of extensions: 1366724
Number of successful extensions: 5382
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 5305
Number of HSP's successfully gapped: 56
Length of query: 389
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 285
Effective length of database: 14,868,908
Effective search space: 4237638780
Effective search space used: 4237638780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000975
         (1168 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu...   708   0.0  
Alignment   gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].    340   2e-93
Alignment   gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].    317   1e-86
Alignment   gi|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculu...   306   2e-83
Alignment   gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].    296   3e-80
Alignment   gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul...   283   2e-76
Alignment   gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform...   196   4e-50
Alignment   gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ...   196   4e-50
Alignment   gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ...   195   5e-50
Alignment   gi|NP_081406.1| AFG3-like protein 2 [Mus musculus].                  187   1e-47

>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
          Length = 442

 Score =  708 bits (1828), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 84   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 143

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE
Sbjct: 144  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 203

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 204  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 263

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 264  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 323

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 324  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 383

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 384  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 442


>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
          Length = 440

 Score =  340 bits (871), Expect = 2e-93
 Identities = 161/311 (51%), Positives = 227/311 (72%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 121  AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 181  QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTKR+DS   
Sbjct: 241  NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 301  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 361  KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 420

Query: 1026 EGILEVQAKKK 1058
            +    V  KK+
Sbjct: 421  KSKENVLYKKQ 431


>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
          Length = 406

 Score =  317 bits (811), Expect = 1e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 83   KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 143  VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 203  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 323  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 383  FEMAVAKVMQK 393


>ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus].
          Length = 418

 Score =  306 bits (784), Expect = 2e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 101  AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 160

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 161  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 221  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 280

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 281  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 341  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 401  KAYKTVIKKDEQEHEFY 417


>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
          Length = 475

 Score =  296 bits (757), Expect = 3e-80
 Identities = 144/283 (50%), Positives = 199/283 (70%)
 Frame = +3

Query: 195  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 374
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 176  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 235

Query: 375  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 554
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 236  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 295

Query: 555  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 734
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 296  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 355

Query: 735  QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 914
             +KV+ ATNR D LDPAL+R GRLDRKIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 356  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 415

Query: 915  ARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV 1043
            AR   +  GA+ ++VC EAGM A+R      T +D++E + +V
Sbjct: 416  ARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKV 458


>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
          Length = 389

 Score =  283 bits (724), Expect = 2e-76
 Identities = 143/310 (46%), Positives = 201/310 (64%)
 Frame = +3

Query: 129  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 308
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 70   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 129

Query: 309  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 488
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 130  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 189

Query: 489  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 668
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 190  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 249

Query: 669  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEAR 848
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLDRKI   +PNE+AR
Sbjct: 250  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 309

Query: 849  ARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 1028
              I++IH+  +    +++YE + + +D FNGA  + VC EAGM A+R     +  ED+M+
Sbjct: 310  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMK 369

Query: 1029 GILEVQAKKK 1058
             + +V   KK
Sbjct: 370  AVRKVADSKK 379


>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
          Length = 893

 Score =  196 bits (497), Expect = 4e-50
 Identities = 98/228 (42%), Positives = 146/228 (64%)
 Frame = +3

Query: 303  PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 482
            P   +SDIGGL+    +L +A+  P+ H + F  +GIQPPKGVL+YGPPG  KT++A+A 
Sbjct: 622  PNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKAL 681

Query: 483  AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 662
            A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELDA+  +R  S  
Sbjct: 682  ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 741

Query: 663  AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEE 842
            AG+    R + +LL ++DG +    V V+AATNR D +D AL+R GR+DR I  P+P+  
Sbjct: 742  AGN-VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 800

Query: 843  ARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIAL 986
             R  I+ +    M +S +V+ +EL   TD ++GA+  AVC EA ++AL
Sbjct: 801  TRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAALLAL 848



 Score =  167 bits (422), Expect = 2e-41
 Identities = 113/349 (32%), Positives = 183/349 (52%), Gaps = 19/349 (5%)
 Frame = +3

Query: 57   VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL-VGVNKDS 233
            +D      DG+ + L+     KC+    S+++    PV    + + LKP       N D+
Sbjct: 268  LDVTQSPRDGSGLGLEESTGLKCSF--DSSKEGNTQPVS---EEKLLKPASAGTKSNTDT 322

Query: 234  YLILETLPTEYDSR---VKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFEN 404
            +  + +  T  + R     + E D +    Y  IGGL+ Q++ + E I LP+   E F++
Sbjct: 323  FYFISST-TRINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKS 381

Query: 405  LGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFAL 584
             GI  P+G+L+YGPPGTGKT++ARA A +  A    + GP+++  F G+    +R  FA 
Sbjct: 382  YGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAE 441

Query: 585  AKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNR 764
            A  + PSIIFIDELDA+  KR  ++   ++ V  ++L L++ +       +V V+ ATNR
Sbjct: 442  ATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNR 501

Query: 765  VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKM-NVSPDVNYEELARCTDDFNG 941
               LD AL R GR D++IE  +PN + R  I+Q   R++ ++        LA     + G
Sbjct: 502  PQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVG 561

Query: 942  AQCKAVCVEAGMIALRR--------------GATELTHEDYMEGILEVQ 1046
            A  KA+C EAG+ ALRR              G  ++T  D+++G+ +++
Sbjct: 562  ADLKALCNEAGLHALRRVLRKQPNLPDSKVAGMVKITLNDFLQGMNDIR 610


>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
          Length = 892

 Score =  196 bits (497), Expect = 4e-50
 Identities = 98/228 (42%), Positives = 146/228 (64%)
 Frame = +3

Query: 303  PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 482
            P   +SDIGGL+    +L +A+  P+ H + F  +GIQPPKGVL+YGPPG  KT++A+A 
Sbjct: 621  PNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVLLYGPPGCSKTMIAKAL 680

Query: 483  AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 662
            A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELDA+  +R  S  
Sbjct: 681  ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 740

Query: 663  AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEE 842
            AG+    R + +LL ++DG +    V V+AATNR D +D AL+R GR+DR I  P+P+  
Sbjct: 741  AGN-VADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 799

Query: 843  ARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIAL 986
             R  I+ +    M +S +V+ +EL   TD ++GA+  AVC EA ++AL
Sbjct: 800  TRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAALLAL 847



 Score =  167 bits (422), Expect = 2e-41
 Identities = 113/349 (32%), Positives = 183/349 (52%), Gaps = 19/349 (5%)
 Frame = +3

Query: 57   VDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDL-VGVNKDS 233
            +D      DG+ + L+     KC+    S+++    PV    + + LKP       N D+
Sbjct: 267  LDVTQSPRDGSGLGLEESTGLKCSF--DSSKEGNTQPVS---EEKLLKPASAGTKSNTDT 321

Query: 234  YLILETLPTEYDSR---VKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFEN 404
            +  + +  T  + R     + E D +    Y  IGGL+ Q++ + E I LP+   E F++
Sbjct: 322  FYFISST-TRINLRKICTNSKEQDSQFKVTYDMIGGLNSQLKAIREIIELPLKQPELFKS 380

Query: 405  LGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFAL 584
             GI  P+G+L+YGPPGTGKT++ARA A +  A    + GP+++  F G+    +R  FA 
Sbjct: 381  YGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVINGPEIISKFYGETEARLRQIFAE 440

Query: 585  AKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNR 764
            A  + PSIIFIDELDA+  KR  ++   ++ V  ++L L++ +       +V V+ ATNR
Sbjct: 441  ATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTLMDGIGSEGSEGRVLVLGATNR 500

Query: 765  VDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKM-NVSPDVNYEELARCTDDFNG 941
               LD AL R GR D++IE  +PN + R  I+Q   R++ ++        LA     + G
Sbjct: 501  PQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRVPHLLTKAELLRLANNAHGYVG 560

Query: 942  AQCKAVCVEAGMIALRR--------------GATELTHEDYMEGILEVQ 1046
            A  KA+C EAG+ ALRR              G  ++T  D+++G+ +++
Sbjct: 561  ADLKALCNEAGLHALRRVLRKQPNLPDSKVAGMVKITLNDFLQGMNDIR 609


>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
          Length = 806

 Score =  195 bits (496), Expect = 5e-50
 Identities = 110/292 (37%), Positives = 170/292 (58%), Gaps = 17/292 (5%)
 Frame = +3

Query: 195  LKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAMEVDERPTEQ-YSD 323
            ++ GD+     G+    + ++ET P+ Y               +K  + +E   E  Y D
Sbjct: 146  IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205

Query: 324  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 503
            IGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKTL+ARA A +T A 
Sbjct: 206  IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265

Query: 504  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 683
            F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  KR   EK      +
Sbjct: 266  FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322

Query: 684  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 863
            R + +LL  +DG +    V V+AATNR + +DPAL R GR DR+++  +P+   R  I+Q
Sbjct: 323  RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382

Query: 864  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            IH++ M ++ DV+ E++A  T    GA   A+C EA + A+R+    +  ED
Sbjct: 383  IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434



 Score =  192 bits (488), Expect = 4e-49
 Identities = 98/233 (42%), Positives = 145/233 (62%)
 Frame = +3

Query: 291  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 470
            V E P   + DIGGL+   +EL E +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 471  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 650
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 651  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 830
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD+ I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 831  PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 989
            P+E++R  I++ + RK  V+ DV+ E LA+ T+ F+GA    +C  A  +A+R
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700


>ref|NP_081406.1| AFG3-like protein 2 [Mus musculus].
          Length = 802

 Score =  187 bits (476), Expect = 1e-47
 Identities = 103/265 (38%), Positives = 159/265 (60%), Gaps = 4/265 (1%)
 Frame = +3

Query: 261  EYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMY 440
            E  ++V   E+D +    + D+ G ++   E++E +    N K+ +++LG + PKG ++ 
Sbjct: 292  ETTAKVLKDEIDVK----FKDVAGCEEAKLEIMEFVNFLKNPKQ-YQDLGAKIPKGAILT 346

Query: 441  GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFID 620
            GPPGTGKTLLA+A A +    F+ ++G + ++MF+G G   VRD FALA++ AP I+FID
Sbjct: 347  GPPGTGKTLLAKATAGEANVPFITVSGSEFLEMFVGVGPARVRDLFALARKNAPCILFID 406

Query: 621  ELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSG 800
            E+DA+G KR      G  E + T+ +LL ++DGF   T V ++A TNR DILDPALLR G
Sbjct: 407  EIDAVGRKRGRGNFGGQSEQENTLNQLLVEMDGFNTTTNVVILAGTNRPDILDPALLRPG 466

Query: 801  RLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELAR----CTDDFNGAQCKAVCVE 968
            R DR+I    P+ + RA I ++H R + +   +  ++LAR     T  F+GA    VC E
Sbjct: 467  RFDRQIFIGPPDIKGRASIFKVHLRPLKLDSALEKDKLARKLASLTPGFSGADVANVCNE 526

Query: 969  AGMIALRRGATELTHEDYMEGILEV 1043
            A +IA R  +  +  + + + I  V
Sbjct: 527  AALIAARHLSDAINEKHFEQAIERV 551


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,111,325
Number of extensions: 1131865
Number of successful extensions: 4512
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 4452
Number of HSP's successfully gapped: 41
Length of query: 389
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 286
Effective length of database: 12,523,851
Effective search space: 3581821386
Effective search space used: 3581821386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000975
         (1168 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6...   708   0.0  
Alignment   gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4...   340   1e-93
Alignment   gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4...   340   1e-93
Alignment   gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].      317   1e-86
Alignment   gi|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease...   306   1e-83
Alignment   gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7...   296   2e-80
Alignment   gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7...   296   2e-80
Alignment   gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1...   283   1e-76
Alignment   gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ...   195   4e-50
Alignment   gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc...   194   1e-49

>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
          Length = 439

 Score =  708 bits (1828), Expect = 0.0
 Identities = 359/359 (100%), Positives = 359/359 (100%)
 Frame = +3

Query: 3    KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 182
            KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV
Sbjct: 81   KVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAVIKTSTRQTYFLPVIGLV 140

Query: 183  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 362
            DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE
Sbjct: 141  DAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVE 200

Query: 363  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 542
            AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF
Sbjct: 201  AIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMF 260

Query: 543  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 722
            IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF
Sbjct: 261  IGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF 320

Query: 723  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 902
            QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN
Sbjct: 321  QPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVN 380

Query: 903  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 1079
            YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA
Sbjct: 381  YEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439


>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
          Length = 367

 Score =  340 bits (871), Expect = 1e-93
 Identities = 161/311 (51%), Positives = 227/311 (72%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 48   AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 107

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 108  QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 167

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTKR+DS   
Sbjct: 168  NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 227

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 228  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 287

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 288  KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 347

Query: 1026 EGILEVQAKKK 1058
            +    V  KK+
Sbjct: 348  KSKENVLYKKQ 358


>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa].
          Length = 440

 Score =  340 bits (871), Expect = 1e-93
 Identities = 161/311 (51%), Positives = 227/311 (72%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 121  AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 180

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
             E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 181  QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 240

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
             QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTKR+DS   
Sbjct: 241  NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 300

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
            G+RE+QRTMLELLNQLDGF     VKVI ATNR++ LDPAL+R GR+DRKIEFP+P+E+ 
Sbjct: 301  GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            + RI QIH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR    ++T+ED+ 
Sbjct: 361  KKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 420

Query: 1026 EGILEVQAKKK 1058
            +    V  KK+
Sbjct: 421  KSKENVLYKKQ 431


>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
          Length = 406

 Score =  317 bits (811), Expect = 1e-86
 Identities = 161/311 (51%), Positives = 210/311 (67%)
 Frame = +3

Query: 120  KCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDE 299
            K  ++K      + + V   +D   + P   V +  DSY + + LP + D  V  M V++
Sbjct: 83   KKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEK 142

Query: 300  RPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARA 479
             P   Y  IGGLDKQI+E+ E I LP+ H E FE LGI  PKGVL+YGPPGTGKTLLARA
Sbjct: 143  VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 202

Query: 480  CAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSE 659
             A  T  TF++++G +LVQ FIG+GA++VR+ F +A+E APSIIF+DE+D+IG+ R +  
Sbjct: 203  VAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGG 262

Query: 660  KAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNE 839
              GD EVQRTMLELLNQLDGF+    +KVI ATNR+DILD ALLR GR+DRKIEFP PNE
Sbjct: 263  SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNE 322

Query: 840  EARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            EAR  I++IHSRKMN++  +N  ++A      +GA+ K VC EAGM ALR     +T ED
Sbjct: 323  EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQED 382

Query: 1020 YMEGILEVQAK 1052
            +   + +V  K
Sbjct: 383  FEMAVAKVMQK 393


>ref|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
            6B-like [Sus scrofa].
          Length = 418

 Score =  306 bits (784), Expect = 1e-83
 Identities = 148/317 (46%), Positives = 213/317 (67%)
 Frame = +3

Query: 126  AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 305
            A++ ++T   Y++ ++  +D E LKP   V ++K S  +++ LP E DS +  +  D++P
Sbjct: 101  AIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKP 160

Query: 306  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 485
               Y+DIGG+D Q QE+ EA+ LP+ H E ++ +GI PP+GVLMYGPPG GKT+LA+A A
Sbjct: 161  DVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVA 220

Query: 486  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 665
              T A F+++ G + VQ ++G+G ++VRD F LAKE AP+IIFIDE+DAI TKRFD++  
Sbjct: 221  HHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG 280

Query: 666  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 845
             DREVQR +LELLNQ+DGF  N  VKVI ATNR D LDPALLR GRLDRKIEFP+P+   
Sbjct: 281  ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 340

Query: 846  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYM 1025
            +  I    + KMN+S +V+ E+     D  +GA   ++C E+GM+A+R     +  +D+ 
Sbjct: 341  KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFE 400

Query: 1026 EGILEVQAKKKANLQYY 1076
            +    V  K +   ++Y
Sbjct: 401  KAYKTVIKKDEQEHEFY 417


>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
          Length = 480

 Score =  296 bits (757), Expect = 2e-80
 Identities = 144/283 (50%), Positives = 199/283 (70%)
 Frame = +3

Query: 195  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 374
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 181  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 240

Query: 375  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 554
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 241  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 300

Query: 555  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 734
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 301  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 360

Query: 735  QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 914
             +KV+ ATNR D LDPAL+R GRLDRKIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 361  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 420

Query: 915  ARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV 1043
            AR   +  GA+ ++VC EAGM A+R      T +D++E + +V
Sbjct: 421  ARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKV 463


>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
          Length = 433

 Score =  296 bits (757), Expect = 2e-80
 Identities = 144/283 (50%), Positives = 199/283 (70%)
 Frame = +3

Query: 195  LKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVL 374
            ++ G  VGV+++ Y I   LP + D  V  M+V+E+P   YSD+GG  +QI++L E +  
Sbjct: 134  IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVET 193

Query: 375  PMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDG 554
            P+ H E+F NLGI+PPKGVL++GPPGTGKTL ARA A +T A F+++ G +LVQ ++G+G
Sbjct: 194  PLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 253

Query: 555  AKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNT 734
            A++VR+ F +A+ K   +IF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF P  
Sbjct: 254  ARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 313

Query: 735  QVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEEL 914
             +KV+ ATNR D LDPAL+R GRLDRKIEF +P+ E R  I +IH+R M+V  D+ +E L
Sbjct: 314  NIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELL 373

Query: 915  ARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEV 1043
            AR   +  GA+ ++VC EAGM A+R      T +D++E + +V
Sbjct: 374  ARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKV 416


>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
          Length = 403

 Score =  283 bits (724), Expect = 1e-76
 Identities = 143/310 (46%), Positives = 201/310 (64%)
 Frame = +3

Query: 129  VIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPT 308
            ++K +    Y +     +D  KLKPG  V ++  +  I+  LP E D  V  M  ++   
Sbjct: 84   IVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGN 143

Query: 309  EQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAA 488
              YS+IGGL +QI+EL E I LP+ + E F+ +GI PPKG L+YGPPGTGKTLLARA A+
Sbjct: 144  VSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVAS 203

Query: 489  QTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAG 668
            Q    FLK+    +V  +IG+ A+L+R+ F  A++  P IIF+DE+DAIG +RF    + 
Sbjct: 204  QLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSA 263

Query: 669  DREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEAR 848
            DRE+QRT++ELLNQ+DGF    +VK+I ATNR D LDPALLR GRLDRKI   +PNE+AR
Sbjct: 264  DREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQAR 323

Query: 849  ARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 1028
              I++IH+  +    +++YE + + +D FNGA  + VC EAGM A+R     +  ED+M+
Sbjct: 324  LDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMK 383

Query: 1029 GILEVQAKKK 1058
             + +V   KK
Sbjct: 384  AVRKVADSKK 393


>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
          Length = 806

 Score =  195 bits (496), Expect = 4e-50
 Identities = 110/292 (37%), Positives = 170/292 (58%), Gaps = 17/292 (5%)
 Frame = +3

Query: 195  LKPGDLV----GVNKDSYLILETLPTEY------------DSRVKAMEVDERPTEQ-YSD 323
            ++ GD+     G+    + ++ET P+ Y               +K  + +E   E  Y D
Sbjct: 146  IRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205

Query: 324  IGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKAT 503
            IGG  KQ+ ++ E + LP+ H   F+ +G++PP+G+L+YGPPGTGKTL+ARA A +T A 
Sbjct: 206  IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265

Query: 504  FLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQ 683
            F  + GP+++    G+    +R AF  A++ AP+IIFIDELDAI  KR   EK      +
Sbjct: 266  FFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKTHGEVER 322

Query: 684  RTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQ 863
            R + +LL  +DG +    V V+AATNR + +DPAL R GR DR+++  +P+   R  I+Q
Sbjct: 323  RIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQ 382

Query: 864  IHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHED 1019
            IH++ M ++ DV+ E++A  T    GA   A+C EA + A+R+    +  ED
Sbjct: 383  IHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434



 Score =  191 bits (485), Expect = 7e-49
 Identities = 97/233 (41%), Positives = 145/233 (62%)
 Frame = +3

Query: 291  VDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLL 470
            V E P   + DIGGL+   +EL + +  P+ H +KF   G+ P KGVL YGPPG GKTLL
Sbjct: 468  VVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527

Query: 471  ARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRF 650
            A+A A + +A F+ + GP+L+ M+ G+    VR+ F  A++ AP ++F DELD+I   R 
Sbjct: 528  AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587

Query: 651  DSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPM 830
             +   G     R + ++L ++DG      V +I ATNR DI+DPA+LR GRLD+ I  P+
Sbjct: 588  GNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 647

Query: 831  PNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 989
            P+E++R  I++ + RK  V+ DV+ E LA+ T+ F+GA    +C  A  +A+R
Sbjct: 648  PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700


>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
          Length = 887

 Score =  194 bits (492), Expect = 1e-49
 Identities = 98/228 (42%), Positives = 143/228 (62%)
 Frame = +3

Query: 303  PTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARAC 482
            P   +SDIGGL+    +L +A+  P+ H E F  +GIQPPKGVL+YGPPG  KT++A+A 
Sbjct: 616  PNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVLLYGPPGCSKTMIAKAL 675

Query: 483  AAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEK 662
            A ++   FL + GP+L+  ++G+  + VR+ F  A+  APSIIF DELDA+  +R  S  
Sbjct: 676  ANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIFFDELDALAVERGSSSG 735

Query: 663  AGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEE 842
            AG+    R + +LL  +DG +    V ++AATNR D +D AL+R GR+DR I  P+P+  
Sbjct: 736  AGN-VADRVLAQLLTXMDGIEQLKDVTILAATNRPDRIDKALMRPGRIDRIIYVPLPDAA 794

Query: 843  ARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIAL 986
             R  I  +    M +S +V+  EL   TD ++GA+  AVC EA ++AL
Sbjct: 795  TRREIFNLQFHSMPISKEVDLNELVLQTDTYSGAEIIAVCREAALLAL 842



 Score =  178 bits (452), Expect = 4e-45
 Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 19/308 (6%)
 Frame = +3

Query: 180  VDAEKLKPGDLVGV--NKDSYLILETLPTEYDSRV--KAMEVDERPTEQYSDIGGLDKQI 347
            ++ E+L     VG   N D++  + +      ++V  K+ + D +    Y  IGGL+ Q+
Sbjct: 297  INEERLLKSPSVGAKCNTDTFYFISSTTRVNFTKVCTKSKDQDNQLKVTYDMIGGLNSQL 356

Query: 348  QELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 527
            +E+ E I LP+   E F++ GI PP+GVL+YGPPGTGKT++ARA A +  A    + GP+
Sbjct: 357  KEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANEVGAYVSVINGPE 416

Query: 528  LVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLN 707
            ++  F G+    +R  FA A  + PSIIFIDELDA+  KR  ++   ++ V  ++L L++
Sbjct: 417  IISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVEKRVVASLLTLMD 476

Query: 708  QLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKM-N 884
             +       QV V+ ATNR   LD AL R GR D++IE  +PN + R  I+Q   R++ +
Sbjct: 477  GIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRLDILQKLLRRVPH 536

Query: 885  VSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRR--------------GATELTHEDY 1022
            +  +    +LA     + GA  KA+C EAG+ ALRR              G  ++T +D+
Sbjct: 537  LLTEAELLQLANSAHGYVGADLKALCNEAGLYALRRVLRKQPNLPDSKVAGLVKITLKDF 596

Query: 1023 MEGILEVQ 1046
            ++G+ +++
Sbjct: 597  LQGMNDIR 604


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,117,304
Number of extensions: 881690
Number of successful extensions: 3691
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 3628
Number of HSP's successfully gapped: 37
Length of query: 389
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 288
Effective length of database: 8,829,335
Effective search space: 2542848480
Effective search space used: 2542848480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000975
         (1168 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                         353   1e-94

>Sscrofa_Chr02 
||          Length = 162569375

 Score =  353 bits (178), Expect = 1e-94
 Identities = 184/186 (98%)
 Strand = Plus / Plus

                                                                            
Query: 971      gggcatgatcgcgctgcgcaggggcgccacagagctcacccacgaggactacatggaggg 1030
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16397650 gggcatgatcgcgctgcgcaggggcgccacagagctcacccacgaggactacatggaggg 16397709

                                                                            
Query: 1031     catcctggaggtccaggctaagaagaaggccaacctgcagtactacgcctaggctcgccg 1090
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16397710 catcctggaggtccaggctaagaagaaggccaacctgcagtactacgcctaggctcgccg 16397769

                                                                            
Query: 1091     ccacacctgctgtctggtctgttgctggtcaagactcgtaataaagggtggtttcaggtt 1150
                ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16397770 ccacacctgctgtctggtctgttgctggtcaagactcgtaataaaggatggtttcaggtt 16397829

                      
Query: 1151     tctgcc 1156
                 |||||
Sbjct: 16397830 cctgcc 16397835



 Score =  299 bits (151), Expect = 2e-78
 Identities = 151/151 (100%)
 Strand = Plus / Plus

                                                                            
Query: 496      aggccaccttcctgaagttggcgggcccccagctggtgcagatgttcattggggatggtg 555
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395235 aggccaccttcctgaagttggcgggcccccagctggtgcagatgttcattggggatggtg 16395294

                                                                            
Query: 556      ccaagctggtccgggacgcctttgctctggccaaggagaaagcgccgtctatcatcttca 615
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395295 ccaagctggtccgggacgcctttgctctggccaaggagaaagcgccgtctatcatcttca 16395354

                                               
Query: 616      ttgatgagctggatgccattggtaccaagcg 646
                |||||||||||||||||||||||||||||||
Sbjct: 16395355 ttgatgagctggatgccattggtaccaagcg 16395385



 Score =  293 bits (148), Expect = 1e-76
 Identities = 148/148 (100%)
 Strand = Plus / Plus

                                                                            
Query: 742      aggtgattgcagccactaacagggtggacatcctggaccctgcccttctccgctcaggcc 801
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396424 aggtgattgcagccactaacagggtggacatcctggaccctgcccttctccgctcaggcc 16396483

                                                                            
Query: 802      gcctggaccgcaagattgagttcccgatgcccaacgaggaggcccgggccagaatcatgc 861
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396484 gcctggaccgcaagattgagttcccgatgcccaacgaggaggcccgggccagaatcatgc 16396543

                                            
Query: 862      agatccactcccgaaagatgaacgtcag 889
                ||||||||||||||||||||||||||||
Sbjct: 16396544 agatccactcccgaaagatgaacgtcag 16396571



 Score =  291 bits (147), Expect = 4e-76
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                            
Query: 352      agctggtggaggccattgtcctgccaatgaaccacaaggagaagtttgagaacttgggga 411
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394963 agctggtggaggccattgtcctgccaatgaaccacaaggagaagtttgagaacttgggga 16395022

                                                                            
Query: 412      tccagcctccaaagggggtgctgatgtacgggcccccaggtacagggaagaccttgctgg 471
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16395023 tccagcctccaaagggggtgctgatgtacgggcccccaggtacagggaagaccttgctgg 16395082

                                           
Query: 472      cccgggcctgtgctgcacagaccaagg 498
                |||||||||||||||||||||||||||
Sbjct: 16395083 cccgggcctgtgctgcacagaccaagg 16395109



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                            
Query: 215      gggtgtgaacaaagactcctacctgatcctggagaccctgcccacagagtatgactcgag 274
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394387 gggtgtgaacaaagactcctacctgatcctggagaccctgcccacagagtatgactcgag 16394446

                                                                            
Query: 275      ggtgaaggccatggaggtggacgagaggcccacagagcaatacagtgacatcgggggcct 334
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394447 ggtgaaggccatggaggtggacgagaggcccacagagcaatacagtgacatcgggggcct 16394506

                                   
Query: 335      ggacaagcagattcaggag 353
                |||||||||||||||||||
Sbjct: 16394507 ggacaagcagattcaggag 16394525



 Score =  212 bits (107), Expect = 3e-52
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                            
Query: 46       agcttctggacgttgatcccaatgaccaagaggaagatggtgccaatattgacctggatt 105
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393860 agcttctggacgttgatcccaatgaccaagaggaagatggtgccaatattgacctggatt 16393919

                                                               
Query: 106      cccagaggaagggcaagtgtgcagtgatcaaaacctctacacgacag 152
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393920 cccagaggaagggcaagtgtgcagtgatcaaaacctctacacgacag 16393966



 Score =  202 bits (102), Expect = 3e-49
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                            
Query: 646      gctttgacagcgagaaggccggagaccgggaggtgcagaggacgatgctggagcttctga 705
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396103 gctttgacagcgagaaggccggagaccgggaggtgcagaggacgatgctggagcttctga 16396162

                                                          
Query: 706      accagctggatggattccagcccaacacccaagtgaaggtga 747
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16396163 accagctggatggattccagcccaacacccaagtgaaggtga 16396204



 Score =  170 bits (86), Expect = 1e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                            
Query: 887      cagtcccgacgtgaactacgaggagctggcccgctgtacagatgacttcaacggggccca 946
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16397411 cagtcccgacgtgaactacgaggagctggcccgctgtacagatgacttcaacggggccca 16397470

                                          
Query: 947      gtgcaaggctgtgtgtgtggaggcgg 972
                ||||||||||||||||||||||||||
Sbjct: 16397471 gtgcaaggctgtgtgtgtggaggcgg 16397496



 Score =  135 bits (68), Expect = 6e-29
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                            
Query: 149      acagacatactttctacctgtgattgggttggtggatgctgaaaagctgaagccaggaga 208
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16394063 acagacatactttctacctgtgattgggttggtggatgctgaaaagctgaagccaggaga 16394122

                        
Query: 209      cttggtgg 216
                ||||||||
Sbjct: 16394123 cttggtgg 16394130



 Score = 93.7 bits (47), Expect = 2e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                               
Query: 1        tcaaagtgaataagaccctgccgtacctggtctccaacgtcatcgag 47
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16393380 tcaaagtgaataagaccctgccgtacctggtctccaacgtcatcgag 16393426


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,687,774
Number of extensions: 190
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 10
Length of query: 1168
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1147
Effective length of database: 2,808,413,156
Effective search space: 3221249889932
Effective search space used: 3221249889932
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)