Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000985
(1129 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_963900.1| 39S ribosomal protein L12, mitochondrial precur... 267 1e-71
>ref|NP_963900.1| 39S ribosomal protein L12, mitochondrial precursor [Bos taurus].
Length = 198
Score = 267 bits (682), Expect = 1e-71
Identities = 142/198 (71%), Positives = 152/198 (76%)
Frame = +2
Query: 224 MLPAAASSLWGPCFGLRAAALRVARHQGPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEY 403
MLP+A S L GPC GLRAAALR+ R Q P +C VRLMRCSSHR+GEAL GAPLDNAPKEY
Sbjct: 1 MLPSATSLLRGPCLGLRAAALRLVRQQVPHVCAVRLMRCSSHRRGEALTGAPLDNAPKEY 60
Query: 404 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGFXXXXXXXXXXXXXXXXXXXXXED 583
PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVG ED
Sbjct: 61 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGAAPAPTAPEAAEED 120
Query: 584 LPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVPXXX 763
+PK+KE+THFTVRLTEAKPVDKVKLIKEIK+++QGINLVQAKKLVESLPQEIKANV
Sbjct: 121 VPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVAKAE 180
Query: 764 XXXXXXXXXXVGGTVVLE 817
VGGTVVLE
Sbjct: 181 AEKIKAALEAVGGTVVLE 198
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,074,864
Number of extensions: 1135625
Number of successful extensions: 6127
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6088
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000985
(1129 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850016.1| PREDICTED: similar to 39S ribosomal protein L12... 263 2e-70
>ref|XP_850016.1| PREDICTED: similar to 39S ribosomal protein L12, mitochondrial
precursor (L12mt) (MRP-L12) (5c5-2) [Canis familiaris].
Length = 198
Score = 263 bits (672), Expect = 2e-70
Identities = 141/198 (71%), Positives = 150/198 (75%)
Frame = +2
Query: 224 MLPAAASSLWGPCFGLRAAALRVARHQGPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEY 403
MLP AA LWG C L+ AALR+AR Q PR+C VRLMRCSSHR GEALAGAPLDNAPKEY
Sbjct: 1 MLPPAARPLWGSCLRLQGAALRLARQQVPRVCAVRLMRCSSHRMGEALAGAPLDNAPKEY 60
Query: 404 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGFXXXXXXXXXXXXXXXXXXXXXED 583
PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVG E+
Sbjct: 61 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGAMPSAAPAAAAPEAVEEE 120
Query: 584 LPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVPXXX 763
+PK+KE+THFTVRLTEAKPVDKVKLIKEIK++I GINLVQAKKLVESLPQEIKANV
Sbjct: 121 IPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYIPGINLVQAKKLVESLPQEIKANVAKAE 180
Query: 764 XXXXXXXXXXVGGTVVLE 817
VGGTVVLE
Sbjct: 181 AEKIKAALEAVGGTVVLE 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,687,413
Number of extensions: 1134904
Number of successful extensions: 6323
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6304
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000985
(1129 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002940.2| 39S ribosomal protein L12, mitochondrial precur... 258 9e-69
>ref|NP_002940.2| 39S ribosomal protein L12, mitochondrial precursor [Homo sapiens].
Length = 198
Score = 258 bits (658), Expect = 9e-69
Identities = 140/198 (70%), Positives = 148/198 (74%)
Frame = +2
Query: 224 MLPAAASSLWGPCFGLRAAALRVARHQGPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEY 403
MLPAAA LWGPC GLRAAA R+AR Q P +C VR MR S H++ EALAGAPLDNAPKEY
Sbjct: 1 MLPAAARPLWGPCLGLRAAAFRLARRQVPCVCAVRHMRSSGHQRCEALAGAPLDNAPKEY 60
Query: 404 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGFXXXXXXXXXXXXXXXXXXXXXED 583
PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVG ED
Sbjct: 61 PPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLVPMGGVMSGAVPAAAAQEAVEED 120
Query: 584 LPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVPXXX 763
+P KE+THFTVRLTEAKPVDKVKLIKEIK++IQGINLVQAKKLVESLPQEIKANV
Sbjct: 121 IPIAKERTHFTVRLTEAKPVDKVKLIKEIKNYIQGINLVQAKKLVESLPQEIKANVAKAE 180
Query: 764 XXXXXXXXXXVGGTVVLE 817
VGGTVVLE
Sbjct: 181 AEKIKAALEAVGGTVVLE 198
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,598,585
Number of extensions: 1086283
Number of successful extensions: 5621
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5589
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000985
(1129 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081480.2| 39S ribosomal protein L12, mitochondrial precur... 249 2e-66
>ref|NP_081480.2| 39S ribosomal protein L12, mitochondrial precursor [Mus musculus].
Length = 201
Score = 249 bits (637), Expect = 2e-66
Identities = 139/201 (69%), Positives = 149/201 (74%), Gaps = 3/201 (1%)
Frame = +2
Query: 224 MLPAAASS-LWGPCFGLRAAALRVARHQGPRLCGVRLMRCSSHRKGEALAGAPLDNAPKE 400
MLP AAS LWGP GLR AALR+AR Q P +C R +R SSHR+ EALAGAPLDNAPKE
Sbjct: 1 MLPVAASRCLWGPRLGLRGAALRLARQQMPSVCAARQLRSSSHRRSEALAGAPLDNAPKE 60
Query: 401 YPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGF--XXXXXXXXXXXXXXXXXXXX 574
YPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVG
Sbjct: 61 YPPKIQQLVQDIASLTLLEISDLNELLKKTLKIQDVGLMPMGGMVPGPVSAAAPASEAAE 120
Query: 575 XEDLPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVP 754
ED+PK+KE+THFTVRLTEAKPVDKVKLIKEIK+++QGINLVQAKKLVESLPQEIKANV
Sbjct: 121 EEDVPKQKERTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESLPQEIKANVA 180
Query: 755 XXXXXXXXXXXXXVGGTVVLE 817
VGGTVVLE
Sbjct: 181 KAEAEKIKAALEAVGGTVVLE 201
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,227,017
Number of extensions: 891239
Number of successful extensions: 4295
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4270
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000985
(1129 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361972.1| PREDICTED: 39S ribosomal protein L12, mitoch... 142 4e-34
Alignment gi|XP_003361696.1| PREDICTED: 39S ribosomal protein L12, mitoch... 124 7e-29
>ref|XP_003361972.1| PREDICTED: 39S ribosomal protein L12, mitochondrial-like, partial
[Sus scrofa].
Length = 88
Score = 142 bits (357), Expect = 4e-34
Identities = 70/70 (100%), Positives = 70/70 (100%)
Frame = +2
Query: 305 GPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLK 484
GPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLK
Sbjct: 1 GPRLCGVRLMRCSSHRKGEALAGAPLDNAPKEYPPKIQQLVQDIASLTLLEISDLNELLK 60
Query: 485 KTLKIQDVGF 514
KTLKIQDVGF
Sbjct: 61 KTLKIQDVGF 70
>ref|XP_003361696.1| PREDICTED: 39S ribosomal protein L12, mitochondrial-like, partial
[Sus scrofa].
Length = 83
Score = 124 bits (312), Expect = 7e-29
Identities = 66/80 (82%), Positives = 66/80 (82%)
Frame = +2
Query: 578 EDLPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGINLVQAKKLVESLPQEIKANVPX 757
EDLPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQG NLVQAKKLVESLPQEIKANVP
Sbjct: 4 EDLPKRKEQTHFTVRLTEAKPVDKVKLIKEIKSHIQGSNLVQAKKLVESLPQEIKANVPK 63
Query: 758 XXXXXXXXXXXXVGGTVVLE 817
VGGTVVLE
Sbjct: 64 AEAEKIKAALEAVGGTVVLE 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,672,916
Number of extensions: 797796
Number of successful extensions: 4032
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4011
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000985
(1129 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896096.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 377 e-102
gb|GL895087.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 327 8e-87
Sscrofa_ChrX 139 4e-30
Sscrofa_Chr03 74 2e-10
>gb|GL896096.1| Sus scrofa unplaced genomic scaffold chrU_scaffold470
Length = 1619
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 295 caggcaccagggaccgagactgtgcggtgtgcggttgatgagatgcagcagccatcgaaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caggcaccagggaccgagactgtgcggtgtgcggttgatgagatgcagcagccatcgaaa 380
Query: 355 gggggaggctcttgctggggcccccctggataacgcccccaaggagtatccccccaaaat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gggggaggctcttgctggggcccccctggataacgcccccaaggagtatccccccaaaat 320
Query: 415 ccagcagctggttcaggacattgccagccttacgctcctggagatctcagacctcaacga 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccagcagctggttcaggacattgccagccttacgctcctggagatctcagacctcaacga 260
Query: 475 gctcctgaag 484
||||||||||
Sbjct: 259 gctcctgaag 250
Score = 176 bits (89), Expect = 2e-41
Identities = 92/93 (98%)
Strand = Plus / Minus
Query: 477 tcctgaagaaaacgctgaagatccaggacgttgggttcatgcccatgggtgccgtggccc 536
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tcctgcagaaaacgctgaagatccaggacgttgggttcatgcccatgggtgccgtggccc 69
Query: 537 ctggcgctccccctgccgccgccgccccagagg 569
|||||||||||||||||||||||||||||||||
Sbjct: 68 ctggcgctccccctgccgccgccgccccagagg 36
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 135 gtcctttctagcttgaatgcctggtggctgaggcc 169
|||||||||||||||||||||||||||||||||||
Sbjct: 1232 gtcctttctagcttgaatgcctggtggctgaggcc 1198
>gb|GL895087.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3688
Length = 8695
Score = 327 bits (165), Expect = 8e-87
Identities = 181/189 (95%)
Strand = Plus / Minus
Query: 700 gcaggcgaagaagctggtggaatccctgccccaggaaatcaaagccaacgtgcccaaagc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8353 gcaggcgaagaagctggtggaatccctgccccaggaaatcaaagccaacgtgcccaaagc 8294
Query: 760 tgaggctgagaagatcaaggcggccctggaggcggtgggcggcaccgtggttctggagta 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8293 tgaggctgagaagatcaaggcggccctggaggcggtgggcggcaccgtggttctggagta 8234
Query: 820 ggcttcccggaggaccgtgcacaggggtccggnnnnnnnntccctccccgtgtggggcgc 879
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8233 ggcttcccggaggaccgtgcacaggggtccggcccccccctccctccccgtgtggggcgc 8174
Query: 880 cacctgctc 888
|||||||||
Sbjct: 8173 cacctgctc 8165
Score = 258 bits (130), Expect = 6e-66
Identities = 136/138 (98%)
Strand = Plus / Minus
Query: 567 aggccgcggaagaagacctccccaaacggaaggagcagacgcatttcaccgtccgcctga 626
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8572 aggccacggaagaagacctccccaaacggaaggagcagacgcatttcaccgtccgcctga 8513
Query: 627 cggaggcgaagcccgtggacaaggtgaagctgatcaaggagattaaaagccacatccagg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8512 cggaggcgaagcccgtggacaaggtgaagctgatcaaggagattaaaagccacatccagg 8453
Query: 687 gcatcaacctggtgcagg 704
||| ||||||||||||||
Sbjct: 8452 gcagcaacctggtgcagg 8435
Score = 89.7 bits (45), Expect = 3e-15
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 1035 gggctctggaaccttcccagtcacgcgccccctggtggtctgtgaaaaaaaagcgtt 1091
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 8064 gggctctggaaccttccaggtcacgcgccccctggtggtctgtgagaaaaaagcgtt 8008
>Sscrofa_ChrX
|| Length = 144288218
Score = 139 bits (70), Expect = 4e-30
Identities = 103/114 (90%)
Strand = Plus / Plus
Query: 1 ttaagccatgaacgaaagtttgacccatttatattaattagagttggtaaatctcgtgcc 60
||||||||| |||||||||||||| | |||||||||||||||||||||||| || ||||
Sbjct: 23490071 ttaagccataaacgaaagtttgactaagttatattaattagagttggtaaatatcctgcc 23490130
Query: 61 agccaccgcggtcatacgattaacccaaattaatagatccacggcgtaaagagt 114
||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct: 23490131 agccaccatggtcatacgattaacccaaattaatagatacacggtgtacagagt 23490184
>Sscrofa_Chr03
|| Length = 144787322
Score = 73.8 bits (37), Expect = 2e-10
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 1 ttaagccatgaacgaaagtttgacccatttatattaattagagttggtaaatctcgtgcc 60
||||||||| || ||||||||||| |||||||||| || | |||||||| || ||||
Sbjct: 44472338 ttaagccataaatgaaagtttgactaatttatattagctactggtggtaaatttcatgcc 44472397
Query: 61 agccaccgcggtcatacgattaacccaaattaataga 97
||||| || ||||||||||||||||||||||||||
Sbjct: 44472398 agccattgcaatcatacgattaacccaaattaataga 44472434
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,284,122
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 8
Length of query: 1129
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1108
Effective length of database: 2,808,413,156
Effective search space: 3111721776848
Effective search space used: 3111721776848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)