Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000996
(1186 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093785.1| transmembrane protein 189 [Bos taurus]. 554 e-158
>ref|NP_001093785.1| transmembrane protein 189 [Bos taurus].
Length = 271
Score = 554 bits (1428), Expect = e-158
Identities = 252/271 (92%), Positives = 262/271 (96%)
Frame = +1
Query: 106 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 285
MAGAEDGPGQQ EL++DEAA CRRWGAQHAGARELAALYSPGKRFQEWC V+LCFSLIAH
Sbjct: 1 MAGAEDGPGQQPELEDDEAASCRRWGAQHAGARELAALYSPGKRFQEWCCVVLCFSLIAH 60
Query: 286 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 465
NM HLLLLARWEHTPLVMLG+VAGAL+ADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE
Sbjct: 61 NMAHLLLLARWEHTPLVMLGMVAGALLADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 120
Query: 466 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 645
HHIDPTAITRHDFIETNGDNCL+TLLPLLNMAYKFRTQSPE LEQLYPWECF+FCL+IF
Sbjct: 121 HHIDPTAITRHDFIETNGDNCLLTLLPLLNMAYKFRTQSPEVLEQLYPWECFVFCLIIFG 180
Query: 646 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 825
TFTNQIHKWSHTYFGLP WV+ LQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLE+
Sbjct: 181 TFTNQIHKWSHTYFGLPCWVVFLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLER 240
Query: 826 MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK 918
MGFWRRLEDIIQ LTGEKPRADDMKWAQKIK
Sbjct: 241 MGFWRRLEDIIQALTGEKPRADDMKWAQKIK 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,734,428
Number of extensions: 1352232
Number of successful extensions: 5382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5364
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 291
Effective length of database: 14,240,222
Effective search space: 4143904602
Effective search space used: 4143904602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000996
(1186 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854159.1| PREDICTED: similar to ubiquitin-conjugating enz... 261 1e-69
>ref|XP_854159.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2 variant 1
[Canis familiaris].
Length = 121
Score = 261 bits (666), Expect = 1e-69
Identities = 113/121 (93%), Positives = 118/121 (97%)
Frame = +1
Query: 556 MAYKFRTQSPEALEQLYPWECFIFCLVIFVTFTNQIHKWSHTYFGLPSWVILLQDWHVIL 735
MAYKFRTQSPEALEQLYPWECF+FCL+IF TFTNQIHKWSHTYFGLP WV LLQDWH+IL
Sbjct: 1 MAYKFRTQSPEALEQLYPWECFVFCLIIFGTFTNQIHKWSHTYFGLPRWVTLLQDWHIIL 60
Query: 736 PRKHHRIHHVSPHETYFCITTGWLNYPLEKMGFWRRLEDIIQGLTGEKPRADDMKWAQKI 915
PRKHHRIHHVSPHETYFCITTGWLNYPLEK+GFWRRLED+IQGLTGEKPRADDMKWAQKI
Sbjct: 61 PRKHHRIHHVSPHETYFCITTGWLNYPLEKIGFWRRLEDLIQGLTGEKPRADDMKWAQKI 120
Query: 916 K 918
K
Sbjct: 121 K 121
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,612,483
Number of extensions: 1382295
Number of successful extensions: 5593
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5582
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 290
Effective length of database: 15,374,224
Effective search space: 4458524960
Effective search space used: 4458524960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000996
(1186 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_954580.1| transmembrane protein 189 isoform 1 [Homo sapie... 548 e-156
Alignment gi|NP_001155977.1| transmembrane protein 189 isoform 2 [Homo sa... 537 e-153
Alignment gi|NP_954673.1| TMEM189-UBE2V1 fusion protein [Homo sapiens]. 468 e-132
>ref|NP_954580.1| transmembrane protein 189 isoform 1 [Homo sapiens].
Length = 270
Score = 548 bits (1412), Expect = e-156
Identities = 255/271 (94%), Positives = 262/271 (96%)
Frame = +1
Query: 106 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 285
MAGAED PGQQLELDEDEA+ CR WGAQHAGARELAALYSPGKR QEWCSVILCFSLIAH
Sbjct: 1 MAGAEDWPGQQLELDEDEASCCR-WGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAH 59
Query: 286 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 465
N+VHLLLLARWE TPLV+LGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE
Sbjct: 60 NLVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 119
Query: 466 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 645
HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRT SPEALEQLYPWECF+FCL+IF
Sbjct: 120 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFG 179
Query: 646 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 825
TFTNQIHKWSHTYFGLP WV LLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK
Sbjct: 180 TFTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 239
Query: 826 MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK 918
+GFWRRLED+IQGLTGEKPRADDMKWAQKIK
Sbjct: 240 IGFWRRLEDLIQGLTGEKPRADDMKWAQKIK 270
>ref|NP_001155977.1| transmembrane protein 189 isoform 2 [Homo sapiens].
Length = 267
Score = 537 bits (1383), Expect = e-153
Identities = 252/271 (92%), Positives = 259/271 (95%)
Frame = +1
Query: 106 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 285
MAGAED PGQQLELDEDEA+ CR WGAQHAGARELAALYSPGKR QEWCSVILCFSLIAH
Sbjct: 1 MAGAEDWPGQQLELDEDEASCCR-WGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAH 59
Query: 286 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 465
N+VHLLLLARWE TPLV+LGVVAGALIADFLSGLVHWGADTWGSVELPI AFIRPFRE
Sbjct: 60 NLVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPI---AFIRPFRE 116
Query: 466 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 645
HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRT SPEALEQLYPWECF+FCL+IF
Sbjct: 117 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFG 176
Query: 646 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 825
TFTNQIHKWSHTYFGLP WV LLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK
Sbjct: 177 TFTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 236
Query: 826 MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK 918
+GFWRRLED+IQGLTGEKPRADDMKWAQKIK
Sbjct: 237 IGFWRRLEDLIQGLTGEKPRADDMKWAQKIK 267
>ref|NP_954673.1| TMEM189-UBE2V1 fusion protein [Homo sapiens].
Length = 370
Score = 468 bits (1203), Expect = e-132
Identities = 224/256 (87%), Positives = 234/256 (91%)
Frame = +1
Query: 106 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 285
MAGAED PGQQLELDEDEA+ CR WGAQHAGARELAALYSPGKR QEWCSVILCFSLIAH
Sbjct: 1 MAGAEDWPGQQLELDEDEASCCR-WGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAH 59
Query: 286 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 465
N+VHLLLLARWE TPLV+LGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE
Sbjct: 60 NLVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 119
Query: 466 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 645
HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRT SPEALEQLYPWECF+FCL+IF
Sbjct: 120 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFG 179
Query: 646 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 825
TFTNQIHKWSHTYFGLP WV LLQDWHVILPRKHHRIHHVSPHETYFCITTG + P
Sbjct: 180 TFTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTG-VKVPRN- 237
Query: 826 MGFWRRLEDIIQGLTG 873
+R LE++ +G G
Sbjct: 238 ---FRLLEELEEGQKG 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,549,921
Number of extensions: 1345215
Number of successful extensions: 5178
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5160
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 290
Effective length of database: 14,835,944
Effective search space: 4302423760
Effective search space used: 4302423760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000996
(1186 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663513.1| transmembrane protein 189 [Mus musculus]. 542 e-154
>ref|NP_663513.1| transmembrane protein 189 [Mus musculus].
Length = 271
Score = 542 bits (1396), Expect = e-154
Identities = 249/271 (91%), Positives = 259/271 (95%)
Frame = +1
Query: 106 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 285
MAGAED PG+Q ELDEDE A RRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH
Sbjct: 1 MAGAEDAPGRQPELDEDETAEGRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 60
Query: 286 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 465
N+VHLLLLARWEHTPLV+LGVVAGAL+ADFLSGLVHWGADTWGSV+LPIVGKAFIRPFRE
Sbjct: 61 NLVHLLLLARWEHTPLVILGVVAGALVADFLSGLVHWGADTWGSVDLPIVGKAFIRPFRE 120
Query: 466 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 645
HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPE LEQLYPWECF+FCL IF
Sbjct: 121 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPETLEQLYPWECFVFCLTIFG 180
Query: 646 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 825
TFTNQIHKWSHTY GLP WV +LQDWHVILPRKHHRIHHV+PHETYFCITTGWLNYPLE
Sbjct: 181 TFTNQIHKWSHTYLGLPYWVTVLQDWHVILPRKHHRIHHVAPHETYFCITTGWLNYPLEV 240
Query: 826 MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK 918
+GFWRRLED+IQGLTGEKPRADDMKWAQKIK
Sbjct: 241 IGFWRRLEDLIQGLTGEKPRADDMKWAQKIK 271
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,006,808
Number of extensions: 1115799
Number of successful extensions: 4267
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4264
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 292
Effective length of database: 12,523,851
Effective search space: 3656964492
Effective search space used: 3656964492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000996
(1186 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192022.1| transmembrane protein 189 [Sus scrofa]. 582 e-166
>ref|NP_001192022.1| transmembrane protein 189 [Sus scrofa].
Length = 271
Score = 582 bits (1501), Expect = e-166
Identities = 271/271 (100%), Positives = 271/271 (100%)
Frame = +1
Query: 106 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 285
MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH
Sbjct: 1 MAGAEDGPGQQLELDEDEAAYCRRWGAQHAGARELAALYSPGKRFQEWCSVILCFSLIAH 60
Query: 286 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 465
NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE
Sbjct: 61 NMVHLLLLARWEHTPLVMLGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFRE 120
Query: 466 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 645
HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV
Sbjct: 121 HHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTQSPEALEQLYPWECFIFCLVIFV 180
Query: 646 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 825
TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK
Sbjct: 181 TFTNQIHKWSHTYFGLPSWVILLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEK 240
Query: 826 MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK 918
MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK
Sbjct: 241 MGFWRRLEDIIQGLTGEKPRADDMKWAQKIK 271
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,332,604
Number of extensions: 890846
Number of successful extensions: 3229
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3223
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,829,335
Effective search space: 2595824490
Effective search space used: 2595824490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000996
(1186 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 557 e-156
>Sscrofa_Chr17
|| Length = 69701581
Score = 557 bits (281), Expect = e-156
Identities = 294/297 (98%), Gaps = 1/297 (0%)
Strand = Plus / Plus
Query: 797 caggctggctcaactaccctctggagaagatgggcttctggcgacgcctagaagacatca 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57849260 caggctggctcaactaccctctggagaagatgggcttctggcgacgcctagaagacatca 57849319
Query: 857 tccaaggcctgacaggcgagaagcctcgggcggacgacatgaaatgggcacagaagatta 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57849320 tccaaggcctgacaggcgagaagcctcgggcggacgacatgaaatgggcacagaagatta 57849379
Query: 917 aataagtcgtctgtgccgccaccttattgccaaccttccccagctcccctaaaccgaagc 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57849380 aataagtcgtctgtgccgccaccttattgccaaccttccccagctcccctaaaccgaagc 57849439
Query: 977 catctgccaaattccagcctccttgcactggcccctctaggtggagaggacatctcctgg 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57849440 catctgccaaattccagcctccttgcactggcccctctaggtggagaggacatctcctgg 57849499
Query: 1037 gctgggcccaggcacccccagccca-cccttgtgacaaaaaatacttgagccactgg 1092
||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct: 57849500 gctgggcccaggcacccccagcccaccccttgtgacagagaatacttgagccactgg 57849556
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 584 cagaagccctggagcagctgtacccctgggaatgcttcatcttctgcctggtcatctttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57847133 cagaagccctggagcagctgtacccctgggaatgcttcatcttctgcctggtcatctttg 57847192
Query: 644 tcaccttcaccaatcagatccacaagtggtcgcacacatactttgggctgccgagctggg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57847193 tcaccttcaccaatcagatccacaagtggtcgcacacatactttgggctgccgagctggg 57847252
Query: 704 tcatcctcctgcaggactggcatgtcatcctgccccgtaaacatcatcgcatccaccatg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57847253 tcatcctcctgcaggactggcatgtcatcctgccccgtaaacatcatcgcatccaccatg 57847312
Query: 764 tctcaccccacgagacctacttctgcatcaccacagg 800
|||||||||||||||||||||||||||||||||||||
Sbjct: 57847313 tctcaccccacgagacctacttctgcatcaccacagg 57847349
Score = 319 bits (161), Expect = 2e-84
Identities = 206/228 (90%)
Strand = Plus / Plus
Query: 3 gctgggcggtgattgggcggcgtgatctcgccgcggttccgcggccctnnnnnnnnnnnn 62
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 57826799 gctgggcggtcattgggcggcgtgatctcgccgcggttccgcggccctgccgccgccgcc 57826858
Query: 63 nnnnnnnnnagcagagagcaccgggcgggccaggcgagtggccatggcgggcgcggaaga 122
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57826859 gccgccgccagcagagagcaccgggcgggccaggcgagtggccatggcgggcgcggaaga 57826918
Query: 123 cggaccgggccagcagctggagctcgacgaggacgaggcggcgtattgccggcgctgggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57826919 cggaccgggccagcagctggagctcgacgaggacgaggcggcgtattgccggcgctgggg 57826978
Query: 183 cgcgcagcatgccggggcccgcgagctggccgcgctctactcaccagg 230
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57826979 cgcgcagcatgccggggcccgcgagctggccgcgctctactcaccagg 57827026
Score = 319 bits (161), Expect = 2e-84
Identities = 206/228 (90%)
Strand = Plus / Minus
Query: 3 gctgggcggtgattgggcggcgtgatctcgccgcggttccgcggccctnnnnnnnnnnnn 62
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 58016943 gctgggcggtcattgggcggcgtgatctcgccgcggttccgcggccctgccgccgccgcc 58016884
Query: 63 nnnnnnnnnagcagagagcaccgggcgggccaggcgagtggccatggcgggcgcggaaga 122
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58016883 gccgccgccagcagagagcaccgggcgggccaggcgagtggccatggcgggcgcggaaga 58016824
Query: 123 cggaccgggccagcagctggagctcgacgaggacgaggcggcgtattgccggcgctgggg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58016823 cggaccgggccagcagctggagctcgacgaggacgaggcggcgtattgccggcgctgggg 58016764
Query: 183 cgcgcagcatgccggggcccgcgagctggccgcgctctactcaccagg 230
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58016763 cgcgcagcatgccggggcccgcgagctggccgcgctctactcaccagg 58016716
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 440 aggctttcatccgacccttccgagagcatcacatcgacccaacagccattacaaggcatg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57845357 aggctttcatccgacccttccgagagcatcacatcgacccaacagccattacaaggcatg 57845416
Query: 500 acttcatcgagaccaatggggacaactgcctggtgacgctcctgccactgttaaacatgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57845417 acttcatcgagaccaatggggacaactgcctggtgacgctcctgccactgttaaacatgg 57845476
Query: 560 cctacaagttccgcacccagagcccag 586
|||||||||||||||||||||||||||
Sbjct: 57845477 cctacaagttccgcacccagagcccag 57845503
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 227 caggcaagcgcttccaggagtggtgcagtgtgatcctctgctttagcctcatcgctcaca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57834404 caggcaagcgcttccaggagtggtgcagtgtgatcctctgctttagcctcatcgctcaca 57834463
Query: 287 acatggtccacctcctgctgctggcccgctgggagcacacgccccttgtaatgctgggtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57834464 acatggtccacctcctgctgctggcccgctgggagcacacgccccttgtaatgctgggtg 57834523
Query: 347 tcg 349
|||
Sbjct: 57834524 tcg 57834526
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 349 gttgcaggggcgctcattgctgacttcttgtctggcctggtgcactggggagccgacacc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57843849 gttgcaggggcgctcattgctgacttcttgtctggcctggtgcactggggagccgacacc 57843908
Query: 409 tggggctccgtggaactgcccattgtggggaagg 442
||||||||||||||||||||||||||||||||||
Sbjct: 57843909 tggggctccgtggaactgcccattgtggggaagg 57843942
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1141 tgagctgttctgtctgccaagcctgactctgc 1172
||||||||||||||||||||||||||||||||
Sbjct: 57849605 tgagctgttctgtctgccaagcctgactctgc 57849636
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,673,376
Number of extensions: 553
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 10
Length of query: 1186
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1165
Effective length of database: 2,808,413,156
Effective search space: 3271801326740
Effective search space used: 3271801326740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)