Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000998
(1129 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777140.1| 60S ribosomal protein L3 [Bos taurus]. 606 e-174
Alignment gi|NP_001030578.1| 60S ribosomal protein L3-like [Bos taurus]. 509 e-144
>ref|NP_777140.1| 60S ribosomal protein L3 [Bos taurus].
Length = 403
Score = 606 bits (1563), Expect(2) = e-174
Identities = 305/341 (89%), Positives = 310/341 (90%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD DGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
ME+QVNGGTVAEKLDWARERLEQQVPV+QVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEVQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Score = 23.9 bits (50), Expect(2) = e-174
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 349 KSLLVQTKRRAL 360
>ref|NP_001030578.1| 60S ribosomal protein L3-like [Bos taurus].
Length = 407
Score = 509 bits (1311), Expect = e-144
Identities = 243/342 (71%), Positives = 290/342 (84%), Gaps = 3/342 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DD S+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
RPG K++K+E VEAVTIVETPP+V+VG+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
+WHKSKKKAFTK CK+W+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
ME+Q+NGGTVAEK+ WA+ RLE+QVPV+ VF Q+E+IDVI SRWHTKKL
Sbjct: 181 MEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+IG+G ++DGK++K
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVK 300
Query: 956 NKRLPGYDLSDRASS--SGEPCHYGE-*P*LVMLKAGVVGTK 1072
N YD++D++ + G P HYGE VMLK + GTK
Sbjct: 301 NNASTSYDVTDKSITPLGGFP-HYGEVNNDFVMLKGCIAGTK 341
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,935,355
Number of extensions: 1324649
Number of successful extensions: 5619
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5602
Number of HSP's successfully gapped: 3
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000998
(1129 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531732.2| PREDICTED: similar to 60S ribosomal protein L3 ... 607 e-174
Alignment gi|XP_532246.1| PREDICTED: similar to 60S ribosomal protein L3 ... 606 e-173
Alignment gi|XP_868310.1| PREDICTED: similar to 60S ribosomal protein L3 ... 595 e-170
Alignment gi|XP_868306.1| PREDICTED: similar to 60S ribosomal protein L3 ... 571 e-163
Alignment gi|XP_868298.1| PREDICTED: similar to 60S ribosomal protein L3 ... 493 e-140
Alignment gi|XP_868296.1| PREDICTED: similar to ribosomal protein L3 isof... 485 e-137
Alignment gi|XP_859944.1| PREDICTED: similar to 60S ribosomal protein L3 ... 441 e-124
Alignment gi|XP_547185.2| PREDICTED: similar to 60S ribosomal protein L3-... 400 e-111
Alignment gi|XP_868301.1| PREDICTED: similar to 60S ribosomal protein L3 ... 356 1e-98
Alignment gi|XP_859912.1| PREDICTED: similar to ribosomal protein L3 isof... 299 1e-81
>ref|XP_531732.2| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 2 [Canis
familiaris].
Length = 403
Score = 607 bits (1565), Expect(2) = e-174
Identities = 304/341 (89%), Positives = 311/341 (91%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Score = 23.9 bits (50), Expect(2) = e-174
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 349 KSLLVQTKRRAL 360
>ref|XP_532246.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 1 [Canis
familiaris].
Length = 403
Score = 606 bits (1562), Expect(2) = e-173
Identities = 303/341 (88%), Positives = 311/341 (91%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Score = 23.9 bits (50), Expect(2) = e-173
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 349 KSLLVQTKRRAL 360
>ref|XP_868310.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 9
[Canis familiaris].
Length = 331
Score = 595 bits (1533), Expect = e-170
Identities = 289/313 (92%), Positives = 296/313 (94%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA 994
N YDLSD++
Sbjct: 301 NNASTDYDLSDKS 313
>ref|XP_868306.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 8 [Canis
familiaris].
Length = 390
Score = 571 bits (1471), Expect(2) = e-163
Identities = 290/341 (85%), Positives = 298/341 (87%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGT QQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGT-------------QQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 227
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 228 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 287
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 288 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 328
Score = 23.9 bits (50), Expect(2) = e-163
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 336 KSLLVQTKRRAL 347
>ref|XP_868298.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 6 [Canis
familiaris].
Length = 358
Score = 493 bits (1270), Expect(2) = e-140
Identities = 257/341 (75%), Positives = 265/341 (77%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQM
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMH----------- 169
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
EMIDVI SRWHTKKL
Sbjct: 170 ----------------------------------EMIDVIGVTKGKGYKGVTSRWHTKKL 195
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 196 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 255
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 256 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 296
Score = 23.9 bits (50), Expect(2) = e-140
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 304 KSLLVQTKRRAL 315
>ref|XP_868296.1| PREDICTED: similar to ribosomal protein L3 isoform 5 [Canis
familiaris].
Length = 354
Score = 485 bits (1249), Expect(2) = e-137
Identities = 257/341 (75%), Positives = 262/341 (76%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKK AHL
Sbjct: 121 NWHKSKKK-------------------------------------------------AHL 131
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 192 PRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 292
Score = 23.9 bits (50), Expect(2) = e-137
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 300 KSLLVQTKRRAL 311
>ref|XP_859944.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 8 [Canis
familiaris].
Length = 320
Score = 441 bits (1133), Expect(2) = e-124
Identities = 221/258 (85%), Positives = 228/258 (88%), Gaps = 2/258 (0%)
Frame = +2
Query: 305 MVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGK 484
MV+VGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQD+DGK
Sbjct: 1 MVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDDGK 60
Query: 485 KQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQ 664
KQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQ
Sbjct: 61 KQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQ 120
Query: 665 QVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVA 844
QVPVNQVFGQDEMIDVI SRWHTKKLPRKTHRGLRKVACIGAWHPARVA
Sbjct: 121 QVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVA 180
Query: 845 FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNKRLPGYDLSDRA-SSSGEPCHY 1021
FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN YDLSD++ + G HY
Sbjct: 181 FSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHY 240
Query: 1022 GE*P-*LVMLKAGVVGTK 1072
GE VMLK VVGTK
Sbjct: 241 GEVTNDFVMLKGCVVGTK 258
Score = 23.9 bits (50), Expect(2) = e-124
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 266 KSLLVQTKRRAL 277
>ref|XP_547185.2| PREDICTED: similar to 60S ribosomal protein L3-like [Canis
familiaris].
Length = 494
Score = 400 bits (1028), Expect = e-111
Identities = 191/281 (67%), Positives = 234/281 (83%), Gaps = 3/281 (1%)
Frame = +2
Query: 239 RPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKN 418
RP +++K+E VEAVTIVETPP+V++G+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK+
Sbjct: 149 RPQHQISKREEVEAVTIVETPPLVVIGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 208
Query: 419 WHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLM 598
WHKSKKKAFTK CKKW+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+M
Sbjct: 209 WHKSKKKAFTKACKKWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIM 268
Query: 599 EIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKLP 778
EIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q+E+IDVI SRWHTKKLP
Sbjct: 269 EIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEVIDVIAVTKGRGVKGVTSRWHTKKLP 328
Query: 779 RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN 958
RKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+IG+G +++GK++KN
Sbjct: 329 RKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEEGKVVKN 388
Query: 959 KRLPGYDLSDRASS--SGEPCHYGE-*P*LVMLKAGVVGTK 1072
YD++D++ + G P HYGE VMLK + GTK
Sbjct: 389 NAATSYDVTDKSITPLGGFP-HYGEVNNDFVMLKGCIAGTK 428
>ref|XP_868301.1| PREDICTED: similar to 60S ribosomal protein L3 (L4) isoform 7 [Canis
familiaris].
Length = 305
Score = 356 bits (913), Expect(2) = 1e-98
Identities = 180/219 (82%), Positives = 188/219 (85%), Gaps = 2/219 (0%)
Frame = +2
Query: 422 HKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLME 601
H+ KKKAFTKYCKKWQD+DGKKQLE+DF+SMKKYCQVIRVIAHTQMRLLPLRQKKAHLME
Sbjct: 25 HRGKKKAFTKYCKKWQDDDGKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLME 84
Query: 602 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKLPR 781
IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKLPR
Sbjct: 85 IQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 144
Query: 782 KTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNK 961
KTHRGLRKVACIGAWHPARVAFS+ARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN
Sbjct: 145 KTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNN 204
Query: 962 RLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 205 ASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 243
Score = 23.9 bits (50), Expect(2) = 1e-98
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 251 KSLLVQTKRRAL 262
Score = 67.8 bits (164), Expect = 2e-11
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPK 157
MSHRKFSAPRHGSLGFLPRKRSSRHRGK K+F K
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKKKAFTK 34
>ref|XP_859912.1| PREDICTED: similar to ribosomal protein L3 isoform 7 [Canis
familiaris].
Length = 251
Score = 299 bits (766), Expect(2) = 1e-81
Identities = 156/189 (82%), Positives = 159/189 (84%), Gaps = 2/189 (1%)
Frame = +2
Query: 512 MKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFG 691
MKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFG
Sbjct: 1 MKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFG 60
Query: 692 QDEMIDVIXXXXXXXXXXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQK 871
QDEMIDVI SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQK
Sbjct: 61 QDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQK 120
Query: 872 GYHHRTEINKKIYKIGQGYLIKDGKLIKNKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVM 1045
GYHHRTEINKKIYKIGQGYLIKDGKLIKN YDLSD++ + G HYGE VM
Sbjct: 121 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVM 180
Query: 1046 LKAGVVGTK 1072
LK VVGTK
Sbjct: 181 LKGCVVGTK 189
Score = 23.9 bits (50), Expect(2) = 1e-81
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 197 KSLLVQTKRRAL 208
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,962,458
Number of extensions: 1376673
Number of successful extensions: 6290
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6238
Number of HSP's successfully gapped: 32
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000998
(1129 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000958.1| 60S ribosomal protein L3 isoform a [Homo sapien... 607 e-174
Alignment gi|NP_005052.1| 60S ribosomal protein L3-like [Homo sapiens]. 505 e-143
Alignment gi|NP_001029025.1| 60S ribosomal protein L3 isoform b [Homo sap... 484 e-137
>ref|NP_000958.1| 60S ribosomal protein L3 isoform a [Homo sapiens].
Length = 403
Score = 607 bits (1565), Expect(2) = e-174
Identities = 304/341 (89%), Positives = 310/341 (90%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQDEDGKKQLE+DFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Score = 23.9 bits (50), Expect(2) = e-174
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 349 KSLLVQTKRRAL 360
>ref|NP_005052.1| 60S ribosomal protein L3-like [Homo sapiens].
Length = 407
Score = 505 bits (1300), Expect = e-143
Identities = 243/342 (71%), Positives = 288/342 (84%), Gaps = 3/342 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DD S+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
RPG K++K+E VEAVTIVETPP+V+VG+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
+WHKSKKKAFTK CK+W+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q E+IDVI SRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKI++IG+G ++DGKL+K
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
Query: 956 NKRLPGYDLSDRASS--SGEPCHYGE-*P*LVMLKAGVVGTK 1072
N YD++ ++ + G P HYGE VMLK + GTK
Sbjct: 301 NNASTSYDVTAKSITPLGGFP-HYGEVNNDFVMLKGCIAGTK 341
>ref|NP_001029025.1| 60S ribosomal protein L3 isoform b [Homo sapiens].
Length = 354
Score = 484 bits (1246), Expect(2) = e-137
Identities = 256/341 (75%), Positives = 261/341 (76%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKK AHL
Sbjct: 121 NWHKSKKK-------------------------------------------------AHL 131
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 192 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 292
Score = 23.9 bits (50), Expect(2) = e-137
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 300 KSLLVQTKRRAL 311
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,898,106
Number of extensions: 1330794
Number of successful extensions: 5422
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5391
Number of HSP's successfully gapped: 6
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000998
(1129 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038790.2| 60S ribosomal protein L3 [Mus musculus]. 602 e-172
Alignment gi|XP_001475783.2| PREDICTED: 60S ribosomal protein L3-like [Mu... 571 e-163
Alignment gi|XP_982298.1| PREDICTED: 60S ribosomal protein L3-like [Mus m... 550 e-157
Alignment gi|NP_001157417.1| ribosomal protein L3-like isoform 1 [Mus mus... 507 e-144
Alignment gi|NP_079701.1| ribosomal protein L3-like isoform 2 [Mus muscul... 217 2e-56
Alignment gi|XP_001476854.2| PREDICTED: 60S ribosomal protein L3-like, pa... 160 2e-39
>ref|NP_038790.2| 60S ribosomal protein L3 [Mus musculus].
Length = 403
Score = 602 bits (1552), Expect(2) = e-172
Identities = 299/341 (87%), Positives = 310/341 (90%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD+SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+ GKKQLE+DF+SMKKYCQVIR+IAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE +MLK VVGTK
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTK 341
Score = 23.9 bits (50), Expect(2) = e-172
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 349 KSLLVQTKRRAL 360
>ref|XP_001475783.2| PREDICTED: 60S ribosomal protein L3-like [Mus musculus].
Length = 403
Score = 571 bits (1471), Expect = e-163
Identities = 285/341 (83%), Positives = 300/341 (87%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSH KFSAPRHGSLGFLPRKRSSRH GKVKSFPKDD+SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHGKFSAPRHGSLGFLPRKRSSRHPGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGS+VNKKEVVEAVTIVE PPMV+VGIVGYVE PRGLRTFKT+FAEHIS+ECKRRFYK
Sbjct: 61 DRPGSEVNKKEVVEAVTIVENPPMVVVGIVGYVENPRGLRTFKTVFAEHISNECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+ GKKQLE+DF+SMKKYCQVIR+IAHTQM LLPL QKKAH
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMHLLPLCQKKAHF 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEI VNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIPVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYH+RTEINKKIYKI QG+LIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKKIYKICQGHLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE +MLK VVG K
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGAK 341
>ref|XP_982298.1| PREDICTED: 60S ribosomal protein L3-like [Mus musculus].
Length = 385
Score = 550 bits (1418), Expect(2) = e-157
Identities = 279/341 (81%), Positives = 290/341 (85%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDD+SKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVE VTIVETPPMV+VGIVGYVETPRGLRTFKT+FAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEVVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQD+ GKKQLE+DF+SMKKYCQVIR+IAHTQMRLLPLRQKK
Sbjct: 121 NWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLPLRQKKG-- 178
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
ARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 179 ----------------ARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 222
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 223 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 282
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE +MLK VVGTK
Sbjct: 283 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTK 323
Score = 23.9 bits (50), Expect(2) = e-157
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 331 KSLLVQTKRRAL 342
>ref|NP_001157417.1| ribosomal protein L3-like isoform 1 [Mus musculus].
Length = 407
Score = 507 bits (1305), Expect = e-144
Identities = 241/342 (70%), Positives = 288/342 (84%), Gaps = 3/342 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHG LGFLP KRS RHRGKVKS+P+DD S+PVHLTAFLGYKAGMTH +REV
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
RPG K++K+E VEAVTIVETPP+V+VG+VGYV TPRGLR+FKTIFAEH+SDEC+RRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
+WHKSKKKAFTK CK+W+D DGKKQL++DF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 DWHKSKKKAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQ+NGGTVAEK+ W + R+E+QVPV+ VF Q E+IDVI SRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+IG+G ++DGK+++
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKMVR 300
Query: 956 NKRLPGYDLSDRASS--SGEPCHYGE-*P*LVMLKAGVVGTK 1072
N YD++D++ + G P HYGE +MLK + GTK
Sbjct: 301 NNASTSYDVTDKSITPLGGFP-HYGEVNNDFIMLKGCIAGTK 341
>ref|NP_079701.1| ribosomal protein L3-like isoform 2 [Mus musculus].
Length = 240
Score = 217 bits (552), Expect = 2e-56
Identities = 107/175 (61%), Positives = 133/175 (76%), Gaps = 3/175 (1%)
Frame = +2
Query: 557 MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXX 736
M+LLP RQKKAH+MEIQ+NGGTVAEK+ W + R+E+QVPV+ VF Q E+IDVI
Sbjct: 1 MKLLPFRQKKAHIMEIQLNGGTVAEKVAWVQARMEKQVPVHSVFSQSEVIDVIAVTKGRG 60
Query: 737 XXXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKI 916
SRWHTKKLPRKTH+GLRKVACIGAWHPARV S+ARAGQKGYHHRTE+NKKIY+I
Sbjct: 61 VKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRI 120
Query: 917 GQGYLIKDGKLIKNKRLPGYDLSDRASS--SGEPCHYGE-*P*LVMLKAGVVGTK 1072
G+G ++DGK+++N YD++D++ + G P HYGE +MLK + GTK
Sbjct: 121 GRGLHMEDGKMVRNNASTSYDVTDKSITPLGGFP-HYGEVNNDFIMLKGCIAGTK 174
>ref|XP_001476854.2| PREDICTED: 60S ribosomal protein L3-like, partial [Mus musculus].
Length = 180
Score = 160 bits (404), Expect = 2e-39
Identities = 83/109 (76%), Positives = 89/109 (81%), Gaps = 2/109 (1%)
Frame = +2
Query: 752 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYL 931
SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYH+RTEINKKIYKI QG+L
Sbjct: 10 SRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHYRTEINKKIYKICQGHL 69
Query: 932 IKDGKLIKNKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
IKDGKLIKN YDLSD++ + G HYGE +MLK VVG K
Sbjct: 70 IKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGAK 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,611,274
Number of extensions: 1100119
Number of successful extensions: 4679
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4624
Number of HSP's successfully gapped: 8
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000998
(1129 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126059.2| PREDICTED: 60S ribosomal protein L3 [Sus scr... 611 e-175
>ref|XP_003126059.2| PREDICTED: 60S ribosomal protein L3 [Sus scrofa].
Length = 403
Score = 611 bits (1575), Expect(2) = e-175
Identities = 308/341 (90%), Positives = 311/341 (91%), Gaps = 2/341 (0%)
Frame = +2
Query: 56 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 235
MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREV 60
Query: 236 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 415
DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVIVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYK 120
Query: 416 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 595
NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLERDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 596 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIXXXXXXXXXXXXSRWHTKKL 775
MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVI SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 776 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 955
PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300
Query: 956 NKRLPGYDLSDRA-SSSGEPCHYGE*P-*LVMLKAGVVGTK 1072
N YDLSD++ + G HYGE VMLK VVGTK
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTK 341
Score = 23.9 bits (50), Expect(2) = e-175
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +3
Query: 1092 QSLLVQTKRRAL 1127
+SLLVQTKRRAL
Sbjct: 349 KSLLVQTKRRAL 360
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,038,271
Number of extensions: 858209
Number of successful extensions: 3618
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000998
(1129 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 385 e-104
>Sscrofa_Chr05
|| Length = 111506441
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 58 gtctcacaggaagttctccgctcccaggcacgggtccctgggcttcctgcctcggaagcg 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217938 gtctcacaggaagttctccgctcccaggcacgggtccctgggcttcctgcctcggaagcg 6217997
Query: 118 tagcagccggcaccgcgggaaggtgaagagtttccccaaggatgactcttccaagcccgt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6217998 tagcagccggcaccgcgggaaggtgaagagtttccccaaggatgactcttccaagcccgt 6218057
Query: 178 gcacctcaccgccttccttggctacaaggctggcatgacccacattgtgagggaggtcga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6218058 gcacctcaccgccttccttggctacaaggctggcatgacccacattgtgagggaggtcga 6218117
Query: 238 taggcctgggtcca 251
||||||||||||||
Sbjct: 6218118 taggcctgggtcca 6218131
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 555 agatgcgcctgcttcctctccgccagaagaaggcccacctcatggagatccaggtgaacg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221539 agatgcgcctgcttcctctccgccagaagaaggcccacctcatggagatccaggtgaacg 6221598
Query: 615 gaggcacagtggctgaaaaactggactgggcccgggagaggctagagcagcaggtccctg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221599 gaggcacagtggctgaaaaactggactgggcccgggagaggctagagcagcaggtccctg 6221658
Query: 675 tgaaccaggtgtttgggcaggatgagatgattgatgtcattggcgtgaccaagggcaagg 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6221659 tgaaccaggtgtttgggcaggatgagatgattgatgtcattggcgtgaccaagggcaagg 6221718
Query: 735 gctacaaagg 744
||||||||||
Sbjct: 6221719 gctacaaagg 6221728
Score = 337 bits (170), Expect = 8e-90
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 252 aggtgaacaagaaggaagttgtggaggctgtgactattgtggagacgccacccatggtga 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219482 aggtgaacaagaaggaagttgtggaggctgtgactattgtggagacgccacccatggtga 6219541
Query: 312 ttgtgggcatcgtgggctatgtggaaacccctcggggcctccggacctttaagaccatct 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219542 ttgtgggcatcgtgggctatgtggaaacccctcggggcctccggacctttaagaccatct 6219601
Query: 372 tcgcggagcacatcagcgatgagtgcaagaggcgcttctataagaactgg 421
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219602 tcgcggagcacatcagcgatgagtgcaagaggcgcttctataagaactgg 6219651
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 742 aggggtcaccagccgttggcataccaagaagctgccccggaagacccaccgggggctccg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222097 aggggtcaccagccgttggcataccaagaagctgccccggaagacccaccgggggctccg 6222156
Query: 802 caaggttgcctgtattggcgcgtggcatcctgcgcgtgtggccttctccgtggcccgggc 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222157 caaggttgcctgtattggcgcgtggcatcctgcgcgtgtggccttctccgtggcccgggc 6222216
Query: 862 tgggcagaaaggctaccatcaccgcacagagatcaacaagaag 904
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222217 tgggcagaaaggctaccatcaccgcacagagatcaacaagaag 6222259
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 420 ggcataaatctaagaagaaggccttcaccaaatactgcaagaagtggcaggatgaagatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6220149 ggcataaatctaagaagaaggccttcaccaaatactgcaagaagtggcaggatgaagatg 6220208
Query: 480 gcaagaagcagttggagagggacttcagtagcatgaagaagtactgccaggtcatccggg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6220209 gcaagaagcagttggagagggacttcagtagcatgaagaagtactgccaggtcatccggg 6220268
Query: 540 tcattgcccacacccag 556
|||||||||||||||||
Sbjct: 6220269 tcattgcccacacccag 6220285
Score = 143 bits (72), Expect = 2e-31
Identities = 106/112 (94%), Gaps = 4/112 (3%)
Strand = Plus / Plus
Query: 902 aagatctacaagatcggccagggctacctcatcaaggacggcaagctgatcaagaacaaa 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6222657 aagatctacaagatcggccagggctacctcatcaaggacggcaagctgatcaagaac-aa 6222715
Query: 962 cgcctccccgga-tacgatctctccgac-agagcatc-atcctctggggagc 1010
||||||| |||| ||||||||||||||| |||||||| ||||||||| ||||
Sbjct: 6222716 cgcctccacggattacgatctctccgacaagagcatcaatcctctggtgagc 6222767
Score = 91.7 bits (46), Expect = 8e-16
Identities = 56/58 (96%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1 atatatcgcacgcctagaccagcccggcgctctatcggcagcttccgaccgcgggatg 58
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 6216929 atatatcgcacgcctagaccagcccgac-ctctatcggcagcttccgaccgcgggatg 6216985
Score = 71.9 bits (36), Expect = 7e-10
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1090 cgcagtccttgctggtacaaaccaaacgacgggccctgga 1129
||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6223562 cgcagtccttgctggtacagaccaaacgacgggccctgga 6223601
Score = 69.9 bits (35), Expect = 3e-09
Identities = 77/83 (92%), Gaps = 6/83 (7%)
Strand = Plus / Plus
Query: 1016 cactatggtgag-tgacca-tgactt-gtcatgctcaa-ggctggcgtcgtggggaccaa 1071
|||||||||||| |||||| |||||| ||||||||||| ||||| |||||||||||||||
Sbjct: 6223163 cactatggtgaggtgaccaatgactttgtcatgctcaaaggctg-cgtcgtggggaccaa 6223221
Query: 1072 -aagcgagtgctcacccttcgca 1093
||||||||||||||||||||||
Sbjct: 6223222 gaagcgagtgctcacccttcgca 6223244
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,043,762
Number of extensions: 130
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 9
Length of query: 1129
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1108
Effective length of database: 2,808,413,156
Effective search space: 3111721776848
Effective search space used: 3111721776848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)