Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001015
(1000 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069695.1| lanC-like protein 1 [Bos taurus]. 369 e-106
Alignment gi|NP_001095726.1| lanC-like protein 2 [Bos taurus]. 182 1e-48
Alignment gi|NP_001193337.1| lanC-like protein 3 [Bos taurus]. 50 3e-06
>ref|NP_001069695.1| lanC-like protein 1 [Bos taurus].
Length = 399
Score = 369 bits (948), Expect(2) = e-106
Identities = 179/204 (87%), Positives = 189/204 (92%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAEGYFDSAGRLTPEFSQR+NNKIRELLQQMERGLKSADPRD T
Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDSAGRLTPEFSQRLNNKIRELLQQMERGLKSADPRDST 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHLYDVFGDP YLQMAHGY KQSLN L+K SITFLCGD GPLAVAAVV
Sbjct: 61 VYTGWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKHSITFLCGDGGPLAVAAVV 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
H KMNNEKQAE+CITRLIHLNKID HAP+EMLYGRMGYI ALLFVNKNFG EKIP+SHIQ
Sbjct: 121 HHKMNNEKQAEECITRLIHLNKIDRHAPSEMLYGRMGYISALLFVNKNFGEEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICET+LTSGE+LARK+ F + P
Sbjct: 181 QICETVLTSGEDLARKRRFTGETP 204
Score = 33.5 bits (75), Expect(2) = e-106
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_001095726.1| lanC-like protein 2 [Bos taurus].
Length = 433
Score = 182 bits (461), Expect(2) = 1e-48
Identities = 94/226 (41%), Positives = 139/226 (61%), Gaps = 22/226 (9%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGY------------------FDSAGRLTPEFSQRVNNKIRE 443
M RAFPNP+ D+ + F S G++ F++R+ KI++
Sbjct: 1 MEDRAFPNPFPDYEAAAERQAEEPPCSRTPLSPEELGLPFHSDGKIINNFTRRIQTKIKD 60
Query: 444 LLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKR 623
LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D +YL + Y K++L L R
Sbjct: 61 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQSYLLRSLDYVKRTLRNLNGR 120
Query: 624 SITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRMGY 791
+TFLCGDAGPLAV AVV+ K+ ++ ++++CIT+L+ L + D P+E+LYGR GY
Sbjct: 121 RVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYGRAGY 180
Query: 792 IYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKKNFQKKLP 929
+YALL+VN G + S I+++ I+ SG+ L++++ ++ P
Sbjct: 181 LYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCP 226
Score = 30.4 bits (67), Expect(2) = 1e-48
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
+K YVGAA G+AGIYY L
Sbjct: 233 RKQYVGAAHGMAGIYYML 250
>ref|NP_001193337.1| lanC-like protein 3 [Bos taurus].
Length = 420
Score = 50.1 bits (118), Expect = 3e-06
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 20/218 (9%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIREL--LQQMERGLKSADPR 488
M +R F N + D+ SL G + A + P + + ++EL L G +A
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA--VAPLVTATIERILQELPPLGGGPEGRGAAAAA 58
Query: 489 DGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLNCLTKRS----------I 629
+ + G+A + LY V P + Y AK+ ++ +
Sbjct: 59 SSCQWGLYGGVAGVAYMLYHVSQSPLFAGARERYLRLAKRLIDACARAEEWGEPDADTRA 118
Query: 630 TFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEMLYGRMGYI 794
FL G AG AVA +V+ + + + + +E+ GR GY+
Sbjct: 119 AFLLGGAGVYAVATLVYHALGRPDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYL 178
Query: 795 YALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKK 908
A L + + E + + I+ IC+ IL SG+ A KK
Sbjct: 179 CAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKK 216
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,630,447
Number of extensions: 1195010
Number of successful extensions: 4156
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4135
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001015
(1000 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 380 e-108
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 172 9e-46
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 52 7e-07
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris].
Length = 399
Score = 380 bits (975), Expect(2) = e-108
Identities = 182/204 (89%), Positives = 191/204 (93%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYADFNKSLAE YFD AGRLTPEFSQR+NNKIRELLQQMERGLKSADPRD T
Sbjct: 1 MAQRAFPNPYADFNKSLAESYFDCAGRLTPEFSQRLNNKIRELLQQMERGLKSADPRDST 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIA+LYLHLYDVFGDPAYLQMAHGY KQSLN LTKRSITFLCGDAGPLA+ AVV
Sbjct: 61 VYTGWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKRSITFLCGDAGPLAIGAVV 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMNNEKQAEDCITRLIHLNKID HAPNEMLYGRMGY+YALLFVNKNFGVEKIP+SHIQ
Sbjct: 121 YHKMNNEKQAEDCITRLIHLNKIDHHAPNEMLYGRMGYVYALLFVNKNFGVEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICE +LTSGENLA+K+NF K P
Sbjct: 181 QICEAVLTSGENLAQKRNFTAKTP 204
Score = 30.4 bits (67), Expect(2) = e-108
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYY L
Sbjct: 211 QEYYVGAAHGLAGIYYLL 228
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein) [Canis familiaris].
Length = 452
Score = 172 bits (436), Expect(2) = 9e-46
Identities = 84/182 (46%), Positives = 124/182 (68%), Gaps = 4/182 (2%)
Frame = +3
Query: 396 RLTPEFSQRVNNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQ 575
R+ F++R+ KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D YL
Sbjct: 67 RIVQNFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLL 126
Query: 576 MAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI--- 746
+ Y K++L L R +TFLCGDAGPLAV AVV+ K+ ++ ++++CIT+L+ L +
Sbjct: 127 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVC 186
Query: 747 -DPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKKNFQKK 923
D P+E+LYGR GY+YALL++N G + S I+++ I+ SG+ L+R++ ++
Sbjct: 187 RDSDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAER 246
Query: 924 LP 929
P
Sbjct: 247 CP 248
Score = 30.4 bits (67), Expect(2) = 9e-46
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
+K YVGAA G+AGIYY L
Sbjct: 255 RKQYVGAAHGMAGIYYML 272
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like
3 [Canis familiaris].
Length = 420
Score = 52.4 bits (124), Expect = 7e-07
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 23/221 (10%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQ-----QMERGLKSA 479
M +R F N + D+ SL G + A + P + + ++EL + +A
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA--VAPLVTATIERILQELPPLGGGAEARGAAAAA 58
Query: 480 DPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLNCLTKRS-------- 626
G Y G AG+A + LY V P + Y AK+ ++ +
Sbjct: 59 SSCQGGLYGGVAGVAYM---LYHVSQSPLFAGARERYLRSAKRLIDACARAEEWGEPDAD 115
Query: 627 --ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEMLYGRM 785
FL G AG AVA +V+ + + + + +E+ GR
Sbjct: 116 TRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRA 175
Query: 786 GYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKK 908
GY+ A L + + E + + I+ IC+ IL SG+ A KK
Sbjct: 176 GYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKK 216
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,344,293
Number of extensions: 1234353
Number of successful extensions: 4569
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4554
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001015
(1000 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006046.1| lanC-like protein 1 [Homo sapiens]. 392 e-112
Alignment gi|NP_001130047.1| lanC-like protein 1 [Homo sapiens]. 392 e-112
Alignment gi|NP_001130046.1| lanC-like protein 1 [Homo sapiens]. 392 e-112
Alignment gi|NP_061167.1| lanC-like protein 2 [Homo sapiens]. 175 1e-46
Alignment gi|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens]. 53 5e-07
Alignment gi|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens]. 53 5e-07
>ref|NP_006046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 392 bits (1007), Expect(2) = e-112
Identities = 188/204 (92%), Positives = 197/204 (96%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAEGYFD+AGRLTPEFSQR+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHLYDVFGDPAYLQ+AHGY KQSLNCLTKRSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGR+GYIYALLFVNKNFGVEKIP+SHIQ
Sbjct: 121 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICETILTSGENLARK+NF K P
Sbjct: 181 QICETILTSGENLARKRNFTAKSP 204
Score = 33.5 bits (75), Expect(2) = e-112
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_001130047.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 392 bits (1007), Expect(2) = e-112
Identities = 188/204 (92%), Positives = 197/204 (96%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAEGYFD+AGRLTPEFSQR+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHLYDVFGDPAYLQ+AHGY KQSLNCLTKRSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGR+GYIYALLFVNKNFGVEKIP+SHIQ
Sbjct: 121 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICETILTSGENLARK+NF K P
Sbjct: 181 QICETILTSGENLARKRNFTAKSP 204
Score = 33.5 bits (75), Expect(2) = e-112
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_001130046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 392 bits (1007), Expect(2) = e-112
Identities = 188/204 (92%), Positives = 197/204 (96%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAEGYFD+AGRLTPEFSQR+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHLYDVFGDPAYLQ+AHGY KQSLNCLTKRSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGR+GYIYALLFVNKNFGVEKIP+SHIQ
Sbjct: 121 YHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICETILTSGENLARK+NF K P
Sbjct: 181 QICETILTSGENLARKRNFTAKSP 204
Score = 33.5 bits (75), Expect(2) = e-112
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_061167.1| lanC-like protein 2 [Homo sapiens].
Length = 450
Score = 175 bits (444), Expect(2) = 1e-46
Identities = 92/231 (39%), Positives = 139/231 (60%), Gaps = 27/231 (11%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKS----LAEGYFDSAGRLTP-------------------EFSQRVN 428
M +RAF NP+ D+ + LA G + G + P F +R+
Sbjct: 19 MEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPGLPFHQDGKIIHNFIRRIQ 78
Query: 429 NKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLN 608
KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D YL + Y K++L
Sbjct: 79 TKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLLRSLDYVKRTLR 138
Query: 609 CLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLY 776
L R +TFLCGDAGPLAV AV++ K+ ++ ++++C+T+L+ L + + P+E+LY
Sbjct: 139 NLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPDELLY 198
Query: 777 GRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKKNFQKKLP 929
GR GY+YALL++N G + S I+++ I+ SG+ L+R++ ++ P
Sbjct: 199 GRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCP 249
Score = 30.4 bits (67), Expect(2) = 1e-46
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
+K YVGAA G+AGIYY L
Sbjct: 256 RKQYVGAAHGMAGIYYML 273
>ref|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens].
Length = 420
Score = 52.8 bits (125), Expect = 5e-07
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDG 494
M +R F N + D+ SL G + A + V I +LQ++ A+ R
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA------VAPLVTATIERILQELPPLGGGAEARGA 54
Query: 495 TA---------YTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLNCLTKRS---- 626
TA Y G AG+A + LY V P + Y AK+ ++ +
Sbjct: 55 TAGASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKRLIDACARAEEWGE 111
Query: 627 ------ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEML 773
FL G AG AVA +V+ + + + + +E+
Sbjct: 112 PDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELF 171
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKK 908
GR GY+ A L + + E + + I+ IC+ IL SG+ A KK
Sbjct: 172 VGRAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKK 216
>ref|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens].
Length = 388
Score = 52.8 bits (125), Expect = 5e-07
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 27/225 (12%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDG 494
M +R F N + D+ SL G + A + V I +LQ++ A+ R
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA------VAPLVTATIERILQELPPLGGGAEARGA 54
Query: 495 TA---------YTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLNCLTKRS---- 626
TA Y G AG+A + LY V P + Y AK+ ++ +
Sbjct: 55 TAGASACQGGLYGGVAGVAYM---LYHVSQSPLFATARERYLRSAKRLIDACARAEEWGE 111
Query: 627 ------ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEML 773
FL G AG AVA +V+ + + + + +E+
Sbjct: 112 PDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELF 171
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKK 908
GR GY+ A L + + E + + I+ IC+ IL SG+ A KK
Sbjct: 172 VGRAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKK 216
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,515,460
Number of extensions: 1201544
Number of successful extensions: 4200
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4181
Number of HSP's successfully gapped: 10
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001015
(1000 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177913.1| lanC-like protein 1 [Mus musculus]. 365 e-104
Alignment gi|NP_067270.1| lanC-like protein 1 [Mus musculus]. 365 e-104
Alignment gi|NP_001177914.1| lanC-like protein 1 [Mus musculus]. 365 e-104
Alignment gi|NP_598498.1| lanC-like protein 2 [Mus musculus]. 186 4e-50
Alignment gi|NP_775590.2| lanC-like protein 3 [Mus musculus]. 53 3e-07
>ref|NP_001177913.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 365 bits (938), Expect(2) = e-104
Identities = 174/204 (85%), Positives = 189/204 (92%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAE YFDS GRLTPEFS R+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAENYFDSTGRLTPEFSHRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHL++VFGDPAYLQMAH Y KQSLNCL++RSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMN+EKQAE+CITRLIHLNKIDPH PNEMLYGR+GYI+ALLFVNKNFG EKIP+SHIQ
Sbjct: 121 YHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICE ILTSGENL+RK+N K P
Sbjct: 181 QICENILTSGENLSRKRNLAAKSP 204
Score = 33.5 bits (75), Expect(2) = e-104
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_067270.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 365 bits (938), Expect(2) = e-104
Identities = 174/204 (85%), Positives = 189/204 (92%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAE YFDS GRLTPEFS R+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAENYFDSTGRLTPEFSHRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHL++VFGDPAYLQMAH Y KQSLNCL++RSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMN+EKQAE+CITRLIHLNKIDPH PNEMLYGR+GYI+ALLFVNKNFG EKIP+SHIQ
Sbjct: 121 YHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICE ILTSGENL+RK+N K P
Sbjct: 181 QICENILTSGENLSRKRNLAAKSP 204
Score = 33.5 bits (75), Expect(2) = e-104
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_001177914.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 365 bits (938), Expect(2) = e-104
Identities = 174/204 (85%), Positives = 189/204 (92%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDGT 497
MAQRAFPNPYAD+NKSLAE YFDS GRLTPEFS R+ NKIRELLQQMERGLKSADPRDGT
Sbjct: 1 MAQRAFPNPYADYNKSLAENYFDSTGRLTPEFSHRLTNKIRELLQQMERGLKSADPRDGT 60
Query: 498 AYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVV 677
YTGWAGIAVLYLHL++VFGDPAYLQMAH Y KQSLNCL++RSITFLCGDAGPLAVAAV+
Sbjct: 61 GYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAVAAVL 120
Query: 678 HDKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQ 857
+ KMN+EKQAE+CITRLIHLNKIDPH PNEMLYGR+GYI+ALLFVNKNFG EKIP+SHIQ
Sbjct: 121 YHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQSHIQ 180
Query: 858 QICETILTSGENLARKKNFQKKLP 929
QICE ILTSGENL+RK+N K P
Sbjct: 181 QICENILTSGENLSRKRNLAAKSP 204
Score = 33.5 bits (75), Expect(2) = e-104
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 211 QEYYVGAAHGLAGIYYYL 228
>ref|NP_598498.1| lanC-like protein 2 [Mus musculus].
Length = 450
Score = 186 bits (473), Expect(2) = 4e-50
Identities = 94/232 (40%), Positives = 145/232 (62%), Gaps = 28/232 (12%)
Frame = +3
Query: 318 MAQRAFPNPYADFNKS-----LAEGYFDSAGR-------------------LTPEFSQRV 425
M +R+FPNP+ D+ + LA G + GR + P F +R+
Sbjct: 18 MEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDPGLPFHPNGKIVPNFIKRI 77
Query: 426 NNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGYAKQSL 605
KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V GD YL + Y K++L
Sbjct: 78 QTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTGDQTYLLRSLDYVKRTL 137
Query: 606 NCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHAPNEML 773
L+ R +TFLCGDAGPLAV AV++ K+ +E ++++CIT+L+ +++ + P+E+L
Sbjct: 138 RNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELL 197
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKKNFQKKLP 929
YGR GY+YALL++N G + + I+++ I+ SG++L+R++ ++ P
Sbjct: 198 YGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCP 249
Score = 30.4 bits (67), Expect(2) = 4e-50
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
+K YVGAA G+AGIYY L
Sbjct: 256 RKQYVGAAHGMAGIYYML 273
>ref|NP_775590.2| lanC-like protein 3 [Mus musculus].
Length = 420
Score = 53.1 bits (126), Expect = 3e-07
Identities = 57/225 (25%), Positives = 90/225 (40%), Gaps = 27/225 (12%)
Frame = +3
Query: 315 MMAQRAFPNPYADFNKSLAEGYFDSAGRLTPEFSQRVNNKIRELLQQMERGLKSADPRDG 494
M +R F N + D+ SL G + A + V + I +LQ++ A+ R
Sbjct: 1 MDTKRCFANRFDDYQGSLLAGQCEEA------VAPLVTSTIERILQELPPLGGGAEARGA 54
Query: 495 TA---------YTGWAGIAVLYLHLYDVFGDPAYLQMAHGY---AKQSLN-CLTKRS--- 626
T Y+G AG+A + LY V P + Y AK+ ++ CL
Sbjct: 55 TGAGSSCQGGLYSGVAGVAYM---LYHVSQSPLFAAARERYLRFAKRLIDACLRAEEWGE 111
Query: 627 ------ITFLCGDAGPLAVAAVVHDKMNNEKQAED-----CITRLIHLNKIDPHAPNEML 773
FL G AG AVA +V+ + + + + +E+
Sbjct: 112 TDADTRAAFLLGGAGVYAVATLVYHALGRPDYVQPLGKFRALCAVCAPVSFLDCGSDELF 171
Query: 774 YGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKK 908
GR GY+ A L + + E + + I+ IC+ IL SG+ A KK
Sbjct: 172 VGRAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKK 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,107,942
Number of extensions: 996764
Number of successful extensions: 3272
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3253
Number of HSP's successfully gapped: 9
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001015
(1000 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926406.3| PREDICTED: lanC-like protein 1 [Sus scrofa]. 466 e-135
Alignment gi|XP_003361509.1| PREDICTED: lanC-like protein 2-like, partial... 171 2e-45
>ref|XP_001926406.3| PREDICTED: lanC-like protein 1 [Sus scrofa].
Length = 432
Score = 466 bits (1198), Expect(3) = e-135
Identities = 227/238 (95%), Positives = 230/238 (96%)
Frame = +3
Query: 216 MFPGRCPPPALLGRGPHLNVDSLFPLFCRLVSGMMAQRAFPNPYADFNKSLAEGYFDSAG 395
MFPGRCPPPALLGRGPHLNVDSLFPLFCRLVSGMMAQRAFPNPYADFNKSLAEGYFDSAG
Sbjct: 1 MFPGRCPPPALLGRGPHLNVDSLFPLFCRLVSGMMAQRAFPNPYADFNKSLAEGYFDSAG 60
Query: 396 RLTPEFSQRVNNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQ 575
RLTPEFSQRVNNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQ
Sbjct: 61 RLTPEFSQRVNNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQ 120
Query: 576 MAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKIDPH 755
MAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVVHDKMNNEK I RLIHLNKIDPH
Sbjct: 121 MAHGYAKQSLNCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKHV-IFIPRLIHLNKIDPH 179
Query: 756 APNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKKNFQKKLP 929
APNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQQICET+LTSGENLARK+NF +K P
Sbjct: 180 APNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQQICETVLTSGENLARKRNFTEKTP 237
Score = 33.5 bits (75), Expect(3) = e-135
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
Q+ YVGAA GLAGIYYYL
Sbjct: 244 QEYYVGAAHGLAGIYYYL 261
Score = 23.5 bits (49), Expect(3) = e-135
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 902 KKKLPEKTPLMYE 940
K+ EKTPLMYE
Sbjct: 229 KRNFTEKTPLMYE 241
>ref|XP_003361509.1| PREDICTED: lanC-like protein 2-like, partial [Sus scrofa].
Length = 626
Score = 171 bits (432), Expect(2) = 2e-45
Identities = 82/177 (46%), Positives = 124/177 (70%), Gaps = 4/177 (2%)
Frame = +3
Query: 411 FSQRVNNKIRELLQQMERGLKSADPRDGTAYTGWAGIAVLYLHLYDVFGDPAYLQMAHGY 590
F++R+ +KI++LLQQME GLK+ADP D +AYTGW GIA+LYL LY V D YL + Y
Sbjct: 211 FTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDY 270
Query: 591 AKQSLNCLTKRSITFLCGDAGPLAVAAVVHDKMNNEKQAEDCITRLIHLNKI----DPHA 758
K++L L R +TFLCGDAGPLAV AVV+ K+ ++ ++++CIT+L+ L + D
Sbjct: 271 VKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL 330
Query: 759 PNEMLYGRMGYIYALLFVNKNFGVEKIPRSHIQQICETILTSGENLARKKNFQKKLP 929
P+E+L+GR GY+YALL+VN G + S I+++ + I+ SG+ L++++ ++ P
Sbjct: 331 PDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCP 387
Score = 30.4 bits (67), Expect(2) = 2e-45
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 946 QKNYVGAALGLAGIYYYL 999
+K YVGAA G+AGIYY L
Sbjct: 394 RKQYVGAAHGMAGIYYML 411
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,195,495
Number of extensions: 773288
Number of successful extensions: 2790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2774
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001015
(1000 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118435.1| Sus scrofa unplaced genomic scaffold ChrUScaf318 789 0.0
Sscrofa_Chr15 767 0.0
Sscrofa_Chr10 549 e-153
>gb|JH118435.1| Sus scrofa unplaced genomic scaffold ChrUScaf318
Length = 110635
Score = 789 bits (398), Expect = 0.0
Identities = 398/398 (100%)
Strand = Plus / Minus
Query: 1 gagacctggcagggatttgggacgctggacaggcagtttcttcacgtagccagagtgcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56358 gagacctggcagggatttgggacgctggacaggcagtttcttcacgtagccagagtgcga 56299
Query: 61 acgtggggtgcaaaacgggtcctttgcggcgcggtgggttcggggccctggcagccgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56298 acgtggggtgcaaaacgggtcctttgcggcgcggtgggttcggggccctggcagccgttt 56239
Query: 121 tgcggaggtgccacgccctaggggctgggccgtggtgggcccggggtctactccgaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56238 tgcggaggtgccacgccctaggggctgggccgtggtgggcccggggtctactccgaccac 56179
Query: 181 ctggaccgcgaagtggcctgggaactggaaggaagatgttccccgggcgctgtccgccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56178 ctggaccgcgaagtggcctgggaactggaaggaagatgttccccgggcgctgtccgccgc 56119
Query: 241 ccgcgctactgggccgaggtccccatctcaacgtagattctctttttcccctcttctgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56118 ccgcgctactgggccgaggtccccatctcaacgtagattctctttttcccctcttctgca 56059
Query: 301 ggctcgtttctggcatgatggcgcaaagggccttcccgaatccttatgcagattttaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56058 ggctcgtttctggcatgatggcgcaaagggccttcccgaatccttatgcagattttaaca 55999
Query: 361 aatccctggccgaaggctactttgattctgctgggagg 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 55998 aatccctggccgaaggctactttgattctgctgggagg 55961
Score = 377 bits (190), Expect = e-102
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 514 caggtatcgctgtgctttacttacacctctatgatgtgtttggggaccctgcctacctgc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36194 caggtatcgctgtgctttacttacacctctatgatgtgtttggggaccctgcctacctgc 36135
Query: 574 agatggcacatggctatgcaaagcaaagtctgaactgtttgaccaagcgttccatcacct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36134 agatggcacatggctatgcaaagcaaagtctgaactgtttgaccaagcgttccatcacct 36075
Query: 634 tcctgtgtggtgatgcgggccccctggcagtggctgctgtggtgcatgacaagatgaaca 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36074 tcctgtgtggtgatgcgggccccctggcagtggctgctgtggtgcatgacaagatgaaca 36015
Query: 694 atgagaagca 703
||||||||||
Sbjct: 36014 atgagaagca 36005
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 724 ggctaattcacctaaataagattgacccgcatgctccaaatgaaatgctgtatggacgaa 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30714 ggctaattcacctaaataagattgacccgcatgctccaaatgaaatgctgtatggacgaa 30655
Query: 784 tgggctacatctatgctcttctctttgtgaataagaactttggagtagaaaagattcctc 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30654 tgggctacatctatgctcttctctttgtgaataagaactttggagtagaaaagattcctc 30595
Query: 844 gaagccatattcagca 859
||||||||||||||||
Sbjct: 30594 gaagccatattcagca 30579
Score = 226 bits (114), Expect = 2e-56
Identities = 120/122 (98%)
Strand = Plus / Minus
Query: 398 gctcactcctgagttctcacaacgtgtgaacaataagattcgagagctgcttcagcaaat 457
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 52551 gctcactcctgagttctcacaacgcgtgaacaataagattcgagagcttcttcagcaaat 52492
Query: 458 ggagagaggcctaaaatcagcagaccctcgcgatggcactgcttacactggatgggcagg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52491 ggagagaggcctaaaatcagcagaccctcgcgatggcactgcttacactggatgggcagg 52432
Query: 518 ta 519
||
Sbjct: 52431 ta 52430
Score = 91.7 bits (46), Expect = 7e-16
Identities = 116/142 (81%), Gaps = 2/142 (1%)
Strand = Plus / Minus
Query: 861 atttgtgaaacaatccttacctctggagaaaacctagctagnnnnnnnnncttc-cagaa 919
|||||||||||| || | ||||||||||||||||||||||| |||| |||||
Sbjct: 29949 atttgtgaaacagtcttaacctctggagaaaacctagctagaaaaagaaacttcacagaa 29890
Query: 920 aaaactcccctgatgtatgaagggaacnnnnnnn-ttatgtgggggctgctctgggcctg 978
|||||||| |||||||||||| || || ||||||||||||||||| ||||||
Sbjct: 29889 aaaactccactgatgtatgaatggtaccaagaatattatgtgggggctgctcatggcctg 29830
Query: 979 gcaggaatttattactacctga 1000
||||||||||||||||||||||
Sbjct: 29829 gcaggaatttattactacctga 29808
>Sscrofa_Chr15
|| Length = 157681621
Score = 767 bits (387), Expect = 0.0
Identities = 396/398 (99%), Gaps = 1/398 (0%)
Strand = Plus / Plus
Query: 1 gagacctggcagggatttgggacgctggacaggcagtttcttcacgtagccagagtgcga 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125033561 gagacctggcagggatt-gggacgctggacaggcagtttcttcacgtagccagagtgcga 125033619
Query: 61 acgtggggtgcaaaacgggtcctttgcggcgcggtgggttcggggccctggcagccgttt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 125033620 acgtggggtgcaaaacgggtcctntgcggcgcggtgggttcggggccctggcagccgttt 125033679
Query: 121 tgcggaggtgccacgccctaggggctgggccgtggtgggcccggggtctactccgaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125033680 tgcggaggtgccacgccctaggggctgggccgtggtgggcccggggtctactccgaccac 125033739
Query: 181 ctggaccgcgaagtggcctgggaactggaaggaagatgttccccgggcgctgtccgccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125033740 ctggaccgcgaagtggcctgggaactggaaggaagatgttccccgggcgctgtccgccgc 125033799
Query: 241 ccgcgctactgggccgaggtccccatctcaacgtagattctctttttcccctcttctgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125033800 ccgcgctactgggccgaggtccccatctcaacgtagattctctttttcccctcttctgca 125033859
Query: 301 ggctcgtttctggcatgatggcgcaaagggccttcccgaatccttatgcagattttaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125033860 ggctcgtttctggcatgatggcgcaaagggccttcccgaatccttatgcagattttaaca 125033919
Query: 361 aatccctggccgaaggctactttgattctgctgggagg 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 125033920 aatccctggccgaaggctactttgattctgctgggagg 125033957
Score = 420 bits (212), Expect = e-115
Identities = 212/212 (100%)
Strand = Plus / Minus
Query: 514 caggtatcgctgtgctttacttacacctctatgatgtgtttggggaccctgcctacctgc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124964210 caggtatcgctgtgctttacttacacctctatgatgtgtttggggaccctgcctacctgc 124964151
Query: 574 agatggcacatggctatgcaaagcaaagtctgaactgtttgaccaagcgttccatcacct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124964150 agatggcacatggctatgcaaagcaaagtctgaactgtttgaccaagcgttccatcacct 124964091
Query: 634 tcctgtgtggtgatgcgggccccctggcagtggctgctgtggtgcatgacaagatgaaca 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124964090 tcctgtgtggtgatgcgggccccctggcagtggctgctgtggtgcatgacaagatgaaca 124964031
Query: 694 atgagaagcaggcagaagactgtatcacccgg 725
||||||||||||||||||||||||||||||||
Sbjct: 124964030 atgagaagcaggcagaagactgtatcacccgg 124963999
>Sscrofa_Chr10
|| Length = 79102373
Score = 549 bits (277), Expect = e-153
Identities = 469/532 (88%), Gaps = 12/532 (2%)
Strand = Plus / Minus
Query: 370 ccgaaggctactttgattctgctgggaggctcactcctgagttctcacaacgtgtgaaca 429
|||||||||||||||||| |||||||||||| ||||||| ||||| |||| | ||||||
Sbjct: 54071412 ccgaaggctactttgattttgctgggaggctgactcctgggttcttacaatgcttgaaca 54071353
Query: 430 ataagattcgagagctgcttcagcaaatggagagaggcctaaaatcagcagaccctcgcg 489
||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||| |
Sbjct: 54071352 ataagattcaagagcttcttcagcaaatggagagaggcctaaagtcagcagactctcggg 54071293
Query: 490 atggcactgcttacactggatgggcaggtatcgctgtgctttacttacacctctatgatg 549
||| ||||| ||| |||| |||| ||| |||||||| |||||||| |||||
Sbjct: 54071292 atg---------acactagattggcatgtattactgggctttactcacacctctctgatg 54071242
Query: 550 tgtttggggaccctgcctacctgcagatggcacatggctatgcaaagcaaagtctgaact 609
|||||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct: 54071241 tgtttggg-accctgcctccctgcagatggcacatggctctgtaaagcaaagtctgaact 54071183
Query: 610 gtttgaccaagcgttccatcaccttcctgtgtggtgatgcgggccccctggcagtggctg 669
|||||||||||||||||||||| || || ||||| | | | |||||||||||||||||||
Sbjct: 54071182 gtttgaccaagcgttccatcactttactttgtggggcttcaggccccctggcagtggctg 54071123
Query: 670 ctgtggtgcatgacaagatgaacaatgagaagcaggcagaagactgtatcacccggctaa 729
|||||| |||| ||||||||||| ||||||||| |||||||||| |||||||| ||||
Sbjct: 54071122 ctgtggagcataacaagatgaactgtgagaagcaagcagaagact--atcacccgactaa 54071065
Query: 730 ttcacctaaataagattgacccgcatgctccaaatgaaatgctgtatggacgaatgggct 789
||||||||||||||||||| || | ||| |||||||||||||| |||||| |||||||||
Sbjct: 54071064 ttcacctaaataagattgatccccgtgcaccaaatgaaatgctatatggatgaatgggct 54071005
Query: 790 acatctatgctcttctctttgtgaataagaactttggagtagaaaagattcctcgaagcc 849
||||||||||||||||| |||||| |||||||||| || | |||||||||||||||||||
Sbjct: 54071004 acatctatgctcttctcattgtgagtaagaactttagaatggaaaagattcctcgaagcc 54070945
Query: 850 atattcagcaaatttgtgaaacaatccttacctctggagaaaacctagctag 901
|||||||||| |||||||||||| || | |||||||||||||||||||||||
Sbjct: 54070944 atattcagcagatttgtgaaacagtcttaacctctggagaaaacctagctag 54070893
Score = 95.6 bits (48), Expect = 4e-17
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 301 ggctcgtttctggcatgatggcgcaaagggccttcccgaatccttatgcagattttaaca 360
|||||||||||||||| |||| | |||||||||| || |||||||||||||||| |||||
Sbjct: 54071766 ggctcgtttctggcatcatggtgtaaagggcctttccaaatccttatgcagattataaca 54071707
Query: 361 aatccctggccgaaggctac 380
|| |||||||| ||||||||
Sbjct: 54071706 aacccctggccaaaggctac 54071687
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,601,805
Number of extensions: 176
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 12
Length of query: 1000
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 979
Effective length of database: 2,808,413,156
Effective search space: 2749436479724
Effective search space used: 2749436479724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)