Animal-Genome cDNA 20110601C-001037


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001037
         (1211 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776667.2| apolipoprotein A-I preproprotein [Bos taurus].       445   e-125
Alignment   gi|XP_002693069.1| PREDICTED: apolipoprotein A-I-like [Bos taur...   288   7e-78
Alignment   gi|XP_002684375.1| PREDICTED: apolipoprotein A-I-like [Bos taur...   288   7e-78
Alignment   gi|NP_001032557.1| apolipoprotein A-IV precursor [Bos taurus].        97   3e-20
Alignment   gi|NP_776416.1| apolipoprotein E precursor [Bos taurus].              54   4e-07
Alignment   gi|NP_001076961.1| apolipoprotein A-V [Bos taurus].                   53   5e-07

>ref|NP_776667.2| apolipoprotein A-I preproprotein [Bos taurus].
          Length = 265

 Score =  445 bits (1144), Expect = e-125
 Identities = 222/251 (88%), Positives = 234/251 (93%)
 Frame = +2

Query: 257  GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
            GSQARHFWQQDDPQS WDRVKDFATVYV+AIKDSGRDYVAQFEASALGK LNLKLLDNWD
Sbjct: 15   GSQARHFWQQDDPQSSWDRVKDFATVYVEAIKDSGRDYVAQFEASALGKQLNLKLLDNWD 74

Query: 437  SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
            +L ST +KVREQLGPVTQEFWDNLEKET +LRQEM KDLEEVK+KVQPYLD+FQ KW EE
Sbjct: 75   TLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLDEFQKKWHEE 134

Query: 617  METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
            +E YRQK+APLG EFREGARQKVQELQ+KLSPLA+ELRDR RAHVE LRQQLAPYSDDLR
Sbjct: 135  VEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHVETLRQQLAPYSDDLR 194

Query: 797  QRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
            QR+ AR EALKEGGGSLAEY AKA EQLKALGEKAKP LEDLRQGLLPVLE+LKVSILAA
Sbjct: 195  QRLTARLEALKEGGGSLAEYHAKASEQLKALGEKAKPVLEDLRQGLLPVLESLKVSILAA 254

Query: 977  IDEASKKLNAQ 1009
            IDEASKKLNAQ
Sbjct: 255  IDEASKKLNAQ 265


>ref|XP_002693069.1| PREDICTED: apolipoprotein A-I-like [Bos taurus].
          Length = 208

 Score =  288 bits (737), Expect = 7e-78
 Identities = 145/173 (83%), Positives = 156/173 (90%)
 Frame = +2

Query: 410 NLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLD 589
           +LKLLDNWD+L ST +KVREQLGPVTQEFWDNLEKET +LRQEM KDLEEVK+KVQPYLD
Sbjct: 24  SLKLLDNWDTLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLD 83

Query: 590 DFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQ 769
           +FQ KW EE+E YRQK+APLG EFREGARQKVQELQ+KLSPLA+ELRDR RAH E LRQQ
Sbjct: 84  EFQ-KWHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHAETLRQQ 142

Query: 770 LAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQ 928
           LAPYSDDLR R+ AR EALKEGGGSLAEY AKA EQLKALGEKAKPALE LRQ
Sbjct: 143 LAPYSDDLRPRLTARLEALKEGGGSLAEYHAKASEQLKALGEKAKPALEHLRQ 195


>ref|XP_002684375.1| PREDICTED: apolipoprotein A-I-like [Bos taurus].
          Length = 208

 Score =  288 bits (737), Expect = 7e-78
 Identities = 145/173 (83%), Positives = 156/173 (90%)
 Frame = +2

Query: 410 NLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLD 589
           +LKLLDNWD+L ST +KVREQLGPVTQEFWDNLEKET +LRQEM KDLEEVK+KVQPYLD
Sbjct: 24  SLKLLDNWDTLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLD 83

Query: 590 DFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQ 769
           +FQ KW EE+E YRQK+APLG EFREGARQKVQELQ+KLSPLA+ELRDR RAH E LRQQ
Sbjct: 84  EFQ-KWHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHAETLRQQ 142

Query: 770 LAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQ 928
           LAPYSDDLR R+ AR EALKEGGGSLAEY AKA EQLKALGEKAKPALE LRQ
Sbjct: 143 LAPYSDDLRPRLTARLEALKEGGGSLAEYHAKASEQLKALGEKAKPALEHLRQ 195


>ref|NP_001032557.1| apolipoprotein A-IV precursor [Bos taurus].
          Length = 380

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 60/243 (24%), Positives = 120/243 (49%), Gaps = 4/243 (1%)
 Frame = +2

Query: 308  DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
            D+V      Y   + ++ +  V   + S L + LN    D    + +    ++++L P  
Sbjct: 25   DQVATVIWDYFSQLGNNAKKAVEHIQKSELTQQLNTLFQDKLGEVSTYTDDLQKKLVPFA 84

Query: 488  QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
             E  + L K++E L++E+ K+LE+++ ++ P+  +   K  + +   +Q++ P   E R 
Sbjct: 85   TELHERLTKDSEKLKEEIRKELEDLRARLLPHATEVSQKIGDNVRELQQRLGPYAEELRT 144

Query: 668  GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
                + Q+L+ +L+P  E +   +R +++ L+  LAPY+++L+  +  R E LK   G L
Sbjct: 145  QVDTQAQQLRRQLTPYVERMEKVMRQNLDQLQASLAPYAEELQATVNQRVEELK---GRL 201

Query: 848  AEY----QAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
              Y    Q K +E ++ L     P  +D++  L   LE L   +    +E   K++A+ +
Sbjct: 202  TPYADQLQTKIEENVEELRRSLAPYAQDVQGKLNHQLEGLAFQMKKHAEELKAKISAKAE 261

Query: 1016 ALR 1024
             LR
Sbjct: 262  ELR 264



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
 Frame = +2

Query: 311 RVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQ 490
           R+   AT     I D+ R+   Q       + L  ++      L    T   E++  V +
Sbjct: 112 RLLPHATEVSQKIGDNVREL--QQRLGPYAEELRTQVDTQAQQLRRQLTPYVERMEKVMR 169

Query: 491 EFWDNLEKE----TEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAE 658
           +  D L+       E L+  +++ +EE+K ++ PY D  Q K +E +E  R+ +AP   +
Sbjct: 170 QNLDQLQASLAPYAEELQATVNQRVEELKGRLTPYADQLQTKIEENVEELRRSLAPYAQD 229

Query: 659 FREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGG 838
            +     +++ L  ++   AEEL+ ++ A  E LRQ L P  + +        E L++  
Sbjct: 230 VQGKLNHQLEGLAFQMKKHAEELKAKISAKAEELRQGLVPLVNSVHGSQLGNAEDLQK-- 287

Query: 839 GSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
            SLAE  ++  +Q++       P  E   + ++  L+ L+
Sbjct: 288 -SLAELSSRLDQQVEDFRRTVGPYGETFNKAMVQQLDTLR 326


>ref|NP_776416.1| apolipoprotein E precursor [Bos taurus].
          Length = 316

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
 Frame = +2

Query: 470 QLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAP- 646
           QLGP+ QE    + KE +A +  +  D+E+++ ++  Y  + Q    +  E  R +MA  
Sbjct: 98  QLGPMAQETQARVSKELQAAQARLGSDMEDLRNRLAQYRSEVQAMLGQSTEELRARMASH 157

Query: 647 ---------------------LGAEFREGARQKVQELQEKLSPLAEELRDR--------- 736
                                  A   EGA + +  ++E+  PL E+ + R         
Sbjct: 158 LRKLPKRLLRDADDLKKRLAVYQAGASEGAERSLSAIRERFGPLVEQGQSRAATLSTLAG 217

Query: 737 --LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPA 910
             L    EA RQ+L    +++  R   R + +++    L E  AK +EQ   +  +A+  
Sbjct: 218 QPLLERAEAWRQKLHGRLEEVGVRAQDRLDKIRQ---QLEEVHAKVEEQGNQMRLQAEAF 274

Query: 911 LEDLRQGLLPVLENLK 958
              LR    P++E+++
Sbjct: 275 QARLRSWFEPLVEDMQ 290



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
 Frame = +2

Query: 512  KETEALRQEMSKDL----EEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQ 679
            +E  AL +E  K++    EE++ ++ P   + Q +  +E++  + ++     + R    Q
Sbjct: 75   QELTALMEETMKEVKAYKEELEGQLGPMAQETQARVSKELQAAQARLGSDMEDLRNRLAQ 134

Query: 680  KVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAA-----------RFEAL 826
               E+Q  L    EELR R+ +H+  L ++L   +DDL++R+A               A+
Sbjct: 135  YRSEVQAMLGQSTEELRARMASHLRKLPKRLLRDADDLKKRLAVYQAGASEGAERSLSAI 194

Query: 827  KEGGGSLAEY-QAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKL 1000
            +E  G L E  Q++A       G+      E  RQ L   LE + V     +D+  ++L
Sbjct: 195  RERFGPLVEQGQSRAATLSTLAGQPLLERAEAWRQKLHGRLEEVGVRAQDRLDKIRQQL 253


>ref|NP_001076961.1| apolipoprotein A-V [Bos taurus].
          Length = 368

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 25/208 (12%)
 Frame = +2

Query: 446 STFTKVREQLGPVTQEFWD--NLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEM 619
           S   K  E+LGP+  +  +   L ++   + Q++ ++LEEV+ +++PY+ +   +    +
Sbjct: 63  SDMDKFLEKLGPLNGQGREIPRLPRDPVGMWQQLQEELEEVRARLEPYMAEVHERVGWNL 122

Query: 620 ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAE------------------ELRDRLRA 745
           E  R+++ P   E  E    +V ELQE+L  + E                  EL++R+  
Sbjct: 123 EGLRRQLQPYTVELMEQVALRVHELQEQLRVVGEGTKAQFLGGVDEARGLLQELQNRVAH 182

Query: 746 HVEALRQQLAPYSDDLRQRMAARFEALKEGG-----GSLAEYQAKAQEQLKALGEKAKPA 910
           H   ++    PY++ L   +    + L          S A      Q     L  KAK  
Sbjct: 183 HTGRVKALFHPYAERLVSGIGHHVQELHRSVAPHAIASPARLSRCVQMLSSKLTLKAKAL 242

Query: 911 LEDLRQGLLPVLENLKVSILAAIDEASK 994
            E ++Q L  + E L     A  D+A +
Sbjct: 243 HERIQQNLDQLREELSAFAGARGDDAEE 270


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,636,860
Number of extensions: 1036458
Number of successful extensions: 5648
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5508
Number of HSP's successfully gapped: 9
Length of query: 403
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,207,134
Effective search space: 4233725932
Effective search space used: 4233725932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001037
         (1211 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536564.2| PREDICTED: similar to Apolipoprotein A-I precur...   436   e-122
Alignment   gi|XP_546510.2| PREDICTED: similar to Apolipoprotein A-IV precu...    96   7e-20
Alignment   gi|XP_866043.1| PREDICTED: similar to Apolipoprotein E precurso...    69   1e-11
Alignment   gi|XP_866028.1| PREDICTED: similar to Apolipoprotein E precurso...    69   1e-11
Alignment   gi|XP_533644.1| PREDICTED: similar to Apolipoprotein E precurso...    69   1e-11
Alignment   gi|XP_852597.1| PREDICTED: similar to Apolipoprotein E precurso...    69   1e-11
Alignment   gi|XP_546511.1| PREDICTED: similar to Apolipoprotein A-V precur...    57   3e-08
Alignment   gi|NP_001104237.1| myosin-9 [Canis lupus familiaris].                 54   3e-07
Alignment   gi|XP_532047.2| PREDICTED: similar to centrosomal protein 1 [Ca...    51   2e-06

>ref|XP_536564.2| PREDICTED: similar to Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
            [Canis familiaris].
          Length = 266

 Score =  436 bits (1121), Expect = e-122
 Identities = 216/252 (85%), Positives = 234/252 (92%), Gaps = 1/252 (0%)
 Frame = +2

Query: 257  GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
            GSQARHFWQQD+PQSPWDRVKD ATVYVDA+KDSGRDYVAQFEASALGK LNLKLLDNWD
Sbjct: 15   GSQARHFWQQDEPQSPWDRVKDLATVYVDAVKDSGRDYVAQFEASALGKQLNLKLLDNWD 74

Query: 437  SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
            SL ST TK+REQ+GPVTQEFWDNLEKETE LRQEMSKDLEEVK+KVQPYLDDFQ KWQEE
Sbjct: 75   SLSSTVTKLREQIGPVTQEFWDNLEKETEVLRQEMSKDLEEVKQKVQPYLDDFQKKWQEE 134

Query: 617  METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
            +E YRQK+APLG+E REGARQK+QELQEKLSPL EELRDR R HV+ALR QLAPYSDDLR
Sbjct: 135  VELYRQKVAPLGSELREGARQKLQELQEKLSPLGEELRDRARTHVDALRAQLAPYSDDLR 194

Query: 797  QRMAARFEALKEGGG-SLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILA 973
            +R+AAR +ALKEGGG SLAEY A+A EQL ALGEKA+PALEDLRQGLLPVLE+ KVS+LA
Sbjct: 195  ERLAARLQALKEGGGASLAEYHARASEQLSALGEKARPALEDLRQGLLPVLESFKVSLLA 254

Query: 974  AIDEASKKLNAQ 1009
            AIDEA+KKLNAQ
Sbjct: 255  AIDEATKKLNAQ 266


>ref|XP_546510.2| PREDICTED: similar to Apolipoprotein A-IV precursor (Apo-AIV)
            (ApoA-IV) [Canis familiaris].
          Length = 407

 Score = 95.9 bits (237), Expect = 7e-20
 Identities = 70/283 (24%), Positives = 127/283 (44%), Gaps = 44/283 (15%)
 Frame = +2

Query: 308  DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
            D+V      Y   + ++ ++ V   + S L + LN    D    + +    ++++L P  
Sbjct: 48   DQVATVVWDYFSQLSNNAKEAVEHLQQSELTQQLNALFQDKMGQVNTYTDNLQKKLVPFA 107

Query: 488  QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFR- 664
             E  + L K++E L++E+ K+LEE++ ++ P+  +   K  + M   +Q+  P   E R 
Sbjct: 108  TELHERLSKDSEKLKEEIRKELEELRARLLPHASEVSQKIGDNMRELQQRFGPYAEELRT 167

Query: 665  ---------------------EGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPY 781
                                    RQ V +L   L+P A+EL+ ++  +VE L+  L PY
Sbjct: 168  QVNTHAEQLRNQLTSHAQRMQSALRQNVDDLHSSLTPFADELKAKIDQNVEELKGHLTPY 227

Query: 782  SDDLRQRMAARFEALKEGGGSLAEYQAKAQE-----------QLKALGEKAKPAL----E 916
            +D+L+ ++    E L+    SLA Y    QE           Q+K   E+ K  +    E
Sbjct: 228  TDELKVKIDQNVEELRR---SLAPYAQDVQEKLNHQLEGLAFQMKKNAEELKAKISANAE 284

Query: 917  DLRQGLLPVLENLK-------VSILAAIDEASKKLNAQ*DALR 1024
            +LRQ L PV E+++         +  ++ E S +L+ Q +  R
Sbjct: 285  ELRQRLAPVAEDVRGKLKDNTAGLHKSLAELSSRLDQQVEEFR 327



 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 2/218 (0%)
 Frame = +2

Query: 311 RVKDFATVYVDAIKDSGRDYVAQFE--ASALGKHLNLKLLDNWDSLGSTFTKVREQLGPV 484
           R+   A+     I D+ R+   +F   A  L   +N       + L S   +++  L   
Sbjct: 135 RLLPHASEVSQKIGDNMRELQQRFGPYAEELRTQVNTHAEQLRNQLTSHAQRMQSALRQN 194

Query: 485 TQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFR 664
             +   +L    + L+ ++ +++EE+K  + PY D+ + K  + +E  R+ +AP   + +
Sbjct: 195 VDDLHSSLTPFADELKAKIDQNVEELKGHLTPYTDELKVKIDQNVEELRRSLAPYAQDVQ 254

Query: 665 EGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGS 844
           E    +++ L  ++   AEEL+ ++ A+ E LRQ+LAP ++D+R ++      L +   S
Sbjct: 255 EKLNHQLEGLAFQMKKNAEELKAKISANAEELRQRLAPVAEDVRGKLKDNTAGLHK---S 311

Query: 845 LAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
           LAE  ++  +Q++       P  E   + LL  +E L+
Sbjct: 312 LAELSSRLDQQVEEFRRNVGPYGETFNKALLQQVEELR 349



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
 Frame = +2

Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQK 637
           ++R  L P  Q+  + L  + E L  +M K+ EE+K K+    ++ + +     E  R K
Sbjct: 241 ELRRSLAPYAQDVQEKLNHQLEGLAFQMKKNAEELKAKISANAEELRQRLAPVAEDVRGK 300

Query: 638 MAPLGA-------EFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
           +    A       E      Q+V+E +  + P  E     L   VE LRQ+L PY+ D+ 
Sbjct: 301 LKDNTAGLHKSLAELSSRLDQQVEEFRRNVGPYGETFNKALLQQVEELRQKLGPYAGDME 360

Query: 797 QRMA 808
             ++
Sbjct: 361 DHLS 364


>ref|XP_866043.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 4
           [Canis familiaris].
          Length = 323

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
 Frame = +2

Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
           EQLGP+T E    + KE +A +  +  D+E+V+ ++  Y  + Q    +  EE+      
Sbjct: 104 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 163

Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
                        E  ++++A   A  REGA + V  ++E+L PL E+ R+R        
Sbjct: 164 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 223

Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
              L    +AL QQL    +++  R     E ++E    + E + K +EQ   + +KA+ 
Sbjct: 224 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 280

Query: 908 ALEDLRQGLLPVLENLK 958
               L+    P+LE+++
Sbjct: 281 FQARLKSWFEPLLEDMQ 297


>ref|XP_866028.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 3
           [Canis familiaris].
          Length = 336

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
 Frame = +2

Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
           EQLGP+T E    + KE +A +  +  D+E+V+ ++  Y  + Q    +  EE+      
Sbjct: 117 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 176

Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
                        E  ++++A   A  REGA + V  ++E+L PL E+ R+R        
Sbjct: 177 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 236

Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
              L    +AL QQL    +++  R     E ++E    + E + K +EQ   + +KA+ 
Sbjct: 237 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 293

Query: 908 ALEDLRQGLLPVLENLK 958
               L+    P+LE+++
Sbjct: 294 FQARLKSWFEPLLEDMQ 310


>ref|XP_533644.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 1
           [Canis familiaris].
          Length = 323

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
 Frame = +2

Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
           EQLGP+T E    + KE +A +  +  D+E+V+ ++  Y  + Q    +  EE+      
Sbjct: 104 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 163

Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
                        E  ++++A   A  REGA + V  ++E+L PL E+ R+R        
Sbjct: 164 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 223

Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
              L    +AL QQL    +++  R     E ++E    + E + K +EQ   + +KA+ 
Sbjct: 224 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 280

Query: 908 ALEDLRQGLLPVLENLK 958
               L+    P+LE+++
Sbjct: 281 FQARLKSWFEPLLEDMQ 297


>ref|XP_852597.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 2
           [Canis familiaris].
          Length = 336

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
 Frame = +2

Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
           EQLGP+T E    + KE +A +  +  D+E+V+ ++  Y  + Q    +  EE+      
Sbjct: 117 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 176

Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
                        E  ++++A   A  REGA + V  ++E+L PL E+ R+R        
Sbjct: 177 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 236

Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
              L    +AL QQL    +++  R     E ++E    + E + K +EQ   + +KA+ 
Sbjct: 237 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 293

Query: 908 ALEDLRQGLLPVLENLK 958
               L+    P+LE+++
Sbjct: 294 FQARLKSWFEPLLEDMQ 310


>ref|XP_546511.1| PREDICTED: similar to Apolipoprotein A-V precursor (Apolipoprotein
            A5) (ApoAV) (ApoA-V) (Regeneration associated protein 3)
            [Canis familiaris].
          Length = 367

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
 Frame = +2

Query: 419  LLDNWDSLGSTFTKVREQLGPVTQEFWD--NLEKETEALRQEMSKDLEEVKKKVQPYLDD 592
            L D+ +   S   K  E+L P++ +  +   L  +   +RQ++ ++L EV+ +++PY+ +
Sbjct: 53   LKDSLEQDLSKMDKFLEKLSPLSGQGREPLGLPPDPVGMRQQLQEELAEVRARLEPYMGE 112

Query: 593  FQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQL 772
               +    +E  R+++ P  AE  E    +VQELQE+L  + E  + ++   V+  R+ L
Sbjct: 113  VHEQVGWNLEGLRRQLKPYTAELMEQVALRVQELQEQLRVVGEGTKAQVLGGVDEARELL 172

Query: 773  APYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLEN 952
                D            +   G   A ++  AQ  +  +G      +++L + ++P    
Sbjct: 173  RELQD----------RVVHHTGRVKALFRPYAQRLVTGIGRH----VQELHRSVVPHAAA 218

Query: 953  LKVSILAAIDEASKKLNAQ*DALRPR 1030
                +   +   S+KL  + +AL  R
Sbjct: 219  SPARLSRCVQMLSRKLTLKAEALHAR 244


>ref|NP_001104237.1| myosin-9 [Canis lupus familiaris].
          Length = 1960

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 22/239 (9%)
 Frame = +2

Query: 371  VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
            +A+ E  A  K++ LK             K+RE    ++ E  ++LE E       E  +
Sbjct: 1089 LARVEEEATQKNMALK-------------KIRELESQIS-ELQEDLESERASRNKAEKQK 1134

Query: 533  QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
            +++ ++LE +K +++  LD      Q+E+ + R Q++  L     E AR    ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVNILKKTLEEEARTHEAQIQEMRQ 1192

Query: 701  KLSPLAEELRD------RLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQA 862
            K S   EEL +      R++A++E  +Q L    ++ R  +A   + L++G G     + 
Sbjct: 1193 KHSQAVEELAEQLEQTKRVKANLEKAKQTL----ENERGELANEVKVLQQGKGDSEHKRK 1248

Query: 863  KAQEQLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
            KA+ QL+ L      GE+ +  L D    L   L+N+ + +L   D  S KL     AL
Sbjct: 1249 KAEAQLQELQVKFTEGERVRTELADKVTKLQVELDNV-MGLLTQSDSKSSKLTKDFSAL 1306


>ref|XP_532047.2| PREDICTED: similar to centrosomal protein 1 [Canis familiaris].
          Length = 2589

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
 Frame = +2

Query: 308  DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDN-WDSLGSTFTKVREQLGPV 484
            + +KD   V  D++ DS        +A   GK   L +++  +  L S   ++  ++   
Sbjct: 532  NEIKDLEIV-TDSL-DSRDPKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKE 589

Query: 485  TQEFWDNLEKETE---ALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGA 655
            T+E  D  E+ TE   A  + + KDLE V   +Q YL+  + + ++     R+       
Sbjct: 590  TEEIKDLEEQLTEGQIAANEALKKDLESVISGLQEYLETVKGQARQAQNECRK------- 642

Query: 656  EFREGARQKVQELQEKLSPLAEELRDRLRA---HVEALRQQLAPYSDDLRQRMAARFEAL 826
                  + + + L ++LS + +E RD+L       E +R++LA   + L+++      +L
Sbjct: 643  -----LQDEKETLLQRLSEVEQE-RDQLEIVAIDAENMRKELAELENALQEQHEVNI-SL 695

Query: 827  KEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKK 997
            ++  G L+ Y+A+ + QLK    +A    E+L +  L  L  L+ S L A  E  K+
Sbjct: 696  QQTQGDLSAYEAELEAQLKIRDAEANQLKEELEK--LRRLSQLEQSALQAELEKEKQ 750


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,005,601
Number of extensions: 1017026
Number of successful extensions: 6099
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5958
Number of HSP's successfully gapped: 15
Length of query: 403
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 298
Effective length of database: 15,374,224
Effective search space: 4581518752
Effective search space used: 4581518752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001037
         (1211 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000030.1| apolipoprotein A-I preproprotein [Homo sapiens].     404   e-113
Alignment   gi|NP_000473.2| apolipoprotein A-IV precursor [Homo sapiens].         95   1e-19
Alignment   gi|NP_000032.1| apolipoprotein E precursor [Homo sapiens].            60   4e-09
Alignment   gi|NP_443200.2| apolipoprotein A-V precursor [Homo sapiens].          55   2e-07
Alignment   gi|NP_001160070.1| apolipoprotein A-V precursor [Homo sapiens].       55   2e-07
Alignment   gi|NP_002464.1| myosin-9 [Homo sapiens].                              50   4e-06

>ref|NP_000030.1| apolipoprotein A-I preproprotein [Homo sapiens].
          Length = 267

 Score =  404 bits (1039), Expect = e-113
 Identities = 203/253 (80%), Positives = 222/253 (87%), Gaps = 2/253 (0%)
 Frame = +2

Query: 257  GSQARHFWQQDDP-QSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNW 433
            GSQARHFWQQD+P QSPWDRVKD ATVYVD +KDSGRDYV+QFE SALGK LNLKLLDNW
Sbjct: 15   GSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNW 74

Query: 434  DSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQE 613
            DS+ STF+K+REQLGPVTQEFWDNLEKETE LRQEMSKDLEEVK KVQPYLDDFQ KWQE
Sbjct: 75   DSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQE 134

Query: 614  EMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDL 793
            EME YRQK+ PL AE +EGARQK+ ELQEKLSPL EE+RDR RAHV+ALR  LAPYSD+L
Sbjct: 135  EMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 194

Query: 794  RQRMAARFEALKEGGGS-LAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSIL 970
            RQR+AAR EALKE GG+ LAEY AKA E L  L EKAKPALEDLRQGLLPVLE+ KVS L
Sbjct: 195  RQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFL 254

Query: 971  AAIDEASKKLNAQ 1009
            +A++E +KKLN Q
Sbjct: 255  SALEEYTKKLNTQ 267


>ref|NP_000473.2| apolipoprotein A-IV precursor [Homo sapiens].
          Length = 396

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 56/245 (22%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
 Frame = +2

Query: 308  DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
            D+V      Y   + ++ ++ V   + S L + LN    D    + +    ++++L P  
Sbjct: 25   DQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFA 84

Query: 488  QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
             E  + L K++E L++E+ K+LEE++ ++ P+ ++   K  + +   +Q++ P   + R 
Sbjct: 85   TELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRT 144

Query: 668  GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
                + ++L+ +L+P A+ +   LR + ++L+  L P++D+L+ ++    E LK   G L
Sbjct: 145  QVSTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELK---GRL 201

Query: 848  A----EYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
                 E++ K  + ++ L     P  +D ++ L   LE L   +    +E   +++A  +
Sbjct: 202  TPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAE 261

Query: 1016 ALRPR 1030
             LR R
Sbjct: 262  ELRQR 266



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 48/179 (26%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
 Frame = +2

Query: 434 DSLGSTFTKVREQLGPVTQEFWDNLEKE----TEALRQEMSKDLEEVKKKVQPYLDDFQN 601
           + L    T   +++  V +E  D+L+       + L+ ++ +++EE+K ++ PY D+F+ 
Sbjct: 151 EQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKV 210

Query: 602 KWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPY 781
           K  + +E  R+ +AP   + +E    +++ L  ++   AEEL+ R+ A  E LRQ+LAP 
Sbjct: 211 KIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPL 270

Query: 782 SDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
           ++D+R  +    E L++   SLAE      +Q++    + +P  E+  + L+  +E L+
Sbjct: 271 AEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLR 326



 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 34/131 (25%), Positives = 61/131 (46%)
 Frame = +2

Query: 440 LGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEM 619
           +  T  ++R  L P  Q+  + L  + E L  +M K+ EE+K ++               
Sbjct: 212 IDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISA-----------SA 260

Query: 620 ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQ 799
           E  RQ++APL  + R   R   + LQ+ L+    EL   L   VE  R+++ PY ++  +
Sbjct: 261 EELRQRLAPLAEDVRGNLRGNTEGLQKSLA----ELGGHLDQQVEEFRRRVEPYGENFNK 316

Query: 800 RMAARFEALKE 832
            +  + E L++
Sbjct: 317 ALVQQMEQLRQ 327


>ref|NP_000032.1| apolipoprotein E precursor [Homo sapiens].
          Length = 317

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 3/218 (1%)
 Frame = +2

Query: 386  ASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVK 565
            +S + + L   + +    L +  +++ EQL PV +E    L KE +A +  +  D+E+V 
Sbjct: 71   SSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVC 130

Query: 566  KKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRA 745
             ++  Y  + Q    +  E  R ++A    + R+   +   +LQ++L+      R+    
Sbjct: 131  GRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAER 190

Query: 746  HVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLR 925
             + A+R++L P  +  R R A          GSLA      QE+ +A GE+ +  +E++ 
Sbjct: 191  GLSAIRERLGPLVEQGRVRAAT--------VGSLA--GQPLQERAQAWGERLRARMEEMG 240

Query: 926  QGLLPVLENLK---VSILAAIDEASKKLNAQ*DALRPR 1030
                  L+ +K     + A ++E ++++  Q +A + R
Sbjct: 241  SRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQAR 278


>ref|NP_443200.2| apolipoprotein A-V precursor [Homo sapiens].
          Length = 366

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 31/112 (27%), Positives = 60/112 (53%)
 Frame = +2

Query: 419 LLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ 598
           L D+ +   +   K  E+L P++      L ++   +R+++ ++LEEVK ++QPY+ +  
Sbjct: 56  LKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAH 115

Query: 599 NKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVE 754
                 +E  RQ++ P   +  E    +VQELQE+L  + E+ + +L   V+
Sbjct: 116 ELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKAQLLGGVD 167



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
 Frame = +2

Query: 452 FTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKK---KVQPYLDDFQNKWQEEME 622
           F++     G V Q     + +E   L+  + +DL  + K   K++P             E
Sbjct: 31  FSQTSGDKGRVEQIHQQKMAREPATLKDSLEQDLNNMNKFLEKLRPLSGS---------E 81

Query: 623 TYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQR 802
             R    P+G   R   +++++E++ +L P   E  + +  ++E LRQQL PY+ DL ++
Sbjct: 82  APRLPQDPVG--MRRQLQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQ 139

Query: 803 MAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPAL 913
           +A R + L              QEQL+ +GE  K  L
Sbjct: 140 VALRVQEL--------------QEQLRVVGEDTKAQL 162


>ref|NP_001160070.1| apolipoprotein A-V precursor [Homo sapiens].
          Length = 366

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 31/112 (27%), Positives = 60/112 (53%)
 Frame = +2

Query: 419 LLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ 598
           L D+ +   +   K  E+L P++      L ++   +R+++ ++LEEVK ++QPY+ +  
Sbjct: 56  LKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAH 115

Query: 599 NKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVE 754
                 +E  RQ++ P   +  E    +VQELQE+L  + E+ + +L   V+
Sbjct: 116 ELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKAQLLGGVD 167



 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
 Frame = +2

Query: 452 FTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKK---KVQPYLDDFQNKWQEEME 622
           F++     G V Q     + +E   L+  + +DL  + K   K++P             E
Sbjct: 31  FSQTSGDKGRVEQIHQQKMAREPATLKDSLEQDLNNMNKFLEKLRPLSGS---------E 81

Query: 623 TYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQR 802
             R    P+G   R   +++++E++ +L P   E  + +  ++E LRQQL PY+ DL ++
Sbjct: 82  APRLPQDPVG--MRRQLQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQ 139

Query: 803 MAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPAL 913
           +A R + L              QEQL+ +GE  K  L
Sbjct: 140 VALRVQEL--------------QEQLRVVGEDTKAQL 162


>ref|NP_002464.1| myosin-9 [Homo sapiens].
          Length = 1960

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
 Frame = +2

Query: 371  VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
            +A+ E  A  K++ LK             K+RE    ++ E  ++LE E       E  +
Sbjct: 1089 LARVEEEAAQKNMALK-------------KIRELESQIS-ELQEDLESERASRNKAEKQK 1134

Query: 533  QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
            +++ ++LE +K +++  LD      Q+E+ + R Q++  L     E A+    ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQ 1192

Query: 701  KLSPLAEELRD------RLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQA 862
            K S   EEL +      R++A++E  +Q L    ++ R  +A   + L +G G     + 
Sbjct: 1193 KHSQAVEELAEQLEQTKRVKANLEKAKQTL----ENERGELANEVKVLLQGKGDSEHKRK 1248

Query: 863  KAQEQLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
            K + QL+ L      GE+ +  L D    L   L+N+   +L+  D  S KL     AL
Sbjct: 1249 KVEAQLQELQVKFNEGERVRTELADKVTKLQVELDNV-TGLLSQSDSKSSKLTKDFSAL 1306


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,156,566
Number of extensions: 980747
Number of successful extensions: 5708
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5510
Number of HSP's successfully gapped: 10
Length of query: 403
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,835,944
Effective search space: 4421111312
Effective search space used: 4421111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001037
         (1211 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033822.2| apolipoprotein A-I preproprotein [Mus musculus].     342   3e-94
Alignment   gi|NP_031494.2| apolipoprotein A-IV precursor [Mus musculus].         79   9e-15
Alignment   gi|NP_033826.2| apolipoprotein E precursor [Mus musculus].            69   6e-12
Alignment   gi|NP_536682.2| apolipoprotein A-V precursor [Mus musculus].          53   4e-07
Alignment   gi|NP_071855.2| myosin-9 isoform 1 [Mus musculus].                    50   3e-06
Alignment   gi|NP_001034251.1| CAP-Gly domain-containing linker protein 2 i...    50   5e-06
Alignment   gi|NP_034120.2| CAP-Gly domain-containing linker protein 2 isof...    50   5e-06

>ref|NP_033822.2| apolipoprotein A-I preproprotein [Mus musculus].
          Length = 264

 Score =  342 bits (877), Expect = 3e-94
 Identities = 162/251 (64%), Positives = 210/251 (83%)
 Frame = +2

Query: 257  GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
            GSQA H WQQD+PQS WD+VKDFA VYVDA+KDSGRDYV+QFE+S+LG+ LNL LL+NWD
Sbjct: 15   GSQAWHVWQQDEPQSQWDKVKDFANVYVDAVKDSGRDYVSQFESSSLGQQLNLNLLENWD 74

Query: 437  SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
            +LGST ++++E+LGP+T++FWDNLEKET+ +RQEM+KDLEEVK+KVQPYLD+FQ KW+E+
Sbjct: 75   TLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKED 134

Query: 617  METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
            +E YRQK+APLGAE +E ARQK+QELQ +LSP+AEE RDR+R HV++LR QLAP+S+ +R
Sbjct: 135  VELYRQKVAPLGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMR 194

Query: 797  QRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
            + +A R   LK    +L EY  +A+  LK LGEKA+PALEDLR  L+P+LE LK  + + 
Sbjct: 195  ESLAQRLAELK-SNPTLNEYHTRAKTHLKTLGEKARPALEDLRHSLMPMLETLKTQVQSV 253

Query: 977  IDEASKKLNAQ 1009
            ID+AS+ L AQ
Sbjct: 254  IDKASETLTAQ 264


>ref|NP_031494.2| apolipoprotein A-IV precursor [Mus musculus].
          Length = 395

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 49/243 (20%), Positives = 116/243 (47%), Gaps = 4/243 (1%)
 Frame = +2

Query: 308  DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
            D+V +    Y   + ++ ++ V QF+ + + + L+    D      +    V  +L P  
Sbjct: 25   DQVANVVWDYFTQLSNNAKEAVEQFQKTDVTQQLSTLFQDKLGDASTYADGVHNKLVPFV 84

Query: 488  QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
             +   +L +ETE +++E+ K+LE+++ ++ P+ +     + E M+  ++ + P   + ++
Sbjct: 85   VQLSGHLAQETERVKEEIKKELEDLRDRMMPHANKVTQTFGENMQKLQEHLKPYAVDLQD 144

Query: 668  GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
                + QE++ +L+P  + ++  ++ +V+ L   + P + +L+ +     E LK   G L
Sbjct: 145  QINTQTQEMKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNLKDKFNRNMEELK---GHL 201

Query: 848  A----EYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
                 E +A   + L+ L     P    +++ L   +E L   +    +E   K++A+ D
Sbjct: 202  TPRANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAEELQTKVSAKID 261

Query: 1016 ALR 1024
             L+
Sbjct: 262  QLQ 264



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)
 Frame = +2

Query: 395  LGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEM----------- 541
            L +HL    +D  D + +   +++ QL P  Q     +++  + L   M           
Sbjct: 131  LQEHLKPYAVDLQDQINTQTQEMKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNLKDKF 190

Query: 542  SKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAE 721
            ++++EE+K  + P  ++ +    + +E  R+ +APL    +E    +++ L  ++   AE
Sbjct: 191  NRNMEELKGHLTPRANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAE 250

Query: 722  ELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKA 901
            EL+ ++ A ++ L++ LAP  +D++ ++    E L++   SL +   + ++Q++      
Sbjct: 251  ELQTKVSAKIDQLQKNLAPLVEDVQSKVKGNTEGLQK---SLEDLNRQLEQQVEEFRRTV 307

Query: 902  KPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DALRPR 1030
            +P  E   + L+  LE  +  +     E    L+    +LR +
Sbjct: 308  EPMGEMFNKALVQQLEQFRQQLGPNSGEVESHLSFLEKSLREK 350



 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 38/185 (20%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
 Frame = +2

Query: 386 ASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVK 565
           A+ L   ++  L D   SL      V+E+L    +     ++K  E L+ ++S  +++++
Sbjct: 205 ANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAEELQTKVSAKIDQLQ 264

Query: 566 KKVQPYLDDFQNK------------------WQEEMETYRQKMAPLGAEFREGARQKVQE 691
           K + P ++D Q+K                   ++++E +R+ + P+G  F +   Q++++
Sbjct: 265 KNLAPLVEDVQSKVKGNTEGLQKSLEDLNRQLEQQVEEFRRTVEPMGEMFNKALVQQLEQ 324

Query: 692 LQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAA-RFEALKEGGGSLAEYQAKA 868
            +++L P + E+   L    ++LR+++  +   L ++ +  + +AL     +  + Q +A
Sbjct: 325 FRQQLGPNSGEVESHLSFLEKSLREKVNSFMSTLEKKGSPDQPQALPLPEQAQEQAQEQA 384

Query: 869 QEQLK 883
           QEQ++
Sbjct: 385 QEQVQ 389


>ref|NP_033826.2| apolipoprotein E precursor [Mus musculus].
          Length = 311

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 49/234 (20%), Positives = 109/234 (46%), Gaps = 7/234 (2%)
 Frame = +2

Query: 278 WQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFT 457
           WQ + P   W++  +    Y+  ++        + ++S + + L   + D    + +   
Sbjct: 30  WQSNQP---WEQALNRFWDYLRWVQTLSDQVQEELQSSQVTQELTALMEDTMTEVKAYKK 86

Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQK 637
           ++ EQLGPV +E    L KE +A +  +  D+E+++ ++  Y ++      +  E  R +
Sbjct: 87  ELEEQLGPVAEETRARLGKEVQAAQARLGADMEDLRNRLGQYRNEVHTMLGQSTEEIRAR 146

Query: 638 MAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARF 817
           ++    + R+   +  ++LQ++L+      R+     V A+R++L P  +  RQR A   
Sbjct: 147 LSTHLRKMRKRLMRDAEDLQKRLAVYKAGAREGAERGVSAIRERLGPLVEQGRQRTA--- 203

Query: 818 EALKEGGGSLAEYQAKAQE-------QLKALGEKAKPALEDLRQGLLPVLENLK 958
                G G+    + +AQ        +L+ +G +A+  LE++R+ +  V   ++
Sbjct: 204 ---NLGAGAAQPLRDRAQAFGDRIRGRLEEVGNQARDRLEEVREHMEEVRSKME 254


>ref|NP_536682.2| apolipoprotein A-V precursor [Mus musculus].
          Length = 368

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
 Frame = +2

Query: 467  EQLGPVTQEFWDN--LEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKM 640
            E+LGP+     +   L ++ E +R+++ ++L EV  +++PY+     +    +E  RQ++
Sbjct: 65   EKLGPLRGPGKEPPLLAQDPEGIRKQLQQELGEVSSRLEPYMAAKHQQVGWNLEGLRQQL 124

Query: 641  APLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEA-------LRQQLAPYSDDLRQ 799
             P  AE  E     VQELQE+L  + E+ + +L   V+        ++ ++  ++D +++
Sbjct: 125  KPYTAELMEQVGLSVQELQEQLRVVGEDTKAQLLGGVDEALNLLQDMQSRVLHHTDRVKE 184

Query: 800  RMAARFEALKEG-GGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
                  E L  G G  + E          A   +    ++ L   L    ++L  SI   
Sbjct: 185  LFHPYAERLVTGIGHHVQELHRSVAPHAAASPARLSRCVQTLSHKLTRKAKDLHTSIQRN 244

Query: 977  IDEASKKLNA 1006
            +D+   +L+A
Sbjct: 245  LDQLRDELSA 254


>ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus].
          Length = 1960

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 18/235 (7%)
 Frame = +2

Query: 371  VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
            +A+ E  A  K++ LK             K+RE L     E  ++LE E       E  +
Sbjct: 1089 LARVEEEAAQKNMALK-------------KIRE-LETQISELQEDLESERASRNKAEKQK 1134

Query: 533  QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
            +++ ++LE +K +++  LD      Q+E+ + R Q+++ L     + A+    ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVSILKKTLEDEAKTHEAQIQEMRQ 1192

Query: 701  KLSPLAEELRDRLR--AHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQE 874
            K S   EEL D+L     V+A  ++     ++ R  +A   +AL +G G     + K + 
Sbjct: 1193 KHSQAVEELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEA 1252

Query: 875  QLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
            QL+ L      GE+ +  L D    L   L+++   +L+  D  S KL     AL
Sbjct: 1253 QLQELQVKFSEGERVRTELADKVTKLQVELDSV-TGLLSQSDSKSSKLTKDFSAL 1306


>ref|NP_001034251.1| CAP-Gly domain-containing linker protein 2 isoform b [Mus musculus].
          Length = 1012

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 20/201 (9%)
 Frame = +2

Query: 410  NLKLLDNW----DSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQ 577
            N+ L+DNW    DSL S   K  E L           +KE      E+   +E +K + Q
Sbjct: 572  NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIG----ELKALVEGIKMEHQ 627

Query: 578  PYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEA 757
              L + Q K   ++ET     A  G E +EG RQK+QE+QE+L+ L +  R++L      
Sbjct: 628  LELGNLQAK--HDLET-----AMHGKE-KEGLRQKLQEVQEELAGLQQHWREQLEEQASQ 679

Query: 758  LRQQLAPYSDDLR----------------QRMAARFEALKEGGGSLAEYQAKAQEQLKAL 889
             R +L    D  R                +  A   E LKE   SLAE +    E L+  
Sbjct: 680  HRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKE-QISLAEKKMLDYEMLQRA 738

Query: 890  GEKAKPALEDLRQGLLPVLEN 952
              +++   E LR+ LL V EN
Sbjct: 739  EAQSRQEAERLREKLL-VAEN 758


>ref|NP_034120.2| CAP-Gly domain-containing linker protein 2 isoform a [Mus musculus].
          Length = 1047

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 20/201 (9%)
 Frame = +2

Query: 410  NLKLLDNW----DSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQ 577
            N+ L+DNW    DSL S   K  E L           +KE      E+   +E +K + Q
Sbjct: 607  NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIG----ELKALVEGIKMEHQ 662

Query: 578  PYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEA 757
              L + Q K   ++ET     A  G E +EG RQK+QE+QE+L+ L +  R++L      
Sbjct: 663  LELGNLQAK--HDLET-----AMHGKE-KEGLRQKLQEVQEELAGLQQHWREQLEEQASQ 714

Query: 758  LRQQLAPYSDDLR----------------QRMAARFEALKEGGGSLAEYQAKAQEQLKAL 889
             R +L    D  R                +  A   E LKE   SLAE +    E L+  
Sbjct: 715  HRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKE-QISLAEKKMLDYEMLQRA 773

Query: 890  GEKAKPALEDLRQGLLPVLEN 952
              +++   E LR+ LL V EN
Sbjct: 774  EAQSRQEAERLREKLL-VAEN 793


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,228,627
Number of extensions: 806983
Number of successful extensions: 4592
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4447
Number of HSP's successfully gapped: 9
Length of query: 403
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 299
Effective length of database: 12,493,815
Effective search space: 3735650685
Effective search space used: 3735650685
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001037
         (1211 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999563.1| apolipoprotein A-I preproprotein [Sus scrofa].       484   e-137
Alignment   gi|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa].          101   1e-21
Alignment   gi|NP_999473.1| apolipoprotein E precursor [Sus scrofa].              69   7e-12
Alignment   gi|NP_001152780.1| apolipoprotein A-V [Sus scrofa].                   65   8e-11
Alignment   gi|XP_003126114.2| PREDICTED: myosin-9 [Sus scrofa].                  50   3e-06
Alignment   gi|XP_003353396.1| PREDICTED: cingulin-like protein 1-like [Sus...    49   4e-06
Alignment   gi|XP_003129941.2| PREDICTED: centrosomal protein of 164 kDa [S...    49   6e-06

>ref|NP_999563.1| apolipoprotein A-I preproprotein [Sus scrofa].
          Length = 264

 Score =  484 bits (1245), Expect = e-137
 Identities = 246/251 (98%), Positives = 247/251 (98%)
 Frame = +2

Query: 257  GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
            GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD
Sbjct: 15   GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 74

Query: 437  SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
            SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE
Sbjct: 75   SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 134

Query: 617  METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
            METYRQKM PLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHV ALRQ +APYSDDLR
Sbjct: 135  METYRQKM-PLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVAALRQHVAPYSDDLR 193

Query: 797  QRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
            QRMAARFEALKEGG SLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA
Sbjct: 194  QRMAARFEALKEGGDSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 253

Query: 977  IDEASKKLNAQ 1009
            IDEASKKLNAQ
Sbjct: 254  IDEASKKLNAQ 264



 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
 Frame = +2

Query: 689  ELQEKLSPLAEELRDRLRAHVEALRQQLA-----------PYSDDLRQRMAARFEALKEG 835
            +++E+L P+ +E  D L    EALRQ+++           PY DD + +     E  ++ 
Sbjct: 82   KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQK 141

Query: 836  GGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
                AE++  A+++++ L EK  P  E+LR  L   +  L+  +    D+  +++ A+ +
Sbjct: 142  MPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVAALRQHVAPYSDDLRQRMAARFE 201

Query: 1016 ALR 1024
            AL+
Sbjct: 202  ALK 204


>ref|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa].
          Length = 382

 Score =  101 bits (251), Expect = 1e-21
 Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 4/245 (1%)
 Frame = +2

Query: 308  DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
            D+V      Y   +  + +  V   + S L + LN    D    + +    ++++L P  
Sbjct: 25   DQVATVMWDYFSQLGSNAKKAVEHLQKSELTQQLNTLFQDKLGEVNTYTEDLQKKLVPFA 84

Query: 488  QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
             E  + L K++E L++E+ ++LEE++ ++ P+  +   K  + +   +Q++ P     R 
Sbjct: 85   TELHERLTKDSEKLKEEIRRELEELRARLLPHATEVSQKIGDNVRELQQRLGPFTGGLRT 144

Query: 668  GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
                +VQ+LQ +L P AE +   LR ++  L   +APY+D+ + ++    E LK   GSL
Sbjct: 145  QVNTQVQQLQRQLKPYAERMESVLRQNIRNLEASVAPYADEFKAKIDQNVEELK---GSL 201

Query: 848  AEY----QAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
              Y    +AK  + ++ L     P  +D+++ L   LE L   +    +E   K++A  D
Sbjct: 202  TPYAEELKAKIDQNVEELRRSLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANAD 261

Query: 1016 ALRPR 1030
             LR +
Sbjct: 262  ELRQK 266



 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 39/168 (23%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
 Frame = +2

Query: 467 EQLGPVTQEFWDNLEKET----EALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQ 634
           E++  V ++   NLE       +  + ++ +++EE+K  + PY ++ + K  + +E  R+
Sbjct: 162 ERMESVLRQNIRNLEASVAPYADEFKAKIDQNVEELKGSLTPYAEELKAKIDQNVEELRR 221

Query: 635 KMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAAR 814
            +AP   + +E    +++ L  ++   AEEL+ ++ A+ + LRQ+L P ++++   +   
Sbjct: 222 SLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGN 281

Query: 815 FEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
            E L++   SL E ++   +Q++    K +P  E   + L+  +E+L+
Sbjct: 282 TEGLQK---SLLELRSHLDQQVEEFRLKVEPYGETFNKALVQQVEDLR 326



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
 Frame = +2

Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKW---------- 607
           ++R  L P  Q+  + L  + E L  +M K  EE+K K+    D+ + K           
Sbjct: 218 ELRRSLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANADELRQKLVPVAENVHGH 277

Query: 608 -------------------QEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELR 730
                               +++E +R K+ P G  F +   Q+V++L++KL PLA +  
Sbjct: 278 LKGNTEGLQKSLLELRSHLDQQVEEFRLKVEPYGETFNKALVQQVEDLRQKLGPLAGD-- 335

Query: 731 DRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKA 886
             +  H+  L +       DLR ++   F  LKE           AQE+ +A
Sbjct: 336 --VEGHLSFLEK-------DLRDKVNTFFSTLKEEASQGQSQALPAQEKAQA 378



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 32/130 (24%), Positives = 59/130 (45%)
 Frame = +2

Query: 380 FEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEE 559
           F+     + L  K+  N D L      V E +    +   + L+K    LR  + + +EE
Sbjct: 243 FQMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGNTEGLQKSLLELRSHLDQQVEE 302

Query: 560 VKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRL 739
            + KV+PY + F     +++E  RQK+ PL             +++  LS L ++LRD++
Sbjct: 303 FRLKVEPYGETFNKALVQQVEDLRQKLGPLAG-----------DVEGHLSFLEKDLRDKV 351

Query: 740 RAHVEALRQQ 769
                 L+++
Sbjct: 352 NTFFSTLKEE 361


>ref|NP_999473.1| apolipoprotein E precursor [Sus scrofa].
          Length = 317

 Score = 68.6 bits (166), Expect = 7e-12
 Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 4/257 (1%)
 Frame = +2

Query: 272  HFWQQDDP---QSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSL 442
            H W ++       PW++       Y+  ++        +  ++ + + L   + ++   +
Sbjct: 29   HVWWEESKWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEV 88

Query: 443  GSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEME 622
             +   ++  QLGPVTQE    L KE +A +  +  D+E+V+ ++  Y  +  N   +  E
Sbjct: 89   KAYREELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTE 148

Query: 623  TYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQR 802
              R ++A      R+   +  ++LQ++L+     LR+     V ALR++L P  +  R R
Sbjct: 149  ELRSRLASHLRNVRKRLVRDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLR 208

Query: 803  MAARFEALKEGGGSLAE-YQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAI 979
             A       +     AE +  K + +L+ +G + +  L+++R  L          +   +
Sbjct: 209  AATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMRDEL--------EEVRTKV 260

Query: 980  DEASKKLNAQ*DALRPR 1030
            +E   +L  Q +A + R
Sbjct: 261  EEQGSQLRLQAEAFQAR 277


>ref|NP_001152780.1| apolipoprotein A-V [Sus scrofa].
          Length = 363

 Score = 65.1 bits (157), Expect = 8e-11
 Identities = 35/116 (30%), Positives = 65/116 (56%)
 Frame = +2

Query: 416 KLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDF 595
           +L D+ +   +   K  E+LGP+     + L ++   +RQ++ K+LEEV+K+++PY+ + 
Sbjct: 55  RLKDSLEQNLNNMDKFLEKLGPL-----NGLPQDPVGMRQQLQKELEEVRKRLEPYMTEM 109

Query: 596 QNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALR 763
             +    +E  RQ++ P   E  E    +VQ+LQE+L  + E+ + +L   VE  R
Sbjct: 110 HERVSWNLEGLRQQLQPYTTELMEQVALRVQDLQEQLRVVGEDTKAQLLGGVEEAR 165



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
 Frame = +2

Query: 494 FWD-------NLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLG 652
           FWD       N  +  +  +Q+++++   +K  ++  L++        M+ + +K+ PL 
Sbjct: 27  FWDYFSQSSGNKGRVEQIQQQKLAQEPTRLKDSLEQNLNN--------MDKFLEKLGPLN 78

Query: 653 A------EFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAAR 814
                    R+  +++++E++++L P   E+ +R+  ++E LRQQL PY+ +L +++A R
Sbjct: 79  GLPQDPVGMRQQLQKELEEVRKRLEPYMTEMHERVSWNLEGLRQQLQPYTTELMEQVALR 138

Query: 815 FEALKEGGGSLAEYQAKAQEQLKALGEKAKPAL----EDLRQGLLPVLEN 952
            + L              QEQL+ +GE  K  L    E+ R GLL  L+N
Sbjct: 139 VQDL--------------QEQLRVVGEDTKAQLLGGVEEAR-GLLQELQN 173


>ref|XP_003126114.2| PREDICTED: myosin-9 [Sus scrofa].
          Length = 1984

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
 Frame = +2

Query: 371  VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
            +A+ E  A  K++ LK             K+RE    ++ E  ++LE E       E  +
Sbjct: 1089 LARVEEEAAQKNMALK-------------KIRELESQIS-ELQEDLESERAARNKAEKQK 1134

Query: 533  QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
            +++ ++LE +K +++  LD      Q+E+ + R Q++  L     E A+    ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQ 1192

Query: 701  KLSPLAEELRD------RLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQA 862
            K S   EEL +      R++A++E  +Q L    ++ R  +A   + L +G G     + 
Sbjct: 1193 KHSQAVEELAEQLEQTKRVKANLEKAKQTL----ENERGELANEVKVLLQGKGDSEHKRK 1248

Query: 863  KAQEQLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
            K + QL+ +      GE+ +  L D    L   L+N+   +L   D  S KL+    AL
Sbjct: 1249 KVEAQLQEMQVKVTEGERVRTELADKVSKLQVELDNV-TGLLTQSDSKSSKLSKDFSAL 1306


>ref|XP_003353396.1| PREDICTED: cingulin-like protein 1-like [Sus scrofa].
          Length = 690

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
 Frame = +2

Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKK----KVQPYLDDFQNKWQEEMET 625
           ++R     +  E W +L+K  E L++EM+ D+ EV +    ++Q  LD+++ K + E+  
Sbjct: 319 QLRRLKNEMENERW-HLDKTIEKLQKEMA-DIVEVSRTSTLELQNQLDEYKEKNRRELAE 376

Query: 626 YRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEAL--RQQLAPYSDDLRQ 799
            ++++     E  E +R    ++Q+++  L EELRD  RA  EAL  RQ L     DL  
Sbjct: 377 MQRQLKEKTLE-AEKSRLNAVKMQDEMRLLEEELRDYQRAQEEALTKRQLLEQTLKDLEY 435

Query: 800 RMAARFEALKEGGGSLAEYQAKAQEQLK 883
            + A+   LK+  G L +       QL+
Sbjct: 436 ELEAK-SHLKDDRGRLVKQMEDKMSQLE 462


>ref|XP_003129941.2| PREDICTED: centrosomal protein of 164 kDa [Sus scrofa].
          Length = 919

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
 Frame = +2

Query: 464  REQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMA 643
            +E++  + ++ W   E+E   LRQ+  K L  +K+++Q   ++ + + +E+     QK++
Sbjct: 49   QEKMLQLREKLWQEEEEEALQLRQQKEKALSSLKEQLQRATEEEETRMREQQS---QKLS 105

Query: 644  PLGAEFREGA-----------RQKVQELQEKLSPLAE----ELRDRLRAHVEALRQQLAP 778
             L A+ +  A              +Q L+E+L  L +     L  R R  +E LR++L  
Sbjct: 106  QLRAQVQSSAEADEDKIRAEHEASLQRLREELESLQKAERASLEKRNRQTLEKLREELE- 164

Query: 779  YSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
             + + R++ A   E  +       + + + +E L AL  + +  LE L   L      + 
Sbjct: 165  -ASEKREQAAMNAEKERALRQLRQQLEGERKEALAALEREHREELERLSASLEAKHGEVV 223

Query: 959  VSILAAIDEASKKLNAQ 1009
             S+   ++EA +K  AQ
Sbjct: 224  SSLQKKMEEAQQKEKAQ 240


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,209,224
Number of extensions: 753217
Number of successful extensions: 3540
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3469
Number of HSP's successfully gapped: 12
Length of query: 403
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,829,335
Effective search space: 2666459170
Effective search space used: 2666459170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001037
         (1211 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                        1388   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score = 1388 bits (700), Expect = 0.0
 Identities = 727/737 (98%), Gaps = 1/737 (0%)
 Strand = Plus / Minus

                                                                            
Query: 412      cctgaaactcctggacaactgggacagcctgggcagcacgttcaccaaagtgcgtgagca 471
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289382 cctgaaactcctggacaactgggacagcctgggcagcacgttcaccaaagtgcgtgagca 49289323

                                                                            
Query: 472      gctgggcccagtgacccaggagttctgggacaacctggaaaaggagaccgaggcgctgcg 531
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289322 gctgggcccagtgacccaggagttctgggacaacctggaaaaggagaccgaggcgctgcg 49289263

                                                                            
Query: 532      gcaggagatgagcaaggacctggaggaggtgaagaagaaggtgcagccctacctggacga 591
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289262 gcaggagatgagcaaggacctggaggaggtgaagaagaaggtgcagccctacctggacga 49289203

                                                                            
Query: 592      cttccagaacaagtggcaggaggagatggagacgtaccgccagaagatggcgccgctggg 651
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289202 cttccagaacaagtggcaggaggagatggagacgtaccgccagaagatggcgccgctggg 49289143

                                                                            
Query: 652      cgccgagttccgcgagggcgcgcgccagaaggtgcaggagctgcaggagaagctgagccc 711
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289142 cgccgagttccgcgagggcgcgcgccagaaggtgcaggagctgcaggagaagctgagccc 49289083

                                                                            
Query: 712      gctggccgaggagctccgcgaccgcctgcgcgcccacgtggaggcgctgcgccagcagct 771
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289082 gctggccgaggagctccgcgaccgcctgcgcgcccacgtggaggcgctgcgccagcagct 49289023

                                                                            
Query: 772      ggcgccctacagcgacgacctgcgccagcgcatggccgcccgcttcgaggcgctcaagga 831
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289022 ggcgccctacagcgacgacctgcgccagcgcatggccgcccgcttcgaggcgctcaagga 49288963

                                                                            
Query: 832      gggcggcggcagcctggccgagtaccaggccaaggcccaggagcagctgaaagcgctggg 891
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288962 gggcggcggcagcctggccgagtaccaggccaaggcccaggagcagctgaaagcgctggg 49288903

                                                                            
Query: 892      cgagaaggccaagccggcgctggaggacctccgccagggcctgctgcccgtgctggagaa 951
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288902 cgagaaggccaagccggcgctggaggacctccgccagggcctgctgcccgtgctggagaa 49288843

                                                                            
Query: 952      cctcaaggtcagcatcctggccgccatcgacgaggcctccaagaagctgaacgcccagtg 1011
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288842 cctcaaggtcagcatcctggccgccatcgacgaggcctccaagaagctgaacgcccagtg 49288783

                                                                            
Query: 1012     agacgccctccgcccgcgctcccctcgccatcagttcggcttcttggaataagcagttcc 1071
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288782 agacgccctccgcccgcgctcccctcgccatcagttcggcttcttggaataagcagttcc 49288723

                                                                            
Query: 1072     ggagcaggacgcttgtgatgggttgtannnnnnngtgaaagcttcgatgttgatttttaa 1131
                |||||||||||||||||||||||||||       ||| ||||||||||||||||||||||
Sbjct: 49288722 ggagcaggacgcttgtgatgggttgtatttttttgtg-aagcttcgatgttgatttttaa 49288664

                                 
Query: 1132     acaaaaaaaatttctcc 1148
                |||| ||||| ||||||
Sbjct: 49288663 acaataaaaagttctcc 49288647



 Score =  365 bits (184), Expect = 4e-98
 Identities = 190/192 (98%)
 Strand = Plus / Minus

                                                                            
Query: 5        ctgtttgcccgatgtatttgcccggccccagggacaaagctgatccttgaactctaagtt 64
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290780 ctgtttgcccgatgtatttgcccggccccagggacaaagctgatccttgaactctaagtt 49290721

                                                                            
Query: 65       ccacatctccaggaccagtgagcggcggcaaggcctgggctgggcttatcagcctcccag 124
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290720 ccacatctccaggaccagtgagcggcggcaaggcctgggctgggcttatcagcctcccag 49290661

                                                                            
Query: 125      cccagcccctgcttggcggcataaataggctggaggagaccgggcggtgagagaccgctg 184
                ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 49290660 cccagcccctgcttggcagcataaataggctggaggagaccgggcggtcagagaccgctg 49290601

                            
Query: 185      gcgcatcgaggt 196
                ||||||||||||
Sbjct: 49290600 gcgcatcgaggt 49290589



 Score =  311 bits (157), Expect = 5e-82
 Identities = 157/157 (100%)
 Strand = Plus / Minus

                                                                            
Query: 255      cagggagccaggctcggcatttctggcagcaagatgacccgcagtcaccctgggatcggg 314
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290180 cagggagccaggctcggcatttctggcagcaagatgacccgcagtcaccctgggatcggg 49290121

                                                                            
Query: 315      tgaaggattttgccaccgtgtatgtggatgcgatcaaagacagtggcagagattatgtgg 374
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290120 tgaaggattttgccaccgtgtatgtggatgcgatcaaagacagtggcagagattatgtgg 49290061

                                                     
Query: 375      cccagtttgaagcctccgctttgggaaaacacctcaa 411
                |||||||||||||||||||||||||||||||||||||
Sbjct: 49290060 cccagtttgaagcctccgctttgggaaaacacctcaa 49290024



 Score =  131 bits (66), Expect = 1e-27
 Identities = 66/66 (100%)
 Strand = Plus / Minus

                                                                            
Query: 193      aggtcacccacgtcccttcaggatgaaagccgtggtgctgaccttggctgtgctcttcct 252
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290423 aggtcacccacgtcccttcaggatgaaagccgtggtgctgaccttggctgtgctcttcct 49290364

                      
Query: 253      cacagg 258
                ||||||
Sbjct: 49290363 cacagg 49290358


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,911,591
Number of extensions: 306
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 5
Length of query: 1211
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1190
Effective length of database: 2,808,413,156
Effective search space: 3342011655640
Effective search space used: 3342011655640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)