Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001037
(1211 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776667.2| apolipoprotein A-I preproprotein [Bos taurus]. 445 e-125
Alignment gi|XP_002693069.1| PREDICTED: apolipoprotein A-I-like [Bos taur... 288 7e-78
Alignment gi|XP_002684375.1| PREDICTED: apolipoprotein A-I-like [Bos taur... 288 7e-78
Alignment gi|NP_001032557.1| apolipoprotein A-IV precursor [Bos taurus]. 97 3e-20
Alignment gi|NP_776416.1| apolipoprotein E precursor [Bos taurus]. 54 4e-07
Alignment gi|NP_001076961.1| apolipoprotein A-V [Bos taurus]. 53 5e-07
>ref|NP_776667.2| apolipoprotein A-I preproprotein [Bos taurus].
Length = 265
Score = 445 bits (1144), Expect = e-125
Identities = 222/251 (88%), Positives = 234/251 (93%)
Frame = +2
Query: 257 GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
GSQARHFWQQDDPQS WDRVKDFATVYV+AIKDSGRDYVAQFEASALGK LNLKLLDNWD
Sbjct: 15 GSQARHFWQQDDPQSSWDRVKDFATVYVEAIKDSGRDYVAQFEASALGKQLNLKLLDNWD 74
Query: 437 SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
+L ST +KVREQLGPVTQEFWDNLEKET +LRQEM KDLEEVK+KVQPYLD+FQ KW EE
Sbjct: 75 TLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLDEFQKKWHEE 134
Query: 617 METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
+E YRQK+APLG EFREGARQKVQELQ+KLSPLA+ELRDR RAHVE LRQQLAPYSDDLR
Sbjct: 135 VEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHVETLRQQLAPYSDDLR 194
Query: 797 QRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
QR+ AR EALKEGGGSLAEY AKA EQLKALGEKAKP LEDLRQGLLPVLE+LKVSILAA
Sbjct: 195 QRLTARLEALKEGGGSLAEYHAKASEQLKALGEKAKPVLEDLRQGLLPVLESLKVSILAA 254
Query: 977 IDEASKKLNAQ 1009
IDEASKKLNAQ
Sbjct: 255 IDEASKKLNAQ 265
>ref|XP_002693069.1| PREDICTED: apolipoprotein A-I-like [Bos taurus].
Length = 208
Score = 288 bits (737), Expect = 7e-78
Identities = 145/173 (83%), Positives = 156/173 (90%)
Frame = +2
Query: 410 NLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLD 589
+LKLLDNWD+L ST +KVREQLGPVTQEFWDNLEKET +LRQEM KDLEEVK+KVQPYLD
Sbjct: 24 SLKLLDNWDTLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLD 83
Query: 590 DFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQ 769
+FQ KW EE+E YRQK+APLG EFREGARQKVQELQ+KLSPLA+ELRDR RAH E LRQQ
Sbjct: 84 EFQ-KWHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHAETLRQQ 142
Query: 770 LAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQ 928
LAPYSDDLR R+ AR EALKEGGGSLAEY AKA EQLKALGEKAKPALE LRQ
Sbjct: 143 LAPYSDDLRPRLTARLEALKEGGGSLAEYHAKASEQLKALGEKAKPALEHLRQ 195
>ref|XP_002684375.1| PREDICTED: apolipoprotein A-I-like [Bos taurus].
Length = 208
Score = 288 bits (737), Expect = 7e-78
Identities = 145/173 (83%), Positives = 156/173 (90%)
Frame = +2
Query: 410 NLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLD 589
+LKLLDNWD+L ST +KVREQLGPVTQEFWDNLEKET +LRQEM KDLEEVK+KVQPYLD
Sbjct: 24 SLKLLDNWDTLASTLSKVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLD 83
Query: 590 DFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQ 769
+FQ KW EE+E YRQK+APLG EFREGARQKVQELQ+KLSPLA+ELRDR RAH E LRQQ
Sbjct: 84 EFQ-KWHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPLAQELRDRARAHAETLRQQ 142
Query: 770 LAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQ 928
LAPYSDDLR R+ AR EALKEGGGSLAEY AKA EQLKALGEKAKPALE LRQ
Sbjct: 143 LAPYSDDLRPRLTARLEALKEGGGSLAEYHAKASEQLKALGEKAKPALEHLRQ 195
>ref|NP_001032557.1| apolipoprotein A-IV precursor [Bos taurus].
Length = 380
Score = 97.1 bits (240), Expect = 3e-20
Identities = 60/243 (24%), Positives = 120/243 (49%), Gaps = 4/243 (1%)
Frame = +2
Query: 308 DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
D+V Y + ++ + V + S L + LN D + + ++++L P
Sbjct: 25 DQVATVIWDYFSQLGNNAKKAVEHIQKSELTQQLNTLFQDKLGEVSTYTDDLQKKLVPFA 84
Query: 488 QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
E + L K++E L++E+ K+LE+++ ++ P+ + K + + +Q++ P E R
Sbjct: 85 TELHERLTKDSEKLKEEIRKELEDLRARLLPHATEVSQKIGDNVRELQQRLGPYAEELRT 144
Query: 668 GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
+ Q+L+ +L+P E + +R +++ L+ LAPY+++L+ + R E LK G L
Sbjct: 145 QVDTQAQQLRRQLTPYVERMEKVMRQNLDQLQASLAPYAEELQATVNQRVEELK---GRL 201
Query: 848 AEY----QAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
Y Q K +E ++ L P +D++ L LE L + +E K++A+ +
Sbjct: 202 TPYADQLQTKIEENVEELRRSLAPYAQDVQGKLNHQLEGLAFQMKKHAEELKAKISAKAE 261
Query: 1016 ALR 1024
LR
Sbjct: 262 ELR 264
Score = 65.1 bits (157), Expect = 1e-10
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 4/220 (1%)
Frame = +2
Query: 311 RVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQ 490
R+ AT I D+ R+ Q + L ++ L T E++ V +
Sbjct: 112 RLLPHATEVSQKIGDNVREL--QQRLGPYAEELRTQVDTQAQQLRRQLTPYVERMEKVMR 169
Query: 491 EFWDNLEKE----TEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAE 658
+ D L+ E L+ +++ +EE+K ++ PY D Q K +E +E R+ +AP +
Sbjct: 170 QNLDQLQASLAPYAEELQATVNQRVEELKGRLTPYADQLQTKIEENVEELRRSLAPYAQD 229
Query: 659 FREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGG 838
+ +++ L ++ AEEL+ ++ A E LRQ L P + + E L++
Sbjct: 230 VQGKLNHQLEGLAFQMKKHAEELKAKISAKAEELRQGLVPLVNSVHGSQLGNAEDLQK-- 287
Query: 839 GSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
SLAE ++ +Q++ P E + ++ L+ L+
Sbjct: 288 -SLAELSSRLDQQVEDFRRTVGPYGETFNKAMVQQLDTLR 326
>ref|NP_776416.1| apolipoprotein E precursor [Bos taurus].
Length = 316
Score = 53.5 bits (127), Expect = 4e-07
Identities = 45/196 (22%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Frame = +2
Query: 470 QLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAP- 646
QLGP+ QE + KE +A + + D+E+++ ++ Y + Q + E R +MA
Sbjct: 98 QLGPMAQETQARVSKELQAAQARLGSDMEDLRNRLAQYRSEVQAMLGQSTEELRARMASH 157
Query: 647 ---------------------LGAEFREGARQKVQELQEKLSPLAEELRDR--------- 736
A EGA + + ++E+ PL E+ + R
Sbjct: 158 LRKLPKRLLRDADDLKKRLAVYQAGASEGAERSLSAIRERFGPLVEQGQSRAATLSTLAG 217
Query: 737 --LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPA 910
L EA RQ+L +++ R R + +++ L E AK +EQ + +A+
Sbjct: 218 QPLLERAEAWRQKLHGRLEEVGVRAQDRLDKIRQ---QLEEVHAKVEEQGNQMRLQAEAF 274
Query: 911 LEDLRQGLLPVLENLK 958
LR P++E+++
Sbjct: 275 QARLRSWFEPLVEDMQ 290
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 16/179 (8%)
Frame = +2
Query: 512 KETEALRQEMSKDL----EEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQ 679
+E AL +E K++ EE++ ++ P + Q + +E++ + ++ + R Q
Sbjct: 75 QELTALMEETMKEVKAYKEELEGQLGPMAQETQARVSKELQAAQARLGSDMEDLRNRLAQ 134
Query: 680 KVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAA-----------RFEAL 826
E+Q L EELR R+ +H+ L ++L +DDL++R+A A+
Sbjct: 135 YRSEVQAMLGQSTEELRARMASHLRKLPKRLLRDADDLKKRLAVYQAGASEGAERSLSAI 194
Query: 827 KEGGGSLAEY-QAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKL 1000
+E G L E Q++A G+ E RQ L LE + V +D+ ++L
Sbjct: 195 RERFGPLVEQGQSRAATLSTLAGQPLLERAEAWRQKLHGRLEEVGVRAQDRLDKIRQQL 253
>ref|NP_001076961.1| apolipoprotein A-V [Bos taurus].
Length = 368
Score = 53.1 bits (126), Expect = 5e-07
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 25/208 (12%)
Frame = +2
Query: 446 STFTKVREQLGPVTQEFWD--NLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEM 619
S K E+LGP+ + + L ++ + Q++ ++LEEV+ +++PY+ + + +
Sbjct: 63 SDMDKFLEKLGPLNGQGREIPRLPRDPVGMWQQLQEELEEVRARLEPYMAEVHERVGWNL 122
Query: 620 ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAE------------------ELRDRLRA 745
E R+++ P E E +V ELQE+L + E EL++R+
Sbjct: 123 EGLRRQLQPYTVELMEQVALRVHELQEQLRVVGEGTKAQFLGGVDEARGLLQELQNRVAH 182
Query: 746 HVEALRQQLAPYSDDLRQRMAARFEALKEGG-----GSLAEYQAKAQEQLKALGEKAKPA 910
H ++ PY++ L + + L S A Q L KAK
Sbjct: 183 HTGRVKALFHPYAERLVSGIGHHVQELHRSVAPHAIASPARLSRCVQMLSSKLTLKAKAL 242
Query: 911 LEDLRQGLLPVLENLKVSILAAIDEASK 994
E ++Q L + E L A D+A +
Sbjct: 243 HERIQQNLDQLREELSAFAGARGDDAEE 270
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,636,860
Number of extensions: 1036458
Number of successful extensions: 5648
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5508
Number of HSP's successfully gapped: 9
Length of query: 403
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,207,134
Effective search space: 4233725932
Effective search space used: 4233725932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001037
(1211 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536564.2| PREDICTED: similar to Apolipoprotein A-I precur... 436 e-122
Alignment gi|XP_546510.2| PREDICTED: similar to Apolipoprotein A-IV precu... 96 7e-20
Alignment gi|XP_866043.1| PREDICTED: similar to Apolipoprotein E precurso... 69 1e-11
Alignment gi|XP_866028.1| PREDICTED: similar to Apolipoprotein E precurso... 69 1e-11
Alignment gi|XP_533644.1| PREDICTED: similar to Apolipoprotein E precurso... 69 1e-11
Alignment gi|XP_852597.1| PREDICTED: similar to Apolipoprotein E precurso... 69 1e-11
Alignment gi|XP_546511.1| PREDICTED: similar to Apolipoprotein A-V precur... 57 3e-08
Alignment gi|NP_001104237.1| myosin-9 [Canis lupus familiaris]. 54 3e-07
Alignment gi|XP_532047.2| PREDICTED: similar to centrosomal protein 1 [Ca... 51 2e-06
>ref|XP_536564.2| PREDICTED: similar to Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)
[Canis familiaris].
Length = 266
Score = 436 bits (1121), Expect = e-122
Identities = 216/252 (85%), Positives = 234/252 (92%), Gaps = 1/252 (0%)
Frame = +2
Query: 257 GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
GSQARHFWQQD+PQSPWDRVKD ATVYVDA+KDSGRDYVAQFEASALGK LNLKLLDNWD
Sbjct: 15 GSQARHFWQQDEPQSPWDRVKDLATVYVDAVKDSGRDYVAQFEASALGKQLNLKLLDNWD 74
Query: 437 SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
SL ST TK+REQ+GPVTQEFWDNLEKETE LRQEMSKDLEEVK+KVQPYLDDFQ KWQEE
Sbjct: 75 SLSSTVTKLREQIGPVTQEFWDNLEKETEVLRQEMSKDLEEVKQKVQPYLDDFQKKWQEE 134
Query: 617 METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
+E YRQK+APLG+E REGARQK+QELQEKLSPL EELRDR R HV+ALR QLAPYSDDLR
Sbjct: 135 VELYRQKVAPLGSELREGARQKLQELQEKLSPLGEELRDRARTHVDALRAQLAPYSDDLR 194
Query: 797 QRMAARFEALKEGGG-SLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILA 973
+R+AAR +ALKEGGG SLAEY A+A EQL ALGEKA+PALEDLRQGLLPVLE+ KVS+LA
Sbjct: 195 ERLAARLQALKEGGGASLAEYHARASEQLSALGEKARPALEDLRQGLLPVLESFKVSLLA 254
Query: 974 AIDEASKKLNAQ 1009
AIDEA+KKLNAQ
Sbjct: 255 AIDEATKKLNAQ 266
>ref|XP_546510.2| PREDICTED: similar to Apolipoprotein A-IV precursor (Apo-AIV)
(ApoA-IV) [Canis familiaris].
Length = 407
Score = 95.9 bits (237), Expect = 7e-20
Identities = 70/283 (24%), Positives = 127/283 (44%), Gaps = 44/283 (15%)
Frame = +2
Query: 308 DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
D+V Y + ++ ++ V + S L + LN D + + ++++L P
Sbjct: 48 DQVATVVWDYFSQLSNNAKEAVEHLQQSELTQQLNALFQDKMGQVNTYTDNLQKKLVPFA 107
Query: 488 QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFR- 664
E + L K++E L++E+ K+LEE++ ++ P+ + K + M +Q+ P E R
Sbjct: 108 TELHERLSKDSEKLKEEIRKELEELRARLLPHASEVSQKIGDNMRELQQRFGPYAEELRT 167
Query: 665 ---------------------EGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPY 781
RQ V +L L+P A+EL+ ++ +VE L+ L PY
Sbjct: 168 QVNTHAEQLRNQLTSHAQRMQSALRQNVDDLHSSLTPFADELKAKIDQNVEELKGHLTPY 227
Query: 782 SDDLRQRMAARFEALKEGGGSLAEYQAKAQE-----------QLKALGEKAKPAL----E 916
+D+L+ ++ E L+ SLA Y QE Q+K E+ K + E
Sbjct: 228 TDELKVKIDQNVEELRR---SLAPYAQDVQEKLNHQLEGLAFQMKKNAEELKAKISANAE 284
Query: 917 DLRQGLLPVLENLK-------VSILAAIDEASKKLNAQ*DALR 1024
+LRQ L PV E+++ + ++ E S +L+ Q + R
Sbjct: 285 ELRQRLAPVAEDVRGKLKDNTAGLHKSLAELSSRLDQQVEEFR 327
Score = 74.7 bits (182), Expect = 2e-13
Identities = 53/218 (24%), Positives = 106/218 (48%), Gaps = 2/218 (0%)
Frame = +2
Query: 311 RVKDFATVYVDAIKDSGRDYVAQFE--ASALGKHLNLKLLDNWDSLGSTFTKVREQLGPV 484
R+ A+ I D+ R+ +F A L +N + L S +++ L
Sbjct: 135 RLLPHASEVSQKIGDNMRELQQRFGPYAEELRTQVNTHAEQLRNQLTSHAQRMQSALRQN 194
Query: 485 TQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFR 664
+ +L + L+ ++ +++EE+K + PY D+ + K + +E R+ +AP + +
Sbjct: 195 VDDLHSSLTPFADELKAKIDQNVEELKGHLTPYTDELKVKIDQNVEELRRSLAPYAQDVQ 254
Query: 665 EGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGS 844
E +++ L ++ AEEL+ ++ A+ E LRQ+LAP ++D+R ++ L + S
Sbjct: 255 EKLNHQLEGLAFQMKKNAEELKAKISANAEELRQRLAPVAEDVRGKLKDNTAGLHK---S 311
Query: 845 LAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
LAE ++ +Q++ P E + LL +E L+
Sbjct: 312 LAELSSRLDQQVEEFRRNVGPYGETFNKALLQQVEELR 349
Score = 56.2 bits (134), Expect = 6e-08
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Frame = +2
Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQK 637
++R L P Q+ + L + E L +M K+ EE+K K+ ++ + + E R K
Sbjct: 241 ELRRSLAPYAQDVQEKLNHQLEGLAFQMKKNAEELKAKISANAEELRQRLAPVAEDVRGK 300
Query: 638 MAPLGA-------EFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
+ A E Q+V+E + + P E L VE LRQ+L PY+ D+
Sbjct: 301 LKDNTAGLHKSLAELSSRLDQQVEEFRRNVGPYGETFNKALLQQVEELRQKLGPYAGDME 360
Query: 797 QRMA 808
++
Sbjct: 361 DHLS 364
>ref|XP_866043.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 4
[Canis familiaris].
Length = 323
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
Frame = +2
Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
EQLGP+T E + KE +A + + D+E+V+ ++ Y + Q + EE+
Sbjct: 104 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 163
Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
E ++++A A REGA + V ++E+L PL E+ R+R
Sbjct: 164 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 223
Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
L +AL QQL +++ R E ++E + E + K +EQ + +KA+
Sbjct: 224 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 280
Query: 908 ALEDLRQGLLPVLENLK 958
L+ P+LE+++
Sbjct: 281 FQARLKSWFEPLLEDMQ 297
>ref|XP_866028.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 3
[Canis familiaris].
Length = 336
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
Frame = +2
Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
EQLGP+T E + KE +A + + D+E+V+ ++ Y + Q + EE+
Sbjct: 117 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 176
Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
E ++++A A REGA + V ++E+L PL E+ R+R
Sbjct: 177 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 236
Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
L +AL QQL +++ R E ++E + E + K +EQ + +KA+
Sbjct: 237 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 293
Query: 908 ALEDLRQGLLPVLENLK 958
L+ P+LE+++
Sbjct: 294 FQARLKSWFEPLLEDMQ 310
>ref|XP_533644.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 1
[Canis familiaris].
Length = 323
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
Frame = +2
Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
EQLGP+T E + KE +A + + D+E+V+ ++ Y + Q + EE+
Sbjct: 104 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 163
Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
E ++++A A REGA + V ++E+L PL E+ R+R
Sbjct: 164 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 223
Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
L +AL QQL +++ R E ++E + E + K +EQ + +KA+
Sbjct: 224 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 280
Query: 908 ALEDLRQGLLPVLENLK 958
L+ P+LE+++
Sbjct: 281 FQARLKSWFEPLLEDMQ 297
>ref|XP_852597.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 2
[Canis familiaris].
Length = 336
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 33/197 (16%)
Frame = +2
Query: 467 EQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ---NKWQEEM------ 619
EQLGP+T E + KE +A + + D+E+V+ ++ Y + Q + EE+
Sbjct: 117 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 176
Query: 620 -------------ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDR-------- 736
E ++++A A REGA + V ++E+L PL E+ R+R
Sbjct: 177 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 236
Query: 737 ---LRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKP 907
L +AL QQL +++ R E ++E + E + K +EQ + +KA+
Sbjct: 237 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMRE---QIQEVRVKMEEQADQIRQKAEA 293
Query: 908 ALEDLRQGLLPVLENLK 958
L+ P+LE+++
Sbjct: 294 FQARLKSWFEPLLEDMQ 310
>ref|XP_546511.1| PREDICTED: similar to Apolipoprotein A-V precursor (Apolipoprotein
A5) (ApoAV) (ApoA-V) (Regeneration associated protein 3)
[Canis familiaris].
Length = 367
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/206 (22%), Positives = 94/206 (45%), Gaps = 2/206 (0%)
Frame = +2
Query: 419 LLDNWDSLGSTFTKVREQLGPVTQEFWD--NLEKETEALRQEMSKDLEEVKKKVQPYLDD 592
L D+ + S K E+L P++ + + L + +RQ++ ++L EV+ +++PY+ +
Sbjct: 53 LKDSLEQDLSKMDKFLEKLSPLSGQGREPLGLPPDPVGMRQQLQEELAEVRARLEPYMGE 112
Query: 593 FQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQL 772
+ +E R+++ P AE E +VQELQE+L + E + ++ V+ R+ L
Sbjct: 113 VHEQVGWNLEGLRRQLKPYTAELMEQVALRVQELQEQLRVVGEGTKAQVLGGVDEARELL 172
Query: 773 APYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLEN 952
D + G A ++ AQ + +G +++L + ++P
Sbjct: 173 RELQD----------RVVHHTGRVKALFRPYAQRLVTGIGRH----VQELHRSVVPHAAA 218
Query: 953 LKVSILAAIDEASKKLNAQ*DALRPR 1030
+ + S+KL + +AL R
Sbjct: 219 SPARLSRCVQMLSRKLTLKAEALHAR 244
>ref|NP_001104237.1| myosin-9 [Canis lupus familiaris].
Length = 1960
Score = 53.9 bits (128), Expect = 3e-07
Identities = 63/239 (26%), Positives = 113/239 (47%), Gaps = 22/239 (9%)
Frame = +2
Query: 371 VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
+A+ E A K++ LK K+RE ++ E ++LE E E +
Sbjct: 1089 LARVEEEATQKNMALK-------------KIRELESQIS-ELQEDLESERASRNKAEKQK 1134
Query: 533 QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
+++ ++LE +K +++ LD Q+E+ + R Q++ L E AR ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVNILKKTLEEEARTHEAQIQEMRQ 1192
Query: 701 KLSPLAEELRD------RLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQA 862
K S EEL + R++A++E +Q L ++ R +A + L++G G +
Sbjct: 1193 KHSQAVEELAEQLEQTKRVKANLEKAKQTL----ENERGELANEVKVLQQGKGDSEHKRK 1248
Query: 863 KAQEQLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
KA+ QL+ L GE+ + L D L L+N+ + +L D S KL AL
Sbjct: 1249 KAEAQLQELQVKFTEGERVRTELADKVTKLQVELDNV-MGLLTQSDSKSSKLTKDFSAL 1306
>ref|XP_532047.2| PREDICTED: similar to centrosomal protein 1 [Canis familiaris].
Length = 2589
Score = 51.2 bits (121), Expect = 2e-06
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 7/237 (2%)
Frame = +2
Query: 308 DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDN-WDSLGSTFTKVREQLGPV 484
+ +KD V D++ DS +A GK L +++ + L S ++ ++
Sbjct: 532 NEIKDLEIV-TDSL-DSRDPKHCHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKE 589
Query: 485 TQEFWDNLEKETE---ALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGA 655
T+E D E+ TE A + + KDLE V +Q YL+ + + ++ R+
Sbjct: 590 TEEIKDLEEQLTEGQIAANEALKKDLESVISGLQEYLETVKGQARQAQNECRK------- 642
Query: 656 EFREGARQKVQELQEKLSPLAEELRDRLRA---HVEALRQQLAPYSDDLRQRMAARFEAL 826
+ + + L ++LS + +E RD+L E +R++LA + L+++ +L
Sbjct: 643 -----LQDEKETLLQRLSEVEQE-RDQLEIVAIDAENMRKELAELENALQEQHEVNI-SL 695
Query: 827 KEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKK 997
++ G L+ Y+A+ + QLK +A E+L + L L L+ S L A E K+
Sbjct: 696 QQTQGDLSAYEAELEAQLKIRDAEANQLKEELEK--LRRLSQLEQSALQAELEKEKQ 750
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,005,601
Number of extensions: 1017026
Number of successful extensions: 6099
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5958
Number of HSP's successfully gapped: 15
Length of query: 403
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 298
Effective length of database: 15,374,224
Effective search space: 4581518752
Effective search space used: 4581518752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001037
(1211 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000030.1| apolipoprotein A-I preproprotein [Homo sapiens]. 404 e-113
Alignment gi|NP_000473.2| apolipoprotein A-IV precursor [Homo sapiens]. 95 1e-19
Alignment gi|NP_000032.1| apolipoprotein E precursor [Homo sapiens]. 60 4e-09
Alignment gi|NP_443200.2| apolipoprotein A-V precursor [Homo sapiens]. 55 2e-07
Alignment gi|NP_001160070.1| apolipoprotein A-V precursor [Homo sapiens]. 55 2e-07
Alignment gi|NP_002464.1| myosin-9 [Homo sapiens]. 50 4e-06
>ref|NP_000030.1| apolipoprotein A-I preproprotein [Homo sapiens].
Length = 267
Score = 404 bits (1039), Expect = e-113
Identities = 203/253 (80%), Positives = 222/253 (87%), Gaps = 2/253 (0%)
Frame = +2
Query: 257 GSQARHFWQQDDP-QSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNW 433
GSQARHFWQQD+P QSPWDRVKD ATVYVD +KDSGRDYV+QFE SALGK LNLKLLDNW
Sbjct: 15 GSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNW 74
Query: 434 DSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQE 613
DS+ STF+K+REQLGPVTQEFWDNLEKETE LRQEMSKDLEEVK KVQPYLDDFQ KWQE
Sbjct: 75 DSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQE 134
Query: 614 EMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDL 793
EME YRQK+ PL AE +EGARQK+ ELQEKLSPL EE+RDR RAHV+ALR LAPYSD+L
Sbjct: 135 EMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 194
Query: 794 RQRMAARFEALKEGGGS-LAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSIL 970
RQR+AAR EALKE GG+ LAEY AKA E L L EKAKPALEDLRQGLLPVLE+ KVS L
Sbjct: 195 RQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFL 254
Query: 971 AAIDEASKKLNAQ 1009
+A++E +KKLN Q
Sbjct: 255 SALEEYTKKLNTQ 267
>ref|NP_000473.2| apolipoprotein A-IV precursor [Homo sapiens].
Length = 396
Score = 94.7 bits (234), Expect = 1e-19
Identities = 56/245 (22%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Frame = +2
Query: 308 DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
D+V Y + ++ ++ V + S L + LN D + + ++++L P
Sbjct: 25 DQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFA 84
Query: 488 QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
E + L K++E L++E+ K+LEE++ ++ P+ ++ K + + +Q++ P + R
Sbjct: 85 TELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRT 144
Query: 668 GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
+ ++L+ +L+P A+ + LR + ++L+ L P++D+L+ ++ E LK G L
Sbjct: 145 QVSTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELK---GRL 201
Query: 848 A----EYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
E++ K + ++ L P +D ++ L LE L + +E +++A +
Sbjct: 202 TPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAE 261
Query: 1016 ALRPR 1030
LR R
Sbjct: 262 ELRQR 266
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/179 (26%), Positives = 97/179 (54%), Gaps = 4/179 (2%)
Frame = +2
Query: 434 DSLGSTFTKVREQLGPVTQEFWDNLEKE----TEALRQEMSKDLEEVKKKVQPYLDDFQN 601
+ L T +++ V +E D+L+ + L+ ++ +++EE+K ++ PY D+F+
Sbjct: 151 EQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKV 210
Query: 602 KWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPY 781
K + +E R+ +AP + +E +++ L ++ AEEL+ R+ A E LRQ+LAP
Sbjct: 211 KIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPL 270
Query: 782 SDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
++D+R + E L++ SLAE +Q++ + +P E+ + L+ +E L+
Sbjct: 271 AEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLR 326
Score = 55.8 bits (133), Expect = 8e-08
Identities = 34/131 (25%), Positives = 61/131 (46%)
Frame = +2
Query: 440 LGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEM 619
+ T ++R L P Q+ + L + E L +M K+ EE+K ++
Sbjct: 212 IDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISA-----------SA 260
Query: 620 ETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQ 799
E RQ++APL + R R + LQ+ L+ EL L VE R+++ PY ++ +
Sbjct: 261 EELRQRLAPLAEDVRGNLRGNTEGLQKSLA----ELGGHLDQQVEEFRRRVEPYGENFNK 316
Query: 800 RMAARFEALKE 832
+ + E L++
Sbjct: 317 ALVQQMEQLRQ 327
>ref|NP_000032.1| apolipoprotein E precursor [Homo sapiens].
Length = 317
Score = 60.1 bits (144), Expect = 4e-09
Identities = 50/218 (22%), Positives = 102/218 (46%), Gaps = 3/218 (1%)
Frame = +2
Query: 386 ASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVK 565
+S + + L + + L + +++ EQL PV +E L KE +A + + D+E+V
Sbjct: 71 SSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVC 130
Query: 566 KKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRA 745
++ Y + Q + E R ++A + R+ + +LQ++L+ R+
Sbjct: 131 GRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAER 190
Query: 746 HVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLR 925
+ A+R++L P + R R A GSLA QE+ +A GE+ + +E++
Sbjct: 191 GLSAIRERLGPLVEQGRVRAAT--------VGSLA--GQPLQERAQAWGERLRARMEEMG 240
Query: 926 QGLLPVLENLK---VSILAAIDEASKKLNAQ*DALRPR 1030
L+ +K + A ++E ++++ Q +A + R
Sbjct: 241 SRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQAR 278
>ref|NP_443200.2| apolipoprotein A-V precursor [Homo sapiens].
Length = 366
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/112 (27%), Positives = 60/112 (53%)
Frame = +2
Query: 419 LLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ 598
L D+ + + K E+L P++ L ++ +R+++ ++LEEVK ++QPY+ +
Sbjct: 56 LKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAH 115
Query: 599 NKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVE 754
+E RQ++ P + E +VQELQE+L + E+ + +L V+
Sbjct: 116 ELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKAQLLGGVD 167
Score = 52.4 bits (124), Expect = 8e-07
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Frame = +2
Query: 452 FTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKK---KVQPYLDDFQNKWQEEME 622
F++ G V Q + +E L+ + +DL + K K++P E
Sbjct: 31 FSQTSGDKGRVEQIHQQKMAREPATLKDSLEQDLNNMNKFLEKLRPLSGS---------E 81
Query: 623 TYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQR 802
R P+G R +++++E++ +L P E + + ++E LRQQL PY+ DL ++
Sbjct: 82 APRLPQDPVG--MRRQLQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQ 139
Query: 803 MAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPAL 913
+A R + L QEQL+ +GE K L
Sbjct: 140 VALRVQEL--------------QEQLRVVGEDTKAQL 162
>ref|NP_001160070.1| apolipoprotein A-V precursor [Homo sapiens].
Length = 366
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/112 (27%), Positives = 60/112 (53%)
Frame = +2
Query: 419 LLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQ 598
L D+ + + K E+L P++ L ++ +R+++ ++LEEVK ++QPY+ +
Sbjct: 56 LKDSLEQDLNNMNKFLEKLRPLSGSEAPRLPQDPVGMRRQLQEELEEVKARLQPYMAEAH 115
Query: 599 NKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVE 754
+E RQ++ P + E +VQELQE+L + E+ + +L V+
Sbjct: 116 ELVGWNLEGLRQQLKPYTMDLMEQVALRVQELQEQLRVVGEDTKAQLLGGVD 167
Score = 52.4 bits (124), Expect = 8e-07
Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Frame = +2
Query: 452 FTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKK---KVQPYLDDFQNKWQEEME 622
F++ G V Q + +E L+ + +DL + K K++P E
Sbjct: 31 FSQTSGDKGRVEQIHQQKMAREPATLKDSLEQDLNNMNKFLEKLRPLSGS---------E 81
Query: 623 TYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQR 802
R P+G R +++++E++ +L P E + + ++E LRQQL PY+ DL ++
Sbjct: 82 APRLPQDPVG--MRRQLQEELEEVKARLQPYMAEAHELVGWNLEGLRQQLKPYTMDLMEQ 139
Query: 803 MAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPAL 913
+A R + L QEQL+ +GE K L
Sbjct: 140 VALRVQEL--------------QEQLRVVGEDTKAQL 162
>ref|NP_002464.1| myosin-9 [Homo sapiens].
Length = 1960
Score = 50.1 bits (118), Expect = 4e-06
Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Frame = +2
Query: 371 VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
+A+ E A K++ LK K+RE ++ E ++LE E E +
Sbjct: 1089 LARVEEEAAQKNMALK-------------KIRELESQIS-ELQEDLESERASRNKAEKQK 1134
Query: 533 QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
+++ ++LE +K +++ LD Q+E+ + R Q++ L E A+ ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQ 1192
Query: 701 KLSPLAEELRD------RLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQA 862
K S EEL + R++A++E +Q L ++ R +A + L +G G +
Sbjct: 1193 KHSQAVEELAEQLEQTKRVKANLEKAKQTL----ENERGELANEVKVLLQGKGDSEHKRK 1248
Query: 863 KAQEQLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
K + QL+ L GE+ + L D L L+N+ +L+ D S KL AL
Sbjct: 1249 KVEAQLQELQVKFNEGERVRTELADKVTKLQVELDNV-TGLLSQSDSKSSKLTKDFSAL 1306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,156,566
Number of extensions: 980747
Number of successful extensions: 5708
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5510
Number of HSP's successfully gapped: 10
Length of query: 403
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,835,944
Effective search space: 4421111312
Effective search space used: 4421111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001037
(1211 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033822.2| apolipoprotein A-I preproprotein [Mus musculus]. 342 3e-94
Alignment gi|NP_031494.2| apolipoprotein A-IV precursor [Mus musculus]. 79 9e-15
Alignment gi|NP_033826.2| apolipoprotein E precursor [Mus musculus]. 69 6e-12
Alignment gi|NP_536682.2| apolipoprotein A-V precursor [Mus musculus]. 53 4e-07
Alignment gi|NP_071855.2| myosin-9 isoform 1 [Mus musculus]. 50 3e-06
Alignment gi|NP_001034251.1| CAP-Gly domain-containing linker protein 2 i... 50 5e-06
Alignment gi|NP_034120.2| CAP-Gly domain-containing linker protein 2 isof... 50 5e-06
>ref|NP_033822.2| apolipoprotein A-I preproprotein [Mus musculus].
Length = 264
Score = 342 bits (877), Expect = 3e-94
Identities = 162/251 (64%), Positives = 210/251 (83%)
Frame = +2
Query: 257 GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
GSQA H WQQD+PQS WD+VKDFA VYVDA+KDSGRDYV+QFE+S+LG+ LNL LL+NWD
Sbjct: 15 GSQAWHVWQQDEPQSQWDKVKDFANVYVDAVKDSGRDYVSQFESSSLGQQLNLNLLENWD 74
Query: 437 SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
+LGST ++++E+LGP+T++FWDNLEKET+ +RQEM+KDLEEVK+KVQPYLD+FQ KW+E+
Sbjct: 75 TLGSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKED 134
Query: 617 METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
+E YRQK+APLGAE +E ARQK+QELQ +LSP+AEE RDR+R HV++LR QLAP+S+ +R
Sbjct: 135 VELYRQKVAPLGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMR 194
Query: 797 QRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
+ +A R LK +L EY +A+ LK LGEKA+PALEDLR L+P+LE LK + +
Sbjct: 195 ESLAQRLAELK-SNPTLNEYHTRAKTHLKTLGEKARPALEDLRHSLMPMLETLKTQVQSV 253
Query: 977 IDEASKKLNAQ 1009
ID+AS+ L AQ
Sbjct: 254 IDKASETLTAQ 264
>ref|NP_031494.2| apolipoprotein A-IV precursor [Mus musculus].
Length = 395
Score = 78.6 bits (192), Expect = 9e-15
Identities = 49/243 (20%), Positives = 116/243 (47%), Gaps = 4/243 (1%)
Frame = +2
Query: 308 DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
D+V + Y + ++ ++ V QF+ + + + L+ D + V +L P
Sbjct: 25 DQVANVVWDYFTQLSNNAKEAVEQFQKTDVTQQLSTLFQDKLGDASTYADGVHNKLVPFV 84
Query: 488 QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
+ +L +ETE +++E+ K+LE+++ ++ P+ + + E M+ ++ + P + ++
Sbjct: 85 VQLSGHLAQETERVKEEIKKELEDLRDRMMPHANKVTQTFGENMQKLQEHLKPYAVDLQD 144
Query: 668 GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
+ QE++ +L+P + ++ ++ +V+ L + P + +L+ + E LK G L
Sbjct: 145 QINTQTQEMKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNLKDKFNRNMEELK---GHL 201
Query: 848 A----EYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
E +A + L+ L P +++ L +E L + +E K++A+ D
Sbjct: 202 TPRANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAEELQTKVSAKID 261
Query: 1016 ALR 1024
L+
Sbjct: 262 QLQ 264
Score = 65.1 bits (157), Expect = 1e-10
Identities = 46/223 (20%), Positives = 104/223 (46%), Gaps = 11/223 (4%)
Frame = +2
Query: 395 LGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEM----------- 541
L +HL +D D + + +++ QL P Q +++ + L M
Sbjct: 131 LQEHLKPYAVDLQDQINTQTQEMKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNLKDKF 190
Query: 542 SKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAE 721
++++EE+K + P ++ + + +E R+ +APL +E +++ L ++ AE
Sbjct: 191 NRNMEELKGHLTPRANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAE 250
Query: 722 ELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKA 901
EL+ ++ A ++ L++ LAP +D++ ++ E L++ SL + + ++Q++
Sbjct: 251 ELQTKVSAKIDQLQKNLAPLVEDVQSKVKGNTEGLQK---SLEDLNRQLEQQVEEFRRTV 307
Query: 902 KPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DALRPR 1030
+P E + L+ LE + + E L+ +LR +
Sbjct: 308 EPMGEMFNKALVQQLEQFRQQLGPNSGEVESHLSFLEKSLREK 350
Score = 50.8 bits (120), Expect = 2e-06
Identities = 38/185 (20%), Positives = 92/185 (49%), Gaps = 19/185 (10%)
Frame = +2
Query: 386 ASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVK 565
A+ L ++ L D SL V+E+L + ++K E L+ ++S +++++
Sbjct: 205 ANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAEELQTKVSAKIDQLQ 264
Query: 566 KKVQPYLDDFQNK------------------WQEEMETYRQKMAPLGAEFREGARQKVQE 691
K + P ++D Q+K ++++E +R+ + P+G F + Q++++
Sbjct: 265 KNLAPLVEDVQSKVKGNTEGLQKSLEDLNRQLEQQVEEFRRTVEPMGEMFNKALVQQLEQ 324
Query: 692 LQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAA-RFEALKEGGGSLAEYQAKA 868
+++L P + E+ L ++LR+++ + L ++ + + +AL + + Q +A
Sbjct: 325 FRQQLGPNSGEVESHLSFLEKSLREKVNSFMSTLEKKGSPDQPQALPLPEQAQEQAQEQA 384
Query: 869 QEQLK 883
QEQ++
Sbjct: 385 QEQVQ 389
>ref|NP_033826.2| apolipoprotein E precursor [Mus musculus].
Length = 311
Score = 69.3 bits (168), Expect = 6e-12
Identities = 49/234 (20%), Positives = 109/234 (46%), Gaps = 7/234 (2%)
Frame = +2
Query: 278 WQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFT 457
WQ + P W++ + Y+ ++ + ++S + + L + D + +
Sbjct: 30 WQSNQP---WEQALNRFWDYLRWVQTLSDQVQEELQSSQVTQELTALMEDTMTEVKAYKK 86
Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQK 637
++ EQLGPV +E L KE +A + + D+E+++ ++ Y ++ + E R +
Sbjct: 87 ELEEQLGPVAEETRARLGKEVQAAQARLGADMEDLRNRLGQYRNEVHTMLGQSTEEIRAR 146
Query: 638 MAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARF 817
++ + R+ + ++LQ++L+ R+ V A+R++L P + RQR A
Sbjct: 147 LSTHLRKMRKRLMRDAEDLQKRLAVYKAGAREGAERGVSAIRERLGPLVEQGRQRTA--- 203
Query: 818 EALKEGGGSLAEYQAKAQE-------QLKALGEKAKPALEDLRQGLLPVLENLK 958
G G+ + +AQ +L+ +G +A+ LE++R+ + V ++
Sbjct: 204 ---NLGAGAAQPLRDRAQAFGDRIRGRLEEVGNQARDRLEEVREHMEEVRSKME 254
>ref|NP_536682.2| apolipoprotein A-V precursor [Mus musculus].
Length = 368
Score = 53.1 bits (126), Expect = 4e-07
Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 10/190 (5%)
Frame = +2
Query: 467 EQLGPVTQEFWDN--LEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKM 640
E+LGP+ + L ++ E +R+++ ++L EV +++PY+ + +E RQ++
Sbjct: 65 EKLGPLRGPGKEPPLLAQDPEGIRKQLQQELGEVSSRLEPYMAAKHQQVGWNLEGLRQQL 124
Query: 641 APLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEA-------LRQQLAPYSDDLRQ 799
P AE E VQELQE+L + E+ + +L V+ ++ ++ ++D +++
Sbjct: 125 KPYTAELMEQVGLSVQELQEQLRVVGEDTKAQLLGGVDEALNLLQDMQSRVLHHTDRVKE 184
Query: 800 RMAARFEALKEG-GGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
E L G G + E A + ++ L L ++L SI
Sbjct: 185 LFHPYAERLVTGIGHHVQELHRSVAPHAAASPARLSRCVQTLSHKLTRKAKDLHTSIQRN 244
Query: 977 IDEASKKLNA 1006
+D+ +L+A
Sbjct: 245 LDQLRDELSA 254
>ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus].
Length = 1960
Score = 50.4 bits (119), Expect = 3e-06
Identities = 60/235 (25%), Positives = 109/235 (46%), Gaps = 18/235 (7%)
Frame = +2
Query: 371 VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
+A+ E A K++ LK K+RE L E ++LE E E +
Sbjct: 1089 LARVEEEAAQKNMALK-------------KIRE-LETQISELQEDLESERASRNKAEKQK 1134
Query: 533 QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
+++ ++LE +K +++ LD Q+E+ + R Q+++ L + A+ ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVSILKKTLEDEAKTHEAQIQEMRQ 1192
Query: 701 KLSPLAEELRDRLR--AHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQE 874
K S EEL D+L V+A ++ ++ R +A +AL +G G + K +
Sbjct: 1193 KHSQAVEELADQLEQTKRVKATLEKAKQTLENERGELANEVKALLQGKGDSEHKRKKVEA 1252
Query: 875 QLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
QL+ L GE+ + L D L L+++ +L+ D S KL AL
Sbjct: 1253 QLQELQVKFSEGERVRTELADKVTKLQVELDSV-TGLLSQSDSKSSKLTKDFSAL 1306
>ref|NP_001034251.1| CAP-Gly domain-containing linker protein 2 isoform b [Mus musculus].
Length = 1012
Score = 49.7 bits (117), Expect = 5e-06
Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 20/201 (9%)
Frame = +2
Query: 410 NLKLLDNW----DSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQ 577
N+ L+DNW DSL S K E L +KE E+ +E +K + Q
Sbjct: 572 NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIG----ELKALVEGIKMEHQ 627
Query: 578 PYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEA 757
L + Q K ++ET A G E +EG RQK+QE+QE+L+ L + R++L
Sbjct: 628 LELGNLQAK--HDLET-----AMHGKE-KEGLRQKLQEVQEELAGLQQHWREQLEEQASQ 679
Query: 758 LRQQLAPYSDDLR----------------QRMAARFEALKEGGGSLAEYQAKAQEQLKAL 889
R +L D R + A E LKE SLAE + E L+
Sbjct: 680 HRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKE-QISLAEKKMLDYEMLQRA 738
Query: 890 GEKAKPALEDLRQGLLPVLEN 952
+++ E LR+ LL V EN
Sbjct: 739 EAQSRQEAERLREKLL-VAEN 758
>ref|NP_034120.2| CAP-Gly domain-containing linker protein 2 isoform a [Mus musculus].
Length = 1047
Score = 49.7 bits (117), Expect = 5e-06
Identities = 62/201 (30%), Positives = 88/201 (43%), Gaps = 20/201 (9%)
Frame = +2
Query: 410 NLKLLDNW----DSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQ 577
N+ L+DNW DSL S K E L +KE E+ +E +K + Q
Sbjct: 607 NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIG----ELKALVEGIKMEHQ 662
Query: 578 PYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEA 757
L + Q K ++ET A G E +EG RQK+QE+QE+L+ L + R++L
Sbjct: 663 LELGNLQAK--HDLET-----AMHGKE-KEGLRQKLQEVQEELAGLQQHWREQLEEQASQ 714
Query: 758 LRQQLAPYSDDLR----------------QRMAARFEALKEGGGSLAEYQAKAQEQLKAL 889
R +L D R + A E LKE SLAE + E L+
Sbjct: 715 HRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKE-QISLAEKKMLDYEMLQRA 773
Query: 890 GEKAKPALEDLRQGLLPVLEN 952
+++ E LR+ LL V EN
Sbjct: 774 EAQSRQEAERLREKLL-VAEN 793
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,228,627
Number of extensions: 806983
Number of successful extensions: 4592
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4447
Number of HSP's successfully gapped: 9
Length of query: 403
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 299
Effective length of database: 12,493,815
Effective search space: 3735650685
Effective search space used: 3735650685
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001037
(1211 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999563.1| apolipoprotein A-I preproprotein [Sus scrofa]. 484 e-137
Alignment gi|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa]. 101 1e-21
Alignment gi|NP_999473.1| apolipoprotein E precursor [Sus scrofa]. 69 7e-12
Alignment gi|NP_001152780.1| apolipoprotein A-V [Sus scrofa]. 65 8e-11
Alignment gi|XP_003126114.2| PREDICTED: myosin-9 [Sus scrofa]. 50 3e-06
Alignment gi|XP_003353396.1| PREDICTED: cingulin-like protein 1-like [Sus... 49 4e-06
Alignment gi|XP_003129941.2| PREDICTED: centrosomal protein of 164 kDa [S... 49 6e-06
>ref|NP_999563.1| apolipoprotein A-I preproprotein [Sus scrofa].
Length = 264
Score = 484 bits (1245), Expect = e-137
Identities = 246/251 (98%), Positives = 247/251 (98%)
Frame = +2
Query: 257 GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 436
GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD
Sbjct: 15 GSQARHFWQQDDPQSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWD 74
Query: 437 SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 616
SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE
Sbjct: 75 SLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEE 134
Query: 617 METYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLR 796
METYRQKM PLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHV ALRQ +APYSDDLR
Sbjct: 135 METYRQKM-PLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVAALRQHVAPYSDDLR 193
Query: 797 QRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 976
QRMAARFEALKEGG SLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA
Sbjct: 194 QRMAARFEALKEGGDSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAA 253
Query: 977 IDEASKKLNAQ 1009
IDEASKKLNAQ
Sbjct: 254 IDEASKKLNAQ 264
Score = 53.1 bits (126), Expect = 3e-07
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Frame = +2
Query: 689 ELQEKLSPLAEELRDRLRAHVEALRQQLA-----------PYSDDLRQRMAARFEALKEG 835
+++E+L P+ +E D L EALRQ+++ PY DD + + E ++
Sbjct: 82 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQK 141
Query: 836 GGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
AE++ A+++++ L EK P E+LR L + L+ + D+ +++ A+ +
Sbjct: 142 MPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVAALRQHVAPYSDDLRQRMAARFE 201
Query: 1016 ALR 1024
AL+
Sbjct: 202 ALK 204
>ref|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa].
Length = 382
Score = 101 bits (251), Expect = 1e-21
Identities = 62/245 (25%), Positives = 118/245 (48%), Gaps = 4/245 (1%)
Frame = +2
Query: 308 DRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVT 487
D+V Y + + + V + S L + LN D + + ++++L P
Sbjct: 25 DQVATVMWDYFSQLGSNAKKAVEHLQKSELTQQLNTLFQDKLGEVNTYTEDLQKKLVPFA 84
Query: 488 QEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFRE 667
E + L K++E L++E+ ++LEE++ ++ P+ + K + + +Q++ P R
Sbjct: 85 TELHERLTKDSEKLKEEIRRELEELRARLLPHATEVSQKIGDNVRELQQRLGPFTGGLRT 144
Query: 668 GARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSL 847
+VQ+LQ +L P AE + LR ++ L +APY+D+ + ++ E LK GSL
Sbjct: 145 QVNTQVQQLQRQLKPYAERMESVLRQNIRNLEASVAPYADEFKAKIDQNVEELK---GSL 201
Query: 848 AEY----QAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*D 1015
Y +AK + ++ L P +D+++ L LE L + +E K++A D
Sbjct: 202 TPYAEELKAKIDQNVEELRRSLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANAD 261
Query: 1016 ALRPR 1030
LR +
Sbjct: 262 ELRQK 266
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/168 (23%), Positives = 90/168 (53%), Gaps = 4/168 (2%)
Frame = +2
Query: 467 EQLGPVTQEFWDNLEKET----EALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQ 634
E++ V ++ NLE + + ++ +++EE+K + PY ++ + K + +E R+
Sbjct: 162 ERMESVLRQNIRNLEASVAPYADEFKAKIDQNVEELKGSLTPYAEELKAKIDQNVEELRR 221
Query: 635 KMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAAR 814
+AP + +E +++ L ++ AEEL+ ++ A+ + LRQ+L P ++++ +
Sbjct: 222 SLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGN 281
Query: 815 FEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
E L++ SL E ++ +Q++ K +P E + L+ +E+L+
Sbjct: 282 TEGLQK---SLLELRSHLDQQVEEFRLKVEPYGETFNKALVQQVEDLR 326
Score = 55.8 bits (133), Expect = 5e-08
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 29/172 (16%)
Frame = +2
Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKW---------- 607
++R L P Q+ + L + E L +M K EE+K K+ D+ + K
Sbjct: 218 ELRRSLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANADELRQKLVPVAENVHGH 277
Query: 608 -------------------QEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELR 730
+++E +R K+ P G F + Q+V++L++KL PLA +
Sbjct: 278 LKGNTEGLQKSLLELRSHLDQQVEEFRLKVEPYGETFNKALVQQVEDLRQKLGPLAGD-- 335
Query: 731 DRLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKA 886
+ H+ L + DLR ++ F LKE AQE+ +A
Sbjct: 336 --VEGHLSFLEK-------DLRDKVNTFFSTLKEEASQGQSQALPAQEKAQA 378
Score = 50.8 bits (120), Expect = 1e-06
Identities = 32/130 (24%), Positives = 59/130 (45%)
Frame = +2
Query: 380 FEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEE 559
F+ + L K+ N D L V E + + + L+K LR + + +EE
Sbjct: 243 FQMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGNTEGLQKSLLELRSHLDQQVEE 302
Query: 560 VKKKVQPYLDDFQNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRL 739
+ KV+PY + F +++E RQK+ PL +++ LS L ++LRD++
Sbjct: 303 FRLKVEPYGETFNKALVQQVEDLRQKLGPLAG-----------DVEGHLSFLEKDLRDKV 351
Query: 740 RAHVEALRQQ 769
L+++
Sbjct: 352 NTFFSTLKEE 361
>ref|NP_999473.1| apolipoprotein E precursor [Sus scrofa].
Length = 317
Score = 68.6 bits (166), Expect = 7e-12
Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 4/257 (1%)
Frame = +2
Query: 272 HFWQQDDP---QSPWDRVKDFATVYVDAIKDSGRDYVAQFEASALGKHLNLKLLDNWDSL 442
H W ++ PW++ Y+ ++ + ++ + + L + ++ +
Sbjct: 29 HVWWEESKWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEV 88
Query: 443 GSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEME 622
+ ++ QLGPVTQE L KE +A + + D+E+V+ ++ Y + N + E
Sbjct: 89 KAYREELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTE 148
Query: 623 TYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQR 802
R ++A R+ + ++LQ++L+ LR+ V ALR++L P + R R
Sbjct: 149 ELRSRLASHLRNVRKRLVRDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLR 208
Query: 803 MAARFEALKEGGGSLAE-YQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLKVSILAAI 979
A + AE + K + +L+ +G + + L+++R L + +
Sbjct: 209 AATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMRDEL--------EEVRTKV 260
Query: 980 DEASKKLNAQ*DALRPR 1030
+E +L Q +A + R
Sbjct: 261 EEQGSQLRLQAEAFQAR 277
>ref|NP_001152780.1| apolipoprotein A-V [Sus scrofa].
Length = 363
Score = 65.1 bits (157), Expect = 8e-11
Identities = 35/116 (30%), Positives = 65/116 (56%)
Frame = +2
Query: 416 KLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDF 595
+L D+ + + K E+LGP+ + L ++ +RQ++ K+LEEV+K+++PY+ +
Sbjct: 55 RLKDSLEQNLNNMDKFLEKLGPL-----NGLPQDPVGMRQQLQKELEEVRKRLEPYMTEM 109
Query: 596 QNKWQEEMETYRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEALR 763
+ +E RQ++ P E E +VQ+LQE+L + E+ + +L VE R
Sbjct: 110 HERVSWNLEGLRQQLQPYTTELMEQVALRVQDLQEQLRVVGEDTKAQLLGGVEEAR 165
Score = 57.4 bits (137), Expect = 2e-08
Identities = 44/170 (25%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Frame = +2
Query: 494 FWD-------NLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMAPLG 652
FWD N + + +Q+++++ +K ++ L++ M+ + +K+ PL
Sbjct: 27 FWDYFSQSSGNKGRVEQIQQQKLAQEPTRLKDSLEQNLNN--------MDKFLEKLGPLN 78
Query: 653 A------EFREGARQKVQELQEKLSPLAEELRDRLRAHVEALRQQLAPYSDDLRQRMAAR 814
R+ +++++E++++L P E+ +R+ ++E LRQQL PY+ +L +++A R
Sbjct: 79 GLPQDPVGMRQQLQKELEEVRKRLEPYMTEMHERVSWNLEGLRQQLQPYTTELMEQVALR 138
Query: 815 FEALKEGGGSLAEYQAKAQEQLKALGEKAKPAL----EDLRQGLLPVLEN 952
+ L QEQL+ +GE K L E+ R GLL L+N
Sbjct: 139 VQDL--------------QEQLRVVGEDTKAQLLGGVEEAR-GLLQELQN 173
>ref|XP_003126114.2| PREDICTED: myosin-9 [Sus scrofa].
Length = 1984
Score = 49.7 bits (117), Expect = 3e-06
Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 22/239 (9%)
Frame = +2
Query: 371 VAQFEASALGKHLNLKLLDNWDSLGSTFTKVREQLGPVTQEFWDNLEKE------TEALR 532
+A+ E A K++ LK K+RE ++ E ++LE E E +
Sbjct: 1089 LARVEEEAAQKNMALK-------------KIRELESQIS-ELQEDLESERAARNKAEKQK 1134
Query: 533 QEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYR-QKMAPLGAEFREGARQ---KVQELQE 700
+++ ++LE +K +++ LD Q+E+ + R Q++ L E A+ ++QE+++
Sbjct: 1135 RDLGEELEALKTELEDTLDS--TAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQ 1192
Query: 701 KLSPLAEELRD------RLRAHVEALRQQLAPYSDDLRQRMAARFEALKEGGGSLAEYQA 862
K S EEL + R++A++E +Q L ++ R +A + L +G G +
Sbjct: 1193 KHSQAVEELAEQLEQTKRVKANLEKAKQTL----ENERGELANEVKVLLQGKGDSEHKRK 1248
Query: 863 KAQEQLKAL------GEKAKPALEDLRQGLLPVLENLKVSILAAIDEASKKLNAQ*DAL 1021
K + QL+ + GE+ + L D L L+N+ +L D S KL+ AL
Sbjct: 1249 KVEAQLQEMQVKVTEGERVRTELADKVSKLQVELDNV-TGLLTQSDSKSSKLSKDFSAL 1306
>ref|XP_003353396.1| PREDICTED: cingulin-like protein 1-like [Sus scrofa].
Length = 690
Score = 49.3 bits (116), Expect = 4e-06
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 6/148 (4%)
Frame = +2
Query: 458 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKK----KVQPYLDDFQNKWQEEMET 625
++R + E W +L+K E L++EM+ D+ EV + ++Q LD+++ K + E+
Sbjct: 319 QLRRLKNEMENERW-HLDKTIEKLQKEMA-DIVEVSRTSTLELQNQLDEYKEKNRRELAE 376
Query: 626 YRQKMAPLGAEFREGARQKVQELQEKLSPLAEELRDRLRAHVEAL--RQQLAPYSDDLRQ 799
++++ E E +R ++Q+++ L EELRD RA EAL RQ L DL
Sbjct: 377 MQRQLKEKTLE-AEKSRLNAVKMQDEMRLLEEELRDYQRAQEEALTKRQLLEQTLKDLEY 435
Query: 800 RMAARFEALKEGGGSLAEYQAKAQEQLK 883
+ A+ LK+ G L + QL+
Sbjct: 436 ELEAK-SHLKDDRGRLVKQMEDKMSQLE 462
>ref|XP_003129941.2| PREDICTED: centrosomal protein of 164 kDa [Sus scrofa].
Length = 919
Score = 48.9 bits (115), Expect = 6e-06
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Frame = +2
Query: 464 REQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQEEMETYRQKMA 643
+E++ + ++ W E+E LRQ+ K L +K+++Q ++ + + +E+ QK++
Sbjct: 49 QEKMLQLREKLWQEEEEEALQLRQQKEKALSSLKEQLQRATEEEETRMREQQS---QKLS 105
Query: 644 PLGAEFREGA-----------RQKVQELQEKLSPLAE----ELRDRLRAHVEALRQQLAP 778
L A+ + A +Q L+E+L L + L R R +E LR++L
Sbjct: 106 QLRAQVQSSAEADEDKIRAEHEASLQRLREELESLQKAERASLEKRNRQTLEKLREELE- 164
Query: 779 YSDDLRQRMAARFEALKEGGGSLAEYQAKAQEQLKALGEKAKPALEDLRQGLLPVLENLK 958
+ + R++ A E + + + + +E L AL + + LE L L +
Sbjct: 165 -ASEKREQAAMNAEKERALRQLRQQLEGERKEALAALEREHREELERLSASLEAKHGEVV 223
Query: 959 VSILAAIDEASKKLNAQ 1009
S+ ++EA +K AQ
Sbjct: 224 SSLQKKMEEAQQKEKAQ 240
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,209,224
Number of extensions: 753217
Number of successful extensions: 3540
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3469
Number of HSP's successfully gapped: 12
Length of query: 403
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,829,335
Effective search space: 2666459170
Effective search space used: 2666459170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001037
(1211 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1388 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1388 bits (700), Expect = 0.0
Identities = 727/737 (98%), Gaps = 1/737 (0%)
Strand = Plus / Minus
Query: 412 cctgaaactcctggacaactgggacagcctgggcagcacgttcaccaaagtgcgtgagca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289382 cctgaaactcctggacaactgggacagcctgggcagcacgttcaccaaagtgcgtgagca 49289323
Query: 472 gctgggcccagtgacccaggagttctgggacaacctggaaaaggagaccgaggcgctgcg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289322 gctgggcccagtgacccaggagttctgggacaacctggaaaaggagaccgaggcgctgcg 49289263
Query: 532 gcaggagatgagcaaggacctggaggaggtgaagaagaaggtgcagccctacctggacga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289262 gcaggagatgagcaaggacctggaggaggtgaagaagaaggtgcagccctacctggacga 49289203
Query: 592 cttccagaacaagtggcaggaggagatggagacgtaccgccagaagatggcgccgctggg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289202 cttccagaacaagtggcaggaggagatggagacgtaccgccagaagatggcgccgctggg 49289143
Query: 652 cgccgagttccgcgagggcgcgcgccagaaggtgcaggagctgcaggagaagctgagccc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289142 cgccgagttccgcgagggcgcgcgccagaaggtgcaggagctgcaggagaagctgagccc 49289083
Query: 712 gctggccgaggagctccgcgaccgcctgcgcgcccacgtggaggcgctgcgccagcagct 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289082 gctggccgaggagctccgcgaccgcctgcgcgcccacgtggaggcgctgcgccagcagct 49289023
Query: 772 ggcgccctacagcgacgacctgcgccagcgcatggccgcccgcttcgaggcgctcaagga 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49289022 ggcgccctacagcgacgacctgcgccagcgcatggccgcccgcttcgaggcgctcaagga 49288963
Query: 832 gggcggcggcagcctggccgagtaccaggccaaggcccaggagcagctgaaagcgctggg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288962 gggcggcggcagcctggccgagtaccaggccaaggcccaggagcagctgaaagcgctggg 49288903
Query: 892 cgagaaggccaagccggcgctggaggacctccgccagggcctgctgcccgtgctggagaa 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288902 cgagaaggccaagccggcgctggaggacctccgccagggcctgctgcccgtgctggagaa 49288843
Query: 952 cctcaaggtcagcatcctggccgccatcgacgaggcctccaagaagctgaacgcccagtg 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288842 cctcaaggtcagcatcctggccgccatcgacgaggcctccaagaagctgaacgcccagtg 49288783
Query: 1012 agacgccctccgcccgcgctcccctcgccatcagttcggcttcttggaataagcagttcc 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49288782 agacgccctccgcccgcgctcccctcgccatcagttcggcttcttggaataagcagttcc 49288723
Query: 1072 ggagcaggacgcttgtgatgggttgtannnnnnngtgaaagcttcgatgttgatttttaa 1131
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 49288722 ggagcaggacgcttgtgatgggttgtatttttttgtg-aagcttcgatgttgatttttaa 49288664
Query: 1132 acaaaaaaaatttctcc 1148
|||| ||||| ||||||
Sbjct: 49288663 acaataaaaagttctcc 49288647
Score = 365 bits (184), Expect = 4e-98
Identities = 190/192 (98%)
Strand = Plus / Minus
Query: 5 ctgtttgcccgatgtatttgcccggccccagggacaaagctgatccttgaactctaagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290780 ctgtttgcccgatgtatttgcccggccccagggacaaagctgatccttgaactctaagtt 49290721
Query: 65 ccacatctccaggaccagtgagcggcggcaaggcctgggctgggcttatcagcctcccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290720 ccacatctccaggaccagtgagcggcggcaaggcctgggctgggcttatcagcctcccag 49290661
Query: 125 cccagcccctgcttggcggcataaataggctggaggagaccgggcggtgagagaccgctg 184
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 49290660 cccagcccctgcttggcagcataaataggctggaggagaccgggcggtcagagaccgctg 49290601
Query: 185 gcgcatcgaggt 196
||||||||||||
Sbjct: 49290600 gcgcatcgaggt 49290589
Score = 311 bits (157), Expect = 5e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 255 cagggagccaggctcggcatttctggcagcaagatgacccgcagtcaccctgggatcggg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290180 cagggagccaggctcggcatttctggcagcaagatgacccgcagtcaccctgggatcggg 49290121
Query: 315 tgaaggattttgccaccgtgtatgtggatgcgatcaaagacagtggcagagattatgtgg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290120 tgaaggattttgccaccgtgtatgtggatgcgatcaaagacagtggcagagattatgtgg 49290061
Query: 375 cccagtttgaagcctccgctttgggaaaacacctcaa 411
|||||||||||||||||||||||||||||||||||||
Sbjct: 49290060 cccagtttgaagcctccgctttgggaaaacacctcaa 49290024
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 193 aggtcacccacgtcccttcaggatgaaagccgtggtgctgaccttggctgtgctcttcct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49290423 aggtcacccacgtcccttcaggatgaaagccgtggtgctgaccttggctgtgctcttcct 49290364
Query: 253 cacagg 258
||||||
Sbjct: 49290363 cacagg 49290358
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,911,591
Number of extensions: 306
Number of successful extensions: 306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 5
Length of query: 1211
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1190
Effective length of database: 2,808,413,156
Effective search space: 3342011655640
Effective search space used: 3342011655640
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)