Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001038
(1385 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus]. 523 e-148
>ref|NP_001012700.1| 60S acidic ribosomal protein P0 [Bos taurus].
Length = 318
Score = 523 bits (1346), Expect = e-148
Identities = 271/307 (88%), Positives = 276/307 (89%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFXXXXXXXXSHHXXXXXXXXXPQPRL 1191
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF + P ++
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAP-AKV 299
Query: 1192 KQKEESE 1212
+ KEESE
Sbjct: 300 EAKEESE 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,097,968
Number of extensions: 1543201
Number of successful extensions: 5833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5777
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001038
(1385 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal prot... 523 e-148
Alignment gi|XP_851422.1| PREDICTED: similar to 60S acidic ribosomal prot... 485 e-137
>ref|XP_535894.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
1 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_858251.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
7 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_858205.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
6 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_849185.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
2 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_863145.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
14 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_863120.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
13 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_863097.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
12 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_863073.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
11 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_850994.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
2 [Canis familiaris].
Length = 317
Score = 523 bits (1346), Expect = e-148
Identities = 266/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|XP_851422.1| PREDICTED: similar to 60S acidic ribosomal protein P0 (L10E) isoform
1 [Canis familiaris].
Length = 316
Score = 485 bits (1249), Expect = e-137
Identities = 250/275 (90%), Positives = 254/275 (92%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSL AVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLCRNAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDL+EIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLSEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPA NTGLGPEKT FFQALGITTKI RGTIEILS VQLIKT DK GAS+ATLLN+LNI
Sbjct: 121 VTVPALNTGLGPEKTFFFQALGITTKIFRGTIEILSYVQLIKTRDKAGASQATLLNILNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFS GLIIQQVFDNGSIYN EVLDITEETLHSRFLEGVRN+ASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSSGLIIQQVFDNGSIYNTEVLDITEETLHSRFLEGVRNIASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYK VLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKWVLALSVETDYTFPLAEKVKAFLADPSAF 275
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,643,756
Number of extensions: 1306239
Number of successful extensions: 5700
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 5657
Number of HSP's successfully gapped: 32
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001038
(1385 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens]. 522 e-148
Alignment gi|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens]. 522 e-148
Alignment gi|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens]. 52 1e-06
>ref|NP_000993.1| 60S acidic ribosomal protein P0 [Homo sapiens].
Length = 317
Score = 522 bits (1345), Expect = e-148
Identities = 265/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|NP_444505.1| 60S acidic ribosomal protein P0 [Homo sapiens].
Length = 317
Score = 522 bits (1345), Expect = e-148
Identities = 265/275 (96%), Positives = 266/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGL+IQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>ref|NP_057267.2| mRNA turnover protein 4 homolog [Homo sapiens].
Length = 239
Score = 52.0 bits (123), Expect = 1e-06
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 5/193 (2%)
Frame = +1
Query: 319 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 498
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 499 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 672
E L ++ +RG VG +FT E+ + K TV
Sbjct: 82 SDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWF--TKYTEMDYARAGNKAAFTVSLDP 139
Query: 673 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 843
L S + LG+ T + RG + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKLFGYEMAE 199
Query: 844 FGLIIQQVFDNGS 882
F + I+ ++D+ S
Sbjct: 200 FKVTIKYMWDSQS 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,717,339
Number of extensions: 1267211
Number of successful extensions: 5602
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5558
Number of HSP's successfully gapped: 3
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001038
(1385 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus]. 516 e-146
Alignment gi|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like... 513 e-145
Alignment gi|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-l... 513 e-145
Alignment gi|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog i... 50 3e-06
Alignment gi|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [... 50 5e-06
>ref|NP_031501.1| 60S acidic ribosomal protein P0 [Mus musculus].
Length = 317
Score = 516 bits (1330), Expect = e-146
Identities = 262/275 (95%), Positives = 264/275 (96%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVET+YTFPL EKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETEYTFPLTEKVKAFLADPSAF 275
>ref|XP_996602.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
Length = 317
Score = 513 bits (1320), Expect = e-145
Identities = 261/275 (94%), Positives = 263/275 (95%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAF 275
>ref|XP_003086742.1| PREDICTED: 60S acidic ribosomal protein P0-like [Mus musculus].
Length = 317
Score = 513 bits (1320), Expect = e-145
Identities = 261/275 (94%), Positives = 263/275 (95%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKIS GTIEILSDVQLIKTGDKV ASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITE+ LHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 1116
IINGYKRVLALSVET+YTFPLAEKVKAFLADPSAF
Sbjct: 241 IINGYKRVLALSVETEYTFPLAEKVKAFLADPSAF 275
>ref|XP_001480610.1| PREDICTED: mRNA turnover protein 4 homolog isoform 2 [Mus
musculus].
Length = 239
Score = 50.4 bits (119), Expect = 3e-06
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Frame = +1
Query: 319 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 498
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 499 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 672
E L ++ +RG VG +FT E+ + K +TV
Sbjct: 82 SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139
Query: 673 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 843
L S + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYEMAE 199
Query: 844 FGLIIQQVFD 873
F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209
>ref|XP_001004798.1| PREDICTED: mRNA turnover protein 4 homolog [Mus musculus].
Length = 239
Score = 49.7 bits (117), Expect = 5e-06
Identities = 43/190 (22%), Positives = 80/190 (42%), Gaps = 5/190 (2%)
Frame = +1
Query: 319 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 498
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+
Sbjct: 23 KQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 499 --ENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 672
E L ++ +RG VG +FT E+ + K +TV
Sbjct: 82 SDEYKDDLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYTEMDFARAGNKATLTVSLDP 139
Query: 673 TGLGPEKTSF---FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFS 843
L S + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 140 GPLKQFPHSMELQLRQLGLPTALEKGVVTLLSDYEVCKEGDVLTPEQARILKLFGDEMAE 199
Query: 844 FGLIIQQVFD 873
F + I+ ++D
Sbjct: 200 FKVTIKYMWD 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,702,696
Number of extensions: 1081193
Number of successful extensions: 4914
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4876
Number of HSP's successfully gapped: 5
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001038
(1385 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa]. 523 e-149
Alignment gi|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa]. 49 5e-06
>ref|NP_001092068.1| 60S acidic ribosomal protein P0 [Sus scrofa].
Length = 318
Score = 523 bits (1347), Expect = e-149
Identities = 272/307 (88%), Positives = 276/307 (89%)
Frame = +1
Query: 292 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 471
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 472 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCE 651
MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVP PCE
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE 120
Query: 652 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 831
VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
Sbjct: 121 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI 180
Query: 832 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 1011
SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
Sbjct: 181 SPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS 240
Query: 1012 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFXXXXXXXXSHHXXXXXXXXXPQPRL 1191
IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF + P ++
Sbjct: 241 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAP-AKV 299
Query: 1192 KQKEESE 1212
+ KEESE
Sbjct: 300 EAKEESE 306
>ref|NP_001230644.1| mRNA turnover 4 homolog [Sus scrofa].
Length = 241
Score = 49.3 bits (116), Expect = 5e-06
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 8/193 (4%)
Frame = +1
Query: 319 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAI-RGH 495
K N ++ + +D Y FI N+ + +++ IR + + + GKN +M A+ R
Sbjct: 23 KQNLIEELRKCVDTYKFLFIFSVANMRNSKLKDIRNAWKHSRM-FFGKNKVMMVALGRSP 81
Query: 496 LEN-NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPXXXXXXXXXPCEVTVPAQN 672
E L ++ +RG VG +FT E+ + K TV N
Sbjct: 82 CEEYRDNLHQVSKKLRGEVGLLFTNRTKEEVNEWF--TKYGEMDYARAGNKATFTV---N 136
Query: 673 TGLGP------EKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNIS 834
GP + LG+ T + +G + +LSD ++ K GD + +A +L +
Sbjct: 137 LDPGPLEQFPHSMEPQLRQLGLPTTLKKGVVTLLSDYEVCKEGDVLTPEQARILKLFGYE 196
Query: 835 PFSFGLIIQQVFD 873
F + I+ ++D
Sbjct: 197 MAEFKVTIRYMWD 209
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,818,903
Number of extensions: 1396145
Number of successful extensions: 3637
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001038
(1385 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 650 0.0
Sscrofa_Chr08 537 e-150
Sscrofa_Chr17 68 1e-08
>Sscrofa_Chr14
|| Length = 153851969
Score = 650 bits (328), Expect = 0.0
Identities = 477/527 (90%), Gaps = 16/527 (3%)
Strand = Plus / Minus
Query: 219 ctctcgccaggcgtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccctg 278
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct: 120959405 ctctcaccaggcgtcctcgtgtgagtgacatcatctttaaaccctgcgtggcaattccgg 120959346
Query: 279 acgcaccgccgtgatgcccagggaagacagggcgacctggaagtccaactacttccttaa 338
|||||| ||||||||||||||||||||| |||| ||| |||||||||||| |||||||||
Sbjct: 120959345 acgcactgccgtgatgcccagggaagacggggcaacccggaagtccaactgcttccttaa 120959286
Query: 339 gataatccaacttctggatgattatccgaaatgcttcattgtgggagcagacaatgtggg 398
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120959285 gataatccaacttctggatgattatctgaaatgcttcattgtgggagcagacaatgtggg 120959226
Query: 399 ctccaagcagatgcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatggg 458
|||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||| |||
Sbjct: 120959225 ctccaatcagatgcagcagatccacatgtccctccgcgggaaggccgtggtgctgacggg 120959166
Query: 459 caagaacaccatgatgc----gcaaggccatccgagggcacctggaaaacaacccagccc 514
||||||||||||||||| |||||||||||| |||||| |||||| ||
Sbjct: 120959165 caagaacaccatgatgcacatgcaaggccatcc-----------gaaaaccacccagtcc 120959117
Query: 515 tggagaaactgttgcctcacatccgggggaacgtgggctttgtgttcaccaaggaggacc 574
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120959116 tggagaaacggttgcctcacatccgggggaacgtgggctttgtattcaccaaggaggacc 120959057
Query: 575 tcactgagatcagggacatgctgctggccaataaggtgccagctgccgcccgtgctggtg 634
|||||||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||| ||
Sbjct: 120959056 tcactgagttca-ggacatgcttctggccagtaaggtgccagctgctgcccatgctgctg 120958998
Query: 635 ccatagccccatgcgaagtcactgtacctgcccagaacactggtctggggcctgagaaga 694
||||||||| || ||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 120958997 ccatagccctgtgtgaagtcactgtgcttgcccagaacactggtctggggcccaagaaga 120958938
Query: 695 cctccttcttccaggctttaggcatcaccactaaaatctccaggggc 741
||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 120958937 cctcctttttccaggctttaggcatcaccactaaaatttccaggggc 120958891
Score = 424 bits (214), Expect = e-116
Identities = 338/376 (89%), Gaps = 15/376 (3%)
Strand = Plus / Minus
Query: 775 aagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaacatctcc 834
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 120958250 aagactggagacaaagtgggagccagtgaagccacgttgctgaacac---------ctcc 120958200
Query: 835 cccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctacaaccct 894
|||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct: 120958199 cccttctcctctgggctgatcatc-agcgggtgtttga---tggcagcatctacaaccct 120958144
Query: 895 gaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtccgcaat 954
|||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||
Sbjct: 120958143 gaagtgcttgacatcaccaaggaaactctgcattctcgcttcctgaacagtgtccgcaat 120958084
Query: 955 gttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccattctatc 1014
|||||| | ||||| ||||| | | ||||||||||||||||||||| || ||||||||||
Sbjct: 120958083 gttgcccgtgtatgcctgcacactagttacccaactgttgcatctgcactccattctatc 120958024
Query: 1015 atcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcccactt 1074
||||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120958023 atcaa-ggatacaagtgggtcctggctttgtctgtggagactgattacaccttcccactt 120957965
Query: 1075 gctgaaaaggtcaaggccttcttggctgatccatctgccttttgtggctgctgcccctgt 1134
|||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 120957964 gctgaaaaagtcaaggccttcttggctgatccatctg-catttgtggctgctgcccctgt 120957906
Query: 1135 ggctgcagccaccact 1150
||| || ||||||||
Sbjct: 120957905 ggccgccaccaccact 120957890
Score = 111 bits (56), Expect = 1e-21
Identities = 62/64 (96%)
Strand = Plus / Minus
Query: 726 taaaatctccaggggcaccattgaaatcctgagtgatgtgcagctgattaagactggaga 785
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 120958638 taaaatctccaggggcacaattgaaatcctgagtgatgtgcagctcattaagactggaga 120958579
Query: 786 caaa 789
||||
Sbjct: 120958578 caaa 120958575
Score = 71.9 bits (36), Expect = 9e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 334 cttaagataatccaacttctggatgattatccgaaatgcttcattgtgggagcaga 389
|||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct: 109965555 cttaagatcatccaactattgggtgattatccaaaatgcttcattgtgggagcaga 109965500
>Sscrofa_Chr08
|| Length = 148491826
Score = 537 bits (271), Expect = e-150
Identities = 745/898 (82%), Gaps = 30/898 (3%)
Strand = Plus / Minus
Query: 231 gtcctcgtgtgagtgacatcgtctttaaaccctgcgtggcaatccctgacgcaccgccgt 290
||||| |||| |||||||| |||||||||| |||| ||||||||||||| ||||||| ||
Sbjct: 145199002 gtccttgtgtaagtgacattgtctttaaacgctgcctggcaatccctgatgcaccgctgt 145198943
Query: 291 gatgcccagggaagacagggcgacctggaagtccaactacttccttaagataatccaact 350
| | ||||||| ||||||| ||||||| |||||| ||||||||||||| | ||| |||
Sbjct: 145198942 ggttcccagggcagacaggatgacctgggagtccagctacttccttaaggtcatctgact 145198883
Query: 351 tctggatgattatccgaaatgcttcattgtgggagcagacaatgtgggctccaagcagat 410
|||||||||||||||||||||||||| || ||||||||||| |||| | |
Sbjct: 145198882 tctggatgattatccgaaatgcttcactgccggagcagacaacgtggacac--------- 145198832
Query: 411 gcagcagatccgcatgtctctccgcgggaaagccgtggtgctgatgggcaagaacaccat 470
||||||| | | ||| || |||| | || ||||| |||||||| || | |||
Sbjct: 145198831 -------atccgcacgcccctcagcaggaa-gacgaggtgcggatgggcaggagcgccag 145198780
Query: 471 gatgcgcaaggccatccgagggcacctggaaaacaacccagccctggagaaactgttgcc 530
||||||| |||||||||||||||||||| | || | | || |||||||||| ||||||
Sbjct: 145198779 gatgcgcgaggccatccgagggcacctgcgga-cagcgccgctctggagaaacagttgcc 145198721
Query: 531 tcacatccg-ggggaacgtgggctttgtgttcaccaaggaggacctcactgagatcaggg 589
|||||||| ||||| |||||||||| |||||||||||||||||||||||||| || |
Sbjct: 145198720 tcacatcccaggggagggtgggctttgcattcaccaaggaggacctcactgagattagag 145198661
Query: 590 acatgctgctggccaataaggtgccagctgccgcccgtgctggtgccatagccccatgcg 649
||| |||||||||| ||||||||| ||||| || ||| |||||||||||||| |||
Sbjct: 145198660 acagcctgctggccagtaaggtgcccactgccacctgtgttggtgccatagccctgtgca 145198601
Query: 650 aagtcactgtacctgcccagaacactggtctggggcctgagaagacctccttcttccagg 709
||||||||| || ||||||||||| |||||||||| ||||||||| ||||||||||||
Sbjct: 145198600 gagtcactgtgcccgcccagaacacgagtctggggcccgagaagacccccttcttccagg 145198541
Query: 710 ctttaggcatcaccactaaaatctccaggggcaccattgaaatcctgagtgatgtgcagc 769
|||||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 145198540 ctttaggcatcaccgctgaaatctccaggggcaccgtcgaaatcctgagggatgtgcagc 145198481
Query: 770 tgattaagactggagacaaagtgggagccagtgaagccacgttgctgaacatgttgaaca 829
|||||||||| ||||||| |||||||||||| | |||||| |||||||||| |||||
Sbjct: 145198480 tgattaagac-ggagacagagtgggagccagcggagccacattgctgaacaccctgaacc 145198422
Query: 830 tctcccccttctcctttgggctgatcatccagcaggtgtttgacaatggcagcatctaca 889
|||||||| ||| |||||||| ||||||| ||||| ||||||| ||||||||| ||
Sbjct: 145198421 tctcccccagctcgtttgggctcatcatccggcaggggtttgactgcggcagcatcgacc 145198362
Query: 890 accctgaagtgcttgacatcaccgaggaaactctgcattctcgcttcctggagggtgtcc 949
| ||||| ||||||||| |||| ||||| |||||| ||||| | ||||||| |||
Sbjct: 145198361 atcctgacgtgcttgacgtcacagaggagactctggattct------ccggagggtatcc 145198308
Query: 950 gcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatctgtaccccatt 1009
| | |||||||||| |||||||||||||| |||||| |||||| ||||||||||||||
Sbjct: 145198307 gagagcttgccagcgtgtgtctgcagattggctacccagctgttgaatctgtaccccatt 145198248
Query: 1010 ctatcatcaatgggtacaagcgggtcctggctttgtctgtggaaactgattacaccttcc 1069
||||||||| ||||||||| |||||||||||||||| |||| || | | ||||| |||
Sbjct: 145198247 ctatcatcattgggtacaaatgggtcctggctttgtc--tggagacaggtaacaccgtcc 145198190
Query: 1070 cacttgctgaaaaggtcaaggccttcttggctgatccatctgccttttgtggctgctg 1127
| ||||||||||| |||||||| ||||||||| ||||||| | | |||||||||||||
Sbjct: 145198189 c-cttgctgaaaaagtcaaggcattcttggctaatccatcag-catttgtggctgctg 145198134
>Sscrofa_Chr17
|| Length = 69701581
Score = 67.9 bits (34), Expect = 1e-08
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 940 gagggtgtccgcaatgttgccagcgtatgtctgcagattggttacccaactgttgcatct 999
||||||||| ||| | |||||||| |||||| ||||||| || |||| || |||||||
Sbjct: 28509167 gagggtgtctgcagttttgccagcctatgtcggcagattaattgcccacctcttgcatca 28509108
Query: 1000 gtaccccattctatcatcaatgggtacaagcgggtcctggctttgtctgtggaa 1053
| | ||||||||| ||||| |||||||| |||||||||||| |||| |||||
Sbjct: 28509107 ggatcccattctagcatcagcaggtacaagagggtcctggcttggtctatggaa 28509054
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,518,822
Number of extensions: 185
Number of successful extensions: 185
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 10
Length of query: 1385
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1364
Effective length of database: 2,808,413,156
Effective search space: 3830675544784
Effective search space used: 3830675544784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)