Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001050
(1556 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039333.1| NF-kappa-B inhibitor alpha [Bos taurus]. 595 e-170
Alignment gi|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos ... 135 8e-32
Alignment gi|NP_001124218.1| NF-kappa-B inhibitor epsilon [Bos taurus]. 134 2e-31
Alignment gi|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos ... 113 5e-25
Alignment gi|NP_001192922.1| B-cell CLL/lymphoma 3 [Bos taurus]. 110 4e-24
Alignment gi|XP_002695135.1| PREDICTED: B-cell CLL/lymphoma 3-like [Bos t... 110 4e-24
Alignment gi|NP_001192959.1| mindbomb homolog 1 [Bos taurus]. 92 1e-18
Alignment gi|XP_002697767.1| PREDICTED: mindbomb homolog 1 (Drosophila) [... 92 1e-18
Alignment gi|NP_777151.1| NF-kappa-B inhibitor zeta [Bos taurus]. 84 3e-16
Alignment gi|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bo... 83 8e-16
>ref|NP_001039333.1| NF-kappa-B inhibitor alpha [Bos taurus].
Length = 314
Score = 595 bits (1534), Expect = e-170
Identities = 294/314 (93%), Positives = 295/314 (93%)
Frame = +2
Query: 377 MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
MFQPAEPGQ+WAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP
Sbjct: 1 MFQPAEPGQDWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 60
Query: 557 RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61 RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 120
Query: 737 TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN
Sbjct: 121 TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 180
Query: 917 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240
Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXL 1276
ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ LP L
Sbjct: 241 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQTLPESEDEESYDTESEFTEDEL 300
Query: 1277 PYDDCVLGGQRLTL 1318
PYDDCVLGGQRLTL
Sbjct: 301 PYDDCVLGGQRLTL 314
>ref|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos taurus].
Length = 969
Score = 135 bits (341), Expect = 8e-32
Identities = 84/197 (42%), Positives = 115/197 (58%), Gaps = 3/197 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GDS LHLAIIH L +++ G ++ +N +N+L QTPLHLAVIT Q + E
Sbjct: 538 ENGDSVLHLAIIHLHNQLVRDLLEVTSGLISDEIINMRNDLYQTPLHLAVITRQEAVVED 597
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
LL AG D L D GN+ LHLA ++G +G+L + + L + N G +H+
Sbjct: 598 LLRAGADLSLLDRLGNSVLHLAAKEGHDKILGILLKHKKAAQL---IDHPNGEGLNAIHV 654
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
A + L + LL++ GADVNAQE +GRTALHLAV+ N L L L+ A V+ TY
Sbjct: 655 AMMSNSLPCLLLLMAAGADVNAQERKSGRTALHLAVEHDNVSLAGCLXLEGDAHVDSTTY 714
Query: 1121 QGYSPYQLTWGRPSTRI 1171
G +P + GR STR+
Sbjct: 715 DGTTPLHIAAGRGSTRL 731
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Frame = +2
Query: 596 GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
G+S LHLA E + ++ + K ++ N +H+A+++N L+ A
Sbjct: 612 GNSVLHLAA-KEGHDKILGILLKHKKAAQLIDHPNGEGLNAIHVAMMSNSLPCLLLLMAA 670
Query: 776 GCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
G D ++ + G T LHLA E ++ G L G H+ S T Y+G T LH+A+
Sbjct: 671 GADVNAQERKSGRTALHLAVEHDNVSLAGCLXL-EGDAHVDS----TTYDGTTPLHIAAG 725
Query: 953 HGYLGIVELLVSLGAD 1000
G + LL + GAD
Sbjct: 726 RGSTRLAALLKAAGAD 741
>ref|NP_001124218.1| NF-kappa-B inhibitor epsilon [Bos taurus].
Length = 362
Score = 134 bits (337), Expect = 2e-31
Identities = 82/212 (38%), Positives = 123/212 (58%), Gaps = 4/212 (1%)
Frame = +2
Query: 584 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
++EDGD+ +HLA+IHE A+ + + + ++ L+ QNNL QT LHLAV +QP A
Sbjct: 117 ISEDGDTLIHLAVIHEAPAVLLYCLALLPQEV--LDIQNNLYQTALHLAVHLDQPGAVRA 174
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR---GTQHLHSI-LQATNYNGHT 931
L+ G L+D G+T LH+AC++ LA L + + G HS+ LQ N+ G
Sbjct: 175 LVLKGASRVLQDRHGDTALHVACQRQHLACARCLLEGQPEPGRGPPHSLDLQLQNWQGLA 234
Query: 932 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 1111
CLH+A++ ++ELL+ GAD++ QE +G+TALHLAV+ Q LV LL+ GA V+
Sbjct: 235 CLHIATLQRNRPLMELLLQNGADIDVQEGTSGKTALHLAVETQERGLVQFLLQAGARVDA 294
Query: 1112 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 1207
G +P L GR + I L + ++L
Sbjct: 295 RMLNGCTPLHLAAGRGLSGISSTLCEAGADSL 326
>ref|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos taurus].
Length = 900
Score = 113 bits (282), Expect = 5e-25
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + + ++ + L +N N+L QTPLHLAVIT Q ++
Sbjct: 487 ENGDTPLHLAIIHGQTTVIEQIAHVIYHAPHLGVVNITNHLHQTPLHLAVITGQTKVVSF 546
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
LL+ G DP L D G++ +HLA G A + R G + +L ++ G +H
Sbjct: 547 LLQVGADPALLDRHGDSAVHLALRAGASAPDMLCALLRSGVPAMPQLLHVPDFEGLYPVH 606
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 607 LAVRARSPECLDLLVESGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 666
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 667 FAGNTPLHLAAGLGSPTLTRLL 688
Score = 55.8 bits (133), Expect = 1e-07
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAF---LNFQNNLQQTPLHLA 730
GA+P L GDS +HLA+ A M G A L+ + P+HLA
Sbjct: 551 GADP--ALLDRHGDSAVHLALRAGASAPDMLCALLRSGVPAMPQLLHVPDFEGLYPVHLA 608
Query: 731 VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
V PE + L+E+G + E + +G T LHLA E + +G++T L + +
Sbjct: 609 VRARSPECLDLLVESGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 663
Query: 908 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
A + G+T LHLA+ G + LL+ GADV+A+
Sbjct: 664 ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADVHAE 698
>ref|NP_001192922.1| B-cell CLL/lymphoma 3 [Bos taurus].
Length = 454
Score = 110 bits (274), Expect = 4e-24
Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
EDGD+ LH+A++ +V + L+ NNL+QTPLHLAVIT P + L+
Sbjct: 133 EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192
Query: 770 EAGCDPELRDFRGNTPLHLACEQGCLASVGVL--TQPRGTQHLHSILQATNYNGHTCLHL 943
AG P D G T HLACE A + L + P GT L+A NY+G T LH+
Sbjct: 193 MAGASPMALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMD----LEARNYDGLTALHV 248
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 1123
A V LL+ GAD++A + +GR+ L AV+ + +V LLL+ GA+VN Y
Sbjct: 249 AVNTECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 308
Query: 1124 GYSPYQLTWGR 1156
G S GR
Sbjct: 309 GSSALHSASGR 319
Score = 60.1 bits (144), Expect = 5e-09
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVIT 739
GA P L G + HLA H A ++ G L +N T LH+AV T
Sbjct: 195 GASP--MALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMDLEARNYDGLTALHVAVNT 252
Query: 740 NQPEIAEALLEAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
E LLE G D + D + G +PL A E L+ V +L Q + A
Sbjct: 253 ECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQM 306
Query: 917 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
Y+G + LH AS G L +V LV GAD + + C+ T L +A
Sbjct: 307 YSGSSALHSASGRGLLPLVRTLVRSGAD-SGLKNCHNDTPLMVA 349
>ref|XP_002695135.1| PREDICTED: B-cell CLL/lymphoma 3-like [Bos taurus].
Length = 454
Score = 110 bits (274), Expect = 4e-24
Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
EDGD+ LH+A++ +V + L+ NNL+QTPLHLAVIT P + L+
Sbjct: 133 EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192
Query: 770 EAGCDPELRDFRGNTPLHLACEQGCLASVGVL--TQPRGTQHLHSILQATNYNGHTCLHL 943
AG P D G T HLACE A + L + P GT L+A NY+G T LH+
Sbjct: 193 MAGASPMALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMD----LEARNYDGLTALHV 248
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 1123
A V LL+ GAD++A + +GR+ L AV+ + +V LLL+ GA+VN Y
Sbjct: 249 AVNTECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 308
Query: 1124 GYSPYQLTWGR 1156
G S GR
Sbjct: 309 GSSALHSASGR 319
Score = 60.1 bits (144), Expect = 5e-09
Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVIT 739
GA P L G + HLA H A ++ G L +N T LH+AV T
Sbjct: 195 GASP--MALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMDLEARNYDGLTALHVAVNT 252
Query: 740 NQPEIAEALLEAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
E LLE G D + D + G +PL A E L+ V +L Q + A
Sbjct: 253 ECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQM 306
Query: 917 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
Y+G + LH AS G L +V LV GAD + + C+ T L +A
Sbjct: 307 YSGSSALHSASGRGLLPLVRTLVRSGAD-SGLKNCHNDTPLMVA 349
>ref|NP_001192959.1| mindbomb homolog 1 [Bos taurus].
Length = 1006
Score = 92.0 bits (227), Expect = 1e-18
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
+DGD +H A +E A+ +EV+ + DL N +N +QTPLH+AV ++ + LL
Sbjct: 495 KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550
Query: 770 EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
+ GC P L+D G+TPLH A + L G +T G LH
Sbjct: 551 DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610
Query: 899 -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
I+ +G+T LHLA+++ ++ + ELLV G A+++ Q N +TA
Sbjct: 611 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669
Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LHLAV+ Q+ +V LL++ GA ++ G +P
Sbjct: 670 LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702
Score = 55.5 bits (132), Expect = 1e-07
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Frame = +2
Query: 569 PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
PW + +DG + LHLA ++ + +V Q +L + QN QQT LHLAV
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
+I L+ AG +++D G+TPLH A L+ L Q + Q + + A +
Sbjct: 679 TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735
Query: 926 HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
+T + G I L + GAD++ + G++ L L D P L L K
Sbjct: 736 NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791
Query: 1091 C 1093
C
Sbjct: 792 C 792
>ref|XP_002697767.1| PREDICTED: mindbomb homolog 1 (Drosophila) [Bos taurus].
Length = 1006
Score = 92.0 bits (227), Expect = 1e-18
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
+DGD +H A +E A+ +EV+ + DL N +N +QTPLH+AV ++ + LL
Sbjct: 495 KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550
Query: 770 EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
+ GC P L+D G+TPLH A + L G +T G LH
Sbjct: 551 DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610
Query: 899 -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
I+ +G+T LHLA+++ ++ + ELLV G A+++ Q N +TA
Sbjct: 611 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669
Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LHLAV+ Q+ +V LL++ GA ++ G +P
Sbjct: 670 LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702
Score = 55.5 bits (132), Expect = 1e-07
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Frame = +2
Query: 569 PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
PW + +DG + LHLA ++ + +V Q +L + QN QQT LHLAV
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
+I L+ AG +++D G+TPLH A L+ L Q + Q + + A +
Sbjct: 679 TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735
Query: 926 HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
+T + G I L + GAD++ + G++ L L D P L L K
Sbjct: 736 NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791
Query: 1091 C 1093
C
Sbjct: 792 C 792
>ref|NP_777151.1| NF-kappa-B inhibitor zeta [Bos taurus].
Length = 718
Score = 84.0 bits (206), Expect = 3e-16
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
Frame = +2
Query: 593 DGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLE 772
DGD+FLH+A+ +AL+ + R++ L L+ + + Q+ +AV NQ I + L+
Sbjct: 443 DGDTFLHIAVAQGRRALSYVLARKMNA-LHMLDIKEHNGQSAFQVAVAANQHLIVQDLVT 501
Query: 773 AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
G D G TPLH+ E+G + + + + L+ATNY+G T LH A +
Sbjct: 502 LGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAAGSNQFVDLEATNYDGLTPLHCAVL 561
Query: 953 ---------------------------HGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 1051
+ ++ L+ +GA V A++ +GRTALHLA
Sbjct: 562 AHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQMGAAVEAKDRKSGRTALHLAA 621
Query: 1052 DLQNPDLVSLLLK---CGADVNRVTYQG 1126
+ N +L+ L L+ C + VN Y G
Sbjct: 622 EEANLELIRLFLELPSCLSFVNAKAYNG 649
Score = 49.3 bits (116), Expect = 9e-06
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Frame = +2
Query: 794 RDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIV 973
+D G+T LH+A QG A VL + H+ L +NG + +A IV
Sbjct: 440 KDADGDTFLHIAVAQGRRALSYVLARKMNALHM---LDIKEHNGQSAFQVAVAANQHLIV 496
Query: 974 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA------DVNRVTYQGYSP 1135
+ LV+LGA VN + C GRT LH+ + + ++ + K A D+ Y G +P
Sbjct: 497 QDLVTLGAQVNTTD-CWGRTPLHVCAEKGHSQVLQAIQKGAAGSNQFVDLEATNYDGLTP 555
>ref|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bos taurus].
Length = 951
Score = 82.8 bits (203), Expect = 8e-16
Identities = 53/146 (36%), Positives = 81/146 (55%)
Frame = +2
Query: 695 QNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQP 874
Q+ + LHLA + E + LL++ C E D G T LH A QGCL +V VL +
Sbjct: 82 QDTAGHSALHLAAKNSHHECVKKLLQSKCPAESIDSSGKTALHYAAAQGCLQAVQVLCEH 141
Query: 875 RGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 1054
R +L + +G+ L LA +G+ + L+ GADVN+++ NGRTAL LA +
Sbjct: 142 RSPINLKDL------DGNIPLLLAVQNGHSEVCRFLLDHGADVNSRDK-NGRTALMLACE 194
Query: 1055 LQNPDLVSLLLKCGADVNRVTYQGYS 1132
+ + ++V L+K GAD+N V G++
Sbjct: 195 IGSSNIVEALIKKGADLNLVDSLGHN 220
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,550,900
Number of extensions: 1869464
Number of successful extensions: 11344
Number of sequences better than 1.0e-05: 160
Number of HSP's gapped: 10156
Number of HSP's successfully gapped: 348
Length of query: 518
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 411
Effective length of database: 14,140,958
Effective search space: 5811933738
Effective search space used: 5811933738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001050
(1556 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537413.2| PREDICTED: similar to nuclear factor of kappa l... 576 0.0
Alignment gi|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Cani... 130 3e-30
Alignment gi|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B... 111 2e-24
Alignment gi|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 111 2e-24
Alignment gi|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 111 2e-24
Alignment gi|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B... 111 2e-24
Alignment gi|XP_855175.1| PREDICTED: similar to B-cell lymphoma 3-encoded... 94 3e-19
Alignment gi|XP_547643.2| PREDICTED: similar to mindbomb homolog 1 [Canis... 92 1e-18
Alignment gi|XP_535726.2| PREDICTED: similar to nuclear factor of kappa l... 85 2e-16
Alignment gi|XP_539957.2| PREDICTED: similar to ankyrin 1 isoform 3 [Cani... 85 2e-16
>ref|XP_537413.2| PREDICTED: similar to nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, alpha [Canis familiaris].
Length = 515
Score = 576 bits (1485), Expect(2) = 0.0
Identities = 288/318 (90%), Positives = 291/318 (91%)
Frame = +2
Query: 365 PHRAMFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEP 544
P RAM Q AE Q+WAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQ+VKELREIRLEP
Sbjct: 198 PSRAMLQQAEHAQDWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQLVKELREIRLEP 257
Query: 545 QEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLH 724
QEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLH
Sbjct: 258 QEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLH 317
Query: 725 LAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSIL 904
LAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ TQHL+SIL
Sbjct: 318 LAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQTCRTQHLYSIL 377
Query: 905 QATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 1084
QATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN DLVSLL
Sbjct: 378 QATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNSDLVSLL 437
Query: 1085 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXX 1264
LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP
Sbjct: 438 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 497
Query: 1265 XXXLPYDDCVLGGQRLTL 1318
LPYDDCVLGGQRLTL
Sbjct: 498 EDELPYDDCVLGGQRLTL 515
Score = 88.2 bits (217), Expect(2) = 0.0
Identities = 47/78 (60%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
Frame = +1
Query: 145 EDEASSLFWSDWLGNSPSLTPPRRNPLPAFIGRRGGAADCTTVRGHRPARPSHREQPAR- 321
+D ASSLFWSDWLGNSP LTPPRRNPLPAFIGRRGGA + T V PA + R + R
Sbjct: 122 KDGASSLFWSDWLGNSPRLTPPRRNPLPAFIGRRGGAGEPTRVAASGPASVTLRGEARRG 181
Query: 322 --RAACGPRT*GAAPKPS 369
RAA G G++ +PS
Sbjct: 182 GERAARGRAHLGSSAEPS 199
>ref|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Canis lupus familiaris].
Length = 972
Score = 130 bits (328), Expect = 3e-30
Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 3/196 (1%)
Frame = +2
Query: 593 DGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEAL 766
+GDS LHLAIIH L +++ G ++ +N +N+L QTPLHLAVIT Q + + L
Sbjct: 539 NGDSVLHLAIIHLHAQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEAVVDDL 598
Query: 767 LEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLA 946
L AG D L D GN+ LHLA ++G + +L + + L + N G +H+A
Sbjct: 599 LRAGADLSLLDRLGNSVLHLAAKEGQDKILSILLKHKKAALL---MDHPNGEGLNAIHIA 655
Query: 947 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQ 1123
+ + + LLV+ GADVNAQE +GRTALHLAV+ N L LLL+ A V+ TY
Sbjct: 656 VMSNSMPCLLLLVAAGADVNAQERKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTYD 715
Query: 1124 GYSPYQLTWGRPSTRI 1171
G +P + GR STR+
Sbjct: 716 GTTPLHIAAGRGSTRL 731
Score = 53.5 bits (127), Expect = 5e-07
Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = +2
Query: 596 GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
G+S LHLA + + +++ K L ++ N +H+AV++N L+ A
Sbjct: 612 GNSVLHLAAKEGQDKILSILLKHKKAAL-LMDHPNGEGLNAIHIAVMSNSMPCLLLLVAA 670
Query: 776 GCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
G D ++ + G T LHLA E ++ G L G H+ S T Y+G T LH+A+
Sbjct: 671 GADVNAQERKSGRTALHLAVEHDNISLAGCLLL-EGDAHVDS----TTYDGTTPLHIAAG 725
Query: 953 HGYLGIVELLVSLGAD 1000
G + LL + GAD
Sbjct: 726 RGSTRLAALLKAAGAD 741
>ref|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 1 [Canis familiaris].
Length = 899
Score = 111 bits (278), Expect = 2e-24
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
LL+ G DP L D G++ +HLA G A + R G + +L ++ G +H
Sbjct: 546 LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 605
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 606 LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 665
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 666 FAGNTPLHLAAGLGSPTLTRLL 687
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
GA+P L GDS +HLA+ A L ++R + L + + P+HLA
Sbjct: 550 GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 607
Query: 731 VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
V PE + L+++G + E + +G T LHLA E + +G++T L + +
Sbjct: 608 VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 662
Query: 908 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 663 ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697
>ref|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 5 [Canis familiaris].
Length = 889
Score = 111 bits (278), Expect = 2e-24
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 476 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 535
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
LL+ G DP L D G++ +HLA G A + R G + +L ++ G +H
Sbjct: 536 LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 595
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 596 LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 655
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 656 FAGNTPLHLAAGLGSPTLTRLL 677
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
GA+P L GDS +HLA+ A L ++R + L + + P+HLA
Sbjct: 540 GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 597
Query: 731 VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
V PE + L+++G + E + +G T LHLA E + +G++T L + +
Sbjct: 598 VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 652
Query: 908 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 653 ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 687
>ref|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 4 [Canis familiaris].
Length = 904
Score = 111 bits (278), Expect = 2e-24
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 491 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 550
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
LL+ G DP L D G++ +HLA G A + R G + +L ++ G +H
Sbjct: 551 LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 610
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 611 LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 670
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 671 FAGNTPLHLAAGLGSPTLTRLL 692
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
GA+P L GDS +HLA+ A L ++R + L + + P+HLA
Sbjct: 555 GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 612
Query: 731 VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
V PE + L+++G + E + +G T LHLA E + +G++T L + +
Sbjct: 613 VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 667
Query: 908 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 668 ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 702
>ref|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
(DNA-binding factor KBF2) (H2TF1) (Lymphocyte
translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
isoform 3 [Canis familiaris].
Length = 899
Score = 111 bits (278), Expect = 2e-24
Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
LL+ G DP L D G++ +HLA G A + R G + +L ++ G +H
Sbjct: 546 LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 605
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 606 LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 665
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 666 FAGNTPLHLAAGLGSPTLTRLL 687
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
GA+P L GDS +HLA+ A L ++R + L + + P+HLA
Sbjct: 550 GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 607
Query: 731 VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
V PE + L+++G + E + +G T LHLA E + +G++T L + +
Sbjct: 608 VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 662
Query: 908 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 663 ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697
>ref|XP_855175.1| PREDICTED: similar to B-cell lymphoma 3-encoded protein (Bcl-3
protein) [Canis familiaris].
Length = 509
Score = 94.4 bits (233), Expect = 3e-19
Identities = 66/172 (38%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
EDGD+ LH+A++ +V + L+ NNL+QTPLHLAVIT P + L+
Sbjct: 196 EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSMVRLLV 255
Query: 770 EAGCDPELRDFRGNTPLHLACEQ---GCLASVGVLTQPRGTQHLHSILQATNYNGHTCLH 940
AG P D G T HLACE CL ++ P GT L+A NY+G T LH
Sbjct: 256 MAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-GTVD----LEARNYDGLTALH 310
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
+A V LL+ GAD++A + +GR+ L AV+ + +V LLL+ G
Sbjct: 311 VAVNMQCPEAVLLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQVG 362
>ref|XP_547643.2| PREDICTED: similar to mindbomb homolog 1 [Canis familiaris].
Length = 1006
Score = 92.0 bits (227), Expect = 1e-18
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
+DGD +H A +E A+ +EV+ + DL N +N +QTPLH+AV ++ + LL
Sbjct: 495 KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550
Query: 770 EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
+ GC P L+D G+TPLH A + L G +T G LH
Sbjct: 551 DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610
Query: 899 -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
I+ +G+T LHLA+++ ++ + ELLV G A+++ Q N +TA
Sbjct: 611 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669
Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LHLAV+ Q+ +V LL++ GA ++ G +P
Sbjct: 670 LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702
Score = 55.5 bits (132), Expect = 1e-07
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Frame = +2
Query: 569 PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
PW + +DG + LHLA ++ + +V Q +L + QN QQT LHLAV
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
+I L+ AG +++D G+TPLH A L+ L Q + Q + + A +
Sbjct: 679 TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735
Query: 926 HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
+T + G I L + GAD++ + G++ L L D P L L K
Sbjct: 736 NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791
Query: 1091 C 1093
C
Sbjct: 792 C 792
>ref|XP_535726.2| PREDICTED: similar to nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, zeta isoform a [Canis
familiaris].
Length = 775
Score = 84.7 bits (208), Expect = 2e-16
Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Frame = +2
Query: 506 QMVKELREIRLEPQEAPRGAEPWKQQLTED--GDSFLHLAIIHEEKALTMEVVRQVKGDL 679
Q+ K + ++E +E+ Q L++D GD+FLH+A+ +AL+ + R++ L
Sbjct: 469 QLGKSFFQWQVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNA-L 527
Query: 680 AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
L+ + + Q+ +AV NQ I + L+ G D G TPLH+ E+G +
Sbjct: 528 HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 587
Query: 860 VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
+ + + L+ATNY+G T LH A +
Sbjct: 588 AIQKGAVKSNQFLDLEATNYDGLTPLHCAVVAHNAVVHELQRNQQPHSPEVQELLLKNKS 647
Query: 959 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQG 1126
+ ++ L+ +GA V A++ +GRTALHLA + N +L+ L L+ C + VN Y G
Sbjct: 648 MVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNG 706
>ref|XP_539957.2| PREDICTED: similar to ankyrin 1 isoform 3 [Canis familiaris].
Length = 1881
Score = 84.7 bits (208), Expect = 2e-16
Identities = 54/141 (38%), Positives = 75/141 (53%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A NQ E+A +LL+ G +G TPLHLA ++G V +L + +L
Sbjct: 630 TPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 689
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
N +G T LHL + G++ + ++L+ G V+A G T LH+A N L
Sbjct: 690 ------GNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRM-GYTPLHVASHYGNIKL 742
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
V LL+ ADVN T QGYSP
Sbjct: 743 VKFLLQHQADVNAKTKQGYSP 763
Score = 79.0 bits (193), Expect = 1e-14
Identities = 58/194 (29%), Positives = 91/194 (46%)
Frame = +2
Query: 608 LHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDP 787
LH+A +A EV + + + A +N + QTPLH A + + LLE +P
Sbjct: 467 LHMAA----RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 522
Query: 788 ELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLG 967
L G+TPLH+A +G + + L + +Q G T LH+A+ +G +
Sbjct: 523 NLATTAGHTPLHIAAREGQVETALALLEKEASQ------ACMTKKGFTPLHVAAKYGKVR 576
Query: 968 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 1147
+ ELL+ A NA NG T LH+AV + D+V LLL G + + GY+P +
Sbjct: 577 VAELLLGRDAHPNAAGK-NGLTPLHVAVHHNHLDIVRLLLPRGGSPHSPAWNGYTPLHIA 635
Query: 1148 WGRPSTRIQQQLGQ 1189
+ + + L Q
Sbjct: 636 AKQNQMEVARSLLQ 649
Score = 70.9 bits (172), Expect = 3e-12
Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Frame = +2
Query: 470 SGLDSMKDEEYEQMVKEL--REIRLEPQEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKAL 643
+GL E + +MV EL +EI LE T+ G++ LH+A + +
Sbjct: 73 NGLHLASKEGHVKMVVELLHKEIILETT-------------TKKGNTALHIAALAGQD-- 117
Query: 644 TMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLH 823
EVVR++ A +N Q+ TPL++A N E+ + LLE G + + G TPL
Sbjct: 118 --EVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLA 175
Query: 824 LACEQG-----------------CLASVGVLTQPRGTQHLHSILQ------ATNYNGHTC 934
+A +QG L ++ + + T+ +LQ + G T
Sbjct: 176 VALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTP 235
Query: 935 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 1114
LH+A+ + L + +LL++ GA VN P NG T LH+A N +V LLL GA +
Sbjct: 236 LHIAAHYENLNVAQLLLNRGASVNF-TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETR 294
Query: 1115 TYQGYSPYQLTWGRPSTRIQQQL 1183
T +P RI + L
Sbjct: 295 TKDELTPLHCAARNGHVRISEIL 317
Score = 67.0 bits (162), Expect = 5e-11
Identities = 47/144 (32%), Positives = 67/144 (46%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A + +AE LL P G TPLH+A L V +L G+ H
Sbjct: 564 TPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHNHLDIVRLLLPRGGSPH- 622
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ +NG+T LH+A+ + + L+ G NA E G T LHLA + ++
Sbjct: 623 -----SPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEM 676
Query: 1073 VSLLLKCGADVNRVTYQGYSPYQL 1144
V+LLL A+ N G +P L
Sbjct: 677 VALLLSKQANGNLGNKSGLTPLHL 700
Score = 66.6 bits (161), Expect = 6e-11
Identities = 44/141 (31%), Positives = 68/141 (48%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A +A+ LL+ G P R G TPLH+AC++ + + +L + +
Sbjct: 366 TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGAS--- 422
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ A +G T LH+AS G+L IV+ L+ GA N T LH+A + ++
Sbjct: 423 ---IDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEV 478
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
LL+ A VN +P
Sbjct: 479 AKYLLQNKAKVNAKAKDDQTP 499
Score = 65.5 bits (158), Expect = 1e-10
Identities = 44/141 (31%), Positives = 72/141 (51%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A +A+ LL G G TPLH+A +G + V +L RG Q
Sbjct: 234 TPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLD-RGAQ-- 290
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
++ + T LH A+ +G++ I E+L+ GA + A+ NG + +H+A + D
Sbjct: 291 ---IETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTK-NGLSPIHMAAQGDHLDC 346
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
V LLL+ A+++ +T +P
Sbjct: 347 VRLLLQYNAEIDDITLDHLTP 367
Score = 58.9 bits (141), Expect = 1e-08
Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 27/217 (12%)
Frame = +2
Query: 566 EPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
+P L++ G + LH+A +E + V + + A +NF TPLH+A
Sbjct: 222 DPNPDVLSKTGFTPLHIAAHYEN----LNVAQLLLNRGASVNFTPQNGITPLHIASRRGN 277
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQG------CLASVGVLTQPRGT-------- 883
+ LL+ G E R TPLH A G L G Q +
Sbjct: 278 VIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHM 337
Query: 884 ----QHLHSILQATNYNGH---------TCLHLASIHGYLGIVELLVSLGADVNAQEPCN 1024
HL + YN T LH+A+ G+ + ++L+ GA N++ N
Sbjct: 338 AAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSR-ALN 396
Query: 1025 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
G T LH+A + ++ LLLK GA ++ VT G +P
Sbjct: 397 GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTP 433
Score = 51.2 bits (121), Expect = 3e-06
Identities = 38/120 (31%), Positives = 54/120 (45%)
Frame = +2
Query: 689 NFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 868
N N TPLHL +A+ L++ G + G TPLH+A G + V L
Sbjct: 688 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 747
Query: 869 QPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
Q + + A G++ LH A+ G+ IV LL+ GA N + NG T L +A
Sbjct: 748 QHQAD------VNAKTKQGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSNGTTPLAIA 800
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,063,886
Number of extensions: 1906050
Number of successful extensions: 13258
Number of sequences better than 1.0e-05: 204
Number of HSP's gapped: 11243
Number of HSP's successfully gapped: 738
Length of query: 518
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 411
Effective length of database: 15,307,552
Effective search space: 6291403872
Effective search space used: 6291403872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001050
(1556 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065390.1| NF-kappa-B inhibitor alpha [Homo sapiens]. 560 e-159
Alignment gi|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isofo... 139 9e-33
Alignment gi|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform ... 139 9e-33
Alignment gi|NP_004547.2| NF-kappa-B inhibitor epsilon [Homo sapiens]. 134 2e-31
Alignment gi|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isofo... 113 4e-25
Alignment gi|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isofo... 113 4e-25
Alignment gi|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform ... 113 4e-25
Alignment gi|NP_005169.2| B-cell lymphoma 3 protein [Homo sapiens]. 110 3e-24
Alignment gi|NP_065825.1| E3 ubiquitin-protein ligase MIB1 [Homo sapiens]. 92 1e-18
Alignment gi|NP_001005474.1| NF-kappa-B inhibitor zeta isoform b [Homo sa... 87 3e-17
>ref|NP_065390.1| NF-kappa-B inhibitor alpha [Homo sapiens].
Length = 317
Score = 560 bits (1443), Expect = e-159
Identities = 281/317 (88%), Positives = 285/317 (89%), Gaps = 3/317 (0%)
Frame = +2
Query: 377 MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
MFQ AE QEWAMEGPRD LKKERLLDDRHDSGLDSMKDEEYEQMVKEL+EIRLEPQE P
Sbjct: 1 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP 60
Query: 557 RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
RG+EPWKQQLTEDGDSFLHLAIIHEEKALTMEV+RQVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 120
Query: 737 TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
TNQPEIAEALL AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ T HLHSIL+ATN
Sbjct: 121 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 180
Query: 917 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240
Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP---XXXXXXXXXXXXXXXX 1267
ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP
Sbjct: 241 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 300
Query: 1268 XXLPYDDCVLGGQRLTL 1318
LPYDDCV GGQRLTL
Sbjct: 301 DELPYDDCVFGGQRLTL 317
>ref|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isoform 2 [Homo sapiens].
Length = 968
Score = 139 bits (349), Expect = 9e-33
Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 3/197 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GDS LHLAIIH L +++ G ++ +N +N+L QTPLHLAVIT Q ++ E
Sbjct: 541 ENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 600
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
LL AG D L D GN+ LHLA ++G + +L + + L L N +G +HL
Sbjct: 601 LLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLKHKKAALL---LDHPNGDGLNAIHL 657
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
A + L + LLV+ GADVNAQE +GRTALHLAV+ N L LLL+ A V+ TY
Sbjct: 658 AMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTY 717
Query: 1121 QGYSPYQLTWGRPSTRI 1171
G +P + GR STR+
Sbjct: 718 DGTTPLHIAAGRGSTRL 734
>ref|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform 1 [Homo sapiens].
Length = 969
Score = 139 bits (349), Expect = 9e-33
Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 3/197 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GDS LHLAIIH L +++ G ++ +N +N+L QTPLHLAVIT Q ++ E
Sbjct: 542 ENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 601
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
LL AG D L D GN+ LHLA ++G + +L + + L L N +G +HL
Sbjct: 602 LLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLKHKKAALL---LDHPNGDGLNAIHL 658
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
A + L + LLV+ GADVNAQE +GRTALHLAV+ N L LLL+ A V+ TY
Sbjct: 659 AMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTY 718
Query: 1121 QGYSPYQLTWGRPSTRI 1171
G +P + GR STR+
Sbjct: 719 DGTTPLHIAAGRGSTRL 735
>ref|NP_004547.2| NF-kappa-B inhibitor epsilon [Homo sapiens].
Length = 500
Score = 134 bits (338), Expect = 2e-31
Identities = 83/212 (39%), Positives = 122/212 (57%), Gaps = 4/212 (1%)
Frame = +2
Query: 584 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
++EDGD+ +HLA+IHE A+ + + + ++ L+ QNNL QT LHLAV +QP A
Sbjct: 255 ISEDGDTLVHLAVIHEAPAVLLCCLALLPQEV--LDIQNNLYQTALHLAVHLDQPGAVRA 312
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR---GTQHLHSI-LQATNYNGHT 931
L+ G L+D G+T LH+AC++ LA L + R G HS+ LQ N+ G
Sbjct: 313 LVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGTSHSLDLQLQNWQGLA 372
Query: 932 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 1111
CLH+A++ ++ELL+ GAD++ QE +G+TALHLAV+ Q LV LL+ GA V+
Sbjct: 373 CLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLVQFLLQAGAQVDA 432
Query: 1112 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 1207
G +P L GR I L + ++L
Sbjct: 433 RMLNGCTPLHLAAGRGLMGISSTLCKAGADSL 464
>ref|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isoform a [Homo sapiens].
Length = 900
Score = 113 bits (283), Expect = 4e-25
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++V + DL +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLAS--VGVLTQPRGTQHLHSILQATNYNGHTCL 937
LL G DP L D G++ +HLA G A + L Q G + +L ++ G +
Sbjct: 546 LLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQ-SGAPAVPQLLHMPDFEGLYPV 604
Query: 938 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV 1114
HLA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN
Sbjct: 605 HLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNAR 664
Query: 1115 TYQGYSPYQLTWG 1153
T+ G +P L G
Sbjct: 665 TFAGNTPLHLAAG 677
Score = 58.2 bits (139), Expect = 2e-08
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLA-----FLNFQNNLQQTPLH 724
GA+P L GDS +HLA+ A E++R + A L+ + P+H
Sbjct: 550 GADP--ALLDRHGDSAMHLAL--RAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVH 605
Query: 725 LAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSI 901
LAV PE + L+++G + E + +G T LHLA E + +G++T L +
Sbjct: 606 LAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATE---MEELGLVTHL--VTKLRAN 660
Query: 902 LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 1066
+ A + G+T LHLA+ GY + LL+ GAD++A+ P D + P
Sbjct: 661 VNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSEGP 720
Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 1201
+ R +++G++P LT + Q T+E
Sbjct: 721 E----------KDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTME 755
>ref|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
Length = 899
Score = 113 bits (283), Expect = 4e-25
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++V + DL +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLAS--VGVLTQPRGTQHLHSILQATNYNGHTCL 937
LL G DP L D G++ +HLA G A + L Q G + +L ++ G +
Sbjct: 546 LLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQ-SGAPAVPQLLHMPDFEGLYPV 604
Query: 938 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV 1114
HLA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN
Sbjct: 605 HLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNAR 664
Query: 1115 TYQGYSPYQLTWG 1153
T+ G +P L G
Sbjct: 665 TFAGNTPLHLAAG 677
Score = 58.2 bits (139), Expect = 2e-08
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLA-----FLNFQNNLQQTPLH 724
GA+P L GDS +HLA+ A E++R + A L+ + P+H
Sbjct: 550 GADP--ALLDRHGDSAMHLAL--RAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVH 605
Query: 725 LAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSI 901
LAV PE + L+++G + E + +G T LHLA E + +G++T L +
Sbjct: 606 LAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATE---MEELGLVTHL--VTKLRAN 660
Query: 902 LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 1066
+ A + G+T LHLA+ GY + LL+ GAD++A+ P D + P
Sbjct: 661 VNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSEGP 720
Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 1201
+ R +++G++P LT + Q T+E
Sbjct: 721 E----------KDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTME 755
>ref|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
Length = 899
Score = 113 bits (283), Expect = 4e-25
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + ++ ++V + DL +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLAS--VGVLTQPRGTQHLHSILQATNYNGHTCL 937
LL G DP L D G++ +HLA G A + L Q G + +L ++ G +
Sbjct: 546 LLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQ-SGAPAVPQLLHMPDFEGLYPV 604
Query: 938 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV 1114
HLA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN
Sbjct: 605 HLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNAR 664
Query: 1115 TYQGYSPYQLTWG 1153
T+ G +P L G
Sbjct: 665 TFAGNTPLHLAAG 677
Score = 58.2 bits (139), Expect = 2e-08
Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLA-----FLNFQNNLQQTPLH 724
GA+P L GDS +HLA+ A E++R + A L+ + P+H
Sbjct: 550 GADP--ALLDRHGDSAMHLAL--RAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVH 605
Query: 725 LAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSI 901
LAV PE + L+++G + E + +G T LHLA E + +G++T L +
Sbjct: 606 LAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATE---MEELGLVTHL--VTKLRAN 660
Query: 902 LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 1066
+ A + G+T LHLA+ GY + LL+ GAD++A+ P D + P
Sbjct: 661 VNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSEGP 720
Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 1201
+ R +++G++P LT + Q T+E
Sbjct: 721 E----------KDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTME 755
>ref|NP_005169.2| B-cell lymphoma 3 protein [Homo sapiens].
Length = 454
Score = 110 bits (276), Expect = 3e-24
Identities = 75/206 (36%), Positives = 103/206 (50%), Gaps = 1/206 (0%)
Frame = +2
Query: 542 PQEAPRGAE-PWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTP 718
P E P A+ + EDGD+ LH+A++ +V + L+ NNL+QTP
Sbjct: 116 PMEHPLSADIAMATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP 175
Query: 719 LHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHS 898
LHLAVIT P + L+ AG P D G T HLACE + L L
Sbjct: 176 LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD- 234
Query: 899 ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 1078
L+A NY+G T LH+A V+LL+ GAD++A + +GR+ L AV+ + +V
Sbjct: 235 -LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 293
Query: 1079 LLLKCGADVNRVTYQGYSPYQLTWGR 1156
LLL+ GA+VN Y G S GR
Sbjct: 294 LLLQHGANVNAQMYSGSSALHSASGR 319
>ref|NP_065825.1| E3 ubiquitin-protein ligase MIB1 [Homo sapiens].
Length = 1006
Score = 92.0 bits (227), Expect = 1e-18
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
+DGD +H A +E A+ +EV+ + DL N +N +QTPLH+AV ++ + LL
Sbjct: 495 KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550
Query: 770 EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
+ GC P L+D G+TPLH A + L G +T G LH
Sbjct: 551 DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610
Query: 899 -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
I+ +G+T LHLA+++ ++ + ELLV G A+++ Q N +TA
Sbjct: 611 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669
Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LHLAV+ Q+ +V LL++ GA ++ G +P
Sbjct: 670 LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702
Score = 55.8 bits (133), Expect = 1e-07
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 6/181 (3%)
Frame = +2
Query: 569 PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
PW + +DG + LHLA ++ + +V Q +L + QN QQT LHLAV
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
+I L+ AG +++D G+TPLH A L+ L Q + Q + + A +
Sbjct: 679 TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735
Query: 926 HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
+T + G I L + GAD++ + G++ L L D P+L L K
Sbjct: 736 NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PNLCKALAK 791
Query: 1091 C 1093
C
Sbjct: 792 C 792
>ref|NP_001005474.1| NF-kappa-B inhibitor zeta isoform b [Homo sapiens].
Length = 618
Score = 87.4 bits (215), Expect = 3e-17
Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 32/268 (11%)
Frame = +2
Query: 506 QMVKELREIRLEPQEAPRGAEPWKQQLTED--GDSFLHLAIIHEEKALTMEVVRQVKGDL 679
Q+ K L + ++E +E+ Q L++D GD+FLH+A+ +AL+ + R++ L
Sbjct: 312 QLGKSLFQWQVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNA-L 370
Query: 680 AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
L+ + + Q+ +AV NQ I + L+ G D G TPLH+ E+G +
Sbjct: 371 HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 430
Query: 860 VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
+ + + L+ATNY+G T LH A I
Sbjct: 431 AIQKGAVGSNQFVDLEATNYDGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKS 490
Query: 959 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQGY 1129
+ ++ L+ +GA V A++ +GRTALHLA + N +L+ L L+ C + VN Y G
Sbjct: 491 LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGN 550
Query: 1130 SPYQLTWGRPSTRIQQQLGQLTLENLQM 1213
+ + + +Q +L QL L M
Sbjct: 551 TALHV-----AASLQYRLTQLDAVRLLM 573
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,711,182
Number of extensions: 1850512
Number of successful extensions: 11324
Number of sequences better than 1.0e-05: 205
Number of HSP's gapped: 9798
Number of HSP's successfully gapped: 498
Length of query: 518
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 411
Effective length of database: 14,770,016
Effective search space: 6070476576
Effective search space used: 6070476576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001050
(1556 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035037.2| NF-kappa-B inhibitor alpha [Mus musculus]. 551 e-157
Alignment gi|NP_032716.2| NF-kappa-B inhibitor epsilon [Mus musculus]. 137 3e-32
Alignment gi|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus mus... 135 9e-32
Alignment gi|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isofo... 114 2e-25
Alignment gi|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isofo... 114 2e-25
Alignment gi|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform ... 114 2e-25
Alignment gi|NP_291079.2| B-cell lymphoma 3 protein homolog [Mus musculus]. 113 5e-25
Alignment gi|NP_659109.2| E3 ubiquitin-protein ligase MIB1 [Mus musculus]. 92 1e-18
Alignment gi|NP_001152867.1| NF-kappa-B inhibitor zeta isoform b [Mus mus... 87 4e-17
Alignment gi|NP_001152866.1| NF-kappa-B inhibitor zeta isoform a [Mus mus... 87 4e-17
>ref|NP_035037.2| NF-kappa-B inhibitor alpha [Mus musculus].
Length = 314
Score = 551 bits (1420), Expect = e-157
Identities = 273/314 (86%), Positives = 280/314 (89%)
Frame = +2
Query: 377 MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
MFQPA GQ+WAMEGPRD LKKERL+DDRHDSGLDSMKDEEYEQMVKELREIRL+PQEAP
Sbjct: 1 MFQPAGHGQDWAMEGPRDGLKKERLVDDRHDSGLDSMKDEEYEQMVKELREIRLQPQEAP 60
Query: 557 RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
AEPWKQQLTEDGDSFLHLAIIHEEK LTMEV+ QVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61 LAAEPWKQQLTEDGDSFLHLAIIHEEKPLTMEVIGQVKGDLAFLNFQNNLQQTPLHLAVI 120
Query: 737 TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
TNQP IAEALL+AGCDPELRDFRGNTPLHLACEQGCLASV VLTQ QHLHS+LQATN
Sbjct: 121 TNQPGIAEALLKAGCDPELRDFRGNTPLHLACEQGCLASVAVLTQTCTPQHLHSVLQATN 180
Query: 917 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
YNGHTCLHLASIHGYL IVE LV+LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181 YNGHTCLHLASIHGYLAIVEHLVTLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240
Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXL 1276
ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP L
Sbjct: 241 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEDEL 300
Query: 1277 PYDDCVLGGQRLTL 1318
PYDDCV GGQRLTL
Sbjct: 301 PYDDCVFGGQRLTL 314
>ref|NP_032716.2| NF-kappa-B inhibitor epsilon [Mus musculus].
Length = 364
Score = 137 bits (344), Expect = 3e-32
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 4/247 (1%)
Frame = +2
Query: 584 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
++EDGD+ LHLA+IHE ++ + + ++ L+ QNNL QT LHLAV +QP++ A
Sbjct: 119 ISEDGDTLLHLAVIHEAPSVLFCCLAFLPQEV--LDIQNNLYQTALHLAVHLDQPDVVRA 176
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR---GTQHLHSI-LQATNYNGHT 931
L+ G L+D G+T LH+AC + LA L + + G Q H + LQ N+ G
Sbjct: 177 LVLKGASRILQDQHGDTALHVACRRQNLACACCLLEEQPEPGRQLSHPLDLQLKNWQGLA 236
Query: 932 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 1111
CLH+A++ ++ELL+ GAD++ QE +G+TALHLAV+ Q LV LL+ GA V+
Sbjct: 237 CLHIATLQRNQPLIELLLQNGADIDVQEGTSGKTALHLAVETQERSLVQFLLQAGARVDA 296
Query: 1112 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXLPYDDC 1291
G +P L GR I L + ++L + LP+DD
Sbjct: 297 RMLNGCTPLHLAAGRGLNSISSTLCEAGADSLLL---NVEDETPQDLAEDLLSYLPFDDL 353
Query: 1292 VLGGQRL 1312
+ G+ L
Sbjct: 354 KISGKPL 360
>ref|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus musculus].
Length = 971
Score = 135 bits (340), Expect = 9e-32
Identities = 84/197 (42%), Positives = 115/197 (58%), Gaps = 3/197 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GDS LHLAIIH L +++ G ++ +N +N+L QTPLHLAVIT Q ++ E
Sbjct: 537 ENGDSVLHLAIIHLHAQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 596
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
LL G D L D GN+ LHLA ++G + +L + R L + N G +H+
Sbjct: 597 LLRVGADLSLLDRWGNSVLHLAAKEGHDRILSILLKSRKAAPL---IDHPNGEGLNAIHI 653
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
A + L + LLV+ GA+VNAQE +GRTALHLAV+ N L LLL+ A V+ TY
Sbjct: 654 AVMSNSLPCLLLLVAAGAEVNAQEQKSGRTALHLAVEYDNISLAGCLLLEGDAHVDSTTY 713
Query: 1121 QGYSPYQLTWGRPSTRI 1171
G +P + GR STR+
Sbjct: 714 DGTTPLHIAAGRGSTRL 730
>ref|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isoform b [Mus musculus].
Length = 900
Score = 114 bits (286), Expect = 2e-25
Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + + ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQH-LHSILQATNYNGHTCLH 940
LL+ G DP L D G++ LHLA G A + R H + IL ++ G +H
Sbjct: 546 LLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLYPVH 605
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 606 LAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNART 665
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 666 FAGNTPLHLAAGLGSPTLTRLL 687
Score = 57.0 bits (136), Expect = 4e-08
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEE------KALTMEVVRQVKGDLAFLNFQNNLQQTPL 721
GA+P L GDS LHLA+ +AL V L +F+ P+
Sbjct: 550 GADP--TLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLY---PV 604
Query: 722 HLAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHS 898
HLAV PE + L++ G + E + +G T LHLA E + +G++T LH+
Sbjct: 605 HLAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATE---MEELGLVTHL--VTKLHA 659
Query: 899 ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
+ A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 660 NVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697
>ref|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
Length = 899
Score = 114 bits (286), Expect = 2e-25
Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + + ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQH-LHSILQATNYNGHTCLH 940
LL+ G DP L D G++ LHLA G A + R H + IL ++ G +H
Sbjct: 546 LLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLYPVH 605
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 606 LAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNART 665
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 666 FAGNTPLHLAAGLGSPTLTRLL 687
Score = 57.0 bits (136), Expect = 4e-08
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEE------KALTMEVVRQVKGDLAFLNFQNNLQQTPL 721
GA+P L GDS LHLA+ +AL V L +F+ P+
Sbjct: 550 GADP--TLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLY---PV 604
Query: 722 HLAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHS 898
HLAV PE + L++ G + E + +G T LHLA E + +G++T LH+
Sbjct: 605 HLAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATE---MEELGLVTHL--VTKLHA 659
Query: 899 ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
+ A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 660 NVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697
>ref|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
Length = 899
Score = 114 bits (286), Expect = 2e-25
Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GD+ LHLAIIH + + ++ + L +N N+L QTPLHLAVIT Q +
Sbjct: 486 ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQH-LHSILQATNYNGHTCLH 940
LL+ G DP L D G++ LHLA G A + R H + IL ++ G +H
Sbjct: 546 LLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLYPVH 605
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
LA ++LLV GA+V A E GRTALHLA +++ LV+ L+ K A+VN T
Sbjct: 606 LAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNART 665
Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
+ G +P L G S + + L
Sbjct: 666 FAGNTPLHLAAGLGSPTLTRLL 687
Score = 57.0 bits (136), Expect = 4e-08
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
Frame = +2
Query: 560 GAEPWKQQLTEDGDSFLHLAIIHEE------KALTMEVVRQVKGDLAFLNFQNNLQQTPL 721
GA+P L GDS LHLA+ +AL V L +F+ P+
Sbjct: 550 GADP--TLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLY---PV 604
Query: 722 HLAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHS 898
HLAV PE + L++ G + E + +G T LHLA E + +G++T LH+
Sbjct: 605 HLAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATE---MEELGLVTHL--VTKLHA 659
Query: 899 ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
+ A + G+T LHLA+ G + LL+ GAD++A+
Sbjct: 660 NVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697
>ref|NP_291079.2| B-cell lymphoma 3 protein homolog [Mus musculus].
Length = 448
Score = 113 bits (282), Expect = 5e-25
Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 1/206 (0%)
Frame = +2
Query: 542 PQEAPRGAE-PWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTP 718
P E P A+ ++ EDGD+ LH+A++ A ++ K ++ NNL+QTP
Sbjct: 111 PMEHPLSADIAMATRVDEDGDTPLHIAVVQNNIAAVYRILSLFKLGSREVDVHNNLRQTP 170
Query: 719 LHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHS 898
LHLAVIT P++ L+ AG P D G T +HLACE + + L + +
Sbjct: 171 LHLAVITTLPDMVRLLVTAGASPMALDRHGQTAIHLACEHRSPSCLQALLDSATSGSVD- 229
Query: 899 ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 1078
L+ NY G T LH+A G V LL+ GAD++A + +GR+ L AV+ + ++V
Sbjct: 230 -LEVRNYEGLTALHVAVNTGCQEAVLLLLERGADIDAVDIKSGRSPLIHAVENNSLNMVQ 288
Query: 1079 LLLKCGADVNRVTYQGYSPYQLTWGR 1156
LLL GA+VN Y G S GR
Sbjct: 289 LLLLHGANVNAQMYSGSSALHSASGR 314
>ref|NP_659109.2| E3 ubiquitin-protein ligase MIB1 [Mus musculus].
Length = 1006
Score = 92.0 bits (227), Expect = 1e-18
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
+DGD +H A +E A+ +EV+ + DL N +N +QTPLH+AV ++ + LL
Sbjct: 495 KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550
Query: 770 EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
+ GC P L+D G+TPLH A + L G +T G LH
Sbjct: 551 DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610
Query: 899 -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
I+ +G+T LHLA+++ ++ + ELLV G A+++ Q N +TA
Sbjct: 611 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669
Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LHLAV+ Q+ +V LL++ GA ++ G +P
Sbjct: 670 LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702
Score = 55.5 bits (132), Expect = 1e-07
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Frame = +2
Query: 569 PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
PW + +DG + LHLA ++ + +V Q +L + QN QQT LHLAV
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
+I L+ AG +++D G+TPLH A L+ L Q + Q + + A +
Sbjct: 679 TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735
Query: 926 HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
+T + G I L + GAD++ + G++ L L D P L L K
Sbjct: 736 NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791
Query: 1091 C 1093
C
Sbjct: 792 C 792
>ref|NP_001152867.1| NF-kappa-B inhibitor zeta isoform b [Mus musculus].
Length = 629
Score = 87.0 bits (214), Expect = 4e-17
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Frame = +2
Query: 506 QMVKELREIRLEPQEAPRGAEPWKQQLTEDGD--SFLHLAIIHEEKALTMEVVRQVKGDL 679
Q+ K + ++E +E+ P Q L DGD +FLH+A+ +AL+ + R++ L
Sbjct: 323 QLGKSFFQWQVEQEESKLANIPQDQFLARDGDGDTFLHIAVAQGRRALSYVLARKMNA-L 381
Query: 680 AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
L+ + + Q+ +AV NQ I + L+ G D G TPLH+ E+G +
Sbjct: 382 HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 441
Query: 860 VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
+ + + L+ATNY+G T LH A +
Sbjct: 442 AIQKGAVRSNQFVDLEATNYDGLTPLHCAVVAHNAVVHELQRNRQSHSPEVQDLLLRNKS 501
Query: 959 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQG 1126
+ ++ L+ +GA V A++ +GRTALHLA + N +L+ L L+ C + VN Y G
Sbjct: 502 LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNG 560
>ref|NP_001152866.1| NF-kappa-B inhibitor zeta isoform a [Mus musculus].
Length = 728
Score = 87.0 bits (214), Expect = 4e-17
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Frame = +2
Query: 506 QMVKELREIRLEPQEAPRGAEPWKQQLTEDGD--SFLHLAIIHEEKALTMEVVRQVKGDL 679
Q+ K + ++E +E+ P Q L DGD +FLH+A+ +AL+ + R++ L
Sbjct: 422 QLGKSFFQWQVEQEESKLANIPQDQFLARDGDGDTFLHIAVAQGRRALSYVLARKMNA-L 480
Query: 680 AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
L+ + + Q+ +AV NQ I + L+ G D G TPLH+ E+G +
Sbjct: 481 HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 540
Query: 860 VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
+ + + L+ATNY+G T LH A +
Sbjct: 541 AIQKGAVRSNQFVDLEATNYDGLTPLHCAVVAHNAVVHELQRNRQSHSPEVQDLLLRNKS 600
Query: 959 YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQG 1126
+ ++ L+ +GA V A++ +GRTALHLA + N +L+ L L+ C + VN Y G
Sbjct: 601 LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNG 659
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,764,791
Number of extensions: 1526903
Number of successful extensions: 8507
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 7407
Number of HSP's successfully gapped: 361
Length of query: 518
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 412
Effective length of database: 12,433,743
Effective search space: 5122702116
Effective search space used: 5122702116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001050
(1556 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005150.1| NF-kappa-B inhibitor alpha [Sus scrofa]. 598 e-171
Alignment gi|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus ... 136 4e-32
Alignment gi|XP_003355945.1| PREDICTED: NF-kappa-B inhibitor beta-like [S... 108 8e-24
Alignment gi|XP_003356417.1| PREDICTED: e3 ubiquitin-protein ligase MIB1 ... 92 8e-19
Alignment gi|XP_003134273.2| PREDICTED: ankyrin-1-like, partial [Sus scro... 82 8e-16
Alignment gi|XP_003125839.1| PREDICTED: ankyrin repeat domain-containing ... 80 2e-15
Alignment gi|XP_003121353.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repe... 79 9e-15
Alignment gi|XP_001929357.3| PREDICTED: ankyrin-3 [Sus scrofa]. 78 1e-14
Alignment gi|XP_003129286.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin-2, p... 78 1e-14
Alignment gi|NP_001121934.1| ankycorbin [Sus scrofa]. 77 2e-14
>ref|NP_001005150.1| NF-kappa-B inhibitor alpha [Sus scrofa].
Length = 314
Score = 598 bits (1543), Expect = e-171
Identities = 296/314 (94%), Positives = 296/314 (94%)
Frame = +2
Query: 377 MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP
Sbjct: 1 MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 60
Query: 557 RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61 RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 120
Query: 737 TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN
Sbjct: 121 TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 180
Query: 917 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240
Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXL 1276
ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP L
Sbjct: 241 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEDEL 300
Query: 1277 PYDDCVLGGQRLTL 1318
PYDDCVLGGQRLTL
Sbjct: 301 PYDDCVLGGQRLTL 314
>ref|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus scrofa].
Length = 959
Score = 136 bits (342), Expect = 4e-32
Identities = 85/197 (43%), Positives = 116/197 (58%), Gaps = 3/197 (1%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
E+GDS LHLAIIH L +++ G ++ +N +N+L QTPLHLAVIT Q + E
Sbjct: 525 ENGDSVLHLAIIHLHAQLVRDLLEVTSGLISDEIINMRNDLYQTPLHLAVITKQEAVVED 584
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
LL AG D L D GN+ LHLA ++G + +L + + L + N G +H+
Sbjct: 585 LLRAGADLSLLDRLGNSVLHLAAKEGHDKILSILLKHKKAALL---INHPNGEGLNAIHV 641
Query: 944 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
A + L + LL++ GADVNAQE +GRTALHLAV+L N L LLL+ A V+ TY
Sbjct: 642 AMMSNSLPCLLLLMAAGADVNAQERKSGRTALHLAVELDNISLAGCLLLEGDAHVDSTTY 701
Query: 1121 QGYSPYQLTWGRPSTRI 1171
G +P + GR STR+
Sbjct: 702 DGTTPLHIAAGRGSTRL 718
Score = 52.4 bits (124), Expect = 7e-07
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Frame = +2
Query: 596 GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
G+S LHLA + +++ K L +N N +H+A+++N L+ A
Sbjct: 599 GNSVLHLAAKEGHDKILSILLKHKKAAL-LINHPNGEGLNAIHVAMMSNSLPCLLLLMAA 657
Query: 776 GCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
G D ++ + G T LHLA E ++ G L G H+ S T Y+G T LH+A+
Sbjct: 658 GADVNAQERKSGRTALHLAVELDNISLAGCLLL-EGDAHVDS----TTYDGTTPLHIAAG 712
Query: 953 HGYLGIVELLVSLGAD 1000
G + LL + GAD
Sbjct: 713 RGSTRLAALLKAAGAD 728
>ref|XP_003355945.1| PREDICTED: NF-kappa-B inhibitor beta-like [Sus scrofa].
Length = 318
Score = 108 bits (270), Expect = 8e-24
Identities = 78/226 (34%), Positives = 102/226 (45%), Gaps = 41/226 (18%)
Frame = +2
Query: 608 LHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDP 787
LHLA+IH+ + ++ + +L+ QN+L QT LHLA I + E L AG
Sbjct: 16 LHLAVIHQHEPF-LDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 74
Query: 788 ELRDFRGNTPLHLACEQGCLASVGVLTQPR--------------GTQHLHSI-------- 901
+ + G+T LHLAC A VL QPR G+ H
Sbjct: 75 LVAERGGHTALHLACRVRAHACACVLLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 134
Query: 902 -------------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 1024
L+A NY GHT LH+A IH +V LL GAD+N EP
Sbjct: 135 PEPDLEKEEDESEEDWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 194
Query: 1025 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 1162
GR+ LHLAV+ Q D++ LLLK GAD Y G +P RP+
Sbjct: 195 GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPN 240
Score = 54.3 bits (129), Expect = 2e-07
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Frame = +2
Query: 545 QEAPRGAEPWKQQLTED---GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNF-QNNLQQ 712
+E E WK QL + G + LH+A+IH++ E+VR ++ A LN + +
Sbjct: 141 KEEDESEEDWKLQLEAENYEGHTPLHVAVIHKDA----EMVRLLREAGADLNKPEPTCGR 196
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPL 820
+PLHLAV ++ E LL+AG DP R + G TPL
Sbjct: 197 SPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPL 232
>ref|XP_003356417.1| PREDICTED: e3 ubiquitin-protein ligase MIB1 [Sus scrofa].
Length = 1006
Score = 92.0 bits (227), Expect = 8e-19
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
+DGD +H A +E A+ +EV+ + DL N +N +QTPLH+AV ++ + LL
Sbjct: 495 KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550
Query: 770 EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
+ GC P L+D G+TPLH A + L G +T G LH
Sbjct: 551 DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610
Query: 899 -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
I+ +G+T LHLA+++ ++ + ELLV G A+++ Q N +TA
Sbjct: 611 AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669
Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LHLAV+ Q+ +V LL++ GA ++ G +P
Sbjct: 670 LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702
Score = 55.5 bits (132), Expect = 8e-08
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
Frame = +2
Query: 569 PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
PW + +DG + LHLA ++ + +V Q +L + QN QQT LHLAV
Sbjct: 622 PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
+I L+ AG +++D G+TPLH A L+ L Q + Q + + A +
Sbjct: 679 TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735
Query: 926 HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
+T + G I L + GAD++ + G++ L L D P L L K
Sbjct: 736 NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791
Query: 1091 C 1093
C
Sbjct: 792 C 792
>ref|XP_003134273.2| PREDICTED: ankyrin-1-like, partial [Sus scrofa].
Length = 1419
Score = 82.0 bits (201), Expect = 8e-16
Identities = 53/141 (37%), Positives = 74/141 (52%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A NQ E+A +LL+ G +G TPLHLA ++G V +L + +L
Sbjct: 598 TPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 657
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
N +G T LHL + G++ + ++L+ G V+A G T LH+A N L
Sbjct: 658 ------GNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRM-GYTPLHVASHYGNIKL 710
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
V LL+ ADVN T GYSP
Sbjct: 711 VKFLLQHQADVNAKTKLGYSP 731
Score = 78.2 bits (191), Expect = 1e-14
Identities = 58/194 (29%), Positives = 91/194 (46%)
Frame = +2
Query: 608 LHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDP 787
LH+A +A EV + + + A +N + QTPLH A + + LLE +P
Sbjct: 435 LHMAA----RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 490
Query: 788 ELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLG 967
L G+TPLH+A +G + + L + +Q G T LH+A+ +G +
Sbjct: 491 NLATTAGHTPLHIAAREGHVETALALLEKGASQ------ACMTKKGFTPLHVAAKYGKVR 544
Query: 968 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 1147
+ ELL+ A NA NG T LH+AV + D+V LLL G + + GY+P +
Sbjct: 545 VAELLLEHDAHPNAAGK-NGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIA 603
Query: 1148 WGRPSTRIQQQLGQ 1189
+ + + L Q
Sbjct: 604 AKQNQMEVARSLLQ 617
Score = 71.2 bits (173), Expect = 1e-12
Identities = 49/141 (34%), Positives = 71/141 (50%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+AV N +I + LL G P + G TPLH+A +Q + L Q G+ +
Sbjct: 565 TPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANA 624
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
S+ G T LHLA+ G+ +V LL+S A+ N +G T LHL + +
Sbjct: 625 ESV------QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPV 677
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
+L+K G V+ T GY+P
Sbjct: 678 ADVLIKHGVTVDATTRMGYTP 698
Score = 70.5 bits (171), Expect = 2e-12
Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Frame = +2
Query: 470 SGLDSMKDEEYEQMVKEL--REIRLEPQEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKAL 643
+GL E + +MV EL +EI LE T+ G++ LH+A + +
Sbjct: 41 NGLHLASKEGHVKMVVELLHKEIILETT-------------TKKGNTALHIAALAGQD-- 85
Query: 644 TMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLH 823
EVVR++ A +N Q+ TPL++A N E+ + LLE G + + G TPL
Sbjct: 86 --EVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLA 143
Query: 824 LACEQG-----------------CLASVGVLTQPRGTQHLHSILQ------ATNYNGHTC 934
+A +QG L ++ + + T+ +LQ + G T
Sbjct: 144 VALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTP 203
Query: 935 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 1114
LH+A+ + L + +LL++ GA VN P NG T LH+A N +V LLL GA +
Sbjct: 204 LHIAAHYENLNVAQLLLNRGASVNF-TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETR 262
Query: 1115 TYQGYSPYQLTWGRPSTRIQQQL 1183
T +P RI + L
Sbjct: 263 TKDELTPLHCAARNGHLRISEIL 285
Score = 69.3 bits (168), Expect = 5e-12
Identities = 48/144 (33%), Positives = 68/144 (47%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A + +AE LLE P G TPLH+A L V +L G+ H
Sbjct: 532 TPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPH- 590
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ +NG+T LH+A+ + + L+ G NA E G T LHLA + ++
Sbjct: 591 -----SPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEM 644
Query: 1073 VSLLLKCGADVNRVTYQGYSPYQL 1144
V+LLL A+ N G +P L
Sbjct: 645 VALLLSKQANGNLGNKSGLTPLHL 668
Score = 66.6 bits (161), Expect = 4e-11
Identities = 45/141 (31%), Positives = 72/141 (51%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A +A+ LL G G TPLH+A +G + V +L RG Q
Sbjct: 202 TPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLD-RGAQ-- 258
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
++ + T LH A+ +G+L I E+L+ GA + A+ NG + +H+A + D
Sbjct: 259 ---IETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTK-NGLSPIHMAAQGDHLDC 314
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
V LLL+ A+++ +T +P
Sbjct: 315 VRLLLQYNAEIDDITLDHLTP 335
Score = 65.5 bits (158), Expect = 8e-11
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCL----------ASVGV 862
TPLH+A +A+ LL+ G P R G TPLH+AC++ + AS+
Sbjct: 334 TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDA 393
Query: 863 LTQPRGTQHLH------------SILQ------ATNYNGHTCLHLASIHGYLGIVELLVS 988
+T+ G LH ++LQ +N T LH+A+ G+ + + L+
Sbjct: 394 VTE-SGLTPLHVASFMGHLPIVKNLLQRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 452
Query: 989 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 1144
A VNA+ + +T LH A + + ++V LLL+ A+ N T G++P +
Sbjct: 453 NKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 503
Score = 60.1 bits (144), Expect = 3e-09
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 27/217 (12%)
Frame = +2
Query: 566 EPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
+P L++ G + LH+A +E + V + + A +NF TPLH+A
Sbjct: 190 DPNPDVLSKTGFTPLHIAAHYEN----LNVAQLLLNRGASVNFTPQNGITPLHIASRRGN 245
Query: 746 PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---------PRGTQHLHS 898
+ LL+ G E R TPLH A G L +L G +H
Sbjct: 246 VIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHM 305
Query: 899 ILQATN---------YNGH---------TCLHLASIHGYLGIVELLVSLGADVNAQEPCN 1024
Q + YN T LH+A+ G+ + ++L+ GA N++ N
Sbjct: 306 AAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSR-ALN 364
Query: 1025 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
G T LH+A + ++ LLLK GA ++ VT G +P
Sbjct: 365 GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTP 401
Score = 50.1 bits (118), Expect = 3e-06
Identities = 38/120 (31%), Positives = 54/120 (45%)
Frame = +2
Query: 689 NFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 868
N N TPLHL +A+ L++ G + G TPLH+A G + V L
Sbjct: 656 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 715
Query: 869 QPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
Q + + A G++ LH A+ G+ IV LL+ GA N + NG T L +A
Sbjct: 716 QHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSNGTTPLAIA 768
>ref|XP_003125839.1| PREDICTED: ankyrin repeat domain-containing protein 35 [Sus scrofa].
Length = 995
Score = 80.5 bits (197), Expect = 2e-15
Identities = 66/214 (30%), Positives = 103/214 (48%)
Frame = +2
Query: 488 KDEEYEQMVKELREIRLEPQEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQV 667
+D++ + V+ R+ + + A P K L +G S HLA K LT E + +
Sbjct: 20 RDQKLLEAVQRGDVGRVAALASRKSARPTK--LDSNGQSPFHLAA---SKGLT-ECLTIL 73
Query: 668 KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCL 847
+ A +N +N T LHLA I+ QP+ + LL+ G + + D +PLH A GC
Sbjct: 74 LANGADINSKNEDGSTALHLATISCQPQCVKVLLQHGANEDAVDVENRSPLHWAASSGCA 133
Query: 848 ASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 1027
+SV +L + L + G T L +AS+ G+ I L+ GA VN + N
Sbjct: 134 SSVLLLCDH------EAFLDVLDNGGRTPLMIASLGGHAAICSQLLQRGARVNITDK-ND 186
Query: 1028 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 1129
++AL LA + + ++ LLL GAD V G+
Sbjct: 187 KSALILACEKGSAEVAELLLSHGADAGAVDSTGH 220
>ref|XP_003121353.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing
protein 6-like [Sus scrofa].
Length = 727
Score = 78.6 bits (192), Expect = 9e-15
Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
Frame = +2
Query: 575 KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 754
K +T+ G + LHLA ++ ++++ + DL + Q++ QT LH A + E+
Sbjct: 35 KVAVTKHGRTALHLAA-NKGHLSVVQILLKAGCDL---DVQDDGDQTALHRATVVGNTEV 90
Query: 755 AEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---------PRGTQHLHSILQ 907
AL++ GC + +D GNT LH A G S +L + G LH Q
Sbjct: 91 IAALIQEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNKAGNTALHLACQ 150
Query: 908 AT------------------NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 1033
+ N G TCLH+A+ + +L I++LL+S V+ + G T
Sbjct: 151 NSHAQSTRVLLLGGSRADLKNNAGDTCLHVAARYNHLSIIKLLLSAFCSVHEKNQA-GDT 209
Query: 1034 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 1141
ALH+A L + +V +LL+ GAD V G +P +
Sbjct: 210 ALHIAAALNHKKVVKILLEAGADGTIVNNAGQTPLE 245
>ref|XP_001929357.3| PREDICTED: ankyrin-3 [Sus scrofa].
Length = 1855
Score = 78.2 bits (191), Expect = 1e-14
Identities = 52/141 (36%), Positives = 74/141 (52%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A NQ +IA LLE G D +G +HLA ++G + V +L +L
Sbjct: 603 TPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNL 662
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+N +G T LHLA+ + + E+LV+ GA V+AQ G T LH+ N +
Sbjct: 663 ------SNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKM-GYTPLHVGCHYGNIKI 715
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
V+ LL+ A VN T GY+P
Sbjct: 716 VNFLLQHSAKVNAKTKNGYTP 736
Score = 75.1 bits (183), Expect = 1e-13
Identities = 56/183 (30%), Positives = 84/183 (45%)
Frame = +2
Query: 596 GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
G++ LH+A ++ EVVR + D A + + QTPLH++ + +I + LL+
Sbjct: 436 GETALHMAA----RSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQ 491
Query: 776 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIH 955
G P G TPLHL+ +G V G L T G T LH+A+ +
Sbjct: 492 GASPNAATTSGYTPLHLSAREG-HEDVAAFLLDHGAS-----LSITTKKGFTPLHVAAKY 545
Query: 956 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
G L + LL+ A +A +G T LH+A N + LLL GA + GY+P
Sbjct: 546 GKLEVANLLLQKSASPDAAGK-SGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTP 604
Query: 1136 YQL 1144
+
Sbjct: 605 LHI 607
Score = 72.8 bits (177), Expect = 5e-13
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCL----------ASVGV 862
T LH+A ++A+ LL+ +P + G TPLH+AC++ + AS+
Sbjct: 339 TALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQA 398
Query: 863 LTQPRGTQ--------HLHSILQ---------ATNYNGHTCLHLASIHGYLGIVELLVSL 991
+T+ T H++ + Q TN G T LH+A+ G +V LV
Sbjct: 399 VTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQD 458
Query: 992 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 1147
GA V A+ + +T LH++ L D+V LL+ GA N T GY+P L+
Sbjct: 459 GAQVEAKAK-DDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLS 509
Score = 72.8 bits (177), Expect = 5e-13
Identities = 52/165 (31%), Positives = 78/165 (47%)
Frame = +2
Query: 650 EVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLA 829
++V+Q+ A N TPLHL+ ++A LL+ G + +G TPLH+A
Sbjct: 483 DIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVA 542
Query: 830 CEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 1009
+ G L +L Q + A +G T LH+A+ + + LL+ GA +A
Sbjct: 543 AKYGKLEVANLLLQKSASP------DAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHA 596
Query: 1010 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 1144
NG T LH+A D+ + LL+ GAD N VT QG + L
Sbjct: 597 AAK-NGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHL 640
Score = 68.2 bits (165), Expect = 1e-11
Identities = 48/144 (33%), Positives = 67/144 (46%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A + E+A LL+ P+ G TPLH+A +L + H
Sbjct: 537 TPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPH- 595
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
A NG+T LH+A+ + I L+ GAD NA G ++HLA + D+
Sbjct: 596 -----AAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTR-QGIASVHLAAQEGHVDM 649
Query: 1073 VSLLLKCGADVNRVTYQGYSPYQL 1144
VSLLL A+VN G +P L
Sbjct: 650 VSLLLSRNANVNLSNKSGLTPLHL 673
Score = 65.1 bits (157), Expect = 1e-10
Identities = 45/141 (31%), Positives = 68/141 (48%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TP+H+A I L+ G P + RG T LH+A G V L Q G Q
Sbjct: 405 TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQD-GAQ-- 461
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
++A + T LH+++ G IV+ L+ GA NA +G T LHL+ + D+
Sbjct: 462 ---VEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNA-ATTSGYTPLHLSAREGHEDV 517
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
+ LL GA ++ T +G++P
Sbjct: 518 AAFLLDHGASLSITTKKGFTP 538
Score = 64.3 bits (155), Expect = 2e-10
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 23/206 (11%)
Frame = +2
Query: 587 TEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 766
T+ G++ LH+A + A EVV+ + + A +N Q+ TPL++A N E+ + L
Sbjct: 74 TKKGNTALHIASL----AGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFL 129
Query: 767 LEAGCDPELRDFRGNTPLHLACEQG-----------------CLASVGVLTQPRGTQHLH 895
L+ G L G TPL +A +QG L ++ + + T+
Sbjct: 130 LDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAA 189
Query: 896 SILQATN------YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 1057
+LQ N +G T LH+A+ +G + + LL++ A V+ N T LH+A
Sbjct: 190 LLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTAR-NDITPLHVASKR 248
Query: 1058 QNPDLVSLLLKCGADVNRVTYQGYSP 1135
N ++V LLL GA ++ T G +P
Sbjct: 249 GNANMVKLLLDRGAKIDAKTRDGLTP 274
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/123 (33%), Positives = 66/123 (53%)
Frame = +2
Query: 767 LEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLA 946
++ G D + + G LHLA ++G + V L Q + + A G+T LH+A
Sbjct: 31 IKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREAS------VDAATKKGNTALHIA 84
Query: 947 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 1126
S+ G +V++LV+ GA+VNAQ NG T L++A + ++V LL GA + T G
Sbjct: 85 SLAGQAEVVKVLVTNGANVNAQSQ-NGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDG 143
Query: 1127 YSP 1135
++P
Sbjct: 144 FTP 146
Score = 63.2 bits (152), Expect = 4e-10
Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
Frame = +2
Query: 584 LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
+T G + +HLA +++V + A +N N TPLHLA ++ +AE
Sbjct: 630 VTRQGIASVHLAAQEGH----VDMVSLLLSRNANVNLSNKSGLTPLHLAAQEDRVNVAEV 685
Query: 764 LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSI-LQATNYNGHTCLH 940
L+ G + + G TPLH+ C G + V L Q HS + A NG+T LH
Sbjct: 686 LVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQ-------HSAKVNAKTKNGYTPLH 738
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
A+ G+ I+ +L+ A N + NG TAL +A
Sbjct: 739 QAAQQGHTHIINVLLQNDASPN-ELTVNGNTALAIA 773
Score = 58.9 bits (141), Expect = 7e-09
Identities = 47/157 (29%), Positives = 73/157 (46%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH + ++ E LL+ + G +PLH+A + L V +L Q H
Sbjct: 273 TPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQ-----HN 327
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ TN + T LH+A+ G+ + ++L+ A+ NA+ NG T LH+A +
Sbjct: 328 VPVDDVTN-DYLTALHVAAHCGHYKVAKVLLDKKANPNAKA-LNGFTPLHIACKKNRIKV 385
Query: 1073 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 1183
+ LLLK GA + VT G +P + I QL
Sbjct: 386 MELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQL 422
Score = 49.3 bits (116), Expect = 6e-06
Identities = 46/185 (24%), Positives = 82/185 (44%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
++G + LHLA K +EVV ++ A ++ T LH+A + Q E+ + L+
Sbjct: 42 QNGLNALHLA----SKEGHVEVVSELLQREASVDAATKKGNTALHIASLAGQAEVVKVLV 97
Query: 770 EAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLAS 949
G + + G TPL++A ++ L V L +Q L +G T L +A
Sbjct: 98 TNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSL------ATEDGFTPLAVAL 151
Query: 950 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 1129
G+ +V LL+ + P ALH+A + +LLL+ + + + G+
Sbjct: 152 QQGHDQVVSLLLENDTKGKVRLP-----ALHIAARKDDTKAAALLLQNDNNADVESKSGF 206
Query: 1130 SPYQL 1144
+P +
Sbjct: 207 TPLHI 211
>ref|XP_003129286.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin-2, partial [Sus scrofa].
Length = 4181
Score = 78.2 bits (191), Expect = 1e-14
Identities = 55/165 (33%), Positives = 80/165 (48%)
Frame = +2
Query: 650 EVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLA 829
E+V+ + +A + TPLH++ Q ++A LLEAG L +G TPLH+A
Sbjct: 16 EIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVA 75
Query: 830 CEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 1009
+ G L +L Q R + + NG T LH+A+ + + LL+ GA +A
Sbjct: 76 AKYGSLDVAKLLLQRR------AAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHA 129
Query: 1010 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 1144
NG T LH+A + S LL GA+ N VT QG +P L
Sbjct: 130 TAK-NGYTPLHIAAKKNQMQIASTLLNYGAETNIVTKQGVTPLHL 173
Score = 73.2 bits (178), Expect = 4e-13
Identities = 56/179 (31%), Positives = 90/179 (50%)
Frame = +2
Query: 590 EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
++G + LH+A ++ + + + ++ KG +N TPLH+A NQ +IA LL
Sbjct: 99 KNGLTPLHVAAHYDNQKVALLLLE--KGASPHATAKNGY--TPLHIAAKKNQMQIASTLL 154
Query: 770 EAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLAS 949
G + + +G TPLHLA ++G V +L H+ + +G T LHLA+
Sbjct: 155 NYGAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHM------STKSGLTSLHLAA 208
Query: 950 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 1126
+ + ++L GAD +A G T L +A N +V+ LLK GA+VN T +G
Sbjct: 209 QEDKVNVADILTKHGADQDAHTKL-GYTPLIVACHYGNVKMVNFLLKQGANVNAKTKRG 266
Score = 70.5 bits (171), Expect = 2e-12
Identities = 48/159 (30%), Positives = 75/159 (47%)
Frame = +2
Query: 707 QQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQ 886
+QTPLH+A + EI + LL+ P+ G TPLH++ +G + VL + G
Sbjct: 2 EQTPLHIASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLE-AGAA 60
Query: 887 HLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 1066
H G T LH+A+ +G L + +LL+ A ++ NG T LH+A N
Sbjct: 61 H-----SLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGK-NGLTPLHVAAHYDNQ 114
Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 1183
+ LLL+ GA + GY+P + + +I L
Sbjct: 115 KVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTL 153
Score = 70.1 bits (170), Expect = 3e-12
Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 2/185 (1%)
Frame = +2
Query: 587 TEDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 760
T+ G++ LH+A +A +EVVR + G L +++ + L A N ++ E
Sbjct: 263 TKRGETALHMAA----RAGQVEVVRCLLRNGALVDARARSDSNASFLRAARAGNLDKVVE 318
Query: 761 ALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLH 940
L+ G D + G LHLA ++G VG++ + G S + + G+T LH
Sbjct: 319 -YLKGGIDINTCNQNGLNALHLAAKEG---HVGLVQELLGRG---SSVDSATKKGNTALH 371
Query: 941 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 1120
+AS+ G +V++LV GA++NAQ NG T L++A + D+V LL+ GA+ + T
Sbjct: 372 IASLAGQAEVVKVLVKEGANINAQSQ-NGFTPLYMAAQENHIDVVKYLLENGANQSTATE 430
Query: 1121 QGYSP 1135
G++P
Sbjct: 431 DGFTP 435
Score = 69.7 bits (169), Expect = 4e-12
Identities = 46/141 (32%), Positives = 69/141 (48%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A + ++A LLE G P G TPLH+A ++ + L ++
Sbjct: 103 TPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNYGAETNI 162
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
G T LHLAS G+ +V LL+ GA+++ +G T+LHLA ++
Sbjct: 163 ------VTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTK-SGLTSLHLAAQEDKVNV 215
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
+L K GAD + T GY+P
Sbjct: 216 ADILTKHGADQDAHTKLGYTP 236
Score = 68.6 bits (166), Expect = 9e-12
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
Frame = +2
Query: 587 TEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 766
T+ G + LHLA E+K +++ + D + L TPL +A ++ L
Sbjct: 197 TKSGLTSLHLAA-QEDKVNVADILTKHGADQ---DAHTKLGYTPLIVACHYGNVKMVNFL 252
Query: 767 LEAGCDPELRDFRGNTPLHLACEQG------CLASVGVLTQPRGTQHLH-SILQAT---- 913
L+ G + + RG T LH+A G CL G L R + S L+A
Sbjct: 253 LKQGANVNAKTKRGETALHMAARAGQVEVVRCLLRNGALVDARARSDSNASFLRAARAGN 312
Query: 914 -----------------NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 1042
N NG LHLA+ G++G+V+ L+ G+ V++ G TALH
Sbjct: 313 LDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATK-KGNTALH 371
Query: 1043 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
+A ++V +L+K GA++N + G++P
Sbjct: 372 IASLAGQAEVVKVLVKEGANINAQSQNGFTP 402
Score = 67.0 bits (162), Expect = 3e-11
Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Frame = +2
Query: 587 TEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 766
T+ G++ LH+A + A EVV+ + + A +N Q+ TPL++A N ++ + L
Sbjct: 363 TKKGNTALHIASL----AGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYL 418
Query: 767 LEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ--PRGTQHLHSI------------- 901
LE G + G TPL +A +QG +V +L + +G L ++
Sbjct: 419 LENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAA 478
Query: 902 ----------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 1033
+ T +G T LH+A+ +G + + LL++ GA V+ NG T
Sbjct: 479 LLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTAR-NGIT 537
Query: 1034 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
LH+A N ++V LLL G ++ T G +P
Sbjct: 538 PLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTP 571
Score = 63.5 bits (153), Expect = 3e-10
Identities = 42/132 (31%), Positives = 68/132 (51%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
T LH+A + + LL+ +P R G TPLH+AC++ + + +L +
Sbjct: 636 TALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVK------Y 689
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ +QA +G T +H+A+ G+L IV LL+ GA + G TALH+A ++
Sbjct: 690 GASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTN-IRGETALHMAARAGQVEV 748
Query: 1073 VSLLLKCGADVN 1108
V LL+ GA V+
Sbjct: 749 VRCLLRNGALVD 760
Score = 62.0 bits (149), Expect = 9e-10
Identities = 43/141 (30%), Positives = 68/141 (48%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH A + ++ E LLE G R G +PLH+A + + V L Q +
Sbjct: 570 TPLHCAARSGHDQVVELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKAP--- 626
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ + T LH+A+ G+ + +LL+ A+ NA+ NG T LH+A +
Sbjct: 627 ---VDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNAR-ALNGFTPLHIACKKNRIKV 682
Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
+ LL+K GA + +T G +P
Sbjct: 683 MELLVKYGASIQAITESGLTP 703
Score = 58.9 bits (141), Expect = 7e-09
Identities = 47/135 (34%), Positives = 68/135 (50%)
Frame = +2
Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
TPLH+A +A LL G + G TPLH+A ++G V +L RG Q
Sbjct: 504 TPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLD-RGGQ-- 560
Query: 893 HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
+ A +G T LH A+ G+ +VELL+ GA + A+ NG + LH+A + +
Sbjct: 561 ---IDAKTRDGLTPLHCAARSGHDQVVELLLERGAPLLARTK-NGLSPLHMAAQGDHVEC 616
Query: 1073 VSLLLKCGADVNRVT 1117
V LL+ A V+ VT
Sbjct: 617 VKHLLQHKAPVDDVT 631
>ref|NP_001121934.1| ankycorbin [Sus scrofa].
Length = 980
Score = 77.4 bits (189), Expect = 2e-14
Identities = 50/146 (34%), Positives = 80/146 (54%)
Frame = +2
Query: 695 QNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQP 874
Q+ + LHLA + E + LL++ C E D G T LH A QGCL +V VL +
Sbjct: 82 QDTAGHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEH 141
Query: 875 RGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 1054
+ +L + +G+ L LA +G+ + L+ GADVN+++ NGRTAL LA +
Sbjct: 142 KSPINLKDL------DGNIPLLLAVQNGHSEVCRFLLDHGADVNSRDK-NGRTALMLACE 194
Query: 1055 LQNPDLVSLLLKCGADVNRVTYQGYS 1132
+ + ++V L+ GAD++ V G++
Sbjct: 195 IGSSNIVEALITKGADLSLVDSLGHN 220
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,028,065
Number of extensions: 1248154
Number of successful extensions: 7132
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 6438
Number of HSP's successfully gapped: 221
Length of query: 518
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 415
Effective length of database: 8,779,541
Effective search space: 3643509515
Effective search space used: 3643509515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001050
(1556 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1168 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 1168 bits (589), Expect = 0.0
Identities = 601/605 (99%)
Strand = Plus / Plus
Query: 1 ccgggggagggggccgggtcgggaggactttccagccactcagcgtgcattaaaaagttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417309 ccgggggagggggccgggtcgggaggactttccagccactcagcgtgcattaaaaagttc 69417368
Query: 61 cctgtacatgaccccagtggctcatcgcagggagtttctctgatgaacccgggcgcgggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417369 cctgtacatgaccccagtggctcatcgcagggagtttctctgatgaacccgggcgcgggg 69417428
Query: 121 tttaggcttctttttcccccagcagaggacgaggccagttctcttttctggtctgactgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417429 tttaggcttctttttcccccagcagaggacgaggccagttctcttttctggtctgactgg 69417488
Query: 181 cttggaaattccccgagcttgaccccgcccaggagaaatcccctgccagcgtttataggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417489 cttggaaattccccgagcttgaccccgcccaggagaaatcccctgccagcgtttataggg 69417548
Query: 241 cgccgcggcggcgctgccgactgcacaacagtccgaggccatcgtcccgcccgcccgagc 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 69417549 cgccgcggcggcgctgccgagcccacaacagtccgaggccatcgtcccgcccgcccgagc 69417608
Query: 301 caccgcgagcagccagcgcgccgcgcagcctgtggcccgcgcacctagggagcagcgccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417609 caccgcgagcagccagcgcgccgcgcagcctgtggcccgcgcacctagggagcagcgccc 69417668
Query: 361 aagccctcatcgcgccatgttccagcccgcagagcccggccaggagtgggccatggaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417669 aagccctcatcgcgccatgttccagcccgcagagcccggccaggagtgggccatggaggg 69417728
Query: 421 gccccgggacgcgctcaagaaggagcggctactggacgaccgccacgacagcggcctgga 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 69417729 gccccgggacgcgctcaagaaggagcggctactggatgaccgccacgacagcggcctgga 69417788
Query: 481 ctccatgaaggacgaggagtacgagcagatggtgaaggagctgcgcgagatccgcctcga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417789 ctccatgaaggacgaggagtacgagcagatggtgaaggagctgcgcgagatccgcctcga 69417848
Query: 541 gccgcaggaggcgccccgcggcgccgagccctggaagcagcagctcaccgaggacggaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417849 gccgcaggaggcgccccgcggcgccgagccctggaagcagcagctcaccgaggacggaga 69417908
Query: 601 ctcgt 605
|||||
Sbjct: 69417909 ctcgt 69417913
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 1009 tcaggagccctgcaatggccgaaccgccctgcatcttgcggtggacctgcagaatcccga 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419649 tcaggagccctgcaatggccgaaccgccctgcatcttgcggtggacctgcagaatcccga 69419708
Query: 1069 cctggtgtcgctcttgttgaagtgtggggctgatgtcaacagagtcacctaccagggcta 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419709 cctggtgtcgctcttgttgaagtgtggggctgatgtcaacagagtcacctaccagggcta 69419768
Query: 1129 ctccccgtaccagctcacctggggccgcccaagcactcggatacagcagcagctgggcca 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419769 ctccccgtaccagctcacctggggccgcccaagcactcggatacagcagcagctgggcca 69419828
Query: 1189 gctgaccctagaaaacctccagatgcttccagagagcgaggatgaggagagctatgacac 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419829 gctgaccctagaaaacctccagatgcttccagagagcgaggatgaggagagctatgacac 69419888
Query: 1249 ggagtcagagttcacagaggatgag 1273
|||||||||||||||||||||||||
Sbjct: 69419889 ggagtcagagttcacagaggatgag 69419913
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 711 agactccactccacttggcggtgatcaccaaccagccagaaatcgctgaggcacttctgg 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69418944 agactccactccacttggcggtgatcaccaaccagccagaaatcgctgaggcacttctgg 69419003
Query: 771 aagctggctgtgatcctgagctccgagactttcgaggaaatacccctctacaccttgcct 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419004 aagctggctgtgatcctgagctccgagactttcgaggaaatacccctctacaccttgcct 69419063
Query: 831 gtgagcagggctgcctggccagtgtgggagtcctgactcagccccgcgggacccagcacc 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419064 gtgagcagggctgcctggccagtgtgggagtcctgactcagccccgcgggacccagcacc 69419123
Query: 891 tccactccattctgcaggccaccaactacaatgg 924
||||||||||||||||||||||||||||||||||
Sbjct: 69419124 tccactccattctgcaggccaccaactacaatgg 69419157
Score = 232 bits (117), Expect = 5e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1272 agctgccctatgacgactgcgtgcttggaggccagcgcctgacgttatgagctttggaaa 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69420271 agctgccctatgacgactgcgtgcttggaggccagcgcctgacgttatgagctttggaaa 69420330
Query: 1332 gtgtctaaaagaccatggacttgtacatttgtacaaaatcaagagttttatttttct 1388
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69420331 gtgtctaaaagaccatggacttgtacatttgtacaaaatcaagagttttatttttct 69420387
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 604 gttcctgcacttggccatcatccatgaagagaaggcactgaccatggaagtggtccgcca 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69418486 gttcctgcacttggccatcatccatgaagagaaggcactgaccatggaagtggtccgcca 69418545
Query: 664 agtgaagggagatctggcttttcttaacttccagaacaacctgcagcag 712
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69418546 agtgaagggagatctggcttttcttaacttccagaacaacctgcagcag 69418594
Score = 196 bits (99), Expect = 3e-47
Identities = 130/135 (96%), Gaps = 4/135 (2%)
Strand = Plus / Plus
Query: 1426 tatacttataaccacaccgcacactgcctggcctgaaacattttgctctggtgga-tagc 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 69420425 tatacttataaccacaccgcacactgcctggcctgaaacattttgctctggtggattagc 69420484
Query: 1485 cccgattttg-tattcttgtgaactttggaaa-gcgcc-aggaggatcatcggaatgcaa 1541
|||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 69420485 cccgattttgttattcttgtgaactttggaaaggcgccaaggaggatcatcggaatgcag 69420544
Query: 1542 agagaacctctttta 1556
|||||||||||||||
Sbjct: 69420545 agagaacctctttta 69420559
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 923 ggccacacatgtctgcacttagcctcgatccatggctacctgggcattgtggagctgttg 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419445 ggccacacatgtctgcacttagcctcgatccatggctacctgggcattgtggagctgttg 69419504
Query: 983 gtgtctttgggtgctgatgtcaacgctcagg 1013
|||||||||||||||||||||||||||||||
Sbjct: 69419505 gtgtctttgggtgctgatgtcaacgctcagg 69419535
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,983,548
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 7
Length of query: 1556
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1535
Effective length of database: 2,808,413,156
Effective search space: 4310914194460
Effective search space used: 4310914194460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)