Animal-Genome cDNA 20110601C-001050


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001050
         (1556 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039333.1| NF-kappa-B inhibitor alpha [Bos taurus].          595   e-170
Alignment   gi|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos ...   135   8e-32
Alignment   gi|NP_001124218.1| NF-kappa-B inhibitor epsilon [Bos taurus].        134   2e-31
Alignment   gi|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos ...   113   5e-25
Alignment   gi|NP_001192922.1| B-cell CLL/lymphoma 3 [Bos taurus].               110   4e-24
Alignment   gi|XP_002695135.1| PREDICTED: B-cell CLL/lymphoma 3-like [Bos t...   110   4e-24
Alignment   gi|NP_001192959.1| mindbomb homolog 1 [Bos taurus].                   92   1e-18
Alignment   gi|XP_002697767.1| PREDICTED: mindbomb homolog 1 (Drosophila) [...    92   1e-18
Alignment   gi|NP_777151.1| NF-kappa-B inhibitor zeta [Bos taurus].               84   3e-16
Alignment   gi|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bo...    83   8e-16

>ref|NP_001039333.1| NF-kappa-B inhibitor alpha [Bos taurus].
          Length = 314

 Score =  595 bits (1534), Expect = e-170
 Identities = 294/314 (93%), Positives = 295/314 (93%)
 Frame = +2

Query: 377  MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
            MFQPAEPGQ+WAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP
Sbjct: 1    MFQPAEPGQDWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 60

Query: 557  RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
            RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61   RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 120

Query: 737  TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
            TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN
Sbjct: 121  TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 180

Query: 917  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
            YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240

Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXL 1276
            ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ LP                  L
Sbjct: 241  ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQTLPESEDEESYDTESEFTEDEL 300

Query: 1277 PYDDCVLGGQRLTL 1318
            PYDDCVLGGQRLTL
Sbjct: 301  PYDDCVLGGQRLTL 314


>ref|NP_001069877.1| nuclear factor NF-kappa-B p105 subunit [Bos taurus].
          Length = 969

 Score =  135 bits (341), Expect = 8e-32
 Identities = 84/197 (42%), Positives = 115/197 (58%), Gaps = 3/197 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GDS LHLAIIH    L  +++    G ++   +N +N+L QTPLHLAVIT Q  + E 
Sbjct: 538  ENGDSVLHLAIIHLHNQLVRDLLEVTSGLISDEIINMRNDLYQTPLHLAVITRQEAVVED 597

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
            LL AG D  L D  GN+ LHLA ++G    +G+L + +    L   +   N  G   +H+
Sbjct: 598  LLRAGADLSLLDRLGNSVLHLAAKEGHDKILGILLKHKKAAQL---IDHPNGEGLNAIHV 654

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
            A +   L  + LL++ GADVNAQE  +GRTALHLAV+  N  L   L L+  A V+  TY
Sbjct: 655  AMMSNSLPCLLLLMAAGADVNAQERKSGRTALHLAVEHDNVSLAGCLXLEGDAHVDSTTY 714

Query: 1121 QGYSPYQLTWGRPSTRI 1171
             G +P  +  GR STR+
Sbjct: 715  DGTTPLHIAAGRGSTRL 731



 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
 Frame = +2

Query: 596  GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
            G+S LHLA   E     + ++ + K     ++  N      +H+A+++N       L+ A
Sbjct: 612  GNSVLHLAA-KEGHDKILGILLKHKKAAQLIDHPNGEGLNAIHVAMMSNSLPCLLLLMAA 670

Query: 776  GCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
            G D   ++ + G T LHLA E   ++  G L    G  H+ S    T Y+G T LH+A+ 
Sbjct: 671  GADVNAQERKSGRTALHLAVEHDNVSLAGCLXL-EGDAHVDS----TTYDGTTPLHIAAG 725

Query: 953  HGYLGIVELLVSLGAD 1000
             G   +  LL + GAD
Sbjct: 726  RGSTRLAALLKAAGAD 741


>ref|NP_001124218.1| NF-kappa-B inhibitor epsilon [Bos taurus].
          Length = 362

 Score =  134 bits (337), Expect = 2e-31
 Identities = 82/212 (38%), Positives = 123/212 (58%), Gaps = 4/212 (1%)
 Frame = +2

Query: 584  LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            ++EDGD+ +HLA+IHE  A+ +  +  +  ++  L+ QNNL QT LHLAV  +QP    A
Sbjct: 117  ISEDGDTLIHLAVIHEAPAVLLYCLALLPQEV--LDIQNNLYQTALHLAVHLDQPGAVRA 174

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR---GTQHLHSI-LQATNYNGHT 931
            L+  G    L+D  G+T LH+AC++  LA    L + +   G    HS+ LQ  N+ G  
Sbjct: 175  LVLKGASRVLQDRHGDTALHVACQRQHLACARCLLEGQPEPGRGPPHSLDLQLQNWQGLA 234

Query: 932  CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 1111
            CLH+A++     ++ELL+  GAD++ QE  +G+TALHLAV+ Q   LV  LL+ GA V+ 
Sbjct: 235  CLHIATLQRNRPLMELLLQNGADIDVQEGTSGKTALHLAVETQERGLVQFLLQAGARVDA 294

Query: 1112 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 1207
                G +P  L  GR  + I   L +   ++L
Sbjct: 295  RMLNGCTPLHLAAGRGLSGISSTLCEAGADSL 326


>ref|NP_001095571.1| nuclear factor NF-kappa-B p100 subunit [Bos taurus].
          Length = 900

 Score =  113 bits (282), Expect = 5e-25
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH +  +  ++   +     L  +N  N+L QTPLHLAVIT Q ++   
Sbjct: 487  ENGDTPLHLAIIHGQTTVIEQIAHVIYHAPHLGVVNITNHLHQTPLHLAVITGQTKVVSF 546

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ +HLA   G  A   +    R G   +  +L   ++ G   +H
Sbjct: 547  LLQVGADPALLDRHGDSAVHLALRAGASAPDMLCALLRSGVPAMPQLLHVPDFEGLYPVH 606

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 607  LAVRARSPECLDLLVESGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 666

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 667  FAGNTPLHLAAGLGSPTLTRLL 688



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAF---LNFQNNLQQTPLHLA 730
            GA+P    L   GDS +HLA+     A  M       G  A    L+  +     P+HLA
Sbjct: 551  GADP--ALLDRHGDSAVHLALRAGASAPDMLCALLRSGVPAMPQLLHVPDFEGLYPVHLA 608

Query: 731  VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
            V    PE  + L+E+G + E  + +G  T LHLA E   +  +G++T       L + + 
Sbjct: 609  VRARSPECLDLLVESGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 663

Query: 908  ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
            A  + G+T LHLA+  G   +  LL+  GADV+A+
Sbjct: 664  ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADVHAE 698


>ref|NP_001192922.1| B-cell CLL/lymphoma 3 [Bos taurus].
          Length = 454

 Score =  110 bits (274), Expect = 4e-24
 Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            EDGD+ LH+A++         +V   +     L+  NNL+QTPLHLAVIT  P +   L+
Sbjct: 133  EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192

Query: 770  EAGCDPELRDFRGNTPLHLACEQGCLASVGVL--TQPRGTQHLHSILQATNYNGHTCLHL 943
             AG  P   D  G T  HLACE    A +  L  + P GT      L+A NY+G T LH+
Sbjct: 193  MAGASPMALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMD----LEARNYDGLTALHV 248

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 1123
            A        V LL+  GAD++A +  +GR+ L  AV+  +  +V LLL+ GA+VN   Y 
Sbjct: 249  AVNTECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 308

Query: 1124 GYSPYQLTWGR 1156
            G S      GR
Sbjct: 309  GSSALHSASGR 319



 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVIT 739
            GA P    L   G +  HLA  H   A    ++    G    L  +N    T LH+AV T
Sbjct: 195  GASP--MALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMDLEARNYDGLTALHVAVNT 252

Query: 740  NQPEIAEALLEAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
               E    LLE G D +  D + G +PL  A E   L+ V +L Q          + A  
Sbjct: 253  ECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQM 306

Query: 917  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
            Y+G + LH AS  G L +V  LV  GAD +  + C+  T L +A
Sbjct: 307  YSGSSALHSASGRGLLPLVRTLVRSGAD-SGLKNCHNDTPLMVA 349


>ref|XP_002695135.1| PREDICTED: B-cell CLL/lymphoma 3-like [Bos taurus].
          Length = 454

 Score =  110 bits (274), Expect = 4e-24
 Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 2/191 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            EDGD+ LH+A++         +V   +     L+  NNL+QTPLHLAVIT  P +   L+
Sbjct: 133  EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 192

Query: 770  EAGCDPELRDFRGNTPLHLACEQGCLASVGVL--TQPRGTQHLHSILQATNYNGHTCLHL 943
             AG  P   D  G T  HLACE    A +  L  + P GT      L+A NY+G T LH+
Sbjct: 193  MAGASPMALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMD----LEARNYDGLTALHV 248

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 1123
            A        V LL+  GAD++A +  +GR+ L  AV+  +  +V LLL+ GA+VN   Y 
Sbjct: 249  AVNTECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 308

Query: 1124 GYSPYQLTWGR 1156
            G S      GR
Sbjct: 309  GSSALHSASGR 319



 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 54/164 (32%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVIT 739
            GA P    L   G +  HLA  H   A    ++    G    L  +N    T LH+AV T
Sbjct: 195  GASP--MALDRHGQTAAHLACEHRSPACLRALLDSAPGGTMDLEARNYDGLTALHVAVNT 252

Query: 740  NQPEIAEALLEAGCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
               E    LLE G D +  D + G +PL  A E   L+ V +L Q          + A  
Sbjct: 253  ECQEAVLLLLEHGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------VNAQM 306

Query: 917  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
            Y+G + LH AS  G L +V  LV  GAD +  + C+  T L +A
Sbjct: 307  YSGSSALHSASGRGLLPLVRTLVRSGAD-SGLKNCHNDTPLMVA 349


>ref|NP_001192959.1| mindbomb homolog 1 [Bos taurus].
          Length = 1006

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            +DGD  +H A   +E A+ +EV+ +   DL   N +N  +QTPLH+AV     ++ + LL
Sbjct: 495  KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550

Query: 770  EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
            + GC P L+D  G+TPLH A  +        L   G    +T   G   LH         
Sbjct: 551  DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610

Query: 899  -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
                         I+     +G+T LHLA+++ ++ + ELLV  G A+++ Q   N +TA
Sbjct: 611  AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669

Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            LHLAV+ Q+  +V LL++ GA ++     G +P
Sbjct: 670  LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
 Frame = +2

Query: 569  PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            PW   +  +DG + LHLA ++    +   +V Q   +L   + QN  QQT LHLAV    
Sbjct: 622  PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
             +I   L+ AG   +++D  G+TPLH A     L+    L Q +  Q +  +  A   + 
Sbjct: 679  TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735

Query: 926  HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
            +T +      G        I   L + GAD++ +    G++ L L  D   P L   L K
Sbjct: 736  NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791

Query: 1091 C 1093
            C
Sbjct: 792  C 792


>ref|XP_002697767.1| PREDICTED: mindbomb homolog 1 (Drosophila) [Bos taurus].
          Length = 1006

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            +DGD  +H A   +E A+ +EV+ +   DL   N +N  +QTPLH+AV     ++ + LL
Sbjct: 495  KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550

Query: 770  EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
            + GC P L+D  G+TPLH A  +        L   G    +T   G   LH         
Sbjct: 551  DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610

Query: 899  -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
                         I+     +G+T LHLA+++ ++ + ELLV  G A+++ Q   N +TA
Sbjct: 611  AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669

Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            LHLAV+ Q+  +V LL++ GA ++     G +P
Sbjct: 670  LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
 Frame = +2

Query: 569  PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            PW   +  +DG + LHLA ++    +   +V Q   +L   + QN  QQT LHLAV    
Sbjct: 622  PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
             +I   L+ AG   +++D  G+TPLH A     L+    L Q +  Q +  +  A   + 
Sbjct: 679  TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735

Query: 926  HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
            +T +      G        I   L + GAD++ +    G++ L L  D   P L   L K
Sbjct: 736  NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791

Query: 1091 C 1093
            C
Sbjct: 792  C 792


>ref|NP_777151.1| NF-kappa-B inhibitor zeta [Bos taurus].
          Length = 718

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 30/208 (14%)
 Frame = +2

Query: 593  DGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLE 772
            DGD+FLH+A+    +AL+  + R++   L  L+ + +  Q+   +AV  NQ  I + L+ 
Sbjct: 443  DGDTFLHIAVAQGRRALSYVLARKMNA-LHMLDIKEHNGQSAFQVAVAANQHLIVQDLVT 501

Query: 773  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
             G      D  G TPLH+  E+G    +  + +     +    L+ATNY+G T LH A +
Sbjct: 502  LGAQVNTTDCWGRTPLHVCAEKGHSQVLQAIQKGAAGSNQFVDLEATNYDGLTPLHCAVL 561

Query: 953  ---------------------------HGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 1051
                                          +  ++ L+ +GA V A++  +GRTALHLA 
Sbjct: 562  AHNAVVHELQRNQQPHSPEVQELLLKNKSLVDTIKCLIQMGAAVEAKDRKSGRTALHLAA 621

Query: 1052 DLQNPDLVSLLLK---CGADVNRVTYQG 1126
            +  N +L+ L L+   C + VN   Y G
Sbjct: 622  EEANLELIRLFLELPSCLSFVNAKAYNG 649



 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
 Frame = +2

Query: 794  RDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIV 973
            +D  G+T LH+A  QG  A   VL +     H+   L    +NG +   +A       IV
Sbjct: 440  KDADGDTFLHIAVAQGRRALSYVLARKMNALHM---LDIKEHNGQSAFQVAVAANQHLIV 496

Query: 974  ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA------DVNRVTYQGYSP 1135
            + LV+LGA VN  + C GRT LH+  +  +  ++  + K  A      D+    Y G +P
Sbjct: 497  QDLVTLGAQVNTTD-CWGRTPLHVCAEKGHSQVLQAIQKGAAGSNQFVDLEATNYDGLTP 555


>ref|XP_002696444.1| PREDICTED: retinoic acid induced 14-like [Bos taurus].
          Length = 951

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 53/146 (36%), Positives = 81/146 (55%)
 Frame = +2

Query: 695  QNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQP 874
            Q+    + LHLA   +  E  + LL++ C  E  D  G T LH A  QGCL +V VL + 
Sbjct: 82   QDTAGHSALHLAAKNSHHECVKKLLQSKCPAESIDSSGKTALHYAAAQGCLQAVQVLCEH 141

Query: 875  RGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 1054
            R   +L  +      +G+  L LA  +G+  +   L+  GADVN+++  NGRTAL LA +
Sbjct: 142  RSPINLKDL------DGNIPLLLAVQNGHSEVCRFLLDHGADVNSRDK-NGRTALMLACE 194

Query: 1055 LQNPDLVSLLLKCGADVNRVTYQGYS 1132
            + + ++V  L+K GAD+N V   G++
Sbjct: 195  IGSSNIVEALIKKGADLNLVDSLGHN 220


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,550,900
Number of extensions: 1869464
Number of successful extensions: 11344
Number of sequences better than 1.0e-05: 160
Number of HSP's gapped: 10156
Number of HSP's successfully gapped: 348
Length of query: 518
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 411
Effective length of database: 14,140,958
Effective search space: 5811933738
Effective search space used: 5811933738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001050
         (1556 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537413.2| PREDICTED: similar to nuclear factor of kappa l...   576   0.0  
Alignment   gi|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Cani...   130   3e-30
Alignment   gi|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B...   111   2e-24
Alignment   gi|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B...   111   2e-24
Alignment   gi|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B...   111   2e-24
Alignment   gi|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B...   111   2e-24
Alignment   gi|XP_855175.1| PREDICTED: similar to B-cell lymphoma 3-encoded...    94   3e-19
Alignment   gi|XP_547643.2| PREDICTED: similar to mindbomb homolog 1 [Canis...    92   1e-18
Alignment   gi|XP_535726.2| PREDICTED: similar to nuclear factor of kappa l...    85   2e-16
Alignment   gi|XP_539957.2| PREDICTED: similar to ankyrin 1 isoform 3 [Cani...    85   2e-16

>ref|XP_537413.2| PREDICTED: similar to nuclear factor of kappa light polypeptide gene
            enhancer in B-cells inhibitor, alpha [Canis familiaris].
          Length = 515

 Score =  576 bits (1485), Expect(2) = 0.0
 Identities = 288/318 (90%), Positives = 291/318 (91%)
 Frame = +2

Query: 365  PHRAMFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEP 544
            P RAM Q AE  Q+WAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQ+VKELREIRLEP
Sbjct: 198  PSRAMLQQAEHAQDWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQLVKELREIRLEP 257

Query: 545  QEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLH 724
            QEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLH
Sbjct: 258  QEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLH 317

Query: 725  LAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSIL 904
            LAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ   TQHL+SIL
Sbjct: 318  LAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQTCRTQHLYSIL 377

Query: 905  QATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 1084
            QATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN DLVSLL
Sbjct: 378  QATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNSDLVSLL 437

Query: 1085 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXX 1264
            LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP               
Sbjct: 438  LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 497

Query: 1265 XXXLPYDDCVLGGQRLTL 1318
               LPYDDCVLGGQRLTL
Sbjct: 498  EDELPYDDCVLGGQRLTL 515



 Score = 88.2 bits (217), Expect(2) = 0.0
 Identities = 47/78 (60%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
 Frame = +1

Query: 145 EDEASSLFWSDWLGNSPSLTPPRRNPLPAFIGRRGGAADCTTVRGHRPARPSHREQPAR- 321
           +D ASSLFWSDWLGNSP LTPPRRNPLPAFIGRRGGA + T V    PA  + R +  R 
Sbjct: 122 KDGASSLFWSDWLGNSPRLTPPRRNPLPAFIGRRGGAGEPTRVAASGPASVTLRGEARRG 181

Query: 322 --RAACGPRT*GAAPKPS 369
             RAA G    G++ +PS
Sbjct: 182 GERAARGRAHLGSSAEPS 199


>ref|NP_001003344.1| nuclear factor NF-kappa-B p105 subunit [Canis lupus familiaris].
          Length = 972

 Score =  130 bits (328), Expect = 3e-30
 Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 3/196 (1%)
 Frame = +2

Query: 593  DGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEAL 766
            +GDS LHLAIIH    L  +++    G ++   +N +N+L QTPLHLAVIT Q  + + L
Sbjct: 539  NGDSVLHLAIIHLHAQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEAVVDDL 598

Query: 767  LEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLA 946
            L AG D  L D  GN+ LHLA ++G    + +L + +    L   +   N  G   +H+A
Sbjct: 599  LRAGADLSLLDRLGNSVLHLAAKEGQDKILSILLKHKKAALL---MDHPNGEGLNAIHIA 655

Query: 947  SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQ 1123
             +   +  + LLV+ GADVNAQE  +GRTALHLAV+  N  L   LLL+  A V+  TY 
Sbjct: 656  VMSNSMPCLLLLVAAGADVNAQERKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTYD 715

Query: 1124 GYSPYQLTWGRPSTRI 1171
            G +P  +  GR STR+
Sbjct: 716  GTTPLHIAAGRGSTRL 731



 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
 Frame = +2

Query: 596  GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
            G+S LHLA    +  +   +++  K  L  ++  N      +H+AV++N       L+ A
Sbjct: 612  GNSVLHLAAKEGQDKILSILLKHKKAAL-LMDHPNGEGLNAIHIAVMSNSMPCLLLLVAA 670

Query: 776  GCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
            G D   ++ + G T LHLA E   ++  G L    G  H+ S    T Y+G T LH+A+ 
Sbjct: 671  GADVNAQERKSGRTALHLAVEHDNISLAGCLLL-EGDAHVDS----TTYDGTTPLHIAAG 725

Query: 953  HGYLGIVELLVSLGAD 1000
             G   +  LL + GAD
Sbjct: 726  RGSTRLAALLKAAGAD 741


>ref|XP_543988.2| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
            (DNA-binding factor KBF2) (H2TF1) (Lymphocyte
            translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
            isoform 1 [Canis familiaris].
          Length = 899

 Score =  111 bits (278), Expect = 2e-24
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ +HLA   G  A   +    R G   +  +L   ++ G   +H
Sbjct: 546  LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 605

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 606  LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 665

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 666  FAGNTPLHLAAGLGSPTLTRLL 687



 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
            GA+P    L   GDS +HLA+     A  L   ++R     +  L    + +   P+HLA
Sbjct: 550  GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 607

Query: 731  VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
            V    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + + 
Sbjct: 608  VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 662

Query: 908  ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
            A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 663  ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697


>ref|XP_862903.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
            (DNA-binding factor KBF2) (H2TF1) (Lymphocyte
            translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
            isoform 5 [Canis familiaris].
          Length = 889

 Score =  111 bits (278), Expect = 2e-24
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 476  ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 535

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ +HLA   G  A   +    R G   +  +L   ++ G   +H
Sbjct: 536  LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 595

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 596  LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 655

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 656  FAGNTPLHLAAGLGSPTLTRLL 677



 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
            GA+P    L   GDS +HLA+     A  L   ++R     +  L    + +   P+HLA
Sbjct: 540  GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 597

Query: 731  VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
            V    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + + 
Sbjct: 598  VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 652

Query: 908  ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
            A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 653  ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 687


>ref|XP_862878.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
            (DNA-binding factor KBF2) (H2TF1) (Lymphocyte
            translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
            isoform 4 [Canis familiaris].
          Length = 904

 Score =  111 bits (278), Expect = 2e-24
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 491  ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 550

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ +HLA   G  A   +    R G   +  +L   ++ G   +H
Sbjct: 551  LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 610

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 611  LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 670

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 671  FAGNTPLHLAAGLGSPTLTRLL 692



 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
            GA+P    L   GDS +HLA+     A  L   ++R     +  L    + +   P+HLA
Sbjct: 555  GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 612

Query: 731  VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
            V    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + + 
Sbjct: 613  VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 667

Query: 908  ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
            A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 668  ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 702


>ref|XP_850995.1| PREDICTED: similar to Nuclear factor NF-kappa-B p100/p49 subunits
            (DNA-binding factor KBF2) (H2TF1) (Lymphocyte
            translocation chromosome 10) (Oncogene Lyt-10) (Lyt10)
            isoform 3 [Canis familiaris].
          Length = 899

 Score =  111 bits (278), Expect = 2e-24
 Identities = 75/202 (37%), Positives = 109/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTSVIEQIAHVIYHARHLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR-GTQHLHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ +HLA   G  A   +    R G   +  +L   ++ G   +H
Sbjct: 546  LLQVGADPALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVH 605

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 606  LAVRARSPECLDLLVDSGAEVEAAERQGGRTALHLATEMEELGLVTHLVTKLRANVNART 665

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 666  FAGNTPLHLAAGLGSPTLTRLL 687



 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKA--LTMEVVRQVKGDLAFLNFQNNLQQT-PLHLA 730
            GA+P    L   GDS +HLA+     A  L   ++R     +  L    + +   P+HLA
Sbjct: 550  GADP--ALLDRHGDSAVHLALRAGTSAPDLLRALLRSGVPTMPQLLHMPDFEGLYPVHLA 607

Query: 731  VITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSILQ 907
            V    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + + 
Sbjct: 608  VRARSPECLDLLVDSGAEVEAAERQGGRTALHLATE---MEELGLVTHL--VTKLRANVN 662

Query: 908  ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
            A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 663  ARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697


>ref|XP_855175.1| PREDICTED: similar to B-cell lymphoma 3-encoded protein (Bcl-3
            protein) [Canis familiaris].
          Length = 509

 Score = 94.4 bits (233), Expect = 3e-19
 Identities = 66/172 (38%), Positives = 91/172 (52%), Gaps = 3/172 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            EDGD+ LH+A++         +V   +     L+  NNL+QTPLHLAVIT  P +   L+
Sbjct: 196  EDGDTPLHIAVVQGNLPAVHRLVNLFQHGGRELDIYNNLRQTPLHLAVITTLPSMVRLLV 255

Query: 770  EAGCDPELRDFRGNTPLHLACEQ---GCLASVGVLTQPRGTQHLHSILQATNYNGHTCLH 940
             AG  P   D  G T  HLACE     CL ++     P GT      L+A NY+G T LH
Sbjct: 256  MAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP-GTVD----LEARNYDGLTALH 310

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
            +A        V LL+  GAD++A +  +GR+ L  AV+  +  +V LLL+ G
Sbjct: 311  VAVNMQCPEAVLLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQVG 362


>ref|XP_547643.2| PREDICTED: similar to mindbomb homolog 1 [Canis familiaris].
          Length = 1006

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            +DGD  +H A   +E A+ +EV+ +   DL   N +N  +QTPLH+AV     ++ + LL
Sbjct: 495  KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550

Query: 770  EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
            + GC P L+D  G+TPLH A  +        L   G    +T   G   LH         
Sbjct: 551  DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610

Query: 899  -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
                         I+     +G+T LHLA+++ ++ + ELLV  G A+++ Q   N +TA
Sbjct: 611  AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669

Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            LHLAV+ Q+  +V LL++ GA ++     G +P
Sbjct: 670  LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
 Frame = +2

Query: 569  PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            PW   +  +DG + LHLA ++    +   +V Q   +L   + QN  QQT LHLAV    
Sbjct: 622  PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
             +I   L+ AG   +++D  G+TPLH A     L+    L Q +  Q +  +  A   + 
Sbjct: 679  TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735

Query: 926  HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
            +T +      G        I   L + GAD++ +    G++ L L  D   P L   L K
Sbjct: 736  NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791

Query: 1091 C 1093
            C
Sbjct: 792  C 792


>ref|XP_535726.2| PREDICTED: similar to nuclear factor of kappa light polypeptide gene
            enhancer in B-cells inhibitor, zeta isoform a [Canis
            familiaris].
          Length = 775

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
 Frame = +2

Query: 506  QMVKELREIRLEPQEAPRGAEPWKQQLTED--GDSFLHLAIIHEEKALTMEVVRQVKGDL 679
            Q+ K   + ++E +E+        Q L++D  GD+FLH+A+    +AL+  + R++   L
Sbjct: 469  QLGKSFFQWQVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNA-L 527

Query: 680  AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
              L+ + +  Q+   +AV  NQ  I + L+  G      D  G TPLH+  E+G    + 
Sbjct: 528  HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 587

Query: 860  VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
             + +     +    L+ATNY+G T LH A +                             
Sbjct: 588  AIQKGAVKSNQFLDLEATNYDGLTPLHCAVVAHNAVVHELQRNQQPHSPEVQELLLKNKS 647

Query: 959  YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQG 1126
             +  ++ L+ +GA V A++  +GRTALHLA +  N +L+ L L+   C + VN   Y G
Sbjct: 648  MVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNG 706


>ref|XP_539957.2| PREDICTED: similar to ankyrin 1 isoform 3 [Canis familiaris].
          Length = 1881

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 54/141 (38%), Positives = 75/141 (53%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A   NQ E+A +LL+ G        +G TPLHLA ++G    V +L   +   +L
Sbjct: 630  TPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 689

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                   N +G T LHL +  G++ + ++L+  G  V+A     G T LH+A    N  L
Sbjct: 690  ------GNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRM-GYTPLHVASHYGNIKL 742

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
            V  LL+  ADVN  T QGYSP
Sbjct: 743  VKFLLQHQADVNAKTKQGYSP 763



 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 58/194 (29%), Positives = 91/194 (46%)
 Frame = +2

Query: 608  LHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDP 787
            LH+A     +A   EV + +  + A +N +    QTPLH A       + + LLE   +P
Sbjct: 467  LHMAA----RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 522

Query: 788  ELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLG 967
             L    G+TPLH+A  +G + +   L +   +Q            G T LH+A+ +G + 
Sbjct: 523  NLATTAGHTPLHIAAREGQVETALALLEKEASQ------ACMTKKGFTPLHVAAKYGKVR 576

Query: 968  IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 1147
            + ELL+   A  NA    NG T LH+AV   + D+V LLL  G   +   + GY+P  + 
Sbjct: 577  VAELLLGRDAHPNAAGK-NGLTPLHVAVHHNHLDIVRLLLPRGGSPHSPAWNGYTPLHIA 635

Query: 1148 WGRPSTRIQQQLGQ 1189
              +    + + L Q
Sbjct: 636  AKQNQMEVARSLLQ 649



 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
 Frame = +2

Query: 470  SGLDSMKDEEYEQMVKEL--REIRLEPQEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKAL 643
            +GL     E + +MV EL  +EI LE               T+ G++ LH+A +  +   
Sbjct: 73   NGLHLASKEGHVKMVVELLHKEIILETT-------------TKKGNTALHIAALAGQD-- 117

Query: 644  TMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLH 823
              EVVR++    A +N Q+    TPL++A   N  E+ + LLE G +  +    G TPL 
Sbjct: 118  --EVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLA 175

Query: 824  LACEQG-----------------CLASVGVLTQPRGTQHLHSILQ------ATNYNGHTC 934
            +A +QG                  L ++ +  +   T+    +LQ        +  G T 
Sbjct: 176  VALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTP 235

Query: 935  LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 1114
            LH+A+ +  L + +LL++ GA VN   P NG T LH+A    N  +V LLL  GA +   
Sbjct: 236  LHIAAHYENLNVAQLLLNRGASVNF-TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETR 294

Query: 1115 TYQGYSPYQLTWGRPSTRIQQQL 1183
            T    +P          RI + L
Sbjct: 295  TKDELTPLHCAARNGHVRISEIL 317



 Score = 67.0 bits (162), Expect = 5e-11
 Identities = 47/144 (32%), Positives = 67/144 (46%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A    +  +AE LL     P      G TPLH+A     L  V +L    G+ H 
Sbjct: 564  TPLHVAAKYGKVRVAELLLGRDAHPNAAGKNGLTPLHVAVHHNHLDIVRLLLPRGGSPH- 622

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                 +  +NG+T LH+A+    + +   L+  G   NA E   G T LHLA    + ++
Sbjct: 623  -----SPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEM 676

Query: 1073 VSLLLKCGADVNRVTYQGYSPYQL 1144
            V+LLL   A+ N     G +P  L
Sbjct: 677  VALLLSKQANGNLGNKSGLTPLHL 700



 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 44/141 (31%), Positives = 68/141 (48%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A       +A+ LL+ G  P  R   G TPLH+AC++  +  + +L +   +   
Sbjct: 366  TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGAS--- 422

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
               + A   +G T LH+AS  G+L IV+ L+  GA  N        T LH+A    + ++
Sbjct: 423  ---IDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEV 478

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
               LL+  A VN       +P
Sbjct: 479  AKYLLQNKAKVNAKAKDDQTP 499



 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 44/141 (31%), Positives = 72/141 (51%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A       +A+ LL  G         G TPLH+A  +G +  V +L   RG Q  
Sbjct: 234  TPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLD-RGAQ-- 290

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
               ++    +  T LH A+ +G++ I E+L+  GA + A+   NG + +H+A    + D 
Sbjct: 291  ---IETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTK-NGLSPIHMAAQGDHLDC 346

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
            V LLL+  A+++ +T    +P
Sbjct: 347  VRLLLQYNAEIDDITLDHLTP 367



 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 27/217 (12%)
 Frame = +2

Query: 566  EPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            +P    L++ G + LH+A  +E     + V + +    A +NF      TPLH+A     
Sbjct: 222  DPNPDVLSKTGFTPLHIAAHYEN----LNVAQLLLNRGASVNFTPQNGITPLHIASRRGN 277

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQG------CLASVGVLTQPRGT-------- 883
              +   LL+ G   E R     TPLH A   G       L   G   Q +          
Sbjct: 278  VIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHM 337

Query: 884  ----QHLHSILQATNYNGH---------TCLHLASIHGYLGIVELLVSLGADVNAQEPCN 1024
                 HL  +     YN           T LH+A+  G+  + ++L+  GA  N++   N
Sbjct: 338  AAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSR-ALN 396

Query: 1025 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            G T LH+A    +  ++ LLLK GA ++ VT  G +P
Sbjct: 397  GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTP 433



 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 38/120 (31%), Positives = 54/120 (45%)
 Frame = +2

Query: 689  NFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 868
            N  N    TPLHL        +A+ L++ G   +     G TPLH+A   G +  V  L 
Sbjct: 688  NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 747

Query: 869  QPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
            Q +        + A    G++ LH A+  G+  IV LL+  GA  N +   NG T L +A
Sbjct: 748  QHQAD------VNAKTKQGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSNGTTPLAIA 800


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,063,886
Number of extensions: 1906050
Number of successful extensions: 13258
Number of sequences better than 1.0e-05: 204
Number of HSP's gapped: 11243
Number of HSP's successfully gapped: 738
Length of query: 518
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 411
Effective length of database: 15,307,552
Effective search space: 6291403872
Effective search space used: 6291403872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001050
         (1556 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_065390.1| NF-kappa-B inhibitor alpha [Homo sapiens].           560   e-159
Alignment   gi|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isofo...   139   9e-33
Alignment   gi|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform ...   139   9e-33
Alignment   gi|NP_004547.2| NF-kappa-B inhibitor epsilon [Homo sapiens].         134   2e-31
Alignment   gi|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isofo...   113   4e-25
Alignment   gi|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isofo...   113   4e-25
Alignment   gi|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform ...   113   4e-25
Alignment   gi|NP_005169.2| B-cell lymphoma 3 protein [Homo sapiens].            110   3e-24
Alignment   gi|NP_065825.1| E3 ubiquitin-protein ligase MIB1 [Homo sapiens].      92   1e-18
Alignment   gi|NP_001005474.1| NF-kappa-B inhibitor zeta isoform b [Homo sa...    87   3e-17

>ref|NP_065390.1| NF-kappa-B inhibitor alpha [Homo sapiens].
          Length = 317

 Score =  560 bits (1443), Expect = e-159
 Identities = 281/317 (88%), Positives = 285/317 (89%), Gaps = 3/317 (0%)
 Frame = +2

Query: 377  MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
            MFQ AE  QEWAMEGPRD LKKERLLDDRHDSGLDSMKDEEYEQMVKEL+EIRLEPQE P
Sbjct: 1    MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP 60

Query: 557  RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
            RG+EPWKQQLTEDGDSFLHLAIIHEEKALTMEV+RQVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61   RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 120

Query: 737  TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
            TNQPEIAEALL AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ   T HLHSIL+ATN
Sbjct: 121  TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 180

Query: 917  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
            YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240

Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP---XXXXXXXXXXXXXXXX 1267
            ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP                   
Sbjct: 241  ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 300

Query: 1268 XXLPYDDCVLGGQRLTL 1318
              LPYDDCV GGQRLTL
Sbjct: 301  DELPYDDCVFGGQRLTL 317


>ref|NP_001158884.1| nuclear factor NF-kappa-B p105 subunit isoform 2 [Homo sapiens].
          Length = 968

 Score =  139 bits (349), Expect = 9e-33
 Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 3/197 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GDS LHLAIIH    L  +++    G ++   +N +N+L QTPLHLAVIT Q ++ E 
Sbjct: 541  ENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 600

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
            LL AG D  L D  GN+ LHLA ++G    + +L + +    L   L   N +G   +HL
Sbjct: 601  LLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLKHKKAALL---LDHPNGDGLNAIHL 657

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
            A +   L  + LLV+ GADVNAQE  +GRTALHLAV+  N  L   LLL+  A V+  TY
Sbjct: 658  AMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTY 717

Query: 1121 QGYSPYQLTWGRPSTRI 1171
             G +P  +  GR STR+
Sbjct: 718  DGTTPLHIAAGRGSTRL 734


>ref|NP_003989.2| nuclear factor NF-kappa-B p105 subunit isoform 1 [Homo sapiens].
          Length = 969

 Score =  139 bits (349), Expect = 9e-33
 Identities = 87/197 (44%), Positives = 117/197 (59%), Gaps = 3/197 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GDS LHLAIIH    L  +++    G ++   +N +N+L QTPLHLAVIT Q ++ E 
Sbjct: 542  ENGDSVLHLAIIHLHSQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 601

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
            LL AG D  L D  GN+ LHLA ++G    + +L + +    L   L   N +G   +HL
Sbjct: 602  LLRAGADLSLLDRLGNSVLHLAAKEGHDKVLSILLKHKKAALL---LDHPNGDGLNAIHL 658

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
            A +   L  + LLV+ GADVNAQE  +GRTALHLAV+  N  L   LLL+  A V+  TY
Sbjct: 659  AMMSNSLPCLLLLVAAGADVNAQEQKSGRTALHLAVEHDNISLAGCLLLEGDAHVDSTTY 718

Query: 1121 QGYSPYQLTWGRPSTRI 1171
             G +P  +  GR STR+
Sbjct: 719  DGTTPLHIAAGRGSTRL 735


>ref|NP_004547.2| NF-kappa-B inhibitor epsilon [Homo sapiens].
          Length = 500

 Score =  134 bits (338), Expect = 2e-31
 Identities = 83/212 (39%), Positives = 122/212 (57%), Gaps = 4/212 (1%)
 Frame = +2

Query: 584  LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            ++EDGD+ +HLA+IHE  A+ +  +  +  ++  L+ QNNL QT LHLAV  +QP    A
Sbjct: 255  ISEDGDTLVHLAVIHEAPAVLLCCLALLPQEV--LDIQNNLYQTALHLAVHLDQPGAVRA 312

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR---GTQHLHSI-LQATNYNGHT 931
            L+  G    L+D  G+T LH+AC++  LA    L + R   G    HS+ LQ  N+ G  
Sbjct: 313  LVLKGASRALQDRHGDTALHVACQRQHLACARCLLEGRPEPGRGTSHSLDLQLQNWQGLA 372

Query: 932  CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 1111
            CLH+A++     ++ELL+  GAD++ QE  +G+TALHLAV+ Q   LV  LL+ GA V+ 
Sbjct: 373  CLHIATLQKNQPLMELLLRNGADIDVQEGTSGKTALHLAVETQERGLVQFLLQAGAQVDA 432

Query: 1112 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 1207
                G +P  L  GR    I   L +   ++L
Sbjct: 433  RMLNGCTPLHLAAGRGLMGISSTLCKAGADSL 464


>ref|NP_001070962.1| nuclear factor NF-kappa-B p100 subunit isoform a [Homo sapiens].
          Length = 900

 Score =  113 bits (283), Expect = 4e-25
 Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++V  +    DL  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLAS--VGVLTQPRGTQHLHSILQATNYNGHTCL 937
            LL  G DP L D  G++ +HLA   G  A   +  L Q  G   +  +L   ++ G   +
Sbjct: 546  LLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQ-SGAPAVPQLLHMPDFEGLYPV 604

Query: 938  HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV 1114
            HLA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  
Sbjct: 605  HLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNAR 664

Query: 1115 TYQGYSPYQLTWG 1153
            T+ G +P  L  G
Sbjct: 665  TFAGNTPLHLAAG 677



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLA-----FLNFQNNLQQTPLH 724
            GA+P    L   GDS +HLA+     A   E++R +    A      L+  +     P+H
Sbjct: 550  GADP--ALLDRHGDSAMHLAL--RAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVH 605

Query: 725  LAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSI 901
            LAV    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + 
Sbjct: 606  LAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATE---MEELGLVTHL--VTKLRAN 660

Query: 902  LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 1066
            + A  + G+T LHLA+  GY  +  LL+  GAD++A+      P           D + P
Sbjct: 661  VNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSEGP 720

Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 1201
            +             R +++G++P  LT       +     Q T+E
Sbjct: 721  E----------KDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTME 755


>ref|NP_001070961.1| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
          Length = 899

 Score =  113 bits (283), Expect = 4e-25
 Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++V  +    DL  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLAS--VGVLTQPRGTQHLHSILQATNYNGHTCL 937
            LL  G DP L D  G++ +HLA   G  A   +  L Q  G   +  +L   ++ G   +
Sbjct: 546  LLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQ-SGAPAVPQLLHMPDFEGLYPV 604

Query: 938  HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV 1114
            HLA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  
Sbjct: 605  HLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNAR 664

Query: 1115 TYQGYSPYQLTWG 1153
            T+ G +P  L  G
Sbjct: 665  TFAGNTPLHLAAG 677



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLA-----FLNFQNNLQQTPLH 724
            GA+P    L   GDS +HLA+     A   E++R +    A      L+  +     P+H
Sbjct: 550  GADP--ALLDRHGDSAMHLAL--RAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVH 605

Query: 725  LAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSI 901
            LAV    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + 
Sbjct: 606  LAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATE---MEELGLVTHL--VTKLRAN 660

Query: 902  LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 1066
            + A  + G+T LHLA+  GY  +  LL+  GAD++A+      P           D + P
Sbjct: 661  VNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSEGP 720

Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 1201
            +             R +++G++P  LT       +     Q T+E
Sbjct: 721  E----------KDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTME 755


>ref|NP_002493.3| nuclear factor NF-kappa-B p100 subunit isoform b [Homo sapiens].
          Length = 899

 Score =  113 bits (283), Expect = 4e-25
 Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH + ++  ++V  +    DL  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTSVIEQIVYVIHHAQDLGVVNLTNHLHQTPLHLAVITGQTSVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLAS--VGVLTQPRGTQHLHSILQATNYNGHTCL 937
            LL  G DP L D  G++ +HLA   G  A   +  L Q  G   +  +L   ++ G   +
Sbjct: 546  LLRVGADPALLDRHGDSAMHLALRAGAGAPELLRALLQ-SGAPAVPQLLHMPDFEGLYPV 604

Query: 938  HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRV 1114
            HLA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  
Sbjct: 605  HLAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATEMEELGLVTHLVTKLRANVNAR 664

Query: 1115 TYQGYSPYQLTWG 1153
            T+ G +P  L  G
Sbjct: 665  TFAGNTPLHLAAG 677



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 11/225 (4%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLA-----FLNFQNNLQQTPLH 724
            GA+P    L   GDS +HLA+     A   E++R +    A      L+  +     P+H
Sbjct: 550  GADP--ALLDRHGDSAMHLAL--RAGAGAPELLRALLQSGAPAVPQLLHMPDFEGLYPVH 605

Query: 725  LAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHSI 901
            LAV    PE  + L+++G + E  + +G  T LHLA E   +  +G++T       L + 
Sbjct: 606  LAVRARSPECLDLLVDSGAEVEATERQGGRTALHLATE---MEELGLVTHL--VTKLRAN 660

Query: 902  LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNP 1066
            + A  + G+T LHLA+  GY  +  LL+  GAD++A+      P           D + P
Sbjct: 661  VNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADIHAENEEPLCPLPSPPTSDSDSDSEGP 720

Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 1201
            +             R +++G++P  LT       +     Q T+E
Sbjct: 721  E----------KDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNTME 755


>ref|NP_005169.2| B-cell lymphoma 3 protein [Homo sapiens].
          Length = 454

 Score =  110 bits (276), Expect = 3e-24
 Identities = 75/206 (36%), Positives = 103/206 (50%), Gaps = 1/206 (0%)
 Frame = +2

Query: 542  PQEAPRGAE-PWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTP 718
            P E P  A+     +  EDGD+ LH+A++         +V   +     L+  NNL+QTP
Sbjct: 116  PMEHPLSADIAMATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP 175

Query: 719  LHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHS 898
            LHLAVIT  P +   L+ AG  P   D  G T  HLACE      +  L        L  
Sbjct: 176  LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD- 234

Query: 899  ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 1078
             L+A NY+G T LH+A        V+LL+  GAD++A +  +GR+ L  AV+  +  +V 
Sbjct: 235  -LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ 293

Query: 1079 LLLKCGADVNRVTYQGYSPYQLTWGR 1156
            LLL+ GA+VN   Y G S      GR
Sbjct: 294  LLLQHGANVNAQMYSGSSALHSASGR 319


>ref|NP_065825.1| E3 ubiquitin-protein ligase MIB1 [Homo sapiens].
          Length = 1006

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            +DGD  +H A   +E A+ +EV+ +   DL   N +N  +QTPLH+AV     ++ + LL
Sbjct: 495  KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550

Query: 770  EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
            + GC P L+D  G+TPLH A  +        L   G    +T   G   LH         
Sbjct: 551  DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610

Query: 899  -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
                         I+     +G+T LHLA+++ ++ + ELLV  G A+++ Q   N +TA
Sbjct: 611  AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669

Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            LHLAV+ Q+  +V LL++ GA ++     G +P
Sbjct: 670  LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 6/181 (3%)
 Frame = +2

Query: 569  PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            PW   +  +DG + LHLA ++    +   +V Q   +L   + QN  QQT LHLAV    
Sbjct: 622  PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
             +I   L+ AG   +++D  G+TPLH A     L+    L Q +  Q +  +  A   + 
Sbjct: 679  TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735

Query: 926  HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
            +T +      G        I   L + GAD++ +    G++ L L  D   P+L   L K
Sbjct: 736  NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PNLCKALAK 791

Query: 1091 C 1093
            C
Sbjct: 792  C 792


>ref|NP_001005474.1| NF-kappa-B inhibitor zeta isoform b [Homo sapiens].
          Length = 618

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 32/268 (11%)
 Frame = +2

Query: 506  QMVKELREIRLEPQEAPRGAEPWKQQLTED--GDSFLHLAIIHEEKALTMEVVRQVKGDL 679
            Q+ K L + ++E +E+        Q L++D  GD+FLH+A+    +AL+  + R++   L
Sbjct: 312  QLGKSLFQWQVEQEESKLANISQDQFLSKDADGDTFLHIAVAQGRRALSYVLARKMNA-L 370

Query: 680  AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
              L+ + +  Q+   +AV  NQ  I + L+  G      D  G TPLH+  E+G    + 
Sbjct: 371  HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNIGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 430

Query: 860  VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
             + +     +    L+ATNY+G T LH A I                             
Sbjct: 431  AIQKGAVGSNQFVDLEATNYDGLTPLHCAVIAHNAVVHELQRNQQPHSPEVQELLLKNKS 490

Query: 959  YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQGY 1129
             +  ++ L+ +GA V A++  +GRTALHLA +  N +L+ L L+   C + VN   Y G 
Sbjct: 491  LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNGN 550

Query: 1130 SPYQLTWGRPSTRIQQQLGQLTLENLQM 1213
            +   +     +  +Q +L QL    L M
Sbjct: 551  TALHV-----AASLQYRLTQLDAVRLLM 573


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,711,182
Number of extensions: 1850512
Number of successful extensions: 11324
Number of sequences better than 1.0e-05: 205
Number of HSP's gapped: 9798
Number of HSP's successfully gapped: 498
Length of query: 518
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 411
Effective length of database: 14,770,016
Effective search space: 6070476576
Effective search space used: 6070476576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001050
         (1556 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035037.2| NF-kappa-B inhibitor alpha [Mus musculus].           551   e-157
Alignment   gi|NP_032716.2| NF-kappa-B inhibitor epsilon [Mus musculus].         137   3e-32
Alignment   gi|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus mus...   135   9e-32
Alignment   gi|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isofo...   114   2e-25
Alignment   gi|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isofo...   114   2e-25
Alignment   gi|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform ...   114   2e-25
Alignment   gi|NP_291079.2| B-cell lymphoma 3 protein homolog [Mus musculus].    113   5e-25
Alignment   gi|NP_659109.2| E3 ubiquitin-protein ligase MIB1 [Mus musculus].      92   1e-18
Alignment   gi|NP_001152867.1| NF-kappa-B inhibitor zeta isoform b [Mus mus...    87   4e-17
Alignment   gi|NP_001152866.1| NF-kappa-B inhibitor zeta isoform a [Mus mus...    87   4e-17

>ref|NP_035037.2| NF-kappa-B inhibitor alpha [Mus musculus].
          Length = 314

 Score =  551 bits (1420), Expect = e-157
 Identities = 273/314 (86%), Positives = 280/314 (89%)
 Frame = +2

Query: 377  MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
            MFQPA  GQ+WAMEGPRD LKKERL+DDRHDSGLDSMKDEEYEQMVKELREIRL+PQEAP
Sbjct: 1    MFQPAGHGQDWAMEGPRDGLKKERLVDDRHDSGLDSMKDEEYEQMVKELREIRLQPQEAP 60

Query: 557  RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
              AEPWKQQLTEDGDSFLHLAIIHEEK LTMEV+ QVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61   LAAEPWKQQLTEDGDSFLHLAIIHEEKPLTMEVIGQVKGDLAFLNFQNNLQQTPLHLAVI 120

Query: 737  TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
            TNQP IAEALL+AGCDPELRDFRGNTPLHLACEQGCLASV VLTQ    QHLHS+LQATN
Sbjct: 121  TNQPGIAEALLKAGCDPELRDFRGNTPLHLACEQGCLASVAVLTQTCTPQHLHSVLQATN 180

Query: 917  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
            YNGHTCLHLASIHGYL IVE LV+LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181  YNGHTCLHLASIHGYLAIVEHLVTLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240

Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXL 1276
            ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP                  L
Sbjct: 241  ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEDEL 300

Query: 1277 PYDDCVLGGQRLTL 1318
            PYDDCV GGQRLTL
Sbjct: 301  PYDDCVFGGQRLTL 314


>ref|NP_032716.2| NF-kappa-B inhibitor epsilon [Mus musculus].
          Length = 364

 Score =  137 bits (344), Expect = 3e-32
 Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 4/247 (1%)
 Frame = +2

Query: 584  LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            ++EDGD+ LHLA+IHE  ++    +  +  ++  L+ QNNL QT LHLAV  +QP++  A
Sbjct: 119  ISEDGDTLLHLAVIHEAPSVLFCCLAFLPQEV--LDIQNNLYQTALHLAVHLDQPDVVRA 176

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPR---GTQHLHSI-LQATNYNGHT 931
            L+  G    L+D  G+T LH+AC +  LA    L + +   G Q  H + LQ  N+ G  
Sbjct: 177  LVLKGASRILQDQHGDTALHVACRRQNLACACCLLEEQPEPGRQLSHPLDLQLKNWQGLA 236

Query: 932  CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 1111
            CLH+A++     ++ELL+  GAD++ QE  +G+TALHLAV+ Q   LV  LL+ GA V+ 
Sbjct: 237  CLHIATLQRNQPLIELLLQNGADIDVQEGTSGKTALHLAVETQERSLVQFLLQAGARVDA 296

Query: 1112 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXLPYDDC 1291
                G +P  L  GR    I   L +   ++L +                    LP+DD 
Sbjct: 297  RMLNGCTPLHLAAGRGLNSISSTLCEAGADSLLL---NVEDETPQDLAEDLLSYLPFDDL 353

Query: 1292 VLGGQRL 1312
             + G+ L
Sbjct: 354  KISGKPL 360


>ref|NP_032715.2| nuclear factor NF-kappa-B p105 subunit [Mus musculus].
          Length = 971

 Score =  135 bits (340), Expect = 9e-32
 Identities = 84/197 (42%), Positives = 115/197 (58%), Gaps = 3/197 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GDS LHLAIIH    L  +++    G ++   +N +N+L QTPLHLAVIT Q ++ E 
Sbjct: 537  ENGDSVLHLAIIHLHAQLVRDLLEVTSGLISDDIINMRNDLYQTPLHLAVITKQEDVVED 596

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
            LL  G D  L D  GN+ LHLA ++G    + +L + R    L   +   N  G   +H+
Sbjct: 597  LLRVGADLSLLDRWGNSVLHLAAKEGHDRILSILLKSRKAAPL---IDHPNGEGLNAIHI 653

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
            A +   L  + LLV+ GA+VNAQE  +GRTALHLAV+  N  L   LLL+  A V+  TY
Sbjct: 654  AVMSNSLPCLLLLVAAGAEVNAQEQKSGRTALHLAVEYDNISLAGCLLLEGDAHVDSTTY 713

Query: 1121 QGYSPYQLTWGRPSTRI 1171
             G +P  +  GR STR+
Sbjct: 714  DGTTPLHIAAGRGSTRL 730


>ref|NP_001170841.1| nuclear factor NF-kappa-B p100 subunit isoform b [Mus musculus].
          Length = 900

 Score =  114 bits (286), Expect = 2e-25
 Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH +  +  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQH-LHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ LHLA   G  A   +    R   H +  IL   ++ G   +H
Sbjct: 546  LLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLYPVH 605

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 606  LAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNART 665

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 666  FAGNTPLHLAAGLGSPTLTRLL 687



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEE------KALTMEVVRQVKGDLAFLNFQNNLQQTPL 721
            GA+P    L   GDS LHLA+          +AL       V   L   +F+      P+
Sbjct: 550  GADP--TLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLY---PV 604

Query: 722  HLAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHS 898
            HLAV    PE  + L++ G + E  + +G  T LHLA E   +  +G++T       LH+
Sbjct: 605  HLAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATE---MEELGLVTHL--VTKLHA 659

Query: 899  ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
             + A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 660  NVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697


>ref|NP_001170840.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
          Length = 899

 Score =  114 bits (286), Expect = 2e-25
 Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH +  +  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQH-LHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ LHLA   G  A   +    R   H +  IL   ++ G   +H
Sbjct: 546  LLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLYPVH 605

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 606  LAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNART 665

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 666  FAGNTPLHLAAGLGSPTLTRLL 687



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEE------KALTMEVVRQVKGDLAFLNFQNNLQQTPL 721
            GA+P    L   GDS LHLA+          +AL       V   L   +F+      P+
Sbjct: 550  GADP--TLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLY---PV 604

Query: 722  HLAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHS 898
            HLAV    PE  + L++ G + E  + +G  T LHLA E   +  +G++T       LH+
Sbjct: 605  HLAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATE---MEELGLVTHL--VTKLHA 659

Query: 899  ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
             + A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 660  NVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697


>ref|NP_062281.1| nuclear factor NF-kappa-B p100 subunit isoform a [Mus musculus].
          Length = 899

 Score =  114 bits (286), Expect = 2e-25
 Identities = 77/202 (38%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GD+ LHLAIIH +  +  ++   +     L  +N  N+L QTPLHLAVIT Q  +   
Sbjct: 486  ENGDTPLHLAIIHGQTGVIEQIAHVIYHAQYLGVINLTNHLHQTPLHLAVITGQTRVVSF 545

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQH-LHSILQATNYNGHTCLH 940
            LL+ G DP L D  G++ LHLA   G  A   +    R   H +  IL   ++ G   +H
Sbjct: 546  LLQVGADPTLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLYPVH 605

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVT 1117
            LA        ++LLV  GA+V A E   GRTALHLA +++   LV+ L+ K  A+VN  T
Sbjct: 606  LAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATEMEELGLVTHLVTKLHANVNART 665

Query: 1118 YQGYSPYQLTWGRPSTRIQQQL 1183
            + G +P  L  G  S  + + L
Sbjct: 666  FAGNTPLHLAAGLGSPTLTRLL 687



 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 7/158 (4%)
 Frame = +2

Query: 560  GAEPWKQQLTEDGDSFLHLAIIHEE------KALTMEVVRQVKGDLAFLNFQNNLQQTPL 721
            GA+P    L   GDS LHLA+          +AL       V   L   +F+      P+
Sbjct: 550  GADP--TLLDRHGDSALHLALRAGAAAPELLQALLRSGAHAVPQILHMPDFEGLY---PV 604

Query: 722  HLAVITNQPEIAEALLEAGCDPELRDFRGN-TPLHLACEQGCLASVGVLTQPRGTQHLHS 898
            HLAV    PE  + L++ G + E  + +G  T LHLA E   +  +G++T       LH+
Sbjct: 605  HLAVHARSPECLDLLVDCGAEVEAPERQGGRTALHLATE---MEELGLVTHL--VTKLHA 659

Query: 899  ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 1012
             + A  + G+T LHLA+  G   +  LL+  GAD++A+
Sbjct: 660  NVNARTFAGNTPLHLAAGLGSPTLTRLLLKAGADIHAE 697


>ref|NP_291079.2| B-cell lymphoma 3 protein homolog [Mus musculus].
          Length = 448

 Score =  113 bits (282), Expect = 5e-25
 Identities = 74/206 (35%), Positives = 107/206 (51%), Gaps = 1/206 (0%)
 Frame = +2

Query: 542  PQEAPRGAE-PWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTP 718
            P E P  A+     ++ EDGD+ LH+A++    A    ++   K     ++  NNL+QTP
Sbjct: 111  PMEHPLSADIAMATRVDEDGDTPLHIAVVQNNIAAVYRILSLFKLGSREVDVHNNLRQTP 170

Query: 719  LHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHS 898
            LHLAVIT  P++   L+ AG  P   D  G T +HLACE    + +  L     +  +  
Sbjct: 171  LHLAVITTLPDMVRLLVTAGASPMALDRHGQTAIHLACEHRSPSCLQALLDSATSGSVD- 229

Query: 899  ILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS 1078
             L+  NY G T LH+A   G    V LL+  GAD++A +  +GR+ L  AV+  + ++V 
Sbjct: 230  -LEVRNYEGLTALHVAVNTGCQEAVLLLLERGADIDAVDIKSGRSPLIHAVENNSLNMVQ 288

Query: 1079 LLLKCGADVNRVTYQGYSPYQLTWGR 1156
            LLL  GA+VN   Y G S      GR
Sbjct: 289  LLLLHGANVNAQMYSGSSALHSASGR 314


>ref|NP_659109.2| E3 ubiquitin-protein ligase MIB1 [Mus musculus].
          Length = 1006

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            +DGD  +H A   +E A+ +EV+ +   DL   N +N  +QTPLH+AV     ++ + LL
Sbjct: 495  KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550

Query: 770  EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
            + GC P L+D  G+TPLH A  +        L   G    +T   G   LH         
Sbjct: 551  DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610

Query: 899  -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
                         I+     +G+T LHLA+++ ++ + ELLV  G A+++ Q   N +TA
Sbjct: 611  AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669

Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            LHLAV+ Q+  +V LL++ GA ++     G +P
Sbjct: 670  LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
 Frame = +2

Query: 569  PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            PW   +  +DG + LHLA ++    +   +V Q   +L   + QN  QQT LHLAV    
Sbjct: 622  PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
             +I   L+ AG   +++D  G+TPLH A     L+    L Q +  Q +  +  A   + 
Sbjct: 679  TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735

Query: 926  HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
            +T +      G        I   L + GAD++ +    G++ L L  D   P L   L K
Sbjct: 736  NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791

Query: 1091 C 1093
            C
Sbjct: 792  C 792


>ref|NP_001152867.1| NF-kappa-B inhibitor zeta isoform b [Mus musculus].
          Length = 629

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
 Frame = +2

Query: 506  QMVKELREIRLEPQEAPRGAEPWKQQLTEDGD--SFLHLAIIHEEKALTMEVVRQVKGDL 679
            Q+ K   + ++E +E+     P  Q L  DGD  +FLH+A+    +AL+  + R++   L
Sbjct: 323  QLGKSFFQWQVEQEESKLANIPQDQFLARDGDGDTFLHIAVAQGRRALSYVLARKMNA-L 381

Query: 680  AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
              L+ + +  Q+   +AV  NQ  I + L+  G      D  G TPLH+  E+G    + 
Sbjct: 382  HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 441

Query: 860  VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
             + +     +    L+ATNY+G T LH A +                             
Sbjct: 442  AIQKGAVRSNQFVDLEATNYDGLTPLHCAVVAHNAVVHELQRNRQSHSPEVQDLLLRNKS 501

Query: 959  YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQG 1126
             +  ++ L+ +GA V A++  +GRTALHLA +  N +L+ L L+   C + VN   Y G
Sbjct: 502  LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNG 560


>ref|NP_001152866.1| NF-kappa-B inhibitor zeta isoform a [Mus musculus].
          Length = 728

 Score = 87.0 bits (214), Expect = 4e-17
 Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
 Frame = +2

Query: 506  QMVKELREIRLEPQEAPRGAEPWKQQLTEDGD--SFLHLAIIHEEKALTMEVVRQVKGDL 679
            Q+ K   + ++E +E+     P  Q L  DGD  +FLH+A+    +AL+  + R++   L
Sbjct: 422  QLGKSFFQWQVEQEESKLANIPQDQFLARDGDGDTFLHIAVAQGRRALSYVLARKMNA-L 480

Query: 680  AFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVG 859
              L+ + +  Q+   +AV  NQ  I + L+  G      D  G TPLH+  E+G    + 
Sbjct: 481  HMLDIKEHNGQSAFQVAVAANQHLIVQDLVNLGAQVNTTDCWGRTPLHVCAEKGHSQVLQ 540

Query: 860  VLTQPRGTQHLHSILQATNYNGHTCLHLASI---------------------------HG 958
             + +     +    L+ATNY+G T LH A +                             
Sbjct: 541  AIQKGAVRSNQFVDLEATNYDGLTPLHCAVVAHNAVVHELQRNRQSHSPEVQDLLLRNKS 600

Query: 959  YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQG 1126
             +  ++ L+ +GA V A++  +GRTALHLA +  N +L+ L L+   C + VN   Y G
Sbjct: 601  LVDTIKCLIQMGAAVEAKDRKSGRTALHLAAEEANLELIRLFLELPSCLSFVNAKAYNG 659


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,764,791
Number of extensions: 1526903
Number of successful extensions: 8507
Number of sequences better than 1.0e-05: 146
Number of HSP's gapped: 7407
Number of HSP's successfully gapped: 361
Length of query: 518
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 412
Effective length of database: 12,433,743
Effective search space: 5122702116
Effective search space used: 5122702116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001050
         (1556 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001005150.1| NF-kappa-B inhibitor alpha [Sus scrofa].          598   e-171
Alignment   gi|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus ...   136   4e-32
Alignment   gi|XP_003355945.1| PREDICTED: NF-kappa-B inhibitor beta-like [S...   108   8e-24
Alignment   gi|XP_003356417.1| PREDICTED: e3 ubiquitin-protein ligase MIB1 ...    92   8e-19
Alignment   gi|XP_003134273.2| PREDICTED: ankyrin-1-like, partial [Sus scro...    82   8e-16
Alignment   gi|XP_003125839.1| PREDICTED: ankyrin repeat domain-containing ...    80   2e-15
Alignment   gi|XP_003121353.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repe...    79   9e-15
Alignment   gi|XP_001929357.3| PREDICTED: ankyrin-3 [Sus scrofa].                 78   1e-14
Alignment   gi|XP_003129286.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin-2, p...    78   1e-14
Alignment   gi|NP_001121934.1| ankycorbin [Sus scrofa].                           77   2e-14

>ref|NP_001005150.1| NF-kappa-B inhibitor alpha [Sus scrofa].
          Length = 314

 Score =  598 bits (1543), Expect = e-171
 Identities = 296/314 (94%), Positives = 296/314 (94%)
 Frame = +2

Query: 377  MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 556
            MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP
Sbjct: 1    MFQPAEPGQEWAMEGPRDALKKERLLDDRHDSGLDSMKDEEYEQMVKELREIRLEPQEAP 60

Query: 557  RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 736
            RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI
Sbjct: 61   RGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVI 120

Query: 737  TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 916
            TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN
Sbjct: 121  TNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATN 180

Query: 917  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 1096
            YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
Sbjct: 181  YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG 240

Query: 1097 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPXXXXXXXXXXXXXXXXXXL 1276
            ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP                  L
Sbjct: 241  ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEDEL 300

Query: 1277 PYDDCVLGGQRLTL 1318
            PYDDCVLGGQRLTL
Sbjct: 301  PYDDCVLGGQRLTL 314


>ref|NP_001041697.1| nuclear factor NF-kappa-B p105 subunit [Sus scrofa].
          Length = 959

 Score =  136 bits (342), Expect = 4e-32
 Identities = 85/197 (43%), Positives = 116/197 (58%), Gaps = 3/197 (1%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 763
            E+GDS LHLAIIH    L  +++    G ++   +N +N+L QTPLHLAVIT Q  + E 
Sbjct: 525  ENGDSVLHLAIIHLHAQLVRDLLEVTSGLISDEIINMRNDLYQTPLHLAVITKQEAVVED 584

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHL 943
            LL AG D  L D  GN+ LHLA ++G    + +L + +    L   +   N  G   +H+
Sbjct: 585  LLRAGADLSLLDRLGNSVLHLAAKEGHDKILSILLKHKKAALL---INHPNGEGLNAIHV 641

Query: 944  ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTY 1120
            A +   L  + LL++ GADVNAQE  +GRTALHLAV+L N  L   LLL+  A V+  TY
Sbjct: 642  AMMSNSLPCLLLLMAAGADVNAQERKSGRTALHLAVELDNISLAGCLLLEGDAHVDSTTY 701

Query: 1121 QGYSPYQLTWGRPSTRI 1171
             G +P  +  GR STR+
Sbjct: 702  DGTTPLHIAAGRGSTRL 718



 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
 Frame = +2

Query: 596  GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
            G+S LHLA       +   +++  K  L  +N  N      +H+A+++N       L+ A
Sbjct: 599  GNSVLHLAAKEGHDKILSILLKHKKAAL-LINHPNGEGLNAIHVAMMSNSLPCLLLLMAA 657

Query: 776  GCDPELRDFR-GNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASI 952
            G D   ++ + G T LHLA E   ++  G L    G  H+ S    T Y+G T LH+A+ 
Sbjct: 658  GADVNAQERKSGRTALHLAVELDNISLAGCLLL-EGDAHVDS----TTYDGTTPLHIAAG 712

Query: 953  HGYLGIVELLVSLGAD 1000
             G   +  LL + GAD
Sbjct: 713  RGSTRLAALLKAAGAD 728


>ref|XP_003355945.1| PREDICTED: NF-kappa-B inhibitor beta-like [Sus scrofa].
          Length = 318

 Score =  108 bits (270), Expect = 8e-24
 Identities = 78/226 (34%), Positives = 102/226 (45%), Gaps = 41/226 (18%)
 Frame = +2

Query: 608  LHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDP 787
            LHLA+IH+ +   ++ +        +L+ QN+L QT LHLA I  +    E L  AG   
Sbjct: 16   LHLAVIHQHEPF-LDFLLGFAAGTEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGASL 74

Query: 788  ELRDFRGNTPLHLACEQGCLASVGVLTQPR--------------GTQHLHSI-------- 901
             + +  G+T LHLAC     A   VL QPR              G+ H            
Sbjct: 75   LVAERGGHTALHLACRVRAHACACVLLQPRPRRPRGAPNTYLAQGSDHTPDTDHTPVALY 134

Query: 902  -------------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN 1024
                               L+A NY GHT LH+A IH    +V LL   GAD+N  EP  
Sbjct: 135  PEPDLEKEEDESEEDWKLQLEAENYEGHTPLHVAVIHKDAEMVRLLREAGADLNKPEPTC 194

Query: 1025 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 1162
            GR+ LHLAV+ Q  D++ LLLK GAD     Y G +P      RP+
Sbjct: 195  GRSPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPLGSATLRPN 240



 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
 Frame = +2

Query: 545 QEAPRGAEPWKQQLTED---GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNF-QNNLQQ 712
           +E     E WK QL  +   G + LH+A+IH++     E+VR ++   A LN  +    +
Sbjct: 141 KEEDESEEDWKLQLEAENYEGHTPLHVAVIHKDA----EMVRLLREAGADLNKPEPTCGR 196

Query: 713 TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPL 820
           +PLHLAV     ++ E LL+AG DP  R + G TPL
Sbjct: 197 SPLHLAVEAQAADVLELLLKAGADPAARMYGGRTPL 232


>ref|XP_003356417.1| PREDICTED: e3 ubiquitin-protein ligase MIB1 [Sus scrofa].
          Length = 1006

 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            +DGD  +H A   +E A+ +EV+ +   DL   N +N  +QTPLH+AV     ++ + LL
Sbjct: 495  KDGDRAVHHAAFGDEGAV-IEVLHRGSADL---NARNKRRQTPLHIAVNKGHLQVVKTLL 550

Query: 770  EAGCDPELRDFRGNTPLHLACEQ------GCLASVG---VLTQPRGTQHLHS-------- 898
            + GC P L+D  G+TPLH A  +        L   G    +T   G   LH         
Sbjct: 551  DFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPS 610

Query: 899  -------------ILQATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTA 1036
                         I+     +G+T LHLA+++ ++ + ELLV  G A+++ Q   N +TA
Sbjct: 611  AMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQN-VNQQTA 669

Query: 1037 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            LHLAV+ Q+  +V LL++ GA ++     G +P
Sbjct: 670  LHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP 702



 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 6/181 (3%)
 Frame = +2

Query: 569  PW-KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            PW   +  +DG + LHLA ++    +   +V Q   +L   + QN  QQT LHLAV    
Sbjct: 622  PWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANL---DIQNVNQQTALHLAVERQH 678

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNG 925
             +I   L+ AG   +++D  G+TPLH A     L+    L Q +  Q +  +  A   + 
Sbjct: 679  TQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQ---LRQLQDMQDVGKVDAAWEPSK 735

Query: 926  HTCLHLASIHG-----YLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 1090
            +T +      G        I   L + GAD++ +    G++ L L  D   P L   L K
Sbjct: 736  NTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNK-KGQSPLDLCPD---PSLCKALAK 791

Query: 1091 C 1093
            C
Sbjct: 792  C 792


>ref|XP_003134273.2| PREDICTED: ankyrin-1-like, partial [Sus scrofa].
          Length = 1419

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 53/141 (37%), Positives = 74/141 (52%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A   NQ E+A +LL+ G        +G TPLHLA ++G    V +L   +   +L
Sbjct: 598  TPLHIAAKQNQMEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 657

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                   N +G T LHL +  G++ + ++L+  G  V+A     G T LH+A    N  L
Sbjct: 658  ------GNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRM-GYTPLHVASHYGNIKL 710

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
            V  LL+  ADVN  T  GYSP
Sbjct: 711  VKFLLQHQADVNAKTKLGYSP 731



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 58/194 (29%), Positives = 91/194 (46%)
 Frame = +2

Query: 608  LHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDP 787
            LH+A     +A   EV + +  + A +N +    QTPLH A       + + LLE   +P
Sbjct: 435  LHMAA----RAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP 490

Query: 788  ELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLG 967
             L    G+TPLH+A  +G + +   L +   +Q            G T LH+A+ +G + 
Sbjct: 491  NLATTAGHTPLHIAAREGHVETALALLEKGASQ------ACMTKKGFTPLHVAAKYGKVR 544

Query: 968  IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 1147
            + ELL+   A  NA    NG T LH+AV   + D+V LLL  G   +   + GY+P  + 
Sbjct: 545  VAELLLEHDAHPNAAGK-NGLTPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIA 603

Query: 1148 WGRPSTRIQQQLGQ 1189
              +    + + L Q
Sbjct: 604  AKQNQMEVARSLLQ 617



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 49/141 (34%), Positives = 71/141 (50%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+AV  N  +I + LL  G  P    + G TPLH+A +Q  +     L Q  G+ + 
Sbjct: 565  TPLHVAVHHNHLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANA 624

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
             S+       G T LHLA+  G+  +V LL+S  A+ N     +G T LHL     +  +
Sbjct: 625  ESV------QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPV 677

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
              +L+K G  V+  T  GY+P
Sbjct: 678  ADVLIKHGVTVDATTRMGYTP 698



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
 Frame = +2

Query: 470  SGLDSMKDEEYEQMVKEL--REIRLEPQEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKAL 643
            +GL     E + +MV EL  +EI LE               T+ G++ LH+A +  +   
Sbjct: 41   NGLHLASKEGHVKMVVELLHKEIILETT-------------TKKGNTALHIAALAGQD-- 85

Query: 644  TMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLH 823
              EVVR++    A +N Q+    TPL++A   N  E+ + LLE G +  +    G TPL 
Sbjct: 86   --EVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLA 143

Query: 824  LACEQG-----------------CLASVGVLTQPRGTQHLHSILQ------ATNYNGHTC 934
            +A +QG                  L ++ +  +   T+    +LQ        +  G T 
Sbjct: 144  VALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTP 203

Query: 935  LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 1114
            LH+A+ +  L + +LL++ GA VN   P NG T LH+A    N  +V LLL  GA +   
Sbjct: 204  LHIAAHYENLNVAQLLLNRGASVNF-TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETR 262

Query: 1115 TYQGYSPYQLTWGRPSTRIQQQL 1183
            T    +P          RI + L
Sbjct: 263  TKDELTPLHCAARNGHLRISEIL 285



 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 48/144 (33%), Positives = 68/144 (47%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A    +  +AE LLE    P      G TPLH+A     L  V +L    G+ H 
Sbjct: 532  TPLHVAAKYGKVRVAELLLEHDAHPNAAGKNGLTPLHVAVHHNHLDIVKLLLPRGGSPH- 590

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                 +  +NG+T LH+A+    + +   L+  G   NA E   G T LHLA    + ++
Sbjct: 591  -----SPAWNGYTPLHIAAKQNQMEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEM 644

Query: 1073 VSLLLKCGADVNRVTYQGYSPYQL 1144
            V+LLL   A+ N     G +P  L
Sbjct: 645  VALLLSKQANGNLGNKSGLTPLHL 668



 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 45/141 (31%), Positives = 72/141 (51%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A       +A+ LL  G         G TPLH+A  +G +  V +L   RG Q  
Sbjct: 202  TPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLD-RGAQ-- 258

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
               ++    +  T LH A+ +G+L I E+L+  GA + A+   NG + +H+A    + D 
Sbjct: 259  ---IETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTK-NGLSPIHMAAQGDHLDC 314

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
            V LLL+  A+++ +T    +P
Sbjct: 315  VRLLLQYNAEIDDITLDHLTP 335



 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 28/172 (16%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCL----------ASVGV 862
            TPLH+A       +A+ LL+ G  P  R   G TPLH+AC++  +          AS+  
Sbjct: 334  TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDA 393

Query: 863  LTQPRGTQHLH------------SILQ------ATNYNGHTCLHLASIHGYLGIVELLVS 988
            +T+  G   LH            ++LQ       +N    T LH+A+  G+  + + L+ 
Sbjct: 394  VTE-SGLTPLHVASFMGHLPIVKNLLQRDASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 452

Query: 989  LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 1144
              A VNA+   + +T LH A  + + ++V LLL+  A+ N  T  G++P  +
Sbjct: 453  NKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 503



 Score = 60.1 bits (144), Expect = 3e-09
 Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 27/217 (12%)
 Frame = +2

Query: 566  EPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 745
            +P    L++ G + LH+A  +E     + V + +    A +NF      TPLH+A     
Sbjct: 190  DPNPDVLSKTGFTPLHIAAHYEN----LNVAQLLLNRGASVNFTPQNGITPLHIASRRGN 245

Query: 746  PEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---------PRGTQHLHS 898
              +   LL+ G   E R     TPLH A   G L    +L             G   +H 
Sbjct: 246  VIMVRLLLDRGAQIETRTKDELTPLHCAARNGHLRISEILLDHGAPIQAKTKNGLSPIHM 305

Query: 899  ILQATN---------YNGH---------TCLHLASIHGYLGIVELLVSLGADVNAQEPCN 1024
              Q  +         YN           T LH+A+  G+  + ++L+  GA  N++   N
Sbjct: 306  AAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSR-ALN 364

Query: 1025 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            G T LH+A    +  ++ LLLK GA ++ VT  G +P
Sbjct: 365  GFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTP 401



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 38/120 (31%), Positives = 54/120 (45%)
 Frame = +2

Query: 689  NFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLT 868
            N  N    TPLHL        +A+ L++ G   +     G TPLH+A   G +  V  L 
Sbjct: 656  NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLL 715

Query: 869  QPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
            Q +        + A    G++ LH A+  G+  IV LL+  GA  N +   NG T L +A
Sbjct: 716  QHQAD------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN-EVSSNGTTPLAIA 768


>ref|XP_003125839.1| PREDICTED: ankyrin repeat domain-containing protein 35 [Sus scrofa].
          Length = 995

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 66/214 (30%), Positives = 103/214 (48%)
 Frame = +2

Query: 488  KDEEYEQMVKELREIRLEPQEAPRGAEPWKQQLTEDGDSFLHLAIIHEEKALTMEVVRQV 667
            +D++  + V+     R+    + + A P K  L  +G S  HLA     K LT E +  +
Sbjct: 20   RDQKLLEAVQRGDVGRVAALASRKSARPTK--LDSNGQSPFHLAA---SKGLT-ECLTIL 73

Query: 668  KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCL 847
              + A +N +N    T LHLA I+ QP+  + LL+ G + +  D    +PLH A   GC 
Sbjct: 74   LANGADINSKNEDGSTALHLATISCQPQCVKVLLQHGANEDAVDVENRSPLHWAASSGCA 133

Query: 848  ASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 1027
            +SV +L          + L   +  G T L +AS+ G+  I   L+  GA VN  +  N 
Sbjct: 134  SSVLLLCDH------EAFLDVLDNGGRTPLMIASLGGHAAICSQLLQRGARVNITDK-ND 186

Query: 1028 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 1129
            ++AL LA +  + ++  LLL  GAD   V   G+
Sbjct: 187  KSALILACEKGSAEVAELLLSHGADAGAVDSTGH 220


>ref|XP_003121353.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat domain-containing
            protein 6-like [Sus scrofa].
          Length = 727

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
 Frame = +2

Query: 575  KQQLTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 754
            K  +T+ G + LHLA  ++     ++++ +   DL   + Q++  QT LH A +    E+
Sbjct: 35   KVAVTKHGRTALHLAA-NKGHLSVVQILLKAGCDL---DVQDDGDQTALHRATVVGNTEV 90

Query: 755  AEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ---------PRGTQHLHSILQ 907
              AL++ GC  + +D  GNT LH A   G   S  +L +           G   LH   Q
Sbjct: 91   IAALIQEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLAKNKAGNTALHLACQ 150

Query: 908  AT------------------NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 1033
             +                  N  G TCLH+A+ + +L I++LL+S    V+ +    G T
Sbjct: 151  NSHAQSTRVLLLGGSRADLKNNAGDTCLHVAARYNHLSIIKLLLSAFCSVHEKNQA-GDT 209

Query: 1034 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ 1141
            ALH+A  L +  +V +LL+ GAD   V   G +P +
Sbjct: 210  ALHIAAALNHKKVVKILLEAGADGTIVNNAGQTPLE 245


>ref|XP_001929357.3| PREDICTED: ankyrin-3 [Sus scrofa].
          Length = 1855

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 52/141 (36%), Positives = 74/141 (52%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A   NQ +IA  LLE G D      +G   +HLA ++G +  V +L       +L
Sbjct: 603  TPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHLAAQEGHVDMVSLLLSRNANVNL 662

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                  +N +G T LHLA+    + + E+LV+ GA V+AQ    G T LH+     N  +
Sbjct: 663  ------SNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKM-GYTPLHVGCHYGNIKI 715

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
            V+ LL+  A VN  T  GY+P
Sbjct: 716  VNFLLQHSAKVNAKTKNGYTP 736



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 56/183 (30%), Positives = 84/183 (45%)
 Frame = +2

Query: 596  GDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEA 775
            G++ LH+A     ++   EVVR +  D A +  +    QTPLH++    + +I + LL+ 
Sbjct: 436  GETALHMAA----RSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQ 491

Query: 776  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIH 955
            G  P      G TPLHL+  +G    V       G       L  T   G T LH+A+ +
Sbjct: 492  GASPNAATTSGYTPLHLSAREG-HEDVAAFLLDHGAS-----LSITTKKGFTPLHVAAKY 545

Query: 956  GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            G L +  LL+   A  +A    +G T LH+A    N  +  LLL  GA  +     GY+P
Sbjct: 546  GKLEVANLLLQKSASPDAAGK-SGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTP 604

Query: 1136 YQL 1144
              +
Sbjct: 605  LHI 607



 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCL----------ASVGV 862
            T LH+A      ++A+ LL+   +P  +   G TPLH+AC++  +          AS+  
Sbjct: 339  TALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQA 398

Query: 863  LTQPRGTQ--------HLHSILQ---------ATNYNGHTCLHLASIHGYLGIVELLVSL 991
            +T+   T         H++ + Q          TN  G T LH+A+  G   +V  LV  
Sbjct: 399  VTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQD 458

Query: 992  GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 1147
            GA V A+   + +T LH++  L   D+V  LL+ GA  N  T  GY+P  L+
Sbjct: 459  GAQVEAKAK-DDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLS 509



 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 52/165 (31%), Positives = 78/165 (47%)
 Frame = +2

Query: 650  EVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLA 829
            ++V+Q+    A  N       TPLHL+      ++A  LL+ G    +   +G TPLH+A
Sbjct: 483  DIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLSITTKKGFTPLHVA 542

Query: 830  CEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 1009
             + G L    +L Q   +        A   +G T LH+A+ +    +  LL+  GA  +A
Sbjct: 543  AKYGKLEVANLLLQKSASP------DAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHA 596

Query: 1010 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 1144
                NG T LH+A      D+ + LL+ GAD N VT QG +   L
Sbjct: 597  AAK-NGYTPLHIAAKKNQMDIATTLLEYGADANAVTRQGIASVHL 640



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 48/144 (33%), Positives = 67/144 (46%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A    + E+A  LL+    P+     G TPLH+A          +L     + H 
Sbjct: 537  TPLHVAAKYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPH- 595

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                 A   NG+T LH+A+    + I   L+  GAD NA     G  ++HLA    + D+
Sbjct: 596  -----AAAKNGYTPLHIAAKKNQMDIATTLLEYGADANAVTR-QGIASVHLAAQEGHVDM 649

Query: 1073 VSLLLKCGADVNRVTYQGYSPYQL 1144
            VSLLL   A+VN     G +P  L
Sbjct: 650  VSLLLSRNANVNLSNKSGLTPLHL 673



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 45/141 (31%), Positives = 68/141 (48%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TP+H+A       I   L+  G  P   + RG T LH+A   G    V  L Q  G Q  
Sbjct: 405  TPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQD-GAQ-- 461

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
               ++A   +  T LH+++  G   IV+ L+  GA  NA    +G T LHL+    + D+
Sbjct: 462  ---VEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNA-ATTSGYTPLHLSAREGHEDV 517

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
             + LL  GA ++  T +G++P
Sbjct: 518  AAFLLDHGASLSITTKKGFTP 538



 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 23/206 (11%)
 Frame = +2

Query: 587  TEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 766
            T+ G++ LH+A +    A   EVV+ +  + A +N Q+    TPL++A   N  E+ + L
Sbjct: 74   TKKGNTALHIASL----AGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFL 129

Query: 767  LEAGCDPELRDFRGNTPLHLACEQG-----------------CLASVGVLTQPRGTQHLH 895
            L+ G    L    G TPL +A +QG                  L ++ +  +   T+   
Sbjct: 130  LDNGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAA 189

Query: 896  SILQATN------YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 1057
             +LQ  N       +G T LH+A+ +G + +  LL++  A V+     N  T LH+A   
Sbjct: 190  LLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTAR-NDITPLHVASKR 248

Query: 1058 QNPDLVSLLLKCGADVNRVTYQGYSP 1135
             N ++V LLL  GA ++  T  G +P
Sbjct: 249  GNANMVKLLLDRGAKIDAKTRDGLTP 274



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 41/123 (33%), Positives = 66/123 (53%)
 Frame = +2

Query: 767  LEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLA 946
            ++ G D  + +  G   LHLA ++G +  V  L Q   +      + A    G+T LH+A
Sbjct: 31   IKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREAS------VDAATKKGNTALHIA 84

Query: 947  SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 1126
            S+ G   +V++LV+ GA+VNAQ   NG T L++A    + ++V  LL  GA  +  T  G
Sbjct: 85   SLAGQAEVVKVLVTNGANVNAQSQ-NGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDG 143

Query: 1127 YSP 1135
            ++P
Sbjct: 144  FTP 146



 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 1/156 (0%)
 Frame = +2

Query: 584  LTEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 763
            +T  G + +HLA         +++V  +    A +N  N    TPLHLA   ++  +AE 
Sbjct: 630  VTRQGIASVHLAAQEGH----VDMVSLLLSRNANVNLSNKSGLTPLHLAAQEDRVNVAEV 685

Query: 764  LLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSI-LQATNYNGHTCLH 940
            L+  G   + +   G TPLH+ C  G +  V  L Q       HS  + A   NG+T LH
Sbjct: 686  LVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQ-------HSAKVNAKTKNGYTPLH 738

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 1048
             A+  G+  I+ +L+   A  N +   NG TAL +A
Sbjct: 739  QAAQQGHTHIINVLLQNDASPN-ELTVNGNTALAIA 773



 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 47/157 (29%), Positives = 73/157 (46%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH    +   ++ E LL+       +   G +PLH+A +   L  V +L Q     H 
Sbjct: 273  TPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQ-----HN 327

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
              +   TN +  T LH+A+  G+  + ++L+   A+ NA+   NG T LH+A       +
Sbjct: 328  VPVDDVTN-DYLTALHVAAHCGHYKVAKVLLDKKANPNAKA-LNGFTPLHIACKKNRIKV 385

Query: 1073 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 1183
            + LLLK GA +  VT  G +P  +        I  QL
Sbjct: 386  MELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQL 422



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 46/185 (24%), Positives = 82/185 (44%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            ++G + LHLA     K   +EVV ++    A ++       T LH+A +  Q E+ + L+
Sbjct: 42   QNGLNALHLA----SKEGHVEVVSELLQREASVDAATKKGNTALHIASLAGQAEVVKVLV 97

Query: 770  EAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLAS 949
              G +   +   G TPL++A ++  L  V  L     +Q L         +G T L +A 
Sbjct: 98   TNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSL------ATEDGFTPLAVAL 151

Query: 950  IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGY 1129
              G+  +V LL+        + P     ALH+A    +    +LLL+   + +  +  G+
Sbjct: 152  QQGHDQVVSLLLENDTKGKVRLP-----ALHIAARKDDTKAAALLLQNDNNADVESKSGF 206

Query: 1130 SPYQL 1144
            +P  +
Sbjct: 207  TPLHI 211


>ref|XP_003129286.2| PREDICTED: LOW QUALITY PROTEIN: ankyrin-2, partial [Sus scrofa].
          Length = 4181

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 55/165 (33%), Positives = 80/165 (48%)
 Frame = +2

Query: 650  EVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLA 829
            E+V+ +   +A  +       TPLH++    Q ++A  LLEAG    L   +G TPLH+A
Sbjct: 16   EIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVA 75

Query: 830  CEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 1009
             + G L    +L Q R      +   +   NG T LH+A+ +    +  LL+  GA  +A
Sbjct: 76   AKYGSLDVAKLLLQRR------AAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHA 129

Query: 1010 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 1144
                NG T LH+A       + S LL  GA+ N VT QG +P  L
Sbjct: 130  TAK-NGYTPLHIAAKKNQMQIASTLLNYGAETNIVTKQGVTPLHL 173



 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 56/179 (31%), Positives = 90/179 (50%)
 Frame = +2

Query: 590  EDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 769
            ++G + LH+A  ++ + + + ++   KG       +N    TPLH+A   NQ +IA  LL
Sbjct: 99   KNGLTPLHVAAHYDNQKVALLLLE--KGASPHATAKNGY--TPLHIAAKKNQMQIASTLL 154

Query: 770  EAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLHLAS 949
              G +  +   +G TPLHLA ++G    V +L       H+      +  +G T LHLA+
Sbjct: 155  NYGAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHM------STKSGLTSLHLAA 208

Query: 950  IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 1126
                + + ++L   GAD +A     G T L +A    N  +V+ LLK GA+VN  T +G
Sbjct: 209  QEDKVNVADILTKHGADQDAHTKL-GYTPLIVACHYGNVKMVNFLLKQGANVNAKTKRG 266



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 48/159 (30%), Positives = 75/159 (47%)
 Frame = +2

Query: 707  QQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQ 886
            +QTPLH+A    + EI + LL+    P+     G TPLH++  +G +    VL +  G  
Sbjct: 2    EQTPLHIASRLGKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLE-AGAA 60

Query: 887  HLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 1066
            H           G T LH+A+ +G L + +LL+   A  ++    NG T LH+A    N 
Sbjct: 61   H-----SLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGK-NGLTPLHVAAHYDNQ 114

Query: 1067 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 1183
             +  LLL+ GA  +     GY+P  +   +   +I   L
Sbjct: 115  KVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTL 153



 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 58/185 (31%), Positives = 97/185 (52%), Gaps = 2/185 (1%)
 Frame = +2

Query: 587  TEDGDSFLHLAIIHEEKALTMEVVRQV--KGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 760
            T+ G++ LH+A     +A  +EVVR +   G L     +++   + L  A   N  ++ E
Sbjct: 263  TKRGETALHMAA----RAGQVEVVRCLLRNGALVDARARSDSNASFLRAARAGNLDKVVE 318

Query: 761  ALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHLHSILQATNYNGHTCLH 940
              L+ G D    +  G   LHLA ++G    VG++ +  G     S + +    G+T LH
Sbjct: 319  -YLKGGIDINTCNQNGLNALHLAAKEG---HVGLVQELLGRG---SSVDSATKKGNTALH 371

Query: 941  LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY 1120
            +AS+ G   +V++LV  GA++NAQ   NG T L++A    + D+V  LL+ GA+ +  T 
Sbjct: 372  IASLAGQAEVVKVLVKEGANINAQSQ-NGFTPLYMAAQENHIDVVKYLLENGANQSTATE 430

Query: 1121 QGYSP 1135
             G++P
Sbjct: 431  DGFTP 435



 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 46/141 (32%), Positives = 69/141 (48%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A   +  ++A  LLE G  P      G TPLH+A ++  +     L       ++
Sbjct: 103  TPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNYGAETNI 162

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
                      G T LHLAS  G+  +V LL+  GA+++     +G T+LHLA      ++
Sbjct: 163  ------VTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTK-SGLTSLHLAAQEDKVNV 215

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
              +L K GAD +  T  GY+P
Sbjct: 216  ADILTKHGADQDAHTKLGYTP 236



 Score = 68.6 bits (166), Expect = 9e-12
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 28/211 (13%)
 Frame = +2

Query: 587  TEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 766
            T+ G + LHLA   E+K    +++ +   D    +    L  TPL +A      ++   L
Sbjct: 197  TKSGLTSLHLAA-QEDKVNVADILTKHGADQ---DAHTKLGYTPLIVACHYGNVKMVNFL 252

Query: 767  LEAGCDPELRDFRGNTPLHLACEQG------CLASVGVLTQPRGTQHLH-SILQAT---- 913
            L+ G +   +  RG T LH+A   G      CL   G L   R     + S L+A     
Sbjct: 253  LKQGANVNAKTKRGETALHMAARAGQVEVVRCLLRNGALVDARARSDSNASFLRAARAGN 312

Query: 914  -----------------NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 1042
                             N NG   LHLA+  G++G+V+ L+  G+ V++     G TALH
Sbjct: 313  LDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATK-KGNTALH 371

Query: 1043 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
            +A      ++V +L+K GA++N  +  G++P
Sbjct: 372  IASLAGQAEVVKVLVKEGANINAQSQNGFTP 402



 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 59/214 (27%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
 Frame = +2

Query: 587  TEDGDSFLHLAIIHEEKALTMEVVRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 766
            T+ G++ LH+A +    A   EVV+ +  + A +N Q+    TPL++A   N  ++ + L
Sbjct: 363  TKKGNTALHIASL----AGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYL 418

Query: 767  LEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ--PRGTQHLHSI------------- 901
            LE G +       G TPL +A +QG   +V +L +   +G   L ++             
Sbjct: 419  LENGANQSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDTKSAA 478

Query: 902  ----------------LQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT 1033
                            +  T  +G T LH+A+ +G + +  LL++ GA V+     NG T
Sbjct: 479  LLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTAR-NGIT 537

Query: 1034 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 1135
             LH+A    N ++V LLL  G  ++  T  G +P
Sbjct: 538  PLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTP 571



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 42/132 (31%), Positives = 68/132 (51%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            T LH+A       + + LL+   +P  R   G TPLH+AC++  +  + +L +       
Sbjct: 636  TALHVAAHCGHYRVTKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVK------Y 689

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
             + +QA   +G T +H+A+  G+L IV LL+  GA  +      G TALH+A      ++
Sbjct: 690  GASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTN-IRGETALHMAARAGQVEV 748

Query: 1073 VSLLLKCGADVN 1108
            V  LL+ GA V+
Sbjct: 749  VRCLLRNGALVD 760



 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 43/141 (30%), Positives = 68/141 (48%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH A  +   ++ E LLE G     R   G +PLH+A +   +  V  L Q +     
Sbjct: 570  TPLHCAARSGHDQVVELLLERGAPLLARTKNGLSPLHMAAQGDHVECVKHLLQHKAP--- 626

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
               +     +  T LH+A+  G+  + +LL+   A+ NA+   NG T LH+A       +
Sbjct: 627  ---VDDVTLDYLTALHVAAHCGHYRVTKLLLDKRANPNAR-ALNGFTPLHIACKKNRIKV 682

Query: 1073 VSLLLKCGADVNRVTYQGYSP 1135
            + LL+K GA +  +T  G +P
Sbjct: 683  MELLVKYGASIQAITESGLTP 703



 Score = 58.9 bits (141), Expect = 7e-09
 Identities = 47/135 (34%), Positives = 68/135 (50%)
 Frame = +2

Query: 713  TPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQPRGTQHL 892
            TPLH+A       +A  LL  G   +     G TPLH+A ++G    V +L   RG Q  
Sbjct: 504  TPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLD-RGGQ-- 560

Query: 893  HSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 1072
               + A   +G T LH A+  G+  +VELL+  GA + A+   NG + LH+A    + + 
Sbjct: 561  ---IDAKTRDGLTPLHCAARSGHDQVVELLLERGAPLLARTK-NGLSPLHMAAQGDHVEC 616

Query: 1073 VSLLLKCGADVNRVT 1117
            V  LL+  A V+ VT
Sbjct: 617  VKHLLQHKAPVDDVT 631


>ref|NP_001121934.1| ankycorbin [Sus scrofa].
          Length = 980

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 50/146 (34%), Positives = 80/146 (54%)
 Frame = +2

Query: 695  QNNLQQTPLHLAVITNQPEIAEALLEAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQP 874
            Q+    + LHLA   +  E  + LL++ C  E  D  G T LH A  QGCL +V VL + 
Sbjct: 82   QDTAGHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEH 141

Query: 875  RGTQHLHSILQATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 1054
            +   +L  +      +G+  L LA  +G+  +   L+  GADVN+++  NGRTAL LA +
Sbjct: 142  KSPINLKDL------DGNIPLLLAVQNGHSEVCRFLLDHGADVNSRDK-NGRTALMLACE 194

Query: 1055 LQNPDLVSLLLKCGADVNRVTYQGYS 1132
            + + ++V  L+  GAD++ V   G++
Sbjct: 195  IGSSNIVEALITKGADLSLVDSLGHN 220


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,028,065
Number of extensions: 1248154
Number of successful extensions: 7132
Number of sequences better than 1.0e-05: 94
Number of HSP's gapped: 6438
Number of HSP's successfully gapped: 221
Length of query: 518
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 415
Effective length of database: 8,779,541
Effective search space: 3643509515
Effective search space used: 3643509515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001050
         (1556 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                        1168   0.0  

>Sscrofa_Chr07 
||          Length = 134764511

 Score = 1168 bits (589), Expect = 0.0
 Identities = 601/605 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        ccgggggagggggccgggtcgggaggactttccagccactcagcgtgcattaaaaagttc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417309 ccgggggagggggccgggtcgggaggactttccagccactcagcgtgcattaaaaagttc 69417368

                                                                            
Query: 61       cctgtacatgaccccagtggctcatcgcagggagtttctctgatgaacccgggcgcgggg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417369 cctgtacatgaccccagtggctcatcgcagggagtttctctgatgaacccgggcgcgggg 69417428

                                                                            
Query: 121      tttaggcttctttttcccccagcagaggacgaggccagttctcttttctggtctgactgg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417429 tttaggcttctttttcccccagcagaggacgaggccagttctcttttctggtctgactgg 69417488

                                                                            
Query: 181      cttggaaattccccgagcttgaccccgcccaggagaaatcccctgccagcgtttataggg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417489 cttggaaattccccgagcttgaccccgcccaggagaaatcccctgccagcgtttataggg 69417548

                                                                            
Query: 241      cgccgcggcggcgctgccgactgcacaacagtccgaggccatcgtcccgcccgcccgagc 300
                ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 69417549 cgccgcggcggcgctgccgagcccacaacagtccgaggccatcgtcccgcccgcccgagc 69417608

                                                                            
Query: 301      caccgcgagcagccagcgcgccgcgcagcctgtggcccgcgcacctagggagcagcgccc 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417609 caccgcgagcagccagcgcgccgcgcagcctgtggcccgcgcacctagggagcagcgccc 69417668

                                                                            
Query: 361      aagccctcatcgcgccatgttccagcccgcagagcccggccaggagtgggccatggaggg 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417669 aagccctcatcgcgccatgttccagcccgcagagcccggccaggagtgggccatggaggg 69417728

                                                                            
Query: 421      gccccgggacgcgctcaagaaggagcggctactggacgaccgccacgacagcggcctgga 480
                |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 69417729 gccccgggacgcgctcaagaaggagcggctactggatgaccgccacgacagcggcctgga 69417788

                                                                            
Query: 481      ctccatgaaggacgaggagtacgagcagatggtgaaggagctgcgcgagatccgcctcga 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417789 ctccatgaaggacgaggagtacgagcagatggtgaaggagctgcgcgagatccgcctcga 69417848

                                                                            
Query: 541      gccgcaggaggcgccccgcggcgccgagccctggaagcagcagctcaccgaggacggaga 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69417849 gccgcaggaggcgccccgcggcgccgagccctggaagcagcagctcaccgaggacggaga 69417908

                     
Query: 601      ctcgt 605
                |||||
Sbjct: 69417909 ctcgt 69417913



 Score =  525 bits (265), Expect = e-146
 Identities = 265/265 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1009     tcaggagccctgcaatggccgaaccgccctgcatcttgcggtggacctgcagaatcccga 1068
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419649 tcaggagccctgcaatggccgaaccgccctgcatcttgcggtggacctgcagaatcccga 69419708

                                                                            
Query: 1069     cctggtgtcgctcttgttgaagtgtggggctgatgtcaacagagtcacctaccagggcta 1128
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419709 cctggtgtcgctcttgttgaagtgtggggctgatgtcaacagagtcacctaccagggcta 69419768

                                                                            
Query: 1129     ctccccgtaccagctcacctggggccgcccaagcactcggatacagcagcagctgggcca 1188
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419769 ctccccgtaccagctcacctggggccgcccaagcactcggatacagcagcagctgggcca 69419828

                                                                            
Query: 1189     gctgaccctagaaaacctccagatgcttccagagagcgaggatgaggagagctatgacac 1248
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419829 gctgaccctagaaaacctccagatgcttccagagagcgaggatgaggagagctatgacac 69419888

                                         
Query: 1249     ggagtcagagttcacagaggatgag 1273
                |||||||||||||||||||||||||
Sbjct: 69419889 ggagtcagagttcacagaggatgag 69419913



 Score =  424 bits (214), Expect = e-116
 Identities = 214/214 (100%)
 Strand = Plus / Plus

                                                                            
Query: 711      agactccactccacttggcggtgatcaccaaccagccagaaatcgctgaggcacttctgg 770
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69418944 agactccactccacttggcggtgatcaccaaccagccagaaatcgctgaggcacttctgg 69419003

                                                                            
Query: 771      aagctggctgtgatcctgagctccgagactttcgaggaaatacccctctacaccttgcct 830
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419004 aagctggctgtgatcctgagctccgagactttcgaggaaatacccctctacaccttgcct 69419063

                                                                            
Query: 831      gtgagcagggctgcctggccagtgtgggagtcctgactcagccccgcgggacccagcacc 890
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419064 gtgagcagggctgcctggccagtgtgggagtcctgactcagccccgcgggacccagcacc 69419123

                                                  
Query: 891      tccactccattctgcaggccaccaactacaatgg 924
                ||||||||||||||||||||||||||||||||||
Sbjct: 69419124 tccactccattctgcaggccaccaactacaatgg 69419157



 Score =  232 bits (117), Expect = 5e-58
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1272     agctgccctatgacgactgcgtgcttggaggccagcgcctgacgttatgagctttggaaa 1331
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69420271 agctgccctatgacgactgcgtgcttggaggccagcgcctgacgttatgagctttggaaa 69420330

                                                                         
Query: 1332     gtgtctaaaagaccatggacttgtacatttgtacaaaatcaagagttttatttttct 1388
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69420331 gtgtctaaaagaccatggacttgtacatttgtacaaaatcaagagttttatttttct 69420387



 Score =  216 bits (109), Expect = 3e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                            
Query: 604      gttcctgcacttggccatcatccatgaagagaaggcactgaccatggaagtggtccgcca 663
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69418486 gttcctgcacttggccatcatccatgaagagaaggcactgaccatggaagtggtccgcca 69418545

                                                                 
Query: 664      agtgaagggagatctggcttttcttaacttccagaacaacctgcagcag 712
                |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69418546 agtgaagggagatctggcttttcttaacttccagaacaacctgcagcag 69418594



 Score =  196 bits (99), Expect = 3e-47
 Identities = 130/135 (96%), Gaps = 4/135 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1426     tatacttataaccacaccgcacactgcctggcctgaaacattttgctctggtgga-tagc 1484
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 69420425 tatacttataaccacaccgcacactgcctggcctgaaacattttgctctggtggattagc 69420484

                                                                            
Query: 1485     cccgattttg-tattcttgtgaactttggaaa-gcgcc-aggaggatcatcggaatgcaa 1541
                |||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| 
Sbjct: 69420485 cccgattttgttattcttgtgaactttggaaaggcgccaaggaggatcatcggaatgcag 69420544

                               
Query: 1542     agagaacctctttta 1556
                |||||||||||||||
Sbjct: 69420545 agagaacctctttta 69420559



 Score =  180 bits (91), Expect = 2e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                            
Query: 923      ggccacacatgtctgcacttagcctcgatccatggctacctgggcattgtggagctgttg 982
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69419445 ggccacacatgtctgcacttagcctcgatccatggctacctgggcattgtggagctgttg 69419504

                                               
Query: 983      gtgtctttgggtgctgatgtcaacgctcagg 1013
                |||||||||||||||||||||||||||||||
Sbjct: 69419505 gtgtctttgggtgctgatgtcaacgctcagg 69419535


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,983,548
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 7
Length of query: 1556
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1535
Effective length of database: 2,808,413,156
Effective search space: 4310914194460
Effective search space used: 4310914194460
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)