Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001054
(1063 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007813.1| ATP synthase subunit s, mitochondrial precur... 68 1e-11
>ref|NP_001007813.1| ATP synthase subunit s, mitochondrial precursor [Bos taurus].
Length = 200
Score = 68.2 bits (165), Expect = 1e-11
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 AVREYLLRKQAL-KVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 358
A E+LLR A+ + H + R+Q + + L + +QA+DA+ I G
Sbjct: 50 AASEWLLRCGAMVRYHGQQRWQ--------KDYNHLPTGPLDKYKIQAIDATDSCIMSIG 101
Query: 359 LDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHH 529
D+ +C +++D CL RL QL + S+ E+ + C V+++G+ LHH
Sbjct: 102 FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 161
Query: 530 LQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 634
+NL+ L +SDLP V + + LP+ E++
Sbjct: 162 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,309,199
Number of extensions: 1288616
Number of successful extensions: 6594
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6546
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001054
(1063 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiar... 282 4e-76
Alignment gi|XP_547805.2| PREDICTED: similar to ATP synthase subunit s, m... 66 5e-11
>ref|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiaris].
Length = 400
Score = 282 bits (721), Expect = 4e-76
Identities = 149/243 (61%), Positives = 173/243 (71%), Gaps = 30/243 (12%)
Frame = +2
Query: 50 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 223
LH VA N+ T IR LSR PEG+Q+KGR+LLQFLAD F DV+A+REYLLRKQA K+
Sbjct: 151 LHLVAPRWNAGTRGIRGLSRAAAPEGNQKKGRSLLQFLADRFYDVQALREYLLRKQAWKM 210
Query: 224 HRKNR---------------------------FQDNEWIQSG-RGLSSLEFRKFREVPVQ 319
H+KNR FQ EWI+S RG SL+F K + VPV+
Sbjct: 211 HQKNRPFTYIRERYGPYAAGAYFILKLGGAVKFQGKEWIRSNARGHFSLDFLKLQTVPVE 270
Query: 320 AVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRV 499
AVDASGCA+NYQGLD+ RCPHVDDWCL RLH LA SLQELSLAGCP++
Sbjct: 271 AVDASGCAVNYQGLDSLLALKELQVLWLQRCPHVDDWCLSRLHPLASSLQELSLAGCPKI 330
Query: 500 SERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQ 679
SERGLACLHHLQNLR+LDISDLPAVS+P LTQILVEEMLP+C+V G+DWA+GLK+G EEQ
Sbjct: 331 SERGLACLHHLQNLRKLDISDLPAVSNPGLTQILVEEMLPDCKVVGADWARGLKVGQEEQ 390
Query: 680 SRD 688
+D
Sbjct: 391 YQD 393
>ref|XP_547805.2| PREDICTED: similar to ATP synthase subunit s, mitochondrial
precursor (ATP synthase coupling factor B)
(Mitochondrial ATP synthase regulatory component factor
B) [Canis familiaris].
Length = 200
Score = 66.2 bits (160), Expect = 5e-11
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 AVREYLLRKQAL-KVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 358
A E+LLR A+ + H + R+Q + ++L + +QA+DA+ I G
Sbjct: 50 AASEWLLRCGAMVRYHGQERWQ--------KDYNNLPTGPLDKYKIQAIDATDSCIMSFG 101
Query: 359 LDNXXXXXXXXXXXXXRCPHVDDWCL---GRLHQLADSLQELSLAGCPRVSERGLACLHH 529
D+ +C +++D CL G+L L S+ E+ + C ++++G+ L+H
Sbjct: 102 FDHLEGLQHVEKIRLCKCHYIEDNCLERLGKLENLQKSILEMEIISCGNITDKGIMALYH 161
Query: 530 LQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 634
L+NL+ L +SDLP V + + + LP+ E++
Sbjct: 162 LRNLKYLLLSDLPGVREKENLIQIFKTALPSLELK 196
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,058,416
Number of extensions: 1320682
Number of successful extensions: 6644
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6606
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001054
(1063 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161343.1| ATP synthase subunit s-like protein isoform ... 276 2e-74
Alignment gi|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [... 261 6e-70
Alignment gi|NP_001161339.1| ATP synthase subunit s-like protein isoform ... 257 1e-68
Alignment gi|NP_001161342.1| ATP synthase subunit s-like protein isoform ... 117 2e-26
Alignment gi|NP_001161341.1| ATP synthase subunit s-like protein isoform ... 102 6e-22
Alignment gi|NP_001161340.1| ATP synthase subunit s-like protein isoform ... 98 1e-20
Alignment gi|NP_001003803.1| ATP synthase subunit s, mitochondrial isofor... 62 7e-10
>ref|NP_001161343.1| ATP synthase subunit s-like protein isoform 5 [Homo sapiens].
Length = 230
Score = 276 bits (706), Expect = 2e-74
Identities = 145/223 (65%), Positives = 164/223 (73%), Gaps = 3/223 (1%)
Frame = +2
Query: 29 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 202
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 203 RKQALKVHRKNRFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCAINYQGLDNXXXX 379
+++ KVH KNRF+D EWI+ + G S EF F EVPV+AVDA C INY+GLDN
Sbjct: 61 QREMYKVHEKNRFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNLLRL 120
Query: 380 XXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQNLRRLDIS 559
RC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACLHHLQNLRRLDIS
Sbjct: 121 KELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACLHHLQNLRRLDIS 180
Query: 560 DLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 688
DLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 181 DLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 223
>ref|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [Homo sapiens].
Length = 257
Score = 261 bits (668), Expect = 6e-70
Identities = 145/250 (58%), Positives = 164/250 (65%), Gaps = 30/250 (12%)
Frame = +2
Query: 29 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 202
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 203 RKQALKVHRKNR---------------------------FQDNEWIQSGR-GLSSLEFRK 298
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 299 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELS 478
F EVPV+AVDA C INY+GLDN RC HVDDWCL RL+ LADSLQELS
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELS 180
Query: 479 LAGCPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGL 658
LAGCPR+SERGLACLHHLQNLRRLDISDLPAVS+P LTQILVEEMLPNCEV G DWA+GL
Sbjct: 181 LAGCPRISERGLACLHHLQNLRRLDISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGL 240
Query: 659 KLGLEEQSRD 688
K G EEQ RD
Sbjct: 241 KSGPEEQPRD 250
>ref|NP_001161339.1| ATP synthase subunit s-like protein isoform 1 [Homo sapiens].
Length = 263
Score = 257 bits (656), Expect = 1e-68
Identities = 137/235 (58%), Positives = 156/235 (66%), Gaps = 28/235 (11%)
Frame = +2
Query: 68 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNR--- 238
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNR
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 239 ------------------------FQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 343
F+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 344 INYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACL 523
INY+GLDN RC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACL
Sbjct: 142 INYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACL 201
Query: 524 HHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 688
HHLQNLRRLDISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 202 HHLQNLRRLDISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 256
>ref|NP_001161342.1| ATP synthase subunit s-like protein isoform 6 [Homo sapiens].
Length = 158
Score = 117 bits (292), Expect = 2e-26
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Frame = +2
Query: 29 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 202
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 203 RKQALKVHRKNRFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCAINYQGLDNXXXX 379
+++ KVH KNRF+D EWI+ + G S EF F EVPV+AVDA C INY+GLDN
Sbjct: 61 QREMYKVHEKNRFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNLRTS 120
Query: 380 XXXXXXXXXRCP 415
CP
Sbjct: 121 AGWTSRTSLPCP 132
Score = 52.4 bits (124), Expect = 7e-07
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +3
Query: 546 GWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 656
GW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 122 GWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 158
>ref|NP_001161341.1| ATP synthase subunit s-like protein isoform 3 [Homo sapiens].
Length = 185
Score = 102 bits (254), Expect = 6e-22
Identities = 66/159 (41%), Positives = 81/159 (50%), Gaps = 30/159 (18%)
Frame = +2
Query: 29 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 202
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 203 RKQALKVHRKNR---------------------------FQDNEWIQSGR-GLSSLEFRK 298
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 299 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCP 415
F EVPV+AVDA C INY+GLDN CP
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLRTSAGWTSRTSLPCP 159
Score = 52.4 bits (124), Expect = 7e-07
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +3
Query: 546 GWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 656
GW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 149 GWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 185
>ref|NP_001161340.1| ATP synthase subunit s-like protein isoform 2 [Homo sapiens].
Length = 191
Score = 97.8 bits (242), Expect = 1e-20
Identities = 58/144 (40%), Positives = 73/144 (50%), Gaps = 28/144 (19%)
Frame = +2
Query: 68 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNR--- 238
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNR
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 239 ------------------------FQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 343
F+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 344 INYQGLDNXXXXXXXXXXXXXRCP 415
INY+GLDN CP
Sbjct: 142 INYEGLDNLRTSAGWTSRTSLPCP 165
Score = 52.4 bits (124), Expect = 7e-07
Identities = 22/37 (59%), Positives = 23/37 (62%)
Frame = +3
Query: 546 GWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 656
GW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 155 GWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 191
>ref|NP_001003803.1| ATP synthase subunit s, mitochondrial isoform a precursor [Homo
sapiens].
Length = 215
Score = 62.4 bits (150), Expect = 7e-10
Identities = 42/155 (27%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 AVREYLLRKQAL-KVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 358
A E+LLR A+ + H + R+Q + + L + +QA+DA+ I G
Sbjct: 65 AASEWLLRCGAMVRYHGQERWQ--------KDYNHLPTGPLDKYKIQAIDATDSCIMSIG 116
Query: 359 LDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHH 529
D+ +C +++D CL RL QL + ++ E+ + C ++++G+ L H
Sbjct: 117 FDHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRH 176
Query: 530 LQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 634
L+NL+ L +SDLP V + + LP+ E++
Sbjct: 177 LRNLKYLLLSDLPGVREKENLVQAFKTALPSLELK 211
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,253,934
Number of extensions: 1299515
Number of successful extensions: 6281
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6224
Number of HSP's successfully gapped: 10
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001054
(1063 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079780.2| ATP synthase subunit s-like protein [Mus muscul... 246 2e-65
Alignment gi|NP_080812.1| ATP synthase subunit s, mitochondrial precursor... 66 5e-11
>ref|NP_079780.2| ATP synthase subunit s-like protein [Mus musculus].
Length = 257
Score = 246 bits (628), Expect = 2e-65
Identities = 137/244 (56%), Positives = 160/244 (65%), Gaps = 31/244 (12%)
Frame = +2
Query: 50 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 223
LH AR N I +S V P+ S+ K RTLLQFL+DHF D++ +REYLL+KQ KV
Sbjct: 7 LHLGAREWNGRARRIHGMSELVTPDSSREKKRTLLQFLSDHFQDIQTLREYLLQKQISKV 66
Query: 224 HRKNR---------------------------FQDNE-WIQ-SGRGLSSLEFRKFREVPV 316
+R+NR FQD E WI+ + R E +KF+ VPV
Sbjct: 67 NRENRSFTNIQEKYGPYVAGAVFILKQGGAVKFQDKEEWIRPNNRSHFLAEIQKFQNVPV 126
Query: 317 QAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPR 496
+AVDASGCAINYQGL N RCP++DDWCL RL+ LA SLQELSLAGCPR
Sbjct: 127 EAVDASGCAINYQGLSNLLPLKELRSLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPR 186
Query: 497 VSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEE 676
+SERGLACLHHLQNLRRLDISDLPAVS P LTQILVEEMLP+CEV G+DWAQ LKL ++
Sbjct: 187 ISERGLACLHHLQNLRRLDISDLPAVSHPGLTQILVEEMLPHCEVLGADWAQNLKLEPDK 246
Query: 677 QSRD 688
Q D
Sbjct: 247 QPPD 250
>ref|NP_080812.1| ATP synthase subunit s, mitochondrial precursor [Mus musculus].
Length = 200
Score = 65.9 bits (159), Expect = 5e-11
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 AVREYLLRKQALKVHRKNRFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 358
A E+LLR A K R+ ++ W+ L +++ +QA+DA+ I G
Sbjct: 50 AASEWLLRCGA-----KVRYCGHQKWLHDYNTLPGSSIDRYK---IQAIDATDSCIMDIG 101
Query: 359 LDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHH 529
LD+ +C +++D CL RL QL + SL EL + C V++ G+ L H
Sbjct: 102 LDHMVGLEHVEKITLCKCHYIEDNCLQRLSQLENLRKSLLELEIIACGNVTDNGVIALRH 161
Query: 530 LQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 634
+NL+ L +SDLP V + + + LP+ E++
Sbjct: 162 FRNLKYLFLSDLPGVKDKEYLAQVFKTALPSLELK 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,339,606
Number of extensions: 1064933
Number of successful extensions: 5377
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5315
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001054
(1063 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127203.1| PREDICTED: ATP synthase subunit s-like prote... 359 2e-99
Alignment gi|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochond... 70 2e-12
>ref|XP_003127203.1| PREDICTED: ATP synthase subunit s-like protein-like [Sus scrofa].
Length = 232
Score = 359 bits (921), Expect = 2e-99
Identities = 187/227 (82%), Positives = 187/227 (82%), Gaps = 27/227 (11%)
Frame = +2
Query: 29 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 208
MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK
Sbjct: 1 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 60
Query: 209 QALKVHRKNR---------------------------FQDNEWIQSGRGLSSLEFRKFRE 307
QALKVHRKNR FQDNEWIQSGRGLSSLEFRKFRE
Sbjct: 61 QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 120
Query: 308 VPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAG 487
VPVQAVDASGCAINYQGLDN RCPHVDDWCLGRLHQLADSLQELSLAG
Sbjct: 121 VPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAG 180
Query: 488 CPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCE 628
CPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCE
Sbjct: 181 CPRVSERGLACLHHLQNLRRLDISDLPAVSSPDLTQILVEEMLPNCE 227
>ref|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochondrial-like [Sus scrofa].
Length = 247
Score = 70.1 bits (170), Expect = 2e-12
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Frame = +2
Query: 182 AVREYLLRKQAL-KVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 358
A E+LLR A+ + H + R+Q + + L + +QA+DA+ I G
Sbjct: 97 AASEWLLRCGAMVRYHGQERWQ--------KDYNHLPTGPLDKYKIQAIDATDSCIMSIG 148
Query: 359 LDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHH 529
D+ +C +++D+CL RL Q+ + S+ E+ + C ++++G+ LHH
Sbjct: 149 FDHMEGLQYVEKIRFCKCHYIEDYCLERLSQIENLQKSMLEMEIISCGNITDKGIIALHH 208
Query: 530 LQNLRRLDISDLPAVSSPDLTQILVEEMLPNCEVR 634
L+NL+ L +SDLP V + + LP+ E++
Sbjct: 209 LRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,369,265
Number of extensions: 833047
Number of successful extensions: 4111
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001054
(1063 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 938 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 938 bits (473), Expect = 0.0
Identities = 500/505 (99%), Gaps = 3/505 (0%)
Strand = Plus / Plus
Query: 535 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227790 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 45227849
Query: 595 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227850 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 45227909
Query: 655 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227910 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 45227969
Query: 715 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227970 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 45228029
Query: 775 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228030 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 45228089
Query: 835 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228090 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 45228149
Query: 895 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228150 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 45228209
Query: 955 tgtcaggcaacttctcttaacttgtgagatt-acccccctgggtgtgctgccttttccgt 1013
||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |
Sbjct: 45228210 tgtcaggcaacttctcttaacttgtgagattaacccacctgagtgtgctgccttttcc-t 45228268
Query: 1014 gctagg-ggtgctacctgcattgtt 1037
|||||| ||||||||||||||||||
Sbjct: 45228269 gctaggtggtgctacctgcattgtt 45228293
Score = 938 bits (473), Expect = 0.0
Identities = 500/505 (99%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 535 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297596 gaacctccgcaggctggatatctccgaccttcctgctgtgtccagtccggacctcactca 45297537
Query: 595 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297536 gattttggtggaggagatgctgcccaactgtgaggttcgggggtctgactgggcccaggg 45297477
Query: 655 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297476 cctcaagttggggctggaggagcagtcccgagacccagccagcagcccggtccctgccta 45297417
Query: 715 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297416 gcctcagccccctctcagcaggctgacagctacttgtggcctccaccgacgttcactcag 45297357
Query: 775 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297356 ccgaagggttgggctgggatgaggggcactggcaggtctataccctgggctgacgttcac 45297297
Query: 835 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297296 aggctgtccacacactcctttctcagttccagggacctccttctcctgcctcctcaggtc 45297237
Query: 895 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297236 tagggcttctggctacaagtagctctcccttgtggtttccccacgccacgcccgcctctg 45297177
Query: 955 tgtcaggcaacttctcttaacttgtgagatt-acccccctgggtgtgctgccttttccgt 1013
||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |
Sbjct: 45297176 tgtcaggcaacttctcttaacttgtgagattaacccacctgagtgtgctgccttttcc-t 45297118
Query: 1014 gctagg-ggtgctacctgcattgtt 1037
|||||| ||||||||||||||||||
Sbjct: 45297117 gctaggtggtgctacctgcattgtt 45297093
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 46 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224724 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45224783
Query: 106 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224784 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45224843
Query: 166 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224844 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45224903
Query: 226 ccgaaaaaaccggt 239
||||||||||||||
Sbjct: 45224904 ccgaaaaaaccggt 45224917
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 46 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300663 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45300604
Query: 106 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300603 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45300544
Query: 166 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300543 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45300484
Query: 226 ccgaaaaaaccggt 239
||||||||||||||
Sbjct: 45300483 ccgaaaaaaccggt 45300470
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 372 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227472 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45227531
Query: 432 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227532 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45227591
Query: 492 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 535
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227592 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 45227635
Score = 325 bits (164), Expect = 3e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 372 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297914 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45297855
Query: 432 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297854 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45297795
Query: 492 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 535
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297794 cccgagtctctgaacgaggcctagcctgcctccaccacctccag 45297751
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 237 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227249 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 45227308
Query: 297 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227309 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 45227368
Query: 357 gcctggacaacctct 371
|||||||||||||||
Sbjct: 45227369 gcctggacaacctct 45227383
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 237 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298137 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 45298078
Query: 297 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298077 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 45298018
Query: 357 gcctggacaacctct 371
|||||||||||||||
Sbjct: 45298017 gcctggacaacctct 45298003
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 4 cttccggttgcttaattccagcaagatggcggcgtccagggcg 46
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45223440 cttccggttgcttaattccagcaagatggcggcgtccagggcg 45223482
Score = 85.7 bits (43), Expect = 5e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 4 cttccggttgcttaattccagcaagatggcggcgtccagggcg 46
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45301949 cttccggttgcttaattccagcaagatggcggcgtccagggcg 45301907
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,985,652
Number of extensions: 171
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 10
Length of query: 1063
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1042
Effective length of database: 2,808,413,156
Effective search space: 2926366508552
Effective search space used: 2926366508552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)