Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001058
(1684 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776603.1| succinate dehydrogenase [ubiquinone] flavoprote... 872 0.0
>ref|NP_776603.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor [Bos taurus].
Length = 665
Score = 872 bits (2253), Expect(2) = 0.0
Identities = 441/513 (85%), Positives = 450/513 (87%), Gaps = 8/513 (1%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGV AVS T + AA G RSFHFTVDGNKRSSAKVSDAIS QYPVVD
Sbjct: 1 MSGVAAVSRLWRARRLALTCTKWSAAWQTGTRSFHFTVDGNKRSSAKVSDAISAQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 596
RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK
Sbjct: 121 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 180
Query: 597 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 776
FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME+GECRGVIALCI
Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMESGECRGVIALCI 240
Query: 777 ED-------GSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEF 935
E+ G H R R+ YGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEF
Sbjct: 241 EERVHPPHQGQEHCHRHRS-------YGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEF 293
Query: 936 VQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIR 1115
VQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIR
Sbjct: 294 VQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIR 353
Query: 1116 EGRGCGPEKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGG 1295
EGRGCGPEKDHVYLQLHHLPP QLA+RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGG
Sbjct: 354 EGRGCGPEKDHVYLQLHHLPPAQLAMRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGG 413
Query: 1296 IPTNYKGQVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIA 1475
IPTNYKGQVLRHVNGQDQ VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIA
Sbjct: 414 IPTNYKGQVLRHVNGQDQGVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIA 473
Query: 1476 ESCRARE*VPXIKPNAGEESVXDL*QLRFANGT 1574
ESCR + VP IKPNAGEESV +L +LRFANG+
Sbjct: 474 ESCRPGDKVPSIKPNAGEESVMNLDKLRFANGS 506
Score = 62.0 bits (149), Expect(2) = 0.0
Identities = 31/38 (81%), Positives = 34/38 (89%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
+IRTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI L
Sbjct: 506 SIRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISSL 543
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 69,893,957
Number of extensions: 2130528
Number of successful extensions: 9108
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9076
Number of HSP's successfully gapped: 2
Length of query: 561
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 454
Effective length of database: 14,140,958
Effective search space: 6419994932
Effective search space used: 6419994932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001058
(1684 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535807.2| PREDICTED: similar to Succinate dehydrogenase [... 928 0.0
Alignment gi|XP_856901.1| PREDICTED: similar to Succinate dehydrogenase [... 917 0.0
Alignment gi|XP_856937.1| PREDICTED: similar to Succinate dehydrogenase [... 911 0.0
Alignment gi|XP_856853.1| PREDICTED: similar to Succinate dehydrogenase [... 892 0.0
Alignment gi|XP_856815.1| PREDICTED: similar to Succinate dehydrogenase [... 819 0.0
Alignment gi|XP_856776.1| PREDICTED: similar to Succinate dehydrogenase [... 456 e-140
>ref|XP_535807.2| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial precursor (Fp)
(Flavoprotein subunit of complex II) isoform 1 [Canis
familiaris].
Length = 665
Score = 928 bits (2398), Expect(2) = 0.0
Identities = 457/506 (90%), Positives = 468/506 (92%), Gaps = 1/506 (0%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGVRAVS T AQ PAA G RSFHFT+DGNKRSSAKVSD+ISTQYPVVD
Sbjct: 1 MSGVRAVSRLLGARRLALTRAQWPAAWQTGTRSFHFTIDGNKRSSAKVSDSISTQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 596
RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDG+IYQRAFGGQSLK
Sbjct: 121 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLK 180
Query: 597 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 776
FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI
Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 240
Query: 777 EDGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 956
EDGSIHRIRA+NTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG
Sbjct: 241 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 300
Query: 957 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 1136
IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP
Sbjct: 301 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 360
Query: 1137 EKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 1316
EKDHVYLQLHHLPPEQLA+RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG
Sbjct: 361 EKDHVYLQLHHLPPEQLAIRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 420
Query: 1317 QVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRARE 1496
QVLRHVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR +
Sbjct: 421 QVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGD 480
Query: 1497 *VPXIKPNAGEESVXDL*QLRFANGT 1574
+P IKPNAGEESV +L +LRFANG+
Sbjct: 481 KIPPIKPNAGEESVMNLDKLRFANGS 506
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
++RTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI +L
Sbjct: 506 SVRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISQL 543
>ref|XP_856901.1| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial precursor (Fp)
(Flavoprotein subunit of complex II) isoform 5 [Canis
familiaris].
Length = 672
Score = 917 bits (2370), Expect(2) = 0.0
Identities = 457/514 (88%), Positives = 468/514 (91%), Gaps = 9/514 (1%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGVRAVS T AQ PAA G RSFHFT+DGNKRSSAKVSD+ISTQYPVVD
Sbjct: 1 MSGVRAVSRLLGARRLALTRAQWPAAWQTGTRSFHFTIDGNKRSSAKVSDSISTQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 596
RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDG+IYQRAFGGQSLK
Sbjct: 121 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLK 180
Query: 597 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 776
FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI
Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 240
Query: 777 EDGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 956
EDGSIHRIRA+NTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG
Sbjct: 241 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 300
Query: 957 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 1136
IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP
Sbjct: 301 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 360
Query: 1137 EKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 1316
EKDHVYLQLHHLPPEQLA+RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG
Sbjct: 361 EKDHVYLQLHHLPPEQLAIRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 420
Query: 1317 --------QVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI 1472
QVLRHVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI
Sbjct: 421 QVTKPRPFQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI 480
Query: 1473 AESCRARE*VPXIKPNAGEESVXDL*QLRFANGT 1574
AESCR + +P IKPNAGEESV +L +LRFANG+
Sbjct: 481 AESCRPDK-IPPIKPNAGEESVMNLDKLRFANGS 513
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
++RTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI +L
Sbjct: 513 SVRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISQL 550
>ref|XP_856937.1| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial precursor (Fp)
(Flavoprotein subunit of complex II) isoform 6 [Canis
familiaris].
Length = 666
Score = 911 bits (2354), Expect(2) = 0.0
Identities = 452/507 (89%), Positives = 464/507 (91%), Gaps = 2/507 (0%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGVRAVS T AQ PAA G RSFHFT+DGNKRSSAKVSD+ISTQYPVVD
Sbjct: 1 MSGVRAVSRLLGARRLALTRAQWPAAWQTGTRSFHFTIDGNKRSSAKVSDSISTQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 596
RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDG+IYQRAFGGQSLK
Sbjct: 121 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLK 180
Query: 597 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 776
FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI
Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 240
Query: 777 EDGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 956
EDGSIHRIRA+NTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG
Sbjct: 241 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 300
Query: 957 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 1136
IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP
Sbjct: 301 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 360
Query: 1137 EKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 1316
EKDHVYLQLHHLPPEQLA+RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG
Sbjct: 361 EKDHVYLQLHHLPPEQLAIRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 420
Query: 1317 QVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESC-RAR 1493
QVLRHVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACAL I S +
Sbjct: 421 QVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALIIMFSLEKEG 480
Query: 1494 E*VPXIKPNAGEESVXDL*QLRFANGT 1574
+ +P IKPNAGEESV +L +LRFANG+
Sbjct: 481 DKIPPIKPNAGEESVMNLDKLRFANGS 507
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
++RTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI +L
Sbjct: 507 SVRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISQL 544
>ref|XP_856853.1| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial precursor (Fp)
(Flavoprotein subunit of complex II) isoform 4 [Canis
familiaris].
Length = 653
Score = 892 bits (2305), Expect(2) = 0.0
Identities = 445/506 (87%), Positives = 456/506 (90%), Gaps = 1/506 (0%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGVRAVS T AQ PAA G RSFHFT+DGNKRSSAKVSD+ISTQYPVVD
Sbjct: 1 MSGVRAVSRLLGARRLALTRAQWPAAWQTGTRSFHFTIDGNKRSSAKVSDSISTQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 596
RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDG+IYQRAFGGQSLK
Sbjct: 121 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLK 180
Query: 597 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 776
FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI
Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 240
Query: 777 EDGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 956
EDGSIHRIRA+NTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG
Sbjct: 241 EDGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTG 300
Query: 957 IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 1136
IYGA GILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP
Sbjct: 301 IYGA------------GILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGP 348
Query: 1137 EKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 1316
EKDHVYLQLHHLPPEQLA+RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG
Sbjct: 349 EKDHVYLQLHHLPPEQLAIRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKG 408
Query: 1317 QVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRARE 1496
QVLRHVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR +
Sbjct: 409 QVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGD 468
Query: 1497 *VPXIKPNAGEESVXDL*QLRFANGT 1574
+P IKPNAGEESV +L +LRFANG+
Sbjct: 469 KIPPIKPNAGEESVMNLDKLRFANGS 494
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
++RTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI +L
Sbjct: 494 SVRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISQL 531
>ref|XP_856815.1| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial precursor (Fp)
(Flavoprotein subunit of complex II) isoform 3 [Canis
familiaris].
Length = 663
Score = 819 bits (2115), Expect(2) = 0.0
Identities = 416/508 (81%), Positives = 431/508 (84%), Gaps = 3/508 (0%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGVRAVS T AQ PAA G RSFHFT+DGNKRSSAKVSD+ISTQYPVVD
Sbjct: 1 MSGVRAVSRLLGARRLALTRAQWPAAWQTGTRSFHFTIDGNKRSSAKVSDSISTQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLK 596
RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDG+IYQRAFGGQSLK
Sbjct: 121 RWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGRIYQRAFGGQSLK 180
Query: 597 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 776
FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI
Sbjct: 181 FGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCI 240
Query: 777 EDGSIHRIRARNTVVATGGYGRTYFSCTSAHTST--GDGTAMVTRAGLPCQDLEFVQFHP 950
EDGSIHRIRA+NTVV + + T+ G A R +
Sbjct: 241 EDGSIHRIRAKNTVVMGAPTSAAHLPTPAPVTAPPWSPGQAFPARTWSSSSWV----LRQ 296
Query: 951 TGIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGC 1130
IYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGC
Sbjct: 297 LSIYGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGC 356
Query: 1131 GPEKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNY 1310
GPEKDHVYLQLHHLPPEQLA+RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNY
Sbjct: 357 GPEKDHVYLQLHHLPPEQLAIRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNY 416
Query: 1311 KGQVLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRA 1490
KGQVLRHVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR
Sbjct: 417 KGQVLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRP 476
Query: 1491 RE*VPXIKPNAGEESVXDL*QLRFANGT 1574
+ +P IKPNAGEESV +L +LRFANG+
Sbjct: 477 GDKIPPIKPNAGEESVMNLDKLRFANGS 504
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
++RTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI +L
Sbjct: 504 SVRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISQL 541
>ref|XP_856776.1| PREDICTED: similar to Succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial precursor (Fp)
(Flavoprotein subunit of complex II) isoform 2 [Canis
familiaris].
Length = 520
Score = 456 bits (1173), Expect(2) = e-140
Identities = 222/235 (94%), Positives = 229/235 (97%)
Frame = +3
Query: 870 TSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERY 1049
TSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERY
Sbjct: 127 TSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINSQGERFMERY 186
Query: 1050 APVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLAVRLPGISETAMIF 1229
APVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLA+RLPGISETAMIF
Sbjct: 187 APVAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHLPPEQLAIRLPGISETAMIF 246
Query: 1230 AGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQVVPGLYACGEAACASVHGAN 1409
AGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQ+VPGLYACGEAACASVHGAN
Sbjct: 247 AGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQIVPGLYACGEAACASVHGAN 306
Query: 1410 RLGANSLLDLVVFGRACALSIAESCRARE*VPXIKPNAGEESVXDL*QLRFANGT 1574
RLGANSLLDLVVFGRACALSIAESCR + +P IKPNAGEESV +L +LRFANG+
Sbjct: 307 RLGANSLLDLVVFGRACALSIAESCRPGDKIPPIKPNAGEESVMNLDKLRFANGS 361
Score = 62.4 bits (150), Expect(2) = e-140
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
++RTSEL L+MQKSMQSHAA+FRVGSVLQE CEKI +L
Sbjct: 361 SVRTSELRLNMQKSMQSHAAVFRVGSVLQEGCEKISQL 398
Score = 180 bits (456), Expect = 4e-45
Identities = 94/130 (72%), Positives = 96/130 (73%), Gaps = 1/130 (0%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQ-PAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVD 236
MSGVRAVS T AQ PAA G RSFHFT+DGNKRSSAKVSD+ISTQYPVVD
Sbjct: 1 MSGVRAVSRLLGARRLALTRAQWPAAWQTGTRSFHFTIDGNKRSSAKVSDSISTQYPVVD 60
Query: 237 HEFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 416
HEFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW
Sbjct: 61 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNW 120
Query: 417 RWHFYDTVKG 446
RWHFYDT G
Sbjct: 121 RWHFYDTSTG 130
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 72,625,573
Number of extensions: 2183276
Number of successful extensions: 9336
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9287
Number of HSP's successfully gapped: 13
Length of query: 561
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 453
Effective length of database: 15,274,216
Effective search space: 6919219848
Effective search space used: 6919219848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001058
(1684 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004159.2| succinate dehydrogenase [ubiquinone] flavoprote... 913 0.0
>ref|NP_004159.2| succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor [Homo sapiens].
Length = 664
Score = 913 bits (2360), Expect(2) = 0.0
Identities = 447/505 (88%), Positives = 459/505 (90%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQPAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVDH 239
MSGVR +S A P G R FHFTVDGNKR+SAKVSD+IS QYPVVDH
Sbjct: 1 MSGVRGLSRLLSARRLALAKAWPTVLQTGTRGFHFTVDGNKRASAKVSDSISAQYPVVDH 60
Query: 240 EFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 419
EFD LSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR
Sbjct: 61 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120
Query: 420 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 599
WHFYDTVKGSDWLGDQDAIHYMTEQAPA+VVELENYGMPFSRTEDGKIYQRAFGGQSLKF
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPAAVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180
Query: 600 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE 779
GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
Sbjct: 181 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE 240
Query: 780 DGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGI 959
DGSIHRIRA+NTVVATGGYGRTYFSCTSAHTSTGDGTAM+TRAGLPCQDLEFVQFHPTGI
Sbjct: 241 DGSIHRIRAKNTVVATGGYGRTYFSCTSAHTSTGDGTAMITRAGLPCQDLEFVQFHPTGI 300
Query: 960 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE 1139
YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
Sbjct: 301 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE 360
Query: 1140 KDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ 1319
KDHVYLQLHHLPPEQLA RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
Sbjct: 361 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ 420
Query: 1320 VLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRARE* 1499
VLRHVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSI ESCR +
Sbjct: 421 VLRHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIEESCRPGDK 480
Query: 1500 VPXIKPNAGEESVXDL*QLRFANGT 1574
VP IKPNAGEESV +L +LRFA+G+
Sbjct: 481 VPPIKPNAGEESVMNLDKLRFADGS 505
Score = 60.5 bits (145), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 34/38 (89%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
+IRTSEL LSMQKSMQ+HAA+FRVGSVLQE C KI +L
Sbjct: 505 SIRTSELRLSMQKSMQNHAAVFRVGSVLQEGCGKISKL 542
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 71,079,458
Number of extensions: 2119022
Number of successful extensions: 8606
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8569
Number of HSP's successfully gapped: 2
Length of query: 561
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 453
Effective length of database: 14,737,052
Effective search space: 6675884556
Effective search space used: 6675884556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001058
(1684 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075770.1| succinate dehydrogenase [ubiquinone] flavoprote... 900 0.0
>ref|NP_075770.1| succinate dehydrogenase [ubiquinone] flavoprotein subunit,
mitochondrial precursor [Mus musculus].
Length = 664
Score = 900 bits (2325), Expect(2) = 0.0
Identities = 443/505 (87%), Positives = 457/505 (90%)
Frame = +3
Query: 60 MSGVRAVSXXXXXXXXXXTWAQPAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVDH 239
M+GV AVS T A P FHF+V NK++SAKVSDAISTQYPVVDH
Sbjct: 1 MAGVGAVSRLLRGRRLALTGAWPGTLQKQTCGFHFSVGENKKASAKVSDAISTQYPVVDH 60
Query: 240 EFDXXXXXXXXXXXXXXXXLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWR 419
EFD LSEAGFNTAC+TKLFPTRSHTVAAQGGINAALGNMEEDNWR
Sbjct: 61 EFDAVVVGAGGAGLRAAFGLSEAGFNTACLTKLFPTRSHTVAAQGGINAALGNMEEDNWR 120
Query: 420 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 599
WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF
Sbjct: 121 WHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKF 180
Query: 600 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE 779
GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE
Sbjct: 181 GKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE 240
Query: 780 DGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGI 959
DGSIHRIRA+NTV+ATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGI
Sbjct: 241 DGSIHRIRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGI 300
Query: 960 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE 1139
YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE
Sbjct: 301 YGAGCLITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIREGRGCGPE 360
Query: 1140 KDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ 1319
KDHVYLQLHHLPPEQLA RLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ
Sbjct: 361 KDHVYLQLHHLPPEQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQ 420
Query: 1320 VLRHVNGQDQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRARE* 1499
VL+HVNGQDQ+VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR +
Sbjct: 421 VLKHVNGQDQIVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGDK 480
Query: 1500 VPXIKPNAGEESVXDL*QLRFANGT 1574
VP IK NAGEESV +L +LRFA+G+
Sbjct: 481 VPSIKANAGEESVMNLDKLRFADGS 505
Score = 61.6 bits (148), Expect(2) = 0.0
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 1571 NIRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
+IRTSEL L+MQKSMQ+HAA+FRVGSVLQE CEKI +L
Sbjct: 505 SIRTSELRLNMQKSMQNHAAVFRVGSVLQEGCEKISQL 542
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,858,625
Number of extensions: 1752014
Number of successful extensions: 6819
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6784
Number of HSP's successfully gapped: 2
Length of query: 561
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 454
Effective length of database: 12,403,707
Effective search space: 5631282978
Effective search space used: 5631282978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001058
(1684 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362188.1| PREDICTED: LOW QUALITY PROTEIN: succinate de... 727 0.0
>ref|XP_003362188.1| PREDICTED: LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone]
flavoprotein subunit, mitochondrial [Sus scrofa].
Length = 695
Score = 727 bits (1876), Expect(2) = 0.0
Identities = 379/494 (76%), Positives = 392/494 (79%), Gaps = 10/494 (2%)
Frame = +3
Query: 123 QPAASPIGARSFHFTVDGNKRSSAKVSDAISTQYPVVDHEFDXXXXXXXXXXXXXXXXLS 302
QPAASPIGARSFHFTVDGNKRSSAKVSDAISTQ+PVVDHEFD LS
Sbjct: 76 QPAASPIGARSFHFTVDGNKRSSAKVSDAISTQHPVVDHEFDAVVVGAGGAGLRAAFGLS 135
Query: 303 EAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHY 482
EAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHY
Sbjct: 136 EAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEEDNWRWHFYDTVKGSDWLGDQDAIHY 195
Query: 483 MTEQAPASVVELENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLL 662
A V +LENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLL
Sbjct: 196 XXXXXXALVSQLENYGMPFSRTEDGKIYQRAFGGQSLKFGKGGQAHRCCCVADRTGHSLL 255
Query: 663 HTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRIRARNTVVATGGYGR 842
HTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRI +R +++ GYGR
Sbjct: 256 HTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGSIHRITSRLAHLSSRGYGR 315
Query: 843 TYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGGILINS 1022
TYFSCTSAHTSTGDGTAMVTR FHPTG + G+ +L S
Sbjct: 316 TYFSCTSAHTSTGDGTAMVTR------------FHPTGRQIMRFVADIPSLGDSALLCLS 363
Query: 1023 Q---------GERFMERYAPV-AKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHL 1172
GE + V AKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHL
Sbjct: 364 PWDFLLLPRGGEATLTPLGLVLAKDLASRDVVSRSMTLEIREGRGCGPEKDHVYLQLHHL 423
Query: 1173 PPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQV 1352
PPEQL EPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQV
Sbjct: 424 PPEQL---------------------EPIPVLPTVHYNMGGIPTNYKGQVLRHVNGQDQV 462
Query: 1353 VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRARE*VPXIKPNAGEE 1532
VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCR + VP IKPNAGEE
Sbjct: 463 VPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALSIAESCRPGDKVPSIKPNAGEE 522
Query: 1533 SVXDL*QLRFANGT 1574
SV +L +LRFANGT
Sbjct: 523 SVMNLDKLRFANGT 536
Score = 67.4 bits (163), Expect(2) = 0.0
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = +2
Query: 1574 IRTSELXLSMQKSMQSHAALFRVGSVLQESCEKILRL 1684
IRTSEL LSMQKSMQSHAA+FRVGSVLQE CEKILRL
Sbjct: 537 IRTSELRLSMQKSMQSHAAVFRVGSVLQEGCEKILRL 573
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 45,147,674
Number of extensions: 1376335
Number of successful extensions: 5795
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5773
Number of HSP's successfully gapped: 2
Length of query: 561
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 457
Effective length of database: 8,754,644
Effective search space: 4000872308
Effective search space used: 4000872308
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001058
(1684 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 339 3e-90
>gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffold749
Length = 51762
Score = 339 bits (171), Expect = 3e-90
Identities = 171/171 (100%)
Strand = Plus / Minus
Query: 1317 caggttctgaggcacgtcaacggccaggaccaggtggtgcctgggctgtacgcctgcgga 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32938 caggttctgaggcacgtcaacggccaggaccaggtggtgcctgggctgtacgcctgcgga 32879
Query: 1377 gaggctgcctgtgcctcggtgcacggtgccaaccgcctgggggcaaactcgctcctggac 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32878 gaggctgcctgtgcctcggtgcacggtgccaaccgcctgggggcaaactcgctcctggac 32819
Query: 1437 ctcgttgtcttcggccgggcatgtgccctgagcatcgcggagtcctgcagg 1487
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32818 ctcgttgtcttcggccgggcatgtgccctgagcatcgcggagtcctgcagg 32768
Score = 313 bits (158), Expect = 2e-82
Identities = 167/169 (98%), Gaps = 2/169 (1%)
Strand = Plus / Minus
Query: 514 agctagagaattacggcatgccgttcagcagaaccgaagatggcaagatctaccagcgcg 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38962 agctagagaattacggcatgccgttcagcagaaccgaagatggcaagatctaccagcgcg 38903
Query: 574 cctttggcggacagagcctcaagttcgggaagggcgggcaggcccatc--ggtgctgctg 631
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 38902 cctttggcggacagagcctcaagttcgggaagggcgggcaggcccatcgnggtgctgctg 38843
Query: 632 cgtggccgaccgcactggccactcactgctgcacacgttgtacggaagg 680
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38842 cgtggccgaccgcactggccactcactgctgcacacgttgtacggaagg 38794
Score = 309 bits (156), Expect = 3e-81
Identities = 162/164 (98%)
Strand = Plus / Minus
Query: 209 gatttctacgcagtacccagtagtggatcatgaatttgacgcagtggtggttggtgccgg 268
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40200 gatttctacacagcacccagtagtggatcatgaatttgacgcagtggtggttggtgccgg 40141
Query: 269 aggggcaggcctgcgagctgcgtttggtctctctgaggccgggtttaacacagcctgcgt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40140 aggggcaggcctgcgagctgcgtttggtctctctgaggccgggtttaacacagcctgcgt 40081
Query: 329 tacgaagctctttcccaccagatcacacactgttgcagcccagg 372
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40080 tacgaagctctttcccaccagatcacacactgttgcagcccagg 40037
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 680 gtctctgcggtacgataccagctattttgtggagtattttgccttggatctcctgatgga 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37742 gtctctgcggtacgataccagctattttgtggagtattttgccttggatctcctgatgga 37683
Query: 740 aaacggggagtgtcgtggagtcatcgccctgtgcatcgaagacgggtccatccaccgcat 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37682 aaacggggagtgtcgtggagtcatcgccctgtgcatcgaagacgggtccatccaccgcat 37623
Query: 800 ca 801
||
Sbjct: 37622 ca 37621
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 372 ggaggcatcaatgctgccctggggaacatggaggaggacaactggaggtggcatttctac 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39257 ggaggcatcaatgctgccctggggaacatggaggaggacaactggaggtggcatttctac 39198
Query: 432 gacactgtgaagggctccgactggctgggggaccaggacgccatccactacat 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39197 gacactgtgaagggctccgactggctgggggaccaggacgccatccactacat 39145
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 122 gcagccagcagcatcacccataggagcccgcagctttcacttcactgttgatggcaataa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41851 gcagccagcagcatcacccataggagcccgcagctttcacttcactgttgatggcaataa 41792
Query: 182 gaggtcgtcggccaaagtttcagatgcg 209
||||||||||||||||||||||||||||
Sbjct: 41791 gaggtcgtcggccaaagtttcagatgcg 41764
Score = 161 bits (81), Expect = 2e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 829 gaggctacggccgcacgtacttcagctgcacgtccgcccacaccagcaccggagacggca 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36450 gaggctacggccgcacgtacttcagctgcacgtccgcccacaccagcaccggagacggca 36391
Query: 889 ccgccatggtcaccagggcgg 909
|||||||||||||||||||||
Sbjct: 36390 ccgccatggtcaccagggcgg 36370
Score = 149 bits (75), Expect = 6e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 1247 caaggagccgatccccgtgctccccaccgtgcactataacatgggcggcatccccaccaa 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33783 caaggagccgatccccgtgctccccaccgtgcactataacatgggcggcatccccaccaa 33724
Query: 1307 ctacaaggggcaggt 1321
|||||||||||||||
Sbjct: 33723 ctacaaggggcaggt 33709
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 1053 cccgtcgcaaaggacctggcatccagggacgtcgtgtcccggtccatgactctggaaatc 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34882 cccgtcgcaaaggacctggcatccagggacgtcgtgtcccggtccatgactctggaaatc 34823
Query: 1113 cgggaaggaag 1123
|||||||||||
Sbjct: 34822 cgggaaggaag 34812
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 1122 agaggctgcggccccgagaaggaccatgtgtacctgcagctgcaccacctcccccctgag 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33952 agaggctgcggccccgagaaggaccatgtgtacctgcagctgcaccacctcccccctgag 33893
Query: 1182 cagctggcg 1190
|||||||||
Sbjct: 33892 cagctggcg 33884
Score = 129 bits (65), Expect = 5e-27
Identities = 74/77 (96%)
Strand = Plus / Minus
Query: 1608 agtcgatgcaaagccacgccgcattgttccgcgtgggcagcgtgttacaggaaagctgtg 1667
|||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 30479 agtcgatgcagagccacgccgcagtgttccgcgtgggcagcgtgttacaggaaggctgtg 30420
Query: 1668 agaagatcctccggctc 1684
|||||||||||||||||
Sbjct: 30419 agaagatcctccggctc 30403
Score = 129 bits (65), Expect = 5e-27
Identities = 101/110 (91%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 1498 aagttccctncattaaaccaaatgctggggaggaatcggtcatngatctttgac-aactg 1556
||||||||| |||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 30897 aagttccctcaattaaaccaaatgctggggaggaatcggtcatgaatc-ttgacaaactg 30839
Query: 1557 agatttgcgaacggaa-cataaggacatcggagctgncgctcagcatgca 1605
|||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 30838 agatttgcgaacggaaccataaggacatcggagctgcggctcagcatgca 30789
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,905,308
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 12
Length of query: 1684
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1662
Effective length of database: 2,808,408,574
Effective search space: 4667575049988
Effective search space used: 4667575049988
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)