Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001062
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035577.1| elongation factor 1-gamma [Bos taurus]. 579 e-166
Alignment gi|XP_581858.2| PREDICTED: valyl-tRNA synthetase-like [Bos taur... 119 5e-27
>ref|NP_001035577.1| elongation factor 1-gamma [Bos taurus].
Length = 440
Score = 579 bits (1493), Expect(2) = e-166
Identities = 286/329 (86%), Positives = 290/329 (88%), Gaps = 3/329 (0%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR-- 771
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 772 -XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKY 948
PKAKDPFAHLPKSTFVLDEFKRKY
Sbjct: 241 KLKPQAERKEGKEEKKAAAPAPEEELDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKY 300
Query: 949 SNEDTLSVALPYFWEHFDKDGWSLWYSEY 1035
SNEDTLSVALPYFW+HFDKDGWSLWYSEY
Sbjct: 301 SNEDTLSVALPYFWDHFDKDGWSLWYSEY 329
Score = 25.4 bits (54), Expect(2) = e-166
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 332 PEELTQTFMSCNLIT 346
>ref|XP_581858.2| PREDICTED: valyl-tRNA synthetase-like [Bos taurus].
Length = 1252
Score = 119 bits (298), Expect = 5e-27
Identities = 79/212 (37%), Positives = 115/212 (54%), Gaps = 11/212 (5%)
Frame = +1
Query: 82 YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVP 234
+P+ + + +ALIAA+Y GA RV PP + TP FP ++P
Sbjct: 9 HPDAFPSLRALIAARYGEAGEGPGWGGAHPRVCLQPP-----PASRTP-----FPPPRLP 58
Query: 235 AFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPASTWVFPT 408
A E G G V+ + A++ + L G AA +VQ WVS+AD++++P A P
Sbjct: 59 ALEQGPGGLWVWGATAVSQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPA 118
Query: 409 LGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLE 588
LG+ + Q + A + R L L+ L+ T+L GE TLAD+ V LL ++ VL+
Sbjct: 119 LGLRS-SAQDPQAALAALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLD 177
Query: 589 PSFRQAFPNTNRWFLTCINQPQFRAVLGEVKL 684
PS R+ + N RWF+TC+ QP+FRAVLGEV L
Sbjct: 178 PSARRIWGNVTRWFITCVQQPEFRAVLGEVVL 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,950,437
Number of extensions: 1220365
Number of successful extensions: 5170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5158
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001062
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867792.1| PREDICTED: similar to Elongation factor 1-gamma... 581 e-166
Alignment gi|XP_861367.1| PREDICTED: similar to Elongation factor 1-gamma... 581 e-166
Alignment gi|XP_850257.1| PREDICTED: similar to Elongation factor 1-gamma... 581 e-166
Alignment gi|XP_853577.1| PREDICTED: similar to Elongation factor 1-gamma... 581 e-166
Alignment gi|XP_867760.1| PREDICTED: similar to Elongation factor 1-gamma... 573 e-164
Alignment gi|XP_859367.1| PREDICTED: similar to Elongation factor 1-gamma... 573 e-164
Alignment gi|XP_849510.1| PREDICTED: similar to Elongation factor 1-gamma... 573 e-164
Alignment gi|XP_856191.1| PREDICTED: similar to Elongation factor 1-gamma... 551 e-158
Alignment gi|XP_848460.1| PREDICTED: similar to Elongation factor 1-gamma... 548 e-157
Alignment gi|XP_867777.1| PREDICTED: similar to Elongation factor 1-gamma... 537 e-153
>ref|XP_867792.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 24 [Canis familiaris].
Length = 443
Score = 581 bits (1497), Expect(2) = e-166
Identities = 283/326 (86%), Positives = 289/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-166
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|XP_861367.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 12 [Canis familiaris].
Length = 437
Score = 581 bits (1497), Expect(2) = e-166
Identities = 283/326 (86%), Positives = 289/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-166
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|XP_850257.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 1 [Canis familiaris].
Length = 437
Score = 581 bits (1497), Expect(2) = e-166
Identities = 283/326 (86%), Positives = 289/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-166
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|XP_853577.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 1 [Canis familiaris].
Length = 437
Score = 581 bits (1497), Expect(2) = e-166
Identities = 283/326 (86%), Positives = 289/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLTVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-166
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|XP_867760.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 20 [Canis familiaris].
Length = 445
Score = 573 bits (1478), Expect(2) = e-164
Identities = 283/334 (84%), Positives = 289/334 (86%), Gaps = 8/334 (2%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQ--------ATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLY 573
MH+NKQ ATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLY
Sbjct: 121 MHHNKQKMGMSQNFATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLY 180
Query: 574 KQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPR 753
KQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPR
Sbjct: 181 KQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPR 240
Query: 754 KEKGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDE 933
KEKGSR PKAKDPFAHLPKSTFVLDE
Sbjct: 241 KEKGSREEKQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDE 300
Query: 934 FKRKYSNEDTLSVALPYFWEHFDKDGWSLWYSEY 1035
FKRKYSNEDTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 FKRKYSNEDTLTVALPYFWEHFDKDGWSLWYAEY 334
Score = 25.4 bits (54), Expect(2) = e-164
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 337 PEELTQTFMSCNLIT 351
>ref|XP_859367.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 13 [Canis familiaris].
Length = 437
Score = 573 bits (1476), Expect(2) = e-164
Identities = 279/326 (85%), Positives = 287/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFES+AIAYYV+NEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESSAIAYYVNNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVG+RVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGKRVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEK SR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKDSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKLQAEWKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTL VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLPVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-164
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|XP_849510.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 2 [Canis familiaris].
Length = 437
Score = 573 bits (1476), Expect(2) = e-164
Identities = 279/326 (85%), Positives = 287/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFES+AIAYYV+NEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESSAIAYYVNNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVG+RVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGKRVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEK SR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKDSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKLQAEWKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTL VALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLPVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-164
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|XP_856191.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 14 [Canis familiaris].
Length = 430
Score = 551 bits (1420), Expect(2) = e-158
Identities = 272/332 (81%), Positives = 280/332 (84%)
Frame = +1
Query: 40 FLCGITMAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFP 219
FLCGIT AAG LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFP
Sbjct: 4 FLCGITTAAGPLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFP 63
Query: 220 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWV 399
AGKVPAFEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWV
Sbjct: 64 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWV 123
Query: 400 FPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQ 579
PTLGIMH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQ
Sbjct: 124 LPTLGIMHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQ 183
Query: 580 VLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKE 759
VLEPSFRQAFPNTNRWFLTCINQPQF AVLGEVKLCEKM QFDAKKFAE + K RKE
Sbjct: 184 VLEPSFRQAFPNTNRWFLTCINQPQFWAVLGEVKLCEKMVQFDAKKFAEKKQKPQAERKE 243
Query: 760 KGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFK 939
+ PKAKDPFAH PKSTFVLDEFK
Sbjct: 244 E----------------KKAAAPAPEEEMDACEQALAAEPKAKDPFAHPPKSTFVLDEFK 287
Query: 940 RKYSNEDTLSVALPYFWEHFDKDGWSLWYSEY 1035
RKYSNEDTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 288 RKYSNEDTLTVALPYFWEHFDKDGWSLWYAEY 319
Score = 25.4 bits (54), Expect(2) = e-158
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 322 PEELTQTFMSCNLIT 336
>ref|XP_848460.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 3 [Canis familiaris].
Length = 433
Score = 548 bits (1413), Expect(2) = e-157
Identities = 270/332 (81%), Positives = 280/332 (84%)
Frame = +1
Query: 40 FLCGITMAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFP 219
FLCGIT AAG LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFP
Sbjct: 4 FLCGITTAAGPLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFP 63
Query: 220 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWV 399
AGKVPAFEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWV
Sbjct: 64 AGKVPAFEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWV 123
Query: 400 FPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQ 579
PTLGIMH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQ
Sbjct: 124 LPTLGIMHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQ 183
Query: 580 VLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKE 759
VLEPSFRQAFPNTNRWFLTCINQPQF AVLGEVKLCEKM QFDAKKF S+ +K P+ E
Sbjct: 184 VLEPSFRQAFPNTNRWFLTCINQPQFWAVLGEVKLCEKMVQFDAKKFKGSREEKQKPQAE 243
Query: 760 KGSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFK 939
+ PKAKDPFAH PKSTFVLDEFK
Sbjct: 244 RKEEKKAAAPAPEEEMDACEQALAAE-------------PKAKDPFAHPPKSTFVLDEFK 290
Query: 940 RKYSNEDTLSVALPYFWEHFDKDGWSLWYSEY 1035
RKYSNEDTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 291 RKYSNEDTLTVALPYFWEHFDKDGWSLWYAEY 322
Score = 25.4 bits (54), Expect(2) = e-157
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 325 PEELTQTFMSCNLIT 339
>ref|XP_867777.1| PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B
gamma) isoform 22 [Canis familiaris].
Length = 405
Score = 537 bits (1384), Expect(2) = e-153
Identities = 267/327 (81%), Positives = 277/327 (84%), Gaps = 1/327 (0%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRG+TPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGNTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFD-AKKFAESQPKKDTPRKEKGSRX 774
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFD KK A P+++ E+
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDEEKKAAAPAPEEEMDECEQA--- 237
Query: 775 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSN 954
PKAKDPFAHLPKSTFVLDEFKRKYSN
Sbjct: 238 ------------------------------LAAEPKAKDPFAHLPKSTFVLDEFKRKYSN 267
Query: 955 EDTLSVALPYFWEHFDKDGWSLWYSEY 1035
EDTL+VALPYFWEHFDKDGWSLWY+EY
Sbjct: 268 EDTLTVALPYFWEHFDKDGWSLWYAEY 294
Score = 25.4 bits (54), Expect(2) = e-153
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 297 PEELTQTFMSCNLIT 311
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,784,519
Number of extensions: 1261215
Number of successful extensions: 5763
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 5701
Number of HSP's successfully gapped: 219
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001062
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001395.1| elongation factor 1-gamma [Homo sapiens]. 582 e-167
Alignment gi|NP_006286.1| valyl-tRNA synthetase [Homo sapiens]. 120 3e-27
>ref|NP_001395.1| elongation factor 1-gamma [Homo sapiens].
Length = 437
Score = 582 bits (1501), Expect(2) = e-167
Identities = 285/326 (87%), Positives = 290/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EVRR+LGLLDA+LKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAE+QPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAETQPKKDTPRKEKGSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTLSVALPYFWEHFDKDGWSLWYSEY
Sbjct: 301 DTLSVALPYFWEHFDKDGWSLWYSEY 326
Score = 25.4 bits (54), Expect(2) = e-167
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|NP_006286.1| valyl-tRNA synthetase [Homo sapiens].
Length = 1264
Score = 120 bits (300), Expect = 3e-27
Identities = 87/252 (34%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Frame = +1
Query: 70 TLYT--YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKF 216
TLY +P+ + + +ALIAA+Y GA R+ PP T+ TP F
Sbjct: 3 TLYVSPHPDAFPSLRALIAARYGEAGEGPGWGGAHPRICLQPP-----PTSRTP-----F 52
Query: 217 PAGKVPAFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPAS 390
P ++PA E G G V+ + A+A + L G AA +VQ WVS+AD++++P A
Sbjct: 53 PPPRLPALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAAC 112
Query: 391 TWVFPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWL 570
P LG+ + Q + + R L L+ L+ T+L GE TLAD+ V LL
Sbjct: 113 GATLPALGLRS-SAQDPQAVLGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLP 171
Query: 571 YKQVLEPSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAE-------- 726
++ VL+P R+ + N RWF+TC+ QP+FRAVLGEV L + E
Sbjct: 172 FRYVLDPPARRIWNNVTRWFVTCVRQPEFRAVLGEVVLYSGARPLSHQPGPEAPALPKTA 231
Query: 727 SQPKKDTPRKEK 762
+Q KK+ ++EK
Sbjct: 232 AQLKKEAKKREK 243
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,983,009
Number of extensions: 1232784
Number of successful extensions: 5108
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5101
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001062
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080283.3| elongation factor 1-gamma [Mus musculus]. 582 e-167
Alignment gi|NP_035820.3| valyl-tRNA synthetase [Mus musculus]. 114 2e-25
>ref|NP_080283.3| elongation factor 1-gamma [Mus musculus].
Length = 437
Score = 582 bits (1499), Expect(2) = e-167
Identities = 283/326 (86%), Positives = 289/326 (88%)
Frame = +1
Query: 58 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPA 237
MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTN TPEFLRKFPAGKVPA
Sbjct: 1 MAAGTLYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPA 60
Query: 238 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 417
FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI
Sbjct: 61 FEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGI 120
Query: 418 MHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 597
MH+NKQATENAK+EV+R+LGLLD HLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF
Sbjct: 121 MHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSF 180
Query: 598 RQAFPNTNRWFLTCINQPQFRAVLGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSRXX 777
RQAFPNTNRWFLTCINQPQFRA+LGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSR
Sbjct: 181 RQAFPNTNRWFLTCINQPQFRAILGEVKLCEKMAQFDAKKFAESQPKKDTPRKEKGSREE 240
Query: 778 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAKDPFAHLPKSTFVLDEFKRKYSNE 957
PKAKDPFAHLPKSTFVLDEFKRKYSNE
Sbjct: 241 KQKPQAERKEEKKAAAPAPEEEMDECEQALAAEPKAKDPFAHLPKSTFVLDEFKRKYSNE 300
Query: 958 DTLSVALPYFWEHFDKDGWSLWYSEY 1035
DTLSVALPYFWEHFDKDGWSLWY+EY
Sbjct: 301 DTLSVALPYFWEHFDKDGWSLWYAEY 326
Score = 25.4 bits (54), Expect(2) = e-167
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 1040 P*KAHQTFMSCNLIT 1084
P + QTFMSCNLIT
Sbjct: 329 PEELTQTFMSCNLIT 343
>ref|NP_035820.3| valyl-tRNA synthetase [Mus musculus].
Length = 1263
Score = 114 bits (284), Expect = 2e-25
Identities = 82/246 (33%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Frame = +1
Query: 82 YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVP 234
+P+ + + +ALIAA+Y G R+ PP ++ TP FP ++P
Sbjct: 9 HPDAFPSLRALIAARYGEAGDGPGWGGPHPRICLQPP-----PSSRTP-----FPPPRLP 58
Query: 235 AFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPASTWVFPT 408
A E G G V+ + A+A + L G AA +VQ WVS+AD++++P A P
Sbjct: 59 ALEQGPGGLWVWGAPAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPA 118
Query: 409 LGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLE 588
LG+ Q + A + + L L+ L+ T+L G+ TLAD+ V LL ++ VL+
Sbjct: 119 LGLRGPG-QDPQAALGALGKALNPLEDWLRLHTYLAGDAPTLADLAAVTALLLPFRYVLD 177
Query: 589 PSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLC--------EKMAQFDAKKFAESQPKKD 744
PS R+ + N RWF TC+ QP+FRAVLGEV L + ++ A + +Q KK+
Sbjct: 178 PSARRIWGNVTRWFNTCVRQPEFRAVLGEVALYSGARSVTQQPGSEVIAPQKTPAQLKKE 237
Query: 745 TPRKEK 762
++EK
Sbjct: 238 AKKREK 243
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,315,192
Number of extensions: 1022619
Number of successful extensions: 4253
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4241
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001062
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182307.1| valyl-tRNA synthetase [Sus scrofa]. 122 5e-28
>ref|NP_001182307.1| valyl-tRNA synthetase [Sus scrofa].
Length = 1265
Score = 122 bits (305), Expect = 5e-28
Identities = 86/246 (34%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Frame = +1
Query: 82 YPENWRAFKALIAAQYS---------GAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVP 234
+P+ + + +ALIAA+Y GA RV PP + TP FP ++P
Sbjct: 9 HPDAFPSLRALIAARYGEAGEGPGWGGAHPRVCLQPP-----PASRTP-----FPPPRLP 58
Query: 235 AFE-GDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQ-WVSFADSDIVPPASTWVFPT 408
A E G G V+ + A+A + L G AA +VQ WVS+AD++++P A P
Sbjct: 59 ALEQGPGGLWVWGATAVAQLLWPAGLGGPGGSRAAVLVQQWVSYADTELIPAACGATLPA 118
Query: 409 LGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLE 588
LG+ + Q + A + R L L+ L+ T+L GE TLAD+ V LL ++ VL+
Sbjct: 119 LGLRS-SAQDPQAALGALGRALSPLEEWLRLHTYLAGEAPTLADLAAVTALLLPFRYVLD 177
Query: 589 PSFRQAFPNTNRWFLTCINQPQFRAVLGEVKLC--------EKMAQFDAKKFAESQPKKD 744
PS R+ + N RWF+TC+ QP+FRAVLGEV L + + A +Q KK+
Sbjct: 178 PSARRIWGNVTRWFITCVQQPEFRAVLGEVVLFSGTRPASQQPGPEVSAPTKTAAQLKKE 237
Query: 745 TPRKEK 762
++EK
Sbjct: 238 AKKREK 243
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,038,815
Number of extensions: 786038
Number of successful extensions: 3322
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3316
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001062
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1372 0.0
Sscrofa_Chr02 408 e-111
Sscrofa_Chr11 64 2e-07
>Sscrofa_Chr01
|| Length = 315321322
Score = 1372 bits (692), Expect = 0.0
Identities = 961/1048 (91%), Gaps = 2/1048 (0%)
Strand = Plus / Minus
Query: 39 ttttctctgcggaatcaccatggcggccgggaccctgtacacatatcctgaaaactggag 98
|||||| ||| |||||||| ||| ||| ||||||||||||||||||||||||||||| ||
Sbjct: 93500642 ttttctttgcagaatcaccgtggtggctgggaccctgtacacatatcctgaaaactgcag 93500583
Query: 99 ggccttcaaagccctcattgccgctcagtacagcggggctcaggtccgcgtgctctccgc 158
| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 93500582 gcccttcaaagccctcattgccgctcagtacagtggggctcaggtccatgtgctctccga 93500523
Query: 159 accaccccacttccattttggccaaaccaaccacacccccgaatttctccgtaaatttcc 218
|||| ||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct: 93500522 accatcccacttacattttggccaaaccaaccacacccccaaattgctccataaatttcc 93500463
Query: 219 tgccggtaaggttccagcatttgagggtgacgatggattctgtgtgttcgagagcaatgc 278
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 93500462 tgctggtaaggttccagcatttgagggtgacggtggattctgtgtgttcgagagcaatcc 93500403
Query: 279 cattgcctactacgtgagcaacgaggagctgcggggaagtactcctgaggcagcagccca 338
|||||||| || ||||||||| |||||||| ||| ||||||| | |||||||||||||
Sbjct: 93500402 cattgcctgctgtgtgagcaacaaggagctgtgggaaagtacttccaaggcagcagccca 93500343
Query: 339 ggtggtgcagtgggtgagctttgccgatagcgacatcgtgccccccgccagtacctgggt 398
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 93500342 ggttgtgcagtgggtgagctttgccgatagcaacatcgtgcccccggccagtacctgggt 93500283
Query: 399 gttccccaccttgggcatcatgcactacaacaagcaggccacagagaatgcaaaggatga 458
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 93500282 gttccccaccttgggcatcatgcattacaacaagcaggccacagagaatgcaaaggatga 93500223
Query: 459 ggtgaggcgagttctggggctgctggatgctcacttgaagacgaggacttttctggtggg 518
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 93500222 ggtgaggtgagttctggggctgctggatgctcacttgaagacagggacttttctggtggg 93500163
Query: 519 cgaacgtgtgacgctggctgacatcacagttgtctgcaccctgttgtggctctacaaaca 578
|||||||||||| ||||| |||||||||||||||||||||| | |||||||||||||||
Sbjct: 93500162 cgaacgtgtgacactggccaacatcacagttgtctgcaccctatcgtggctctacaaaca 93500103
Query: 579 ggtcctggagccttctttccgccaggccttccccaataccaaccgctggttcctcacctg 638
|||||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct: 93500102 ggtcctggagttttctttccaccaggccttctgcaataccaaccactggttcctcacctg 93500043
Query: 639 cattaaccagccccagttccgggctgtcttgggggaggtgaagctctgtgagaagatggc 698
| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 93500042 cgttaacaagccctagttccgggctgtcttggaggaggtgaagctctgtgagaagatggc 93499983
Query: 699 ccagtttgatgctaaaaagtttgcagagagtcagcctaaaaaggacaccccacggaaaga 758
||| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 93499982 ccaatttgatgctaaaaagtttgcagagaatcagcctaaaaatgacaccccatggaaaga 93499923
Query: 759 gaaaggttctcgagaagagaagcagaagccccaggctgagcggaaagaggagaagaaggc 818
|||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||| |||||
Sbjct: 93499922 gaaaggttctggaggagaaaagcagaaaccccaggctgagcagaaagaggagaaaaaggc 93499863
Query: 819 agctgctcctgctcctgaggaggagctggacgagtgtgagcaggcgctggctgctgagcc 878
| ||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct: 93499862 aactgctcccactcctgaggaggagatggacgagtgtgagcaggcactggcttctgagcc 93499803
Query: 879 caaggccaaggatccctttgctcacctacccaagagtacctttgtgttggacgaatttaa 938
||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||
Sbjct: 93499802 caaggccaaggatccctttgcccacctgtgcaagagcacctttgtgttggacgaatttaa 93499743
Query: 939 gcgcaagtactccaacgaggacacactctctgtggcgctgccgtacttctgggagcactt 998
||||||||||||||| ||||||| |||||||||||| |||| ||||| ||||||||||||
Sbjct: 93499742 gcgcaagtactccaatgaggacatactctctgtggcactgctgtactcctgggagcactt 93499683
Query: 999 tgataaggatggctggtccttgtggtactcggagta-cgcttccctgaaaagctc-acca 1056
|||||||||||||||||||||||| ||||| ||| | |||| ||||| ||||| ||||
Sbjct: 93499682 tgataaggatggctggtccttgtgatactccaggtaccacttctctgaagagctcaacca 93499623
Query: 1057 gacattcatgagctgcaacctcatcact 1084
||| ||||||||||||||||| ||||||
Sbjct: 93499622 gaccttcatgagctgcaaccttatcact 93499595
>Sscrofa_Chr02
|| Length = 162569375
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 709 gctaaaaagtttgcagagagtcagcctaaaaaggacaccccacggaaagagaaaggttct 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514373 gctaaaaagtttgcagagagtcagcctaaaaaggacaccccacggaaagagaaaggttct 8514432
Query: 769 cgagaagagaagcagaagccccaggctgagcggaaagaggagaagaaggcagctgctcct 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514433 cgagaagagaagcagaagccccaggctgagcggaaagaggagaagaaggcagctgctcct 8514492
Query: 829 gctcctgaggaggagctggacgagtgtgagcaggcgctggctgctgagcccaaggccaag 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8514493 gctcctgaggaggagctggacgagtgtgagcaggcgctggctgctgagcccaaggccaag 8514552
Query: 889 gatccctttgctcacctacccaagag 914
||||||||||||||||||||||||||
Sbjct: 8514553 gatccctttgctcacctacccaagag 8514578
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 69 gaccctgtacacatatcctgaaaactggagggccttcaaagccctcattgccgctcagta 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509143 gaccctgtacacatatcctgaaaactggagggccttcaaagccctcattgccgctcagta 8509202
Query: 129 cagcggggctcaggtccgcgtgctctccgcaccaccccacttccattttggccaaaccaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509203 cagcggggctcaggtccgcgtgctctccgcaccaccccacttccattttggccaaaccaa 8509262
Query: 189 ccacacccccgaatttctccgtaaatttcctgccggtaaggt 230
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509263 ccacacccccgaatttctccgtaaatttcctgccggtaaggt 8509304
Score = 299 bits (151), Expect = 2e-78
Identities = 171/175 (97%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 913 agtacctttgtgttggacgaatttaagcgcaagtactccaacgaggacacactctctgtg 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517274 agtacctttgtgttggacgaatttaagcgcaagtactccaacgaggacacactctctgtg 8517333
Query: 973 gcgctgccgtacttctgggagcactttgataaggatggctggtccttgtggtactcggag 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8517334 gcgctgccgtacttctgggagcactttgataaggatggctggtccttgtggtactcggag 8517393
Query: 1033 ta-cgcttccctgaaaagctca-ccagacattcatgagctgcaacctcatcactg 1085
|| |||||||||||| |||||| |||||| |||||||||||||||||||||||||
Sbjct: 8517394 taccgcttccctgaagagctcacccagaccttcatgagctgcaacctcatcactg 8517448
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 433 caggccacagagaatgcaaaggatgaggtgaggcgagttctggggctgctggatgctcac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8511088 caggccacagagaatgcaaaggatgaggtgaggcgagttctggggctgctggatgctcac 8511147
Query: 493 ttgaagacgaggacttttctggtgggcgaacgtgtgacgctggctgacatcacagttgtc 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8511148 ttgaagacgaggacttttctggtgggcgaacgtgtgacgctggctgacatcacagttgtc 8511207
Query: 553 tgcaccctgttgtggctctacaaacaggt 581
|||||||||||||||||||||||||||||
Sbjct: 8511208 tgcaccctgttgtggctctacaaacaggt 8511236
Score = 287 bits (145), Expect = 6e-75
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 292 gtgagcaacgaggagctgcggggaagtactcctgaggcagcagcccaggtggtgcagtgg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8510203 gtgagcaacgaggagctgcggggaagtactcctgaggcagcagcccaggtggtgcagtgg 8510262
Query: 352 gtgagctttgccgatagcgacatcgtgccccccgccagtacctgggtgttccccaccttg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8510263 gtgagctttgccgatagcgacatcgtgccccccgccagtacctgggtgttccccaccttg 8510322
Query: 412 ggcatcatgcactacaacaagcagg 436
|||||||||||||||||||||||||
Sbjct: 8510323 ggcatcatgcactacaacaagcagg 8510347
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 577 caggtcctggagccttctttccgccaggccttccccaataccaaccgctggttcctcacc 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8513891 caggtcctggagccttctttccgccaggccttccccaataccaaccgctggttcctcacc 8513950
Query: 637 tgcattaaccagccccagttccgggctgtcttgggggaggtgaagctctgtgagaagatg 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8513951 tgcattaaccagccccagttccgggctgtcttgggggaggtgaagctctgtgagaagatg 8514010
Query: 697 gcccagtttgatg 709
|||||||||||||
Sbjct: 8514011 gcccagtttgatg 8514023
Score = 131 bits (66), Expect = 9e-28
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 227 aggttccagcatttgagggtgacgatggattctgtgtgttcgagagcaatgccattgcct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8509983 aggttccagcatttgagggtgacgatggattctgtgtgttcgagagcaatgccattgcct 8510042
Query: 287 actacg 292
||||||
Sbjct: 8510043 actacg 8510048
Score = 105 bits (53), Expect = 5e-20
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 5 cttactttgcggcagcgcggagagccccacccccttttctctgcggaatcaccatggcgg 64
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8507992 cttactttgcggcagcgcagagagccccaccccc-tttctctgcggaatcaccatggcgg 8508050
Query: 65 ccggg 69
|||||
Sbjct: 8508051 ccggg 8508055
>Sscrofa_Chr11
|| Length = 87690581
Score = 63.9 bits (32), Expect = 2e-07
Identities = 114/140 (81%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 138 tcaggtccgcgtgctctccgcaccaccccacttccattttggccaaaccaaccacacccc 197
||||||| | ||||||| | || ||| ||||||||| ||||||||||||| | |||| |
Sbjct: 41555745 tcaggtctgtgtgctcttcacatcactccacttccactttggccaaaccagctgcacctc 41555686
Query: 198 cgaatttctccgtaaatttcctgccggtaaggttccagcatttgagggtgacgatggatt 257
| ||||||| |||||| |||| || ||| |||||||||||||| |||| ||||| ||
Sbjct: 41555685 tgcatttctctacaaattttctgctggaaagtttccagcatttgagagtgatgatgg-tt 41555627
Query: 258 ctgtgtgttcgagagcaatg 277
||| ||||| |||||||||
Sbjct: 41555626 ctgcgtgtttaagagcaatg 41555607
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,277,889
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 10
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)