Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001076
(1606 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040088.1| sorting and assembly machinery component 50 ... 881 0.0
>ref|NP_001040088.1| sorting and assembly machinery component 50 homolog [Bos taurus].
Length = 469
Score = 881 bits (2277), Expect = 0.0
Identities = 430/463 (92%), Positives = 441/463 (95%)
Frame = +1
Query: 217 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 396
TVHARSLEPLPASGPDFG LG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPASGPDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 397 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 576
IM EI DVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV
Sbjct: 63 IMYEIRDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 122
Query: 577 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 756
TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 182
Query: 757 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 936
NF+RNFSVNLYKVTGQFPWSSLRETDRGVSAEY FP W++SHTVKWEGVWRELGCLSR A
Sbjct: 183 NFDRNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPTWKTSHTVKWEGVWRELGCLSRVA 242
Query: 937 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 1116
SFAVRKESGHSLKSSLSH+MV+DSRNSSILP+RGALLKVNQELAGYTGGDVSF+KEDFEL
Sbjct: 243 SFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGALLKVNQELAGYTGGDVSFLKEDFEL 302
Query: 1117 QLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL 1296
QLNKQLI D+VFSASLWGGMLVP+GDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL
Sbjct: 303 QLNKQLILDTVFSASLWGGMLVPMGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL 362
Query: 1297 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLHAGXLCNLNYGEGPKAHIRKLAECI 1476
GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFL+AG LCNLNYGEGPKAHIRKLAECI
Sbjct: 363 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECI 422
Query: 1477 RWSYGAGIVLRLGNIARLELNYCIPMGVXGGDRICDGVQFGAG 1605
RWSYGAGIVLRLGNIARLELNYC+PMGV GDRICDGVQFGAG
Sbjct: 423 RWSYGAGIVLRLGNIARLELNYCVPMGVQRGDRICDGVQFGAG 465
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,999,768
Number of extensions: 1832933
Number of successful extensions: 7415
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7393
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,140,958
Effective search space: 6052330024
Effective search space used: 6052330024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001076
(1606 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531702.2| PREDICTED: similar to SAM50-like protein CGI-51... 873 0.0
>ref|XP_531702.2| PREDICTED: similar to SAM50-like protein CGI-51 [Canis familiaris].
Length = 455
Score = 873 bits (2255), Expect = 0.0
Identities = 425/453 (93%), Positives = 435/453 (96%)
Frame = +1
Query: 217 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 396
TVHARSLEPLPA+GPDFG LG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPANGPDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 397 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 576
I+CEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV
Sbjct: 63 IICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 122
Query: 577 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 756
TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 182
Query: 757 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 936
NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEY FP+W++SHTVKWEGVWRELGCLSRTA
Sbjct: 183 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPIWKTSHTVKWEGVWRELGCLSRTA 242
Query: 937 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 1116
SFAVRKESGHSLKSSLSHAMV+DSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL
Sbjct: 243 SFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 302
Query: 1117 QLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL 1296
QLNKQL+FDSVFS SLWGG+LVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL
Sbjct: 303 QLNKQLVFDSVFSTSLWGGVLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL 362
Query: 1297 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLHAGXLCNLNYGEGPKAHIRKLAECI 1476
GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFL+AG LCNLNYGEGPKAHIRKLAECI
Sbjct: 363 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECI 422
Query: 1477 RWSYGAGIVLRLGNIARLELNYCIPMGVXGGDR 1575
RWSYGAGIVLRLGNIARLELNYC+PMGV GDR
Sbjct: 423 RWSYGAGIVLRLGNIARLELNYCVPMGVQKGDR 455
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,270,845
Number of extensions: 1801578
Number of successful extensions: 7512
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7478
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 427
Effective length of database: 15,274,216
Effective search space: 6522090232
Effective search space used: 6522090232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001076
(1606 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056195.3| sorting and assembly machinery component 50 hom... 895 0.0
>ref|NP_056195.3| sorting and assembly machinery component 50 homolog [Homo sapiens].
Length = 469
Score = 895 bits (2313), Expect = 0.0
Identities = 434/463 (93%), Positives = 446/463 (96%)
Frame = +1
Query: 217 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 396
TVHARSLEPLP+SGPDFGGLG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 397 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 576
I+CEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV
Sbjct: 63 IICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 122
Query: 577 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 756
TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKP+PG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPRPG 182
Query: 757 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 936
NFERNFSVNLYKVTGQFPWSSLRETDRG+SAEY FP+W++SHTVKWEGVWRELGCLSRTA
Sbjct: 183 NFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSRTA 242
Query: 937 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 1116
SFAVRKESGHSLKSSLSHAMV+DSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL
Sbjct: 243 SFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 302
Query: 1117 QLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL 1296
QLNKQLIFDSVFSAS WGGMLVPIGDKPSSIADRFYLGGPTS+RGFSMHS+GPQSEGDYL
Sbjct: 303 QLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGDYL 362
Query: 1297 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLHAGXLCNLNYGEGPKAHIRKLAECI 1476
GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFL+AG LCNLNYGEGPKAHIRKLAECI
Sbjct: 363 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECI 422
Query: 1477 RWSYGAGIVLRLGNIARLELNYCIPMGVXGGDRICDGVQFGAG 1605
RWSYGAGIVLRLGNIARLELNYC+PMGV GDRICDGVQFGAG
Sbjct: 423 RWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAG 465
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,749,678
Number of extensions: 1740114
Number of successful extensions: 7167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7154
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 428
Effective length of database: 14,770,016
Effective search space: 6321566848
Effective search space used: 6321566848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001076
(1606 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848729.1| sorting and assembly machinery component 50 hom... 881 0.0
>ref|NP_848729.1| sorting and assembly machinery component 50 homolog [Mus musculus].
Length = 469
Score = 881 bits (2276), Expect = 0.0
Identities = 428/463 (92%), Positives = 440/463 (95%)
Frame = +1
Query: 217 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 396
TVHARSLEPLP+SG DFG LG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPSSGTDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 397 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 576
I+CEIG+VFKAKNLIEVMR+SHEAREKLLRLGIFRQVDVLIDTC G+DALPNGLDVTFEV
Sbjct: 63 IICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHGEDALPNGLDVTFEV 122
Query: 577 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 756
TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 182
Query: 757 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 936
NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEY FP+W++SHTVKWEGVWRELGCLSRTA
Sbjct: 183 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLWKTSHTVKWEGVWRELGCLSRTA 242
Query: 937 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 1116
SFAVRKESGHSLKSSLSHAMV+DSRNSSILPRRGAL KVNQELAGYTGGDVSFIKEDFEL
Sbjct: 243 SFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALFKVNQELAGYTGGDVSFIKEDFEL 302
Query: 1117 QLNKQLIFDSVFSASLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSVGPQSEGDYL 1296
QLNK L DSVFS SLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHS+GPQSEGDYL
Sbjct: 303 QLNKPLALDSVFSTSLWGGMLVPIGDKPSSIADRFYLGGPTSVRGFSMHSIGPQSEGDYL 362
Query: 1297 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLHAGXLCNLNYGEGPKAHIRKLAECI 1476
GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFL+AG LCNLNYGEGPKAHIRKLAECI
Sbjct: 363 GGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAECI 422
Query: 1477 RWSYGAGIVLRLGNIARLELNYCIPMGVXGGDRICDGVQFGAG 1605
RWSYGAG+VLRLGNIARLELNYCIPMGV GGDRICDGVQFGAG
Sbjct: 423 RWSYGAGVVLRLGNIARLELNYCIPMGVQGGDRICDGVQFGAG 465
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,998,452
Number of extensions: 1451243
Number of successful extensions: 5755
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5744
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 429
Effective length of database: 12,433,743
Effective search space: 5334075747
Effective search space used: 5334075747
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001076
(1606 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361126.1| PREDICTED: sorting and assembly machinery co... 504 e-143
Alignment gi|XP_003362244.1| PREDICTED: sorting and assembly machinery co... 204 1e-52
>ref|XP_003361126.1| PREDICTED: sorting and assembly machinery component 50 homolog,
partial [Sus scrofa].
Length = 389
Score = 504 bits (1297), Expect = e-143
Identities = 284/395 (71%), Positives = 291/395 (73%), Gaps = 39/395 (9%)
Frame = +1
Query: 217 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 396
TVHARSLEPLPASGPDFGGLG KQEILENKD + F ++
Sbjct: 3 TVHARSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDQSPTCLVF-----SQGSA 57
Query: 397 IMCEIGDVFKAKN----------------LIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 528
+GD A L +VMRKSHEAREKLLRLGIFRQVDVLIDTC
Sbjct: 58 AWHRVGDASLALGPAVVSVPWKVTGSVVFLSQVMRKSHEAREKLLRLGIFRQVDVLIDTC 117
Query: 529 QGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYG 708
QGDDALPNGLDVTFEV ELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYG
Sbjct: 118 QGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYG 177
Query: 709 TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTV 888
TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTV
Sbjct: 178 TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTV 237
Query: 889 K-----------WEGVWRELGCLSRT------ASFAVRKESGHSLKSSLSHAMVLDSRNS 1017
K W G R LG S S A R L HAMVLDSRNS
Sbjct: 238 KTGCGGGLDAAPWPG--RVLGAQSLLQPREGWRSVAARAAETAPPGRFLDHAMVLDSRNS 295
Query: 1018 SILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGMLVPIGDK 1197
SILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGG L P GD
Sbjct: 296 SILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASLWGGXLSP-GDL 354
Query: 1198 P------SSIADRFYLGGPTSVRGFSMHSVGPQSE 1284
P S+ + RFYLGGPTSVRGFSMHSVGPQSE
Sbjct: 355 PTRFPLTSASSSRFYLGGPTSVRGFSMHSVGPQSE 389
>ref|XP_003362244.1| PREDICTED: sorting and assembly machinery component 50 homolog,
partial [Sus scrofa].
Length = 96
Score = 204 bits (519), Expect = 1e-52
Identities = 93/96 (96%), Positives = 94/96 (97%)
Frame = +1
Query: 1288 DYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLHAGXLCNLNYGEGPKAHIRKLA 1467
DYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFL+AG LCNLNYGEGPKAHIRKLA
Sbjct: 1 DYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLA 60
Query: 1468 ECIRWSYGAGIVLRLGNIARLELNYCIPMGVXGGDR 1575
ECIRWSYGAGIVLRLGNIARLELNYCIPMGV GGDR
Sbjct: 61 ECIRWSYGAGIVLRLGNIARLELNYCIPMGVQGGDR 96
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 40,269,983
Number of extensions: 1329137
Number of successful extensions: 4688
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4674
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 431
Effective length of database: 8,754,644
Effective search space: 3773251564
Effective search space used: 3773251564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001076
(1606 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896519.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 278 9e-72
gb|GL893573.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 246 3e-62
gb|GL896390.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 68 2e-08
>gb|GL896519.1| Sus scrofa unplaced genomic scaffold chrU_scaffold851
Length = 2398
Score = 278 bits (140), Expect = 9e-72
Identities = 147/150 (98%)
Strand = Plus / Minus
Query: 1284 aggagactacctgggtggagaggcgtactgggccggcggcctgcacctgtacaccccgtt 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 aggagactacctgggtggagaggcgtactgggccggcggcctgcacctgtacaccccgtt 1706
Query: 1344 acctttccgacccggccagggcggctttggagagctcttccgaacgcacttttttctnca 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1705 acctttccgacccggccagggcggctttggagagctcttccgaacgcacttttttctcaa 1646
Query: 1404 cgccgganacctctgcaacctcaactatgg 1433
||||||| ||||||||||||||||||||||
Sbjct: 1645 cgccggaaacctctgcaacctcaactatgg 1616
Score = 272 bits (137), Expect = 6e-70
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 1432 ggcgagggccccaaagctcacattcgcaagctggctgagtgcatccgctggtcctacggg 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 ggcgagggccccaaagctcacattcgcaagctggctgagtgcatccgctggtcctacggg 1001
Query: 1492 gccgggatcgtcctcaggctgggcaacatcgcccggctggagctgaactactgcatcccc 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gccgggatcgtcctcaggctgggcaacatcgcccggctggagctgaactactgcatcccc 941
Query: 1552 atgggcgtgcnaggcggcgacagg 1575
|||||||||| ||||||||||||
Sbjct: 940 atgggcgtgcagggcggcgacagg 917
>gb|GL893573.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2324
Length = 55137
Score = 246 bits (124), Expect = 3e-62
Identities = 130/132 (98%)
Strand = Plus / Minus
Query: 639 ggtgcttggcctcaaactccctaatcttctaggccgtgcagagaaggtgacgtttcagtt 698
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11156 ggtgcttggcctcaaactccctaatcttctaggccgtgcagagaaggtgacatttcagtt 11097
Query: 699 ttcctacggaacaaaagaaacttcgtacggcctgtccttcttcaaaccacagcccggaaa 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11096 ttcctacggaacaaaagaaacttcgtacggcctgtccttcttcaaaccacagcccggaaa 11037
Query: 759 cttcgaaagaaa 770
|||||| |||||
Sbjct: 11036 cttcgagagaaa 11025
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 231 gagcctggagcctcttccagccagtggacccgatttcggaggattaggagaagaagctga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18069 gagcctggagcctcttccagccagtggacccgatttcggaggattaggagaagaagctga 18010
Query: 291 atttgtggaagttgaacctgaagcaaaacaggaaattcttgagaacaaggatgtg 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18009 atttgtggaagttgaacctgaagcaaaacaggaaattcttgagaacaaggatgtg 17955
Score = 210 bits (106), Expect = 2e-51
Identities = 109/110 (99%)
Strand = Plus / Minus
Query: 531 aggtgacgacgcgcttcccaacgggttagacgtcaccttcgaagtgacggaactgcggcg 590
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12040 aggtgacgacgcgcttcccaacgggttagacgtcaccttcgaagtgatggaactgcggcg 11981
Query: 591 actgacgggcagttacaacaccatggtcgggaacaacgagggcagcatgg 640
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11980 actgacgggcagttacaacaccatggtcgggaacaacgagggcagcatgg 11931
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 127 caccggaggcccgccctctgctctcaccagccgagctttggttgggtcctggcagctctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22737 caccggaggcccgccctctgctctcaccagccgagctttggttgggtcctggcagctctg 22678
Query: 187 ggaggcagcgccggagagtgagccatggggacggtgcacgcccgg 231
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22677 ggaggcagcgccggagagtgagccatggggacggtgcacgcccgg 22633
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1057 caggagctggcgggctacaccggaggggacgtgagcttcataaaagaagattttgaactt 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7684 caggagctggcgggctacaccggaggggacgtgagcttcataaaagaagattttgaactt 7625
Query: 1117 cagttgaacaaacagctcatatttgattcagt 1148
||||||||||||||||||||||||||||||||
Sbjct: 7624 cagttgaacaaacagctcatatttgattcagt 7593
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 443 aggtcatgaggaaatcccatgaagcccgtgagaagttgcttcgtctaggaatatttagac 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15629 aggtcatgaggaaatcccatgaagcccgtgagaagttgcttcgtctaggaatatttagac 15570
Query: 503 aagtggacgtcttgattgacacgtgtcaaggt 534
||||||||||||||||||||||||||||||||
Sbjct: 15569 aagtggacgtcttgattgacacgtgtcaaggt 15538
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 771 tttctcggtgaacttatacaaagttaccgggcagttcccctggagctccctgcgcgagac 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10710 tttctcggtgaacttatacaaagttaccgggcagttcccctggagctccctgcgcgagac 10651
Query: 831 agacagaggggtgtcggccgagtactgt 858
||||||||||||||||||||||||||||
Sbjct: 10650 agacagaggggtgtcggccgagtactgt 10623
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 987 gcacgcgatggtcctcgactctcggaactcctccatcttaccgcgaaggggcgctctgct 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8567 gcacgcgatggtcctcgactctcggaactcctccatcttaccgcgaaggggcgctctgct 8508
Query: 1047 caaagttaaccagg 1060
||||||||||||||
Sbjct: 8507 caaagttaaccagg 8494
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 1215 caggttttacctcgggggacccacgagcgtgcgcggcttcagcatgcacagcgttgggcc 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 caggttttacctcgggggacccacgagcgtgcgcggcttcagcatgcacagcgttgggcc 729
Query: 1275 gcagagcgaagg 1286
||||||||||||
Sbjct: 728 gcagagcgaagg 717
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 859 ttccccgtgtggaggagcagccacaccgtcaagtggg 895
|||||||||||||||||||||||||||||||||||||
Sbjct: 9031 ttccccgtgtggaggagcagccacaccgtcaagtggg 8995
>gb|GL896390.1| Sus scrofa unplaced genomic scaffold chrU_scaffold735
Length = 9712
Score = 67.9 bits (34), Expect = 2e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1573 aggatatgtgacggcgtccagtttggagctggga 1606
||||||||||||||||||||||||||||||||||
Sbjct: 2947 aggatatgtgacggcgtccagtttggagctggga 2980
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,802,938
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 13
Length of query: 1606
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1584
Effective length of database: 2,808,408,574
Effective search space: 4448519181216
Effective search space used: 4448519181216
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)