Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001093
(1100 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040058.1| coactosin-like protein [Bos taurus]. 283 2e-76
>ref|NP_001040058.1| coactosin-like protein [Bos taurus].
Length = 142
Score = 283 bits (724), Expect = 2e-76
Identities = 141/142 (99%), Positives = 142/142 (100%)
Frame = +2
Query: 272 MATKIDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFA 451
MATKIDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFA
Sbjct: 1 MATKIDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFA 60
Query: 452 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 631
FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 120
Query: 632 EEDFIKSELKKAGGANYDAQTE 697
EEDFIK+ELKKAGGANYDAQTE
Sbjct: 121 EEDFIKNELKKAGGANYDAQTE 142
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,320,270
Number of extensions: 1274579
Number of successful extensions: 6223
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6190
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,240,222
Effective search space: 3730938164
Effective search space used: 3730938164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001093
(1100 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546800.2| PREDICTED: similar to coactosin-like 1 [Canis f... 174 1e-43
>ref|XP_546800.2| PREDICTED: similar to coactosin-like 1 [Canis familiaris].
Length = 96
Score = 174 bits (441), Expect = 1e-43
Identities = 87/90 (96%), Positives = 90/90 (100%)
Frame = +2
Query: 428 TDDVRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEF 607
++D+RLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEF
Sbjct: 7 SNDIRLFAFVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEF 66
Query: 608 VISDRKELEEDFIKSELKKAGGANYDAQTE 697
VISDRKELEEDFIKSELKKAGGANYDAQTE
Sbjct: 67 VISDRKELEEDFIKSELKKAGGANYDAQTE 96
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,155,869
Number of extensions: 1297210
Number of successful extensions: 6401
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6359
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 262
Effective length of database: 15,407,560
Effective search space: 4036780720
Effective search space used: 4036780720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001093
(1100 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066972.1| coactosin-like protein [Homo sapiens]. 278 6e-75
>ref|NP_066972.1| coactosin-like protein [Homo sapiens].
Length = 142
Score = 278 bits (711), Expect = 6e-75
Identities = 139/142 (97%), Positives = 139/142 (97%)
Frame = +2
Query: 272 MATKIDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFA 451
MATKIDKEACR AYNLVRDD SAVIWVTFKYDGSTIVPGEQGAEYQ FIQQCTDDVRLFA
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFA 60
Query: 452 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 631
FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 120
Query: 632 EEDFIKSELKKAGGANYDAQTE 697
EEDFIKSELKKAGGANYDAQTE
Sbjct: 121 EEDFIKSELKKAGGANYDAQTE 142
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,975,606
Number of extensions: 1248624
Number of successful extensions: 5842
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5812
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 262
Effective length of database: 14,868,908
Effective search space: 3895653896
Effective search space used: 3895653896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001093
(1100 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082347.1| coactosin-like protein [Mus musculus]. 269 3e-72
>ref|NP_082347.1| coactosin-like protein [Mus musculus].
Length = 142
Score = 269 bits (687), Expect = 3e-72
Identities = 132/142 (92%), Positives = 139/142 (97%)
Frame = +2
Query: 272 MATKIDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFA 451
MATKIDKEACR AYNLVRDD SAVIWVTF+YDG+TIVPG+QGA+YQ FIQQCTDDVRLFA
Sbjct: 1 MATKIDKEACRAAYNLVRDDGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFA 60
Query: 452 FVRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 631
FVRFTTGDAMSKRSKFALITWIGE+VSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL
Sbjct: 61 FVRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKEL 120
Query: 632 EEDFIKSELKKAGGANYDAQTE 697
EEDFI+SELKKAGGANYDAQ+E
Sbjct: 121 EEDFIRSELKKAGGANYDAQSE 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,088,538
Number of extensions: 1028007
Number of successful extensions: 4790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4756
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 263
Effective length of database: 12,523,851
Effective search space: 3293772813
Effective search space used: 3293772813
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001093
(1100 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361781.1| PREDICTED: coactosin-like protein-like, part... 276 2e-74
>ref|XP_003361781.1| PREDICTED: coactosin-like protein-like, partial [Sus scrofa].
Length = 152
Score = 276 bits (705), Expect = 2e-74
Identities = 137/139 (98%), Positives = 138/139 (99%)
Frame = +2
Query: 281 KIDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFAFVR 460
+ DKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFAFVR
Sbjct: 14 RXDKEACRTAYNLVRDDSSAVIWVTFKYDGSTIVPGEQGAEYQDFIQQCTDDVRLFAFVR 73
Query: 461 FTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEED 640
FTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEED
Sbjct: 74 FTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEED 133
Query: 641 FIKSELKKAGGANYDAQTE 697
FIKSELKKAGGANYDAQTE
Sbjct: 134 FIKSELKKAGGANYDAQTE 152
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,651,192
Number of extensions: 866350
Number of successful extensions: 3778
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3761
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 266
Effective length of database: 8,854,232
Effective search space: 2355225712
Effective search space used: 2355225712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001093
(1100 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL895339.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 922 0.0
>gb|GL895339.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3914
Length = 67330
Score = 922 bits (465), Expect = 0.0
Identities = 503/517 (97%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 585 tgcagaatttcgccaaagagtttgtgatcagtgatcggaaggagctggaggaagatttta 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15049 tgcagaatttcgccaaagagtttgtgatcagtgatcggaaggagctggaggaagatttta 14990
Query: 645 tcaagagcgagctcaagaaggccgggggtgccaattatgacgcccagacggagtaacccc 704
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14989 tcaagagcgagctcaagaaggccgggggtgccaattatgatgcccagacggagtaacccc 14930
Query: 705 cgcaccccgcgccttgccaaagtcatctgcctgctccccgggggaggggaccgcggcctc 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14929 cgcaccccgcgccttgccaaagtcatctgcctgctccccgggggaggggaccgcggcctc 14870
Query: 765 agctaccagcccatcagcccaccagggagaggagacgcgatgagaggcaacgcccgccac 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14869 agctaccagcccatcagcccaccagggagaggagacgcgatgagaggcaacgcccgccac 14810
Query: 825 cccgtccgcaacccagctcccctccccgcttccccttgtgcacctgctgtgtcccgtccc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14809 cccgtccgcaacccagctcccctccccgcttccccttgtgcacctgctgtgtcccgtccc 14750
Query: 885 atgaagctcatggaacatctttctttgcnnnnnnnncttttctccccctgacccctttct 944
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 14749 atgaagctcatggaacatctttctttgcttttttttcttttctccccctgacccctttct 14690
Query: 945 tgttctaaacaaaaatcatttggatgccaaggtcacgcacatcaccagatcggaagtgcc 1004
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 14689 tgttctaaacaaaaatcatttggatgccaaggtcacgcacatcaccagatcggaggtgcc 14630
Query: 1005 tcccgcggtgaccctctcctggcatttctt-acgcaaaggcagcctgcccgggctgaccc 1063
|||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 14629 tcccgcggtgaccctctcctggcatttcttaacgcacaggcagcctgcccggcctgaccc 14570
Query: 1064 atcaacctcgcgtcccttctggtgcctgggccagtgt 1100
|||||||||||||| ||||||||||||||||||||||
Sbjct: 14569 atcaacctcgcgtcgcttctggtgcctgggccagtgt 14533
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 429 cagatgacgtccgattgtttgccttcgtgcgcttcaccaccggggatgccatgagcaaga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33005 cagatgacgtccgattgtttgccttcgtgcgcttcaccaccggggatgccatgagcaaga 32946
Query: 489 ggtccaagtttgccctcatcacctggattggcgagaacgtcagcgggctgcagcgcgcca 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32945 ggtccaagtttgccctcatcacctggattggcgagaacgtcagcgggctgcagcgcgcca 32886
Query: 549 agacgggcaccgacaagaccctggtgaaggaagtggtgcag 589
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 32885 agacgggcaccgacaagaccctggtgaaggaagtggtgcag 32845
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 348 gggtgacttttaaatacgacggctccaccatcgtccccggcgagcagggagcggaatatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60880 gggtgacttttaaatacgacggctccaccatcgtccccggcgagcagggagcggaatatc 60821
Query: 408 aggacttcatccaacaatgcacag 431
||||||||||||||||||||||||
Sbjct: 60820 aggacttcatccaacaatgcacag 60797
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 287 gacaaagaggcttgccggacggcgtataacctggtgcgcgacgacagctcggccgtcatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61203 gacaaagaggcttgccggacggcgtataacctggtgcgcgacgacagctcggccgtcatc 61144
Query: 347 tgg 349
|||
Sbjct: 61143 tgg 61141
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,445,445
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 5
Length of query: 1100
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1079
Effective length of database: 2,808,413,156
Effective search space: 3030277795324
Effective search space used: 3030277795324
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)