Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001094
(1236 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776614.1| steroidogenic acute regulatory protein, mitocho... 514 e-146
Alignment gi|XP_002685890.1| PREDICTED: Steroidogenic acute regulatory pr... 511 e-145
Alignment gi|XP_001250262.1| PREDICTED: Steroidogenic acute regulatory pr... 511 e-145
Alignment gi|NP_001180072.1| stAR-related lipid transfer protein 3 [Bos t... 148 8e-36
Alignment gi|XP_002696006.1| PREDICTED: START domain containing 3-like [B... 148 8e-36
Alignment gi|XP_002697875.1| PREDICTED: START domain containing protein 6... 69 1e-11
Alignment gi|XP_610705.3| PREDICTED: START domain containing protein 6 [B... 69 1e-11
Alignment gi|NP_001073734.1| stAR-related lipid transfer protein 5 [Bos t... 65 2e-10
>ref|NP_776614.1| steroidogenic acute regulatory protein, mitochondrial precursor [Bos
taurus].
Length = 285
Score = 514 bits (1323), Expect = e-146
Identities = 257/285 (90%), Positives = 271/285 (95%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
MLLATFKLCAGSSYRHVR+MKGL+ QAVLA+GQELNRRALGGP +WINQVRRR SLLG
Sbjct: 1 MLLATFKLCAGSSYRHVRSMKGLQQQAVLAIGQELNRRALGGPAPAAWINQVRRRGSLLG 60
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
SQLED LYSDQ+LA+IQQGEEAMQ AL IL +QEGWKKESRQ NGDEVLSKVIPDVGKVF
Sbjct: 61 SQLEDPLYSDQELAHIQQGEEAMQWALGILKDQEGWKKESRQANGDEVLSKVIPDVGKVF 120
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVVDQPMERLYEELVERMEAMGEWNP+VK+IK+LQKIGKDTVITHELAAEAAGNLVG
Sbjct: 121 RLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTVITHELAAEAAGNLVG 180
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSVRCTKRRGS+CVLAGMAT + EMP+QKGVIRAEHGPTCMVL PLAGSPS+TKLT
Sbjct: 181 PRDFVSVRCTKRRGSMCVLAGMATLYEEMPQQKGVIRAEHGPTCMVLRPLAGSPSRTKLT 240
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLES PALEARC
Sbjct: 241 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESCPALEARC 285
>ref|XP_002685890.1| PREDICTED: Steroidogenic acute regulatory protein, mitochondrial-like
[Bos taurus].
Length = 285
Score = 511 bits (1317), Expect = e-145
Identities = 256/285 (89%), Positives = 270/285 (94%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
MLLATFKLCAGSSYRHVR+MKGL+ QAVLA+GQELNRRALGGP +WINQVRRR SLLG
Sbjct: 1 MLLATFKLCAGSSYRHVRSMKGLQQQAVLAIGQELNRRALGGPAPAAWINQVRRRGSLLG 60
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
SQLED LYS+Q+LAYIQQGEEAMQRAL IL +QEGWKKESRQ NGDEVLSKVIPDVGKVF
Sbjct: 61 SQLEDPLYSNQELAYIQQGEEAMQRALGILKDQEGWKKESRQANGDEVLSKVIPDVGKVF 120
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVV QPMERLYEELVERMEAMGEWNP+VK+IK+LQKIGKDTVITHELAAEAAGNLVG
Sbjct: 121 RLEVVVHQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTVITHELAAEAAGNLVG 180
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSV CTKRRGS+CVLAGMAT + EMP+QKGVIRAEHGPTCMVL PLAGSPS+TKLT
Sbjct: 181 PRDFVSVGCTKRRGSMCVLAGMATLYEEMPQQKGVIRAEHGPTCMVLRPLAGSPSRTKLT 240
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLES PALEARC
Sbjct: 241 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESCPALEARC 285
>ref|XP_001250262.1| PREDICTED: Steroidogenic acute regulatory protein, mitochondrial-like
[Bos taurus].
Length = 285
Score = 511 bits (1317), Expect = e-145
Identities = 256/285 (89%), Positives = 270/285 (94%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
MLLATFKLCAGSSYRHVR+MKGL+ QAVLA+GQELNRRALGGP +WINQVRRR SLLG
Sbjct: 1 MLLATFKLCAGSSYRHVRSMKGLQQQAVLAIGQELNRRALGGPAPAAWINQVRRRGSLLG 60
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
SQLED LYS+Q+LAYIQQGEEAMQRAL IL +QEGWKKESRQ NGDEVLSKVIPDVGKVF
Sbjct: 61 SQLEDPLYSNQELAYIQQGEEAMQRALGILKDQEGWKKESRQANGDEVLSKVIPDVGKVF 120
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVV QPMERLYEELVERMEAMGEWNP+VK+IK+LQKIGKDTVITHELAAEAAGNLVG
Sbjct: 121 RLEVVVHQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTVITHELAAEAAGNLVG 180
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSV CTKRRGS+CVLAGMAT + EMP+QKGVIRAEHGPTCMVL PLAGSPS+TKLT
Sbjct: 181 PRDFVSVGCTKRRGSMCVLAGMATLYEEMPQQKGVIRAEHGPTCMVLRPLAGSPSRTKLT 240
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLES PALEARC
Sbjct: 241 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESCPALEARC 285
>ref|NP_001180072.1| stAR-related lipid transfer protein 3 [Bos taurus].
Length = 448
Score = 148 bits (374), Expect = 8e-36
Identities = 80/208 (38%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ Y+ QG+EAM IL+ +E WK E E GD V + IP GK F L+ +
Sbjct: 234 FSAQEREYVLQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEIPFHGKTFILKTFLP 293
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+V
Sbjct: 294 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVNV 353
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + AG+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 354 RRIERRRDRYLSAGIATTHCAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFIWILNTDL 413
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 414 KGRLPRYLIHQSLAATMFEFAFHLRQRI 441
>ref|XP_002696006.1| PREDICTED: START domain containing 3-like [Bos taurus].
Length = 448
Score = 148 bits (374), Expect = 8e-36
Identities = 80/208 (38%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ Y+ QG+EAM IL+ +E WK E E GD V + IP GK F L+ +
Sbjct: 234 FSAQEREYVLQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEIPFHGKTFILKTFLP 293
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+V
Sbjct: 294 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVNV 353
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + AG+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 354 RRIERRRDRYLSAGIATTHCAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFIWILNTDL 413
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 414 KGRLPRYLIHQSLAATMFEFAFHLRQRI 441
>ref|XP_002697875.1| PREDICTED: START domain containing protein 6-like [Bos taurus].
Length = 226
Score = 68.6 bits (166), Expect = 1e-11
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Frame = +3
Query: 459 YIQQGEEAMQRALDILSNQEGWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMER 632
Y ++ Q L + GWK K S++ SK G ++R+E ++ + +
Sbjct: 3 YKALAQQTAQEILGYYQDTSGWKVVKNSKKITVSSKASKKFH--GNLYRVEAMIPESTSK 60
Query: 633 LYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR 812
L + L + E W+ S+K ++ KI DT + H + A + PRDF+++ K
Sbjct: 61 LSDFLF-KPENRVTWDKSLKMYNMVLKIDLDTFLCHTITESFAMGSISPRDFINLVSVKH 119
Query: 813 -RGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWL 989
G++ V++ + DF P IR + + P+ +P+ +KL + +++G L
Sbjct: 120 YEGNMDVISSTSVDFPAYPPSSSYIRGYNHACGYICLPVQENPAYSKLVMFVQTEMRGKL 179
Query: 990 PKTIINQVLSQTQVDFANHLRKRLESR 1070
+II + V F +++ ++++
Sbjct: 180 APSIIETTMPSNLVSFMINVKDGIKTQ 206
>ref|XP_610705.3| PREDICTED: START domain containing protein 6 [Bos taurus].
Length = 226
Score = 68.6 bits (166), Expect = 1e-11
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 3/207 (1%)
Frame = +3
Query: 459 YIQQGEEAMQRALDILSNQEGWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMER 632
Y ++ Q L + GWK K S++ SK G ++R+E ++ + +
Sbjct: 3 YKALAQQTAQEILGYYQDTSGWKVVKNSKKITVSSKASKKFH--GNLYRVEAMIPESTSK 60
Query: 633 LYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR 812
L + L + E W+ S+K ++ KI DT + H + A + PRDF+++ K
Sbjct: 61 LSDFLF-KPENRVTWDKSLKMYNMVLKIDLDTFLCHTITESFAMGSISPRDFINLVSVKH 119
Query: 813 -RGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWL 989
G++ V++ + DF P IR + + P+ +P+ +KL + +++G L
Sbjct: 120 YEGNMDVISSTSVDFPAYPPSSSYIRGYNHACGYICLPVQENPAYSKLVMFVQTEMRGKL 179
Query: 990 PKTIINQVLSQTQVDFANHLRKRLESR 1070
+II + V F +++ ++++
Sbjct: 180 APSIIETTMPSNLVSFMINVKDGIKTQ 206
>ref|NP_001073734.1| stAR-related lipid transfer protein 5 [Bos taurus].
Length = 213
Score = 64.7 bits (156), Expect = 2e-10
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Frame = +3
Query: 450 DLAYIQQGEEAM-QRALDILSNQEGWKKESRQENGDEVLSKVIPDV---GKVFRLEVVVD 617
DLA Q EA+ ++ L ++ GWK R+ NG V + P V G +++ E +V+
Sbjct: 2 DLATAAQVSEAVAEKMLQYRRDKSGWKI-CREGNGVSVSWR--PSVEFPGNLYKGEGIVN 58
Query: 618 QPMERLYEELVERMEAM-GEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVS 794
E++++ + + +W+ +V +I++ + + + A L+ PRDFV
Sbjct: 59 GTPEQVWDCVKPLAGTLRAQWDENVNSFEIIESLTDTLLFSRTTTPSAVMKLISPRDFVD 118
Query: 795 VRCTKRRGSVCVLAGMAT-DFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSI 971
+ + + + A + P +R + P PL G P+KT L
Sbjct: 119 LILVRTYEDGTISSNAANVEHPSCPPNPAYVRGFNHPCGCFCEPLPGEPNKTSLVTFFQT 178
Query: 972 DLKGWLPKTIINQVLSQTQVDFANHLRKRLE 1064
DL G+LP+++++ ++ F +L K ++
Sbjct: 179 DLSGYLPQSVVDSFFPRSMAGFYANLEKAVK 209
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,415,392
Number of extensions: 1403202
Number of successful extensions: 4950
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4943
Number of HSP's successfully gapped: 8
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001094
(1236 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091011.1| steroidogenic acute regulatory protein, mito... 522 e-148
Alignment gi|XP_548144.2| PREDICTED: similar to steroidogenic acute regul... 150 3e-36
Alignment gi|XP_851474.1| PREDICTED: similar to steroidogenic acute regul... 150 3e-36
Alignment gi|XP_863798.1| PREDICTED: similar to steroidogenic acute regul... 150 3e-36
Alignment gi|XP_863777.1| PREDICTED: similar to steroidogenic acute regul... 150 3e-36
Alignment gi|XP_863752.1| PREDICTED: similar to MLN 64 protein (StAR-rela... 148 9e-36
Alignment gi|XP_858491.1| PREDICTED: similar to START domain containing p... 69 7e-12
Alignment gi|XP_533397.1| PREDICTED: similar to START domain containing p... 69 7e-12
Alignment gi|XP_536287.2| PREDICTED: similar to START domain containing 4... 55 2e-07
>ref|NP_001091011.1| steroidogenic acute regulatory protein, mitochondrial [Canis lupus
familiaris].
Length = 285
Score = 522 bits (1344), Expect = e-148
Identities = 256/285 (89%), Positives = 273/285 (95%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
MLLATFKLCAGSSYRHVRNMKGLRHQA+LA+GQELNRRALGGPT G+WINQV+RRSSLLG
Sbjct: 1 MLLATFKLCAGSSYRHVRNMKGLRHQAMLAIGQELNRRALGGPTPGAWINQVQRRSSLLG 60
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
S+LE+TLYSDQ+LAYI+QGEEAMQ+AL ILSNQEGWKKES+Q NGD+VLSKV+PDVGKVF
Sbjct: 61 SRLEETLYSDQELAYIRQGEEAMQKALGILSNQEGWKKESQQANGDKVLSKVVPDVGKVF 120
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVVDQPMERLYEELVERME MGEWNP+VK++K+LQKIGKDTVITHELAAE+AGNLVG
Sbjct: 121 RLEVVVDQPMERLYEELVERMETMGEWNPNVKEVKVLQKIGKDTVITHELAAESAGNLVG 180
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSVRC KRRGS CVLAGMAT FGEMPEQKGVIR EHGPTCMVLHPLA SPSKTKLT
Sbjct: 181 PRDFVSVRCAKRRGSTCVLAGMATHFGEMPEQKGVIRGEHGPTCMVLHPLAQSPSKTKLT 240
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRK LES PA EARC
Sbjct: 241 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKHLESSPAPEARC 285
>ref|XP_548144.2| PREDICTED: similar to steroidogenic acute regulatory protein related
isoform 1 [Canis familiaris].
Length = 445
Score = 150 bits (378), Expect = 3e-36
Identities = 81/208 (38%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI QG+EAM IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 231 FSAQEREYIHQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 290
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+V
Sbjct: 291 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVNV 350
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR V +G+AT P +R E+GP V+ A +P W+L+ DL
Sbjct: 351 RRIERRRDRYVSSGIATTHCAKPPTHKYVRGENGPGGFVVLKSASNPRVCTFVWILNTDL 410
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 411 KGRLPRYLIHQSLAATMFEFAFHLRQRI 438
>ref|XP_851474.1| PREDICTED: similar to steroidogenic acute regulatory protein related
isoform 2 [Canis familiaris].
Length = 445
Score = 150 bits (378), Expect = 3e-36
Identities = 81/208 (38%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI QG+EAM IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 231 FSAQEREYIHQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 290
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+V
Sbjct: 291 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVNV 350
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR V +G+AT P +R E+GP V+ A +P W+L+ DL
Sbjct: 351 RRIERRRDRYVSSGIATTHCAKPPTHKYVRGENGPGGFVVLKSASNPRVCTFVWILNTDL 410
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 411 KGRLPRYLIHQSLAATMFEFAFHLRQRI 438
>ref|XP_863798.1| PREDICTED: similar to steroidogenic acute regulatory protein related
isoform 5 [Canis familiaris].
Length = 412
Score = 150 bits (378), Expect = 3e-36
Identities = 81/208 (38%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI QG+EAM IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 198 FSAQEREYIHQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 257
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+V
Sbjct: 258 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVNV 317
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR V +G+AT P +R E+GP V+ A +P W+L+ DL
Sbjct: 318 RRIERRRDRYVSSGIATTHCAKPPTHKYVRGENGPGGFVVLKSASNPRVCTFVWILNTDL 377
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 378 KGRLPRYLIHQSLAATMFEFAFHLRQRI 405
>ref|XP_863777.1| PREDICTED: similar to steroidogenic acute regulatory protein related
isoform 4 [Canis familiaris].
Length = 412
Score = 150 bits (378), Expect = 3e-36
Identities = 81/208 (38%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI QG+EAM IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 198 FSAQEREYIHQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 257
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+V
Sbjct: 258 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVNV 317
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR V +G+AT P +R E+GP V+ A +P W+L+ DL
Sbjct: 318 RRIERRRDRYVSSGIATTHCAKPPTHKYVRGENGPGGFVVLKSASNPRVCTFVWILNTDL 377
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 378 KGRLPRYLIHQSLAATMFEFAFHLRQRI 405
>ref|XP_863752.1| PREDICTED: similar to MLN 64 protein (StAR-related lipid transfer
protein 3) (StARD3) (START domain-containing protein 3)
(CAB1 protein) isoform 3 [Canis familiaris].
Length = 451
Score = 148 bits (374), Expect = 9e-36
Identities = 81/209 (38%), Positives = 124/209 (59%)
Frame = +3
Query: 435 LYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVV 614
L Q+ YI QG+EAM IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 236 LLPGQEREYIHQGKEAMAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFL 295
Query: 615 DQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVS 794
P E +Y+E++ + E M WN +V +ILQ++ +T+I++++++ AAG +V PRDFV+
Sbjct: 296 PCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSSGAAGGVVSPRDFVN 355
Query: 795 VRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSID 974
VR +RR V +G+AT P +R E+GP V+ A +P W+L+ D
Sbjct: 356 VRRIERRRDRYVSSGIATTHCAKPPTHKYVRGENGPGGFVVLKSASNPRVCTFVWILNTD 415
Query: 975 LKGWLPKTIINQVLSQTQVDFANHLRKRL 1061
LKG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 416 LKGRLPRYLIHQSLAATMFEFAFHLRQRI 444
>ref|XP_858491.1| PREDICTED: similar to START domain containing protein 6 isoform 3
[Canis familiaris].
Length = 225
Score = 69.3 bits (168), Expect = 7e-12
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Frame = +3
Query: 480 AMQRALDILS-NQE--GWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEE 644
A + AL+IL NQ+ GWK K S++ SK G ++R+E V+ + L +
Sbjct: 7 AQETALEILGYNQDTTGWKVVKTSKKITVSSKASKKFH--GNLYRVEGVIPESTTNL-SD 63
Query: 645 LVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR-RGS 821
+ + E W+ ++K ++ +I DT I H + A + PRDFV + KR G+
Sbjct: 64 FLYKPENRVTWDKALKVYNMVHRIDSDTCICHTITQSFAMGSISPRDFVDLVYFKRCEGN 123
Query: 822 VCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTI 1001
+ +++ + DF P +R + + PL +P+ +KL + +++G L +I
Sbjct: 124 MDIISSNSVDFPAYPPSSNYVRGYNHACGYICSPLQENPAHSKLVMFIQTEMRGKLSPSI 183
Query: 1002 INQVLSQTQVDF 1037
I + V F
Sbjct: 184 IEATMPSNLVSF 195
>ref|XP_533397.1| PREDICTED: similar to START domain containing protein 6 isoform 1
[Canis familiaris].
Length = 225
Score = 69.3 bits (168), Expect = 7e-12
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 6/192 (3%)
Frame = +3
Query: 480 AMQRALDILS-NQE--GWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEE 644
A + AL+IL NQ+ GWK K S++ SK G ++R+E V+ + L +
Sbjct: 7 AQETALEILGYNQDTTGWKVVKTSKKITVSSKASKKFH--GNLYRVEGVIPESTTNL-SD 63
Query: 645 LVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR-RGS 821
+ + E W+ ++K ++ +I DT I H + A + PRDFV + KR G+
Sbjct: 64 FLYKPENRVTWDKALKVYNMVHRIDSDTCICHTITQSFAMGSISPRDFVDLVYFKRCEGN 123
Query: 822 VCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTI 1001
+ +++ + DF P +R + + PL +P+ +KL + +++G L +I
Sbjct: 124 MDIISSNSVDFPAYPPSSNYVRGYNHACGYICSPLQENPAHSKLVMFIQTEMRGKLSPSI 183
Query: 1002 INQVLSQTQVDF 1037
I + V F
Sbjct: 184 IEATMPSNLVSF 195
>ref|XP_536287.2| PREDICTED: similar to START domain containing 4, sterol regulated
[Canis familiaris].
Length = 287
Score = 54.7 bits (130), Expect = 2e-07
Identities = 38/181 (20%), Positives = 81/181 (44%)
Frame = +3
Query: 522 WKKESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIK 701
W+K S + NG +F+ + V+D + + + + + +W+ + +
Sbjct: 120 WRKPSEEFNG------------YLFKAQGVIDDIVNSVIDHIRPGPYRL-DWDSLMTSMD 166
Query: 702 ILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGV 881
IL+ ++ + A N++ PR+FV T + G++ D+ E ++
Sbjct: 167 ILEHFEENCCVMRYTTAGQLWNIISPREFVDFSYTVDYEDGLLSCGLSVDWSE--QRPEF 224
Query: 882 IRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRL 1061
IR + P P +P ++ LT + DL+G +P++ ++ ++ T + F LRK L
Sbjct: 225 IRGFNHPCGWFCVPRKDNPQQSLLTGYIQTDLRGMIPQSAVDTAMASTLISFYVDLRKAL 284
Query: 1062 E 1064
+
Sbjct: 285 Q 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,966,001
Number of extensions: 1385272
Number of successful extensions: 5528
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5493
Number of HSP's successfully gapped: 9
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001094
(1236 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000340.2| steroidogenic acute regulatory protein, mitocho... 524 e-149
Alignment gi|NP_001159410.1| stAR-related lipid transfer protein 3 isofor... 149 5e-36
Alignment gi|NP_001159409.1| stAR-related lipid transfer protein 3 isofor... 149 5e-36
Alignment gi|NP_006795.3| stAR-related lipid transfer protein 3 isoform 1... 149 5e-36
Alignment gi|NP_631910.1| stAR-related lipid transfer protein 6 [Homo sap... 72 8e-13
Alignment gi|NP_871629.1| stAR-related lipid transfer protein 5 [Homo sap... 69 1e-11
Alignment gi|NP_631903.1| stAR-related lipid transfer protein 4 [Homo sap... 54 2e-07
>ref|NP_000340.2| steroidogenic acute regulatory protein, mitochondrial [Homo sapiens].
Length = 285
Score = 524 bits (1349), Expect = e-149
Identities = 256/285 (89%), Positives = 274/285 (96%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
MLLATFKLCAGSSYRH+RNMKGLR QAV+A+ QELNRRALGGPT +WINQVRRRSSLLG
Sbjct: 1 MLLATFKLCAGSSYRHMRNMKGLRQQAVMAISQELNRRALGGPTPSTWINQVRRRSSLLG 60
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
S+LE+TLYSDQ+LAY+QQGEEAMQ+AL ILSNQEGWKKES+Q+NGD+V+SKV+PDVGKVF
Sbjct: 61 SRLEETLYSDQELAYLQQGEEAMQKALGILSNQEGWKKESQQDNGDKVMSKVVPDVGKVF 120
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVVDQPMERLYEELVERMEAMGEWNP+VK+IK+LQKIGKDT ITHELAAEAAGNLVG
Sbjct: 121 RLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKIGKDTFITHELAAEAAGNLVG 180
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSVRC KRRGS CVLAGMATDFG MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT
Sbjct: 181 PRDFVSVRCAKRRGSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 240
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPK+IINQVLSQTQVDFANHLRKRLES PA EARC
Sbjct: 241 WLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLESHPASEARC 285
>ref|NP_001159410.1| stAR-related lipid transfer protein 3 isoform 3 [Homo sapiens].
Length = 427
Score = 149 bits (376), Expect = 5e-36
Identities = 79/208 (37%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI+QG+EA IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 213 FSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 272
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I+++++A AAG +V PRDFV+V
Sbjct: 273 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNV 332
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + +G+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 333 RRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDL 392
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 393 KGRLPRYLIHQSLAATMFEFAFHLRQRI 420
>ref|NP_001159409.1| stAR-related lipid transfer protein 3 isoform 2 [Homo sapiens].
Length = 445
Score = 149 bits (376), Expect = 5e-36
Identities = 79/208 (37%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI+QG+EA IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 231 FSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 290
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I+++++A AAG +V PRDFV+V
Sbjct: 291 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNV 350
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + +G+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 351 RRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDL 410
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 411 KGRLPRYLIHQSLAATMFEFAFHLRQRI 438
>ref|NP_006795.3| stAR-related lipid transfer protein 3 isoform 1 [Homo sapiens].
Length = 445
Score = 149 bits (376), Expect = 5e-36
Identities = 79/208 (37%), Positives = 125/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI+QG+EA IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 231 FSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP 290
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T+I+++++A AAG +V PRDFV+V
Sbjct: 291 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNV 350
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + +G+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 351 RRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDL 410
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L+ T +FA HLR+R+
Sbjct: 411 KGRLPRYLIHQSLAATMFEFAFHLRQRI 438
>ref|NP_631910.1| stAR-related lipid transfer protein 6 [Homo sapiens].
Length = 220
Score = 72.4 bits (176), Expect = 8e-13
Identities = 46/191 (24%), Positives = 92/191 (48%), Gaps = 3/191 (1%)
Frame = +3
Query: 474 EEAMQRALDILSNQEGWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEEL 647
++ Q L + GWK K S++ S+ G ++R+E ++ + +L + L
Sbjct: 8 QQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFH--GNLYRVEGIIPESPAKLSDFL 65
Query: 648 VERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR-RGSV 824
+ + + W+ S++ ++ +I DT I H + A + PRDF+ + KR G++
Sbjct: 66 YQTGDRI-TWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDFIDLVYIKRYEGNM 124
Query: 825 CVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTII 1004
+++ + DF E P IR + P V P+ +P+ +KL + +++G L +II
Sbjct: 125 NIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFVQTEMRGKLSPSII 184
Query: 1005 NQVLSQTQVDF 1037
+ + V+F
Sbjct: 185 EKTMPSNLVNF 195
>ref|NP_871629.1| stAR-related lipid transfer protein 5 [Homo sapiens].
Length = 213
Score = 68.6 bits (166), Expect = 1e-11
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 5/205 (2%)
Frame = +3
Query: 465 QQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDV---GKVFRLEVVVDQPMERL 635
Q E ++ L + GWK R+ NG V + P V G ++R E +V +E +
Sbjct: 8 QMSEAVAEKMLQYRRDTAGWKI-CREGNGVSVSWR--PSVEFPGNLYRGEGIVYGTLEEV 64
Query: 636 YEELVERMEAMG-EWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR 812
++ + + + +W+ +V +I+Q I ++ AA L+ PRDFV + KR
Sbjct: 65 WDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKR 124
Query: 813 RGSVCVLAGMA-TDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWL 989
+ + + P + G +R + P PL G P+KT L DL G+L
Sbjct: 125 YEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYL 184
Query: 990 PKTIINQVLSQTQVDFANHLRKRLE 1064
P+ +++ ++ F +L+K ++
Sbjct: 185 PQNVVDSFFPRSMTRFYANLQKAVK 209
>ref|NP_631903.1| stAR-related lipid transfer protein 4 [Homo sapiens].
Length = 205
Score = 54.3 bits (129), Expect = 2e-07
Identities = 37/180 (20%), Positives = 81/180 (45%)
Frame = +3
Query: 522 WKKESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIK 701
W+K S + NG +++ + V+D + + + + +W+ + +
Sbjct: 41 WRKPSEEFNG------------YLYKAQGVIDDLVYSIIDH-IRPGPCRLDWDSLMTSLD 87
Query: 702 ILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGV 881
IL+ ++ + A N++ PR+FV T + G++ D+ E ++
Sbjct: 88 ILENFEENCCVMRYTTAGQLWNIISPREFVDFSYTVGYKEGLLSCGISLDWDE--KRPEF 145
Query: 882 IRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRL 1061
+R + P PL +P+++ LT + DL+G +P++ ++ ++ T +F LRK L
Sbjct: 146 VRGYNHPCGWFCVPLKDNPNQSLLTGYIQTDLRGMIPQSAVDTAMASTLTNFYGDLRKAL 205
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,136,148
Number of extensions: 1357600
Number of successful extensions: 5376
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5360
Number of HSP's successfully gapped: 7
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001094
(1236 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035615.2| steroidogenic acute regulatory protein, mitocho... 502 e-142
Alignment gi|NP_067522.1| stAR-related lipid transfer protein 3 [Mus musc... 145 8e-35
Alignment gi|NP_075866.2| stAR-related lipid transfer protein 5 [Mus musc... 71 2e-12
Alignment gi|NP_083295.1| stAR-related lipid transfer protein 6 [Mus musc... 70 3e-12
Alignment gi|NP_598535.1| stAR-related lipid transfer protein 4 [Mus musc... 54 3e-07
>ref|NP_035615.2| steroidogenic acute regulatory protein, mitochondrial precursor [Mus
musculus].
Length = 284
Score = 502 bits (1292), Expect = e-142
Identities = 248/285 (87%), Positives = 269/285 (94%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
M LATFKLCAGSSYRH+RNMKGLRHQAVLA+GQELN RALG + G W+ QVRRRSSLLG
Sbjct: 1 MFLATFKLCAGSSYRHMRNMKGLRHQAVLAIGQELNWRALGDSSPG-WMGQVRRRSSLLG 59
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
SQLE TLYSDQ+L+YIQQGE AMQ+AL IL+NQEGWKKES+QENGDEVLSK++PDVGKVF
Sbjct: 60 SQLEATLYSDQELSYIQQGEVAMQKALGILNNQEGWKKESQQENGDEVLSKMVPDVGKVF 119
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVVDQPM+RLYEELV+RMEAMGEWNP+VK+IK+LQ+IGKDTVITHELAA AAGNLVG
Sbjct: 120 RLEVVVDQPMDRLYEELVDRMEAMGEWNPNVKEIKVLQRIGKDTVITHELAAAAAGNLVG 179
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSVRCTKRRGS CVLAGMAT FGEMPEQ GVIRAEHGPTCMVLHPLAGSPSKTKLT
Sbjct: 180 PRDFVSVRCTKRRGSTCVLAGMATHFGEMPEQSGVIRAEHGPTCMVLHPLAGSPSKTKLT 239
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPKTIINQVLSQTQ++FANHLRKRLE+ PA EA+C
Sbjct: 240 WLLSIDLKGWLPKTIINQVLSQTQIEFANHLRKRLEASPASEAQC 284
>ref|NP_067522.1| stAR-related lipid transfer protein 3 [Mus musculus].
Length = 446
Score = 145 bits (365), Expect = 8e-35
Identities = 77/208 (37%), Positives = 124/208 (59%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S Q+ YI+QG+EA IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 232 FSAQEREYIRQGKEATAVVDQILAQEENWKFERSNEYGDTVYTIEVPFHGKTFILKTFLP 291
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T++++++++ AAG +V PRDFV+V
Sbjct: 292 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLVSYDVSSGAAGGVVSPRDFVNV 351
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + +G+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 352 RRIERRRDRYLSSGIATTHCSKPPTHKYVRGENGPGGFIVLKSANNPRVCTFVWILNTDL 411
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+Q L T +FA HLR+R+
Sbjct: 412 KGRLPRYLIHQSLGATMFEFAFHLRQRV 439
>ref|NP_075866.2| stAR-related lipid transfer protein 5 [Mus musculus].
Length = 213
Score = 71.2 bits (173), Expect = 2e-12
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 3/200 (1%)
Frame = +3
Query: 465 QQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDV-GKVFRLEVVVDQPMERLYE 641
Q+ E ++ L + GWKK R+ NG + + + G ++R E ++ E +++
Sbjct: 8 QESEAVAEKVLRYRRDASGWKK-CREGNGVSISWRPSEEFPGNLYRGEGILCGTPEEVWD 66
Query: 642 ELVERMEAMGE-WNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKRRG 818
+ + E W+ +V +I+Q I ++ AA L+ PRDFV + K+
Sbjct: 67 CIKPVASGLREKWDDNVSSFEIVQSITDMLCVSRTSTPSAAMKLISPRDFVDLVLVKKYE 126
Query: 819 SVCVLAGMA-TDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPK 995
+ + + P + G +R + P PL G P+KT L DL G+LP+
Sbjct: 127 DGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGDPNKTNLVTFFQTDLSGYLPQ 186
Query: 996 TIINQVLSQTQVDFANHLRK 1055
++++ ++ +F +L+K
Sbjct: 187 SVVDSFFPRSMAEFYPNLQK 206
>ref|NP_083295.1| stAR-related lipid transfer protein 6 [Mus musculus].
Length = 233
Score = 70.5 bits (171), Expect = 3e-12
Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 8/211 (3%)
Frame = +3
Query: 480 AMQRALDILS-NQE--GWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEE 644
A Q A +L+ NQ+ GWK K S++ S++ G ++R+E ++ + L +
Sbjct: 7 AQQTAEQVLAYNQDLSGWKLIKSSKKVTVSSKTSRIFH--GNLYRVEGIIPESAAHLSDF 64
Query: 645 LVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVS-VRCTKRRGS 821
L + + W+ S+K ++ KI DT+I H + A + PRDF+ V +
Sbjct: 65 LFKHDHRVS-WDKSLKGFNVIHKIDSDTLICHTITQSFAMGSISPRDFIDLVHIKHYERN 123
Query: 822 VCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTI 1001
V +++ + DF IR + P+ V PL +P+ +KL + ++KG LP ++
Sbjct: 124 VDIISTKSVDFPGYAPTSTYIRGFNHPSGYVCSPLKENPAYSKLVIFVQTEMKGKLPASV 183
Query: 1002 INQVLSQTQVDFANHLRKRLESR--PALEAR 1088
I + + V F +++ +++ P + AR
Sbjct: 184 IEKSMPSNLVSFLLNVKDGVKTYRIPPIRAR 214
>ref|NP_598535.1| stAR-related lipid transfer protein 4 [Mus musculus].
Length = 224
Score = 53.9 bits (128), Expect = 3e-07
Identities = 37/180 (20%), Positives = 82/180 (45%)
Frame = +3
Query: 522 WKKESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIK 701
W+K S + NG +++ + V+D + + + + + +W+ + +
Sbjct: 57 WRKPSEEFNG------------YLYKAQGVMDDVVNNVIDHIRPGPWRL-DWDRLMTSLD 103
Query: 702 ILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGV 881
+L+ ++ + A N++ PR+FV T + G++ ++ E +
Sbjct: 104 VLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSETRPE--F 161
Query: 882 IRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRL 1061
+R + P PL SPS++ LT + DL+G +P++ ++ ++ T +F + LRK L
Sbjct: 162 VRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLRKGL 221
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,777,494
Number of extensions: 1134426
Number of successful extensions: 4055
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4045
Number of HSP's successfully gapped: 5
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001094
(1236 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998920.2| steroidogenic acute regulatory protein, mitocho... 568 e-162
Alignment gi|NP_001137197.1| stAR-related lipid transfer protein 3 [Sus s... 149 2e-36
Alignment gi|XP_003128497.1| PREDICTED: stAR-related lipid transfer prote... 65 6e-11
Alignment gi|NP_001137198.1| stAR-related lipid transfer protein 4 [Sus s... 59 4e-09
Alignment gi|XP_001925046.2| PREDICTED: stAR-related lipid transfer prote... 56 4e-08
>ref|NP_998920.2| steroidogenic acute regulatory protein, mitochondrial precursor [Sus
scrofa].
Length = 285
Score = 568 bits (1464), Expect = e-162
Identities = 285/285 (100%), Positives = 285/285 (100%)
Frame = +3
Query: 237 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 416
MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG
Sbjct: 1 MLLATFKLCAGSSYRHVRNMKGLRHQAVLALGQELNRRALGGPTSGSWINQVRRRSSLLG 60
Query: 417 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 596
SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF
Sbjct: 61 SQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVF 120
Query: 597 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 776
RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG
Sbjct: 121 RLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVG 180
Query: 777 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 956
PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT
Sbjct: 181 PRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLT 240
Query: 957 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 1091
WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC
Sbjct: 241 WLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLESRPALEARC 285
>ref|NP_001137197.1| stAR-related lipid transfer protein 3 [Sus scrofa].
Length = 436
Score = 149 bits (377), Expect = 2e-36
Identities = 78/208 (37%), Positives = 126/208 (60%)
Frame = +3
Query: 438 YSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDVGKVFRLEVVVD 617
+S QD YI+QG+EAM IL+ +E WK E E GD V + +P GK F L+ +
Sbjct: 228 FSAQDREYIRQGKEAMAVVDQILAQEENWKFEKTNEYGDTVYTIEVPFHGKTFILKTFLP 287
Query: 618 QPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSV 797
P E +Y+E++ + E M WN +V +ILQ++ +T++++++++ AAG +V PRDFV+V
Sbjct: 288 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLVSYDVSSGAAGGVVSPRDFVNV 347
Query: 798 RCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
R +RR + +G+AT P +R E+GP ++ A +P W+L+ DL
Sbjct: 348 RRIERRRDRYLSSGIATTHCAKPPTHRYVRGENGPGGFIVLKAASNPRVCTFVWILNTDL 407
Query: 978 KGWLPKTIINQVLSQTQVDFANHLRKRL 1061
KG LP+ +I+ +L+ T +FA HLR+R+
Sbjct: 408 KGRLPRYLIHHILAATMFEFAFHLRQRV 435
>ref|XP_003128497.1| PREDICTED: stAR-related lipid transfer protein 5-like [Sus scrofa].
Length = 213
Score = 65.5 bits (158), Expect = 6e-11
Identities = 47/202 (23%), Positives = 93/202 (46%), Gaps = 5/202 (2%)
Frame = +3
Query: 474 EEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPDV---GKVFRLEVVVDQPMERLYEE 644
E ++ L ++ GWK R+ NG V + P V G ++R E +V+ +E++++
Sbjct: 11 EAVAEKMLQYRQDKSGWKI-CREGNGVSVSWR--PSVEFPGNLYRGEGIVNGTLEQVWDC 67
Query: 645 LVERMEAMGE-WNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKRRGS 821
+ + + W+ +V +I++ I ++ AA L+ PRDFV + ++
Sbjct: 68 IKPLAGTLRDKWDENVAGFEIIESITDTLCVSRTTTPSAAMKLISPRDFVDLVLVRKYED 127
Query: 822 VCVLAGMAT-DFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKT 998
+ + + P + G +R + P PL G P KT L DL G+LP+
Sbjct: 128 GTISSNATNVEHPLCPPKPGYVRGFNHPCGCFCAPLPGEPGKTSLVTFFQTDLSGYLPQG 187
Query: 999 IINQVLSQTQVDFANHLRKRLE 1064
+++ ++ F +L+K ++
Sbjct: 188 VVDSFFPRSMAGFYANLQKAVK 209
>ref|NP_001137198.1| stAR-related lipid transfer protein 4 [Sus scrofa].
Length = 208
Score = 59.3 bits (142), Expect = 4e-09
Identities = 43/221 (19%), Positives = 100/221 (45%)
Frame = +3
Query: 402 SSLLGSQLEDTLYSDQDLAYIQQGEEAMQRALDILSNQEGWKKESRQENGDEVLSKVIPD 581
+++L ++L++TL + E+ R + + W+K S + NG
Sbjct: 7 AAVLATRLKNTLLQYHSI------EDDKWRVAKKMKDVTIWRKPSEEFNGH--------- 51
Query: 582 VGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAA 761
+F+ + V+D + + + + +W+ + + IL+ ++ + A
Sbjct: 52 ---LFKAQGVIDDVVNNVIDH-IRPGPCRLDWDSLMTSLDILEHFEENCCVMRYTTAGQL 107
Query: 762 GNLVGPRDFVSVRCTKRRGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPS 941
N++ PR+FV T + G++ D+ E ++ +R + P PL +P+
Sbjct: 108 WNIISPREFVDFSYTVGYEEGLLSCGISLDWSE--KRSEFVRGYNHPCGWFCVPLKDNPN 165
Query: 942 KTKLTWLLSIDLKGWLPKTIINQVLSQTQVDFANHLRKRLE 1064
++ LT + DL+G +P++ ++ ++ T ++F L+K L+
Sbjct: 166 RSLLTGYIQTDLRGMIPQSAVDTAMASTLINFYGDLQKALQ 206
>ref|XP_001925046.2| PREDICTED: stAR-related lipid transfer protein 6-like [Sus scrofa].
Length = 189
Score = 56.2 bits (134), Expect = 4e-08
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 3/176 (1%)
Frame = +3
Query: 459 YIQQGEEAMQRALDILSNQEGWK--KESRQENGDEVLSKVIPDVGKVFRLEVVVDQPMER 632
Y ++ Q L + GWK K S++ SK G ++R+E V+ + +
Sbjct: 3 YKALAQQTAQEILGYYQDTSGWKLNKTSKKITVASKASKKFH--GNLYRVEGVIPESTSK 60
Query: 633 LYEELVERMEAMGEWNPSVKKIKILQKIGKDTVITHELAAEAAGNLVGPRDFVSVRCTKR 812
L + L + E W+ S+K ++QKI D I H + A + PRDF+ + K
Sbjct: 61 LSDFLC-KPENRVTWDKSLKVCNMVQKIDSDMFICHTITQSFAMGSISPRDFIDLVYLKH 119
Query: 813 -RGSVCVLAGMATDFGEMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDL 977
G++ V+ + +F P IR + + PL +P+ +KL + ++
Sbjct: 120 YEGNMDVIISTSVNFPGCPPSSSYIRGYNHCCGYICSPLQENPAHSKLVMFVQTEM 175
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,051,900
Number of extensions: 975173
Number of successful extensions: 3367
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3360
Number of HSP's successfully gapped: 5
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001094
(1236 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 432 e-118
Sscrofa_Chr11 94 2e-16
Sscrofa_Chr06 94 2e-16
Sscrofa_Chr03 94 2e-16
gb|GL894908.2| Sus scrofa unplaced genomic scaffold ChrUScaf2792 92 9e-16
Sscrofa_ChrX 92 9e-16
Sscrofa_Chr16 92 9e-16
Sscrofa_Chr14 92 9e-16
Sscrofa_Chr13 92 9e-16
Sscrofa_Chr10 92 9e-16
>Sscrofa_Chr15
|| Length = 157681621
Score = 432 bits (218), Expect = e-118
Identities = 252/260 (96%), Gaps = 3/260 (1%)
Strand = Plus / Plus
Query: 979 agggatggctgccgaagaccattataaaccaggtcctatcacagacccaggtggactttg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55508194 agggatggctgccgaagaccattataaaccaggtcctatcacagacccaggtggactttg 55508253
Query: 1039 ccaatcacctgcgaaagcgcctggagtcccgccctgctctggaagccaggtg-taaagct 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 55508254 ccaatcacctgcgaaagcgcctggagtcccgccctgctctggaagccaggtgttaaagct 55508313
Query: 1098 cagcccgccactgccgaaggcttctggcttgcaggctaatgaaaagattccagctggaag 1157
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 55508314 cagcccgccactgccgaaggcttctggcttgcaggctaatgaagagattccagctggaag 55508373
Query: 1158 ccctgc-agactgttaaagaacttcatctggggacagtgggatgttgcantggtgggtgt 1216
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 55508374 -cctgcaagactgttaaagaacttcatctggggacagtgggatgttgcagtggtgtgtgt 55508432
Query: 1217 cnaatatgatacccgaactc 1236
| ||||||||||| ||||||
Sbjct: 55508433 cgaatatgataccagaactc 55508452
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 113 cacagctgcaggaccagaggccaactctgacaggctcaggaaggacaggagcagccaccc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55502048 cacagctgcaggaccagaggccaactctgacaggctcaggaaggacaggagcagccaccc 55502107
Query: 173 ctgagagcagaggcaaccaagcagcagtacctgtctccaggcctgcctccgctaccagga 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55502108 ctgagagcagaggcaaccaagcagcagtacctgtctccaggcctgcctccgctaccagga 55502167
Query: 233 aacaatgctcctagcgacgtttaagctgtgtgctgggagctcctacagacatgtgcgcaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55502168 aacaatgctcctagcgacgtttaagctgtgtgctgggagctcctacagacatgtgcgcaa 55502227
Query: 293 catgaaggg 301
|||||||||
Sbjct: 55502228 catgaaggg 55502236
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 700 agatcctgcagaagattggaaaagacacagtcatcacccatgagttggctgcagaggcgg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55506345 agatcctgcagaagattggaaaagacacagtcatcacccatgagttggctgcagaggcgg 55506404
Query: 760 caggcaacctcgtggggccccgagactttgtgagtgtgcgctgtaccaagcgccggggtt 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55506405 caggcaacctcgtggggccccgagactttgtgagtgtgcgctgtaccaagcgccggggtt 55506464
Query: 820 ccgtgtgtgtgctggctggcatggccacagactttggagagatgcctgagcagaaggggg 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55506465 ccgtgtgtgtgctggctggcatggccacagactttggagagatgcctgagcagaaggggg 55506524
Query: 880 tcatcag 886
|||||||
Sbjct: 55506525 tcatcag 55506531
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Plus
Query: 541 aggagaatggggacgaggtgctgagtaaagtgatcccagatgtgggcaaggtgttccggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55506077 aggagaatggggacgaggtgctgagtaaagtgatcccagatgtgggcaaggtgttccggc 55506136
Query: 601 tggaggtggtggtggaccagcccatggagaggctttatgaagagcttgtggagcgcatgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55506137 tggaggtggtggtggaccagcccatggagaggctttatgaagagcttgtggagcgcatgg 55506196
Query: 661 aggccatgggcgagtggaaccccagtgtcaagaagatcaag 701
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 55506197 aggccatgggcgagtggaaccccagtgtcaagaagatcaag 55506237
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 414 ggttctcagctggaagacactctctacagtgaccaagatctggcctatatccagcaggga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55504142 ggttctcagctggaagacactctctacagtgaccaagatctggcctatatccagcaggga 55504201
Query: 474 gaggaggccatgcagagggcgctggacatcctcagcaaccaggagggctggaagaaggag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55504202 gaggaggccatgcagagggcgctggacatcctcagcaaccaggagggctggaagaaggag 55504261
Query: 534 agccggcagg 543
||||||||||
Sbjct: 55504262 agccggcagg 55504271
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 300 ggcctgaggcaccaggcggtgctggcccttggacaggagctgaaccggagggccctgggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55503770 ggcctgaggcaccaggcggtgctggcccttggacaggagctgaaccggagggccctgggg 55503829
Query: 360 ggtccaacctcagggtcatggattaaccaggttcgacgtcggagctctcttcttggt 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55503830 ggtccaacctcagggtcatggattaaccaggttcgacgtcggagctctcttcttggt 55503886
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 884 cagagctgagcacggccccacctgcatggtgctccaccctctggctggaagtccctcaaa 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55507619 cagagctgagcacggccccacctgcatggtgctccaccctctggctggaagtccctcaaa 55507678
Query: 944 gaccaaactcacctggctgctcagcattgacctcaagg 981
||||||||||||||||||||||||||||||||||||||
Sbjct: 55507679 gaccaaactcacctggctgctcagcattgacctcaagg 55507716
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21152675 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 21152720
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 7 cttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 124722805 cttcccgtgtggctcacaacataactactcggtgttgcttcta 124722847
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 14057530 ggacttcccatgtggctcacaacataactactcggcattgcttcta 14057485
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||||||||||||| || |||||||||
Sbjct: 57182723 ggacttcctgtgtggctcacaacataactactcagcattgcttcta 57182768
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||| |||| || |||||
Sbjct: 97941066 ggacttcccgtgtggctcacaacataactacttggcgctgtttcta 97941111
Score = 65.9 bits (33), Expect = 5e-08
Identities = 46/49 (93%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 1 tggggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 52977302 tggggacttcctgtgtggcttacaac-taactactcggcgttgcttcta 52977349
Score = 63.9 bits (32), Expect = 2e-07
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggc 39
||||||||| ||||||||||||||||||||||||||
Sbjct: 18733722 ggacttcccatgtggctcacaacataactactcggc 18733757
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 6 acttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 19476644 acttcctgtgtggctcacaacataactactccgagttgcttcta 19476687
Score = 61.9 bits (31), Expect = 8e-07
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgctt 46
||||||||||||||||||||| |||||||||| || |||||||
Sbjct: 4213101 ggacttcccgtgtggctcacagcataactacttggtgttgctt 4213143
Score = 60.0 bits (30), Expect = 3e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 8 ttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 16692329 ttcccatgtggctcacaacataactactcagagttgcttcta 16692288
Score = 60.0 bits (30), Expect = 3e-06
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 5 gacttcccgtgtggctcacaaca-taactactcggcgttgcttcta 49
|||||| |||||||||||||||| |||||||||||| |||||||||
Sbjct: 109785319 gacttctcgtgtggctcacaacattaactactcggcattgcttcta 109785274
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||| |||| ||||||||||||||||||||||| || |||||||||
Sbjct: 110829450 ggacctcccttgtggctcacaacataactactcagctttgcttcta 110829495
>Sscrofa_Chr11
|| Length = 87690581
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Minus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28718409 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 28718363
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttc 47
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80877856 gggacttcccgtgtggctcacaacataactactcggcgttgcttc 80877900
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 29473192 ggacttcccgtgtggctcacaacataactactcggtgttgcttcta 29473237
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11942219 ggacttcctatgtggctcacaacataactactcggcgttgcttcta 11942174
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 29806480 ggacttcccatgtggctcacaacataactactctgcgttgcttcta 29806525
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 35076555 ggacttcccgtgtggctcacaacataactactcagtgttgcttcta 35076510
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 63087705 ggacttcccgtgtggctcacaacataactactcggatttgcttcta 63087750
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 11067325 ggacttcccgtatggctcacaacataactacttggtgttgcttcta 11067370
Score = 63.9 bits (32), Expect = 2e-07
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggc 39
||||||||| ||||||||||||||||||||||||||
Sbjct: 14009925 ggacttcccatgtggctcacaacataactactcggc 14009960
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 13310260 ggacttcccacgtggctcacaacataactactcggcactgcttcta 13310215
>Sscrofa_Chr06
|| Length = 157765593
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79838604 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 79838650
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42080847 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 42080892
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 87135928 ggacttcccgtgtggctcacaacgtaactacttggcgttgcttcta 87135883
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct: 92026497 gggacttcccgtgtggctcacaacataaccactgggcattgcttcta 92026451
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 1831165 ggacttcccgtgtggctcacaacataactgcttggtgttgcttcta 1831120
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 42185861 ggacttcctgtgtggctcacaacataactactcagtgttgcttcta 42185906
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 42302435 ggacttcctgtgtggctcacaacataactactcagtgttgcttcta 42302480
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||| || |||||||||||||| |||||||||
Sbjct: 96174693 ggacttcccgtgtggctcgcagcataactactcggcattgcttcta 96174738
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||| |||||||||||| || |||||||||
Sbjct: 104478291 ggacttcccgtgtggctcaccacataactactcagcattgcttcta 104478336
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 144165721 ggacttcccatgtggctcacaacataactactcagtgttgcttcta 144165676
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 144537147 ggacttcctgtgtggctcacaacataactactcagtgttgcttcta 144537102
Score = 65.9 bits (33), Expect = 5e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
|||||||||||||||||| || |||||||||| ||||||||||||
Sbjct: 75713672 ggacttcccgtgtggctcgcagcataactacttggcgttgcttct 75713716
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactc 36
|||||||||||||||||||||||||||||||||
Sbjct: 104146478 ggacttcccgtgtggctcacaacataactactc 104146446
>Sscrofa_Chr03
|| Length = 144787322
Score = 93.7 bits (47), Expect = 2e-16
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48018646 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 48018692
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102353318 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 102353273
Score = 85.7 bits (43), Expect = 5e-14
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 2 ggggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 19979779 ggggacttcccgtgtggctcacaacataactcctcggcgttgcttct 19979733
Score = 85.7 bits (43), Expect = 5e-14
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 102962533 gggacttcccgtgtggctcacaacataactactcggcgttacttcta 102962579
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 108520350 ggactgcccgtgtggctcacaacataactactcagcgttgcttcta 108520305
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct: 31946268 gggacttcccgtgtggctcacaacgtaacgactcggcgttgcctcta 31946222
Score = 61.9 bits (31), Expect = 8e-07
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 6 acttcccgtgtggctcacaacataactactcggcgttgcttct 48
|||||| |||||||||||||||| |||||||||| ||||||||
Sbjct: 81886676 acttcctgtgtggctcacaacatgactactcggcattgcttct 81886718
Score = 61.9 bits (31), Expect = 8e-07
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgctt 46
|||||||||| |||||||||| ||||||| |||||||||||||
Sbjct: 135159820 ggacttcccgggtggctcacagcataactcctcggcgttgctt 135159862
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||| ||||||||||||| ||| |||| ||||
Sbjct: 57262370 ggacttcccgtgtggctctcaacataactacttggcattgcctcta 57262325
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||| || |||||||| ||||||||||||
Sbjct: 60162210 ggacttcccatgtggctcacagcacaactactcagcgttgcttcta 60162165
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||| || | ||||||||||||||||||||||
Sbjct: 121799511 ggacttcccatgtggctcgcagcgtaactactcggcgttgcttcta 121799556
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||| || ||| |||||||||| |||||||||
Sbjct: 130631952 ggacttcccgtgtggctcgcagcatgactactcggcattgcttcta 130631907
>gb|GL894908.2| Sus scrofa unplaced genomic scaffold ChrUScaf2792
Length = 52973
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41963 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 42008
>Sscrofa_ChrX
|| Length = 144288218
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132052966 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 132052921
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 85726206 ggacttcccgtgtggctcacaacataactactcggcattgcttcta 85726251
Score = 81.8 bits (41), Expect = 8e-13
Identities = 44/45 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 131952177 ggacttcccgtgtggctcacaacataactactcggcattgcttct 131952133
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 76247293 ggacttcccctgtggctcacaacataactactcagcgttgcttcta 76247338
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 78250124 ggacttcccgtgtggcccacaacataactactcagcgttgcttcta 78250169
Score = 71.9 bits (36), Expect = 8e-10
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 10 cccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 68296573 cccgtgtggctcacaacataactacttggcgttgcttcta 68296534
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggc 39
||||||||||||||||||||||||||||||||||||
Sbjct: 82395400 ggacttcccgtgtggctcacaacataactactcggc 82395435
Score = 69.9 bits (35), Expect = 3e-09
Identities = 45/47 (95%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctca-caacataactactcggcgttgcttcta 49
||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 124928939 ggacttcccgtgtggctcaacaacagaactactcggcgttgcttcta 124928893
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct: 27167419 ggactttccatgtggctcacaacataacttctcggcgttgcttcta 27167374
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct: 27369761 ggactttccatgtggctcacaacataacttctcggcgttgcttcta 27369806
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 51970668 ggacttcccctgtggctcacagcataactactcggtgttgcttcta 51970713
Score = 67.9 bits (34), Expect = 1e-08
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 8 ttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 74440651 ttcccttgtggctcacaacataactactcggcattgcttcta 74440610
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct: 86084482 ggacttcccatatggctcacaacataactactcggcattgcttcta 86084527
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 109345881 ggacttcccgtgtggctcacaacataagtacttggcattgcttcta 109345836
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactact 35
||||||||||||||||||||||||||||||||
Sbjct: 53903517 ggacttcccgtgtggctcacaacataactact 53903548
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttc 47
||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 54186682 ggacttcccatgtggctcacagcataactactcggcattgcttc 54186725
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttc 47
||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 54522360 ggacttcccatgtggctcacagcataactactcggcattgcttc 54522403
Score = 63.9 bits (32), Expect = 2e-07
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggc 39
||||||||| ||||||||||||||||||||||||||
Sbjct: 101245579 ggacttcccatgtggctcacaacataactactcggc 101245544
Score = 63.9 bits (32), Expect = 2e-07
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggc 39
||||||||| ||||||||||||||||||||||||||
Sbjct: 120748137 ggacttcccatgtggctcacaacataactactcggc 120748172
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||| || |||| |||||||||||||||||||
Sbjct: 16039221 gggacttcctgtgtggctcgcagcatatctactcggcgttgcttcta 16039175
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||| |||||||| | |||||||||||||
Sbjct: 17555701 ggacttcccatgtggctcacagcataactatttggcgttgcttcta 17555656
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 28524787 ggacttcctgtgtggctcacagcataactactcagcattgcttcta 28524832
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||| ||||||||||||| ||| ||||||
Sbjct: 31857507 ggacttcctgtgtggctcacagcataactactcggtgtttcttcta 31857462
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||| |||||||||| |||||||||| || |||||||||
Sbjct: 42278225 ggacttcccgtttggctcacaaaataactactcagctttgcttcta 42278180
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||| ||||||||||| || |||||||||
Sbjct: 72784310 ggacttcctgtgtggctcacagcataactactcagcattgcttcta 72784355
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||||||||| |||||||||| || |||||||||
Sbjct: 77328089 ggacttcctgtgtggctcacaaaataactactcagcattgcttcta 77328134
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||||||||| |||||||||| || |||||||||
Sbjct: 77488954 ggacttcctgtgtggctcacaaaataactactcagcattgcttcta 77488999
>Sscrofa_Chr16
|| Length = 86898991
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54725495 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 54725540
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54881690 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 54881645
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 39484194 ggacttcccgtgtggctcacaacataactactcggtgttgcttcta 39484149
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 39605699 ggacttcccgtgtggctcacaacataactactcggtgttgcttcta 39605654
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 6 acttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 47376732 acttcccgtgtggctcacaacataactattcggcgttgcttcta 47376775
Score = 79.8 bits (40), Expect = 3e-12
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 6 acttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 47447363 acttcccgtgtggctcacaacataactattcggcgttgcttcta 47447406
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||| |||||||||||||||||||||| |||||| ||||||
Sbjct: 86801231 gggacttcccatgtggctcacaacataactacttggcgttacttcta 86801277
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct: 64179293 ggacttcccgtgtggctcacagcataactacccggcattgcttcta 64179338
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 64673118 ggacttcccgtgtggctcacagcataactacttggtgttgcttcta 64673073
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct: 77231201 ggacttcccgtgtggctcacaacgtaactactcagcattgcttcta 77231156
Score = 63.9 bits (32), Expect = 2e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttg 43
||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 34842033 ggacttcccgtgtggctcacagcataactactcggtgttg 34841994
Score = 63.9 bits (32), Expect = 2e-07
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttg 43
||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 34904235 ggacttcccgtgtggctcacagcataactactcggtgttg 34904196
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactact 35
||||||||||||||||||||||||||||||||
Sbjct: 44921736 ggacttcccgtgtggctcacaacataactact 44921705
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 46897602 ggacttcccgtgcagctcactgcataactactcggcgttgcttcta 46897557
>Sscrofa_Chr14
|| Length = 153851969
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73520486 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 73520441
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 59866027 ggacttcccgtgtggctcacaacataactactcggtgttgcttcta 59865982
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 72480251 ggacttcccgtgtggctcacaacataactactcggtgttgcttcta 72480296
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgctt 46
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 71758555 ggacttcccgtgtggctcacaacataactacttggcgttgctt 71758597
Score = 77.8 bits (39), Expect = 1e-11
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 7 cttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 123029615 cttcccgtgtggctcacaacataactactcgacgttgcttcta 123029573
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 26908049 ggacttcccgtgtggctcacagcataactactcagcgttgcttcta 26908094
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 65002513 ggacttcccatgtggctcacaacataactactcggtgttgcttcta 65002468
Score = 69.9 bits (35), Expect = 3e-09
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgctt 46
||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 65637025 ggacttcccatgtggctcacaacataactgctcggcgttgctt 65636983
Score = 67.9 bits (34), Expect = 1e-08
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 5 gacttcccgtgtggctcacaacataactactcggcgttgctt 46
|||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 28960046 gacttcccatgtggctcacaacataactactcggcattgctt 28960087
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct: 62391659 ggacttcctgtgcggctcacaacataactactcggctttgcttcta 62391704
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||| ||||||||||| ||||||||||
Sbjct: 75539538 ggacttcccatgtggctcacaacttaactactcggtgttgcttcta 75539493
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct: 101573708 ggacttcccatgtggctcacaatataactactcggcgttgtttcta 101573753
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct: 123063244 ggacttcccatgtggctcacaatataactactcagcgttgcttcta 123063199
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct: 123063826 ggacttcccatgtggctcacaatataactactcagcgttgcttcta 123063781
Score = 65.9 bits (33), Expect = 5e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 140345639 ggacttcccgtgtggctcacaacctaactcctcggtgttgcttct 140345683
Score = 61.9 bits (31), Expect = 8e-07
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||| ||||||||| |||||||||||| ||| |||||||||
Sbjct: 89678984 gggacttcccatgtggctcataacataactacttggcattgcttcta 89679030
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||| ||| ||||| || ||||||||||
Sbjct: 14261034 ggacttcccgtgtggctcacaatatatctacttggtgttgcttcta 14260989
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||| ||||| ||||||||||||| |||||||||
Sbjct: 39891823 ggacttcctgtgtggcgcacaatataactactcggcattgcttcta 39891778
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 77910091 ggacttcctgtgtggctcacaacatagctacctggcgttgcttcta 77910046
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||| ||||||||||| | ||||||||||
Sbjct: 88890808 ggacttcctgtgtggctcacagcataactactcagtgttgcttcta 88890853
>Sscrofa_Chr13
|| Length = 218635234
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182202209 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 182202164
Score = 89.7 bits (45), Expect = 3e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71334583 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 71334627
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1 tggggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 137177488 tggggactgcccgtgtggctcacaacataactactcggcgttgcttcta 137177536
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 93912366 ggacttcccgtgtggctcacaacataactactcggcattgcttcta 93912321
Score = 83.8 bits (42), Expect = 2e-13
Identities = 45/46 (97%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 94005207 ggacttcccgtgtggctcacaacataactactcggcattgcttcta 94005162
Score = 81.8 bits (41), Expect = 8e-13
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 193246689 ggacttcccgtgtggctcacaacataactactcggtgttgcttct 193246733
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 7365163 ggacttcccgtgtggctcacaacataactactgggcattgcttcta 7365208
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 8656529 ggacttcccatgtggctcacaacataactactcggcattgcttcta 8656484
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 8854469 ggacttcccatgtggctcacaacataactactcggcattgcttcta 8854424
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 78597976 ggacttcctgtgtggctcacaacgtaactactcggcgttgcttcta 78597931
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 137802054 ggacttcccgtgtggctcacaacataattactcggctttgcttcta 137802099
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 150035458 ggacttcctgtgtggctcacaacataactactctgcgttgcttcta 150035413
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 167140695 ggacttcctgtgtggctcacaacataactactcggcattgcttcta 167140650
Score = 75.8 bits (38), Expect = 5e-11
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 175616002 ggacttcccgtgtggctcacaacataactactcggtgttgtttcta 175615957
Score = 71.9 bits (36), Expect = 8e-10
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 6 acttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 54592346 acttcccatgtggctcacaacataactacttggcgttgcttcta 54592303
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 14 tgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||
Sbjct: 81976644 tgtggctcacaacataactactcggcgttgcttcta 81976679
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct: 146833211 ggacttcccatgtggctcacaacataactacttggcattgcttcta 146833256
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 159322559 ggacttcccatgtggctcacaacataactaatccgcgttgcttcta 159322604
Score = 65.9 bits (33), Expect = 5e-08
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 9 tcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 215194633 tcccgtgtggctcacagcataactcctcggcgttgcttcta 215194593
Score = 63.9 bits (32), Expect = 2e-07
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttc 47
|||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 180267034 ggacttcctgtgtggctcacaacataactactcagcattgcttc 180267077
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||||| | | ||||||||||
Sbjct: 7635484 ggacttcccatgtggctcacaacataactacccagtgttgcttcta 7635439
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||||||||| || ||| |||||||||
Sbjct: 186699900 ggacttcccatgtggctcacaacataacttcttggcattgcttcta 186699945
>Sscrofa_Chr10
|| Length = 79102373
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21214344 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 21214389
Score = 77.8 bits (39), Expect = 1e-11
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 42911477 gggacttccagtgtggctcacaacataactactcagcgttgcttcta 42911523
Score = 75.8 bits (38), Expect = 5e-11
Identities = 45/46 (97%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 5 gacttcccgtgtggctcacaacataac-tactcggcgttgcttcta 49
||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 39500315 gacttcccgtgtggctcacaacataacttactcggcgttgcttcta 39500360
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct: 55540723 gggacttcccttgtggcttacaacataactacgcggcgttgcttcta 55540677
Score = 69.9 bits (35), Expect = 3e-09
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 3 gggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 64874172 gggacttgccgtggggctcacaacataactactcggcattgcttcta 64874126
Score = 65.9 bits (33), Expect = 5e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttct 48
||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct: 77176137 ggacttcccgtgtggctgacaacacaactactcggcattgcttct 77176181
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
||||||||| ||||||||||||| |||||||| || ||||||||||
Sbjct: 30460305 ggacttcccatgtggctcacaacgtaactacttggtgttgcttcta 30460350
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 4 ggacttcccgtgtggctcacaacataactactcggcgttgcttcta 49
|||||||| |||||||||||||||||| ||||| || |||||||||
Sbjct: 54878435 ggacttcctgtgtggctcacaacataattactcagcattgcttcta 54878480
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,640,011
Number of extensions: 1419
Number of successful extensions: 1419
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 1413
Number of HSP's successfully gapped: 312
Length of query: 1236
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1215
Effective length of database: 2,808,413,156
Effective search space: 3412221984540
Effective search space used: 3412221984540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)