Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001097
(1078 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803463.1| farnesyl pyrophosphate synthase [Bos taurus]. 586 e-167
>ref|NP_803463.1| farnesyl pyrophosphate synthase [Bos taurus].
Length = 353
Score = 586 bits (1510), Expect = e-167
Identities = 284/315 (90%), Positives = 302/315 (95%)
Frame = +2
Query: 134 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR 313
MNGDQKLDAYA+ERQDFIQHFSQIVKVLTEEDIGHPEIGDA+ RLKEVLEYN +GGKYNR
Sbjct: 1 MNGDQKLDAYAQERQDFIQHFSQIVKVLTEEDIGHPEIGDAITRLKEVLEYNAIGGKYNR 60
Query: 314 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 493
G+TV++ FRELVEP KQD DSLQRALTVGWC+ELLQAFFLV+DDI DSSLTRRGQTCWY+
Sbjct: 61 GLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQTCWYQ 120
Query: 494 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 673
KPGIGLDAINDAFLLE+ IYRLLK YCREQPYYL+LIELFLQ+SY TEIGQTLDLI PQ
Sbjct: 121 KPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLDLIELFLQSSYQTEIGQTLDLITAPQ 180
Query: 674 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 853
GNVDL RFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHA+AKKIL+EMGEFFQ
Sbjct: 181 GNVDLGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHAHAKKILLEMGEFFQ 240
Query: 854 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVAR 1033
IQDDYLDLFGDPS+TGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQK+AEKVAR
Sbjct: 241 IQDDYLDLFGDPSMTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKEAEKVAR 300
Query: 1034 VKALYEEMNLQAVFL 1078
VKALYEEMNL AV++
Sbjct: 301 VKALYEEMNLSAVYM 315
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,754,141
Number of extensions: 1225010
Number of successful extensions: 7371
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7232
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001097
(1078 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537252.2| PREDICTED: similar to farnesyl diphosphate synt... 585 e-167
Alignment gi|XP_547662.2| PREDICTED: similar to Farnesyl pyrophosphate sy... 420 e-117
Alignment gi|XP_854640.1| PREDICTED: similar to Farnesyl pyrophosphate sy... 326 2e-89
Alignment gi|XP_850024.1| PREDICTED: similar to Farnesyl pyrophosphate sy... 175 8e-44
>ref|XP_537252.2| PREDICTED: similar to farnesyl diphosphate synthase [Canis
familiaris].
Length = 420
Score = 585 bits (1507), Expect = e-167
Identities = 284/322 (88%), Positives = 305/322 (94%)
Frame = +2
Query: 110 RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN 289
RA YSSLRMNGDQKLDAYA+ RQDFIQHF QIVK+LTE+ +GHPE GDA+ARLKEVLEYN
Sbjct: 60 RALYSSLRMNGDQKLDAYAQARQDFIQHFPQIVKILTEDGMGHPETGDAIARLKEVLEYN 119
Query: 290 VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR 469
VGGKY RG+TVL+ F+ELVEPRKQDA SL+RALTVGWC+ELLQAFFLV+DDI DSSLTR
Sbjct: 120 AVGGKYQRGLTVLIAFQELVEPRKQDAASLRRALTVGWCVELLQAFFLVSDDIMDSSLTR 179
Query: 470 RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT 649
RGQ CWY+KPGIGLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQT
Sbjct: 180 RGQICWYQKPGIGLDAINDALLLEACIYRLLKVYCREQPYYLNLIELFLQSSYQTEIGQT 239
Query: 650 LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 829
LDLI PQG+VDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL
Sbjct: 240 LDLITAPQGSVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 299
Query: 830 MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 1009
+EMGEFFQIQDD+LDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQ+ASPEQR++LQENYGQ
Sbjct: 300 LEMGEFFQIQDDFLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQQASPEQRKVLQENYGQ 359
Query: 1010 KDAEKVARVKALYEEMNLQAVF 1075
K+AEKVARVKALYEE+NL AVF
Sbjct: 360 KEAEKVARVKALYEELNLPAVF 381
>ref|XP_547662.2| PREDICTED: similar to Farnesyl pyrophosphate synthetase (FPP
synthetase) (FPS) (Farnesyl diphosphate synthetase)
[Canis familiaris].
Length = 262
Score = 420 bits (1080), Expect = e-117
Identities = 218/304 (71%), Positives = 241/304 (79%)
Frame = +2
Query: 134 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR 313
MNG QKLDAYA+ RQDFIQHF QIVK+LTE+ +GH E+GDA+A+LKEVLEYN VG
Sbjct: 1 MNGAQKLDAYAQARQDFIQHFPQIVKMLTEDGMGHLEMGDAIAQLKEVLEYNAVG----- 55
Query: 314 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 493
ALTVGWC+ELLQAFFLV+DDI DSSLT++GQ CWY+
Sbjct: 56 ------------------------ALTVGWCMELLQAFFLVSDDIMDSSLTQQGQICWYQ 91
Query: 494 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 673
KPGIGLDAINDA LLEACIY LLK YC+EQPYYL+LIELFLQ+SY TEIGQTLDLI PQ
Sbjct: 92 KPGIGLDAINDALLLEACIYCLLKVYCQEQPYYLDLIELFLQSSYQTEIGQTLDLITSPQ 151
Query: 674 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 853
G+VDLSRFTEKRYKSIVK K AFYS YLP+AA KEHANAKKIL+ MGEFFQ
Sbjct: 152 GSVDLSRFTEKRYKSIVKCKMAFYSLYLPMAA----------KEHANAKKILLNMGEFFQ 201
Query: 854 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVAR 1033
IQDD+LDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQ+ASPE+ +ENYGQK+ EKVAR
Sbjct: 202 IQDDFLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQQASPEE---WKENYGQKEPEKVAR 258
Query: 1034 VKAL 1045
VK L
Sbjct: 259 VKVL 262
>ref|XP_854640.1| PREDICTED: similar to Farnesyl pyrophosphate synthetase (FPP
synthetase) (FPS) (Farnesyl diphosphate synthetase)
[Canis familiaris].
Length = 259
Score = 326 bits (836), Expect = 2e-89
Identities = 176/288 (61%), Positives = 198/288 (68%)
Frame = +2
Query: 212 VLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNRGITVLVVFRELVEPRKQDADSLQRAL 391
+LTE+D+GHPE+GDA+ARLKEVLEY VGG SL+RAL
Sbjct: 1 MLTEDDMGHPEMGDAIARLKEVLEYKAVGG------------------------SLRRAL 36
Query: 392 TVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFY 571
+VGWC+ELLQAFFLV+DDI D +LTR GQ CWY+ PGIGLDAINDA L E+CIYRLLK
Sbjct: 37 SVGWCVELLQAFFLVSDDIMDLTLTRWGQICWYQNPGIGLDAINDALLPESCIYRLLK-- 94
Query: 572 CREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSF 751
S KRY +VKYKTAFYSF
Sbjct: 95 ---------------------------------------STVQVKRY--VVKYKTAFYSF 113
Query: 752 YLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNK 931
YLPV A MY+AGIDGEK+HANAKKIL+EMGEFFQ Q D+LDLFGDPSVTGKIGTDIQD K
Sbjct: 114 YLPVVATMYVAGIDGEKDHANAKKILLEMGEFFQFQADFLDLFGDPSVTGKIGTDIQD-K 172
Query: 932 CSWLVVQCLQRASPEQRQILQENYGQKDAEKVARVKALYEEMNLQAVF 1075
C WLVVQCLQ+ASPEQ ++LQENYGQK+ E VARVKALYEE+NL AVF
Sbjct: 173 CIWLVVQCLQQASPEQHKVLQENYGQKETENVARVKALYEELNLPAVF 220
>ref|XP_850024.1| PREDICTED: similar to Farnesyl pyrophosphate synthetase (FPP
synthetase) (FPS) (Farnesyl diphosphate synthetase)
[Canis familiaris].
Length = 175
Score = 175 bits (443), Expect = 8e-44
Identities = 95/151 (62%), Positives = 108/151 (71%)
Frame = +2
Query: 626 YNTEIGQTLDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKE 805
Y T IGQTLDLI QGNVD RFTEK+YKSIVKYKTAFYSFYLPVAAA+YMAGID EKE
Sbjct: 22 YQTVIGQTLDLIRAHQGNVDFGRFTEKKYKSIVKYKTAFYSFYLPVAAAIYMAGIDEEKE 81
Query: 806 HANAKKILMEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQ 985
HA A+ IL EM EFFQIQ++YLDLF DPSVT EQ Q
Sbjct: 82 HAIAEMILPEMREFFQIQENYLDLFRDPSVT-------------------------EQCQ 116
Query: 986 ILQENYGQKDAEKVARVKALYEEMNLQAVFL 1078
IL ENYGQ++A+K +RVK LY+E+N+ AVF+
Sbjct: 117 ILLENYGQREAKKGSRVKLLYKELNIPAVFM 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,601,712
Number of extensions: 1266735
Number of successful extensions: 7387
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7272
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001097
(1078 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129293.1| farnesyl pyrophosphate synthase isoform a [H... 583 e-167
Alignment gi|NP_001995.1| farnesyl pyrophosphate synthase isoform a [Homo... 583 e-167
Alignment gi|NP_001229753.1| farnesyl pyrophosphate synthase isoform b [H... 574 e-164
Alignment gi|NP_001129294.1| farnesyl pyrophosphate synthase isoform b [H... 574 e-164
Alignment gi|NP_001229754.1| farnesyl pyrophosphate synthase isoform c [H... 391 e-109
>ref|NP_001129293.1| farnesyl pyrophosphate synthase isoform a [Homo sapiens].
Length = 419
Score = 583 bits (1503), Expect = e-167
Identities = 282/323 (87%), Positives = 305/323 (94%)
Frame = +2
Query: 110 RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN 289
RA SSLRMNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDA+ARLKEVLEYN
Sbjct: 59 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN 118
Query: 290 VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR 469
+GGKYNRG+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTR
Sbjct: 119 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR 178
Query: 470 RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT 649
RGQ CWY+KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQT
Sbjct: 179 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 238
Query: 650 LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 829
LDL+ PQGNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL
Sbjct: 239 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 298
Query: 830 MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 1009
+EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA+PEQ QIL+ENYGQ
Sbjct: 299 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 358
Query: 1010 KDAEKVARVKALYEEMNLQAVFL 1078
K+AEKVARVKALYEE++L AVFL
Sbjct: 359 KEAEKVARVKALYEELDLPAVFL 381
>ref|NP_001995.1| farnesyl pyrophosphate synthase isoform a [Homo sapiens].
Length = 419
Score = 583 bits (1503), Expect = e-167
Identities = 282/323 (87%), Positives = 305/323 (94%)
Frame = +2
Query: 110 RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN 289
RA SSLRMNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDA+ARLKEVLEYN
Sbjct: 59 RALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYN 118
Query: 290 VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR 469
+GGKYNRG+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTR
Sbjct: 119 AIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTR 178
Query: 470 RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT 649
RGQ CWY+KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQT
Sbjct: 179 RGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQT 238
Query: 650 LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 829
LDL+ PQGNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL
Sbjct: 239 LDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKIL 298
Query: 830 MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 1009
+EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA+PEQ QIL+ENYGQ
Sbjct: 299 LEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 358
Query: 1010 KDAEKVARVKALYEEMNLQAVFL 1078
K+AEKVARVKALYEE++L AVFL
Sbjct: 359 KEAEKVARVKALYEELDLPAVFL 381
>ref|NP_001229753.1| farnesyl pyrophosphate synthase isoform b [Homo sapiens].
Length = 353
Score = 574 bits (1479), Expect = e-164
Identities = 276/315 (87%), Positives = 299/315 (94%)
Frame = +2
Query: 134 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR 313
MNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDA+ARLKEVLEYN +GGKYNR
Sbjct: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60
Query: 314 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 493
G+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTRRGQ CWY+
Sbjct: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120
Query: 494 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 673
KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL+ PQ
Sbjct: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180
Query: 674 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 853
GNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL+EMGEFFQ
Sbjct: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240
Query: 854 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVAR 1033
IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA+PEQ QIL+ENYGQK+AEKVAR
Sbjct: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300
Query: 1034 VKALYEEMNLQAVFL 1078
VKALYEE++L AVFL
Sbjct: 301 VKALYEELDLPAVFL 315
>ref|NP_001129294.1| farnesyl pyrophosphate synthase isoform b [Homo sapiens].
Length = 353
Score = 574 bits (1479), Expect = e-164
Identities = 276/315 (87%), Positives = 299/315 (94%)
Frame = +2
Query: 134 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR 313
MNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDA+ARLKEVLEYN +GGKYNR
Sbjct: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60
Query: 314 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 493
G+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTRRGQ CWY+
Sbjct: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120
Query: 494 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 673
KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL+ PQ
Sbjct: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180
Query: 674 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 853
GNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL+EMGEFFQ
Sbjct: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240
Query: 854 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVAR 1033
IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA+PEQ QIL+ENYGQK+AEKVAR
Sbjct: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300
Query: 1034 VKALYEEMNLQAVFL 1078
VKALYEE++L AVFL
Sbjct: 301 VKALYEELDLPAVFL 315
>ref|NP_001229754.1| farnesyl pyrophosphate synthase isoform c [Homo sapiens].
Length = 248
Score = 391 bits (1004), Expect = e-109
Identities = 189/209 (90%), Positives = 200/209 (95%)
Frame = +2
Query: 452 DSSLTRRGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYN 631
DSSLTRRGQ CWY+KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY
Sbjct: 2 DSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQ 61
Query: 632 TEIGQTLDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHA 811
TEIGQTLDL+ PQGNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHA
Sbjct: 62 TEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHA 121
Query: 812 NAKKILMEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQIL 991
NAKKIL+EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA+PEQ QIL
Sbjct: 122 NAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQIL 181
Query: 992 QENYGQKDAEKVARVKALYEEMNLQAVFL 1078
+ENYGQK+AEKVARVKALYEE++L AVFL
Sbjct: 182 KENYGQKEAEKVARVKALYEELDLPAVFL 210
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,767,136
Number of extensions: 1237048
Number of successful extensions: 7295
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7190
Number of HSP's successfully gapped: 5
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001097
(1078 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_608219.1| farnesyl pyrophosphate synthase [Mus musculus]. 559 e-159
>ref|NP_608219.1| farnesyl pyrophosphate synthase [Mus musculus].
Length = 353
Score = 559 bits (1440), Expect = e-159
Identities = 267/314 (85%), Positives = 297/314 (94%)
Frame = +2
Query: 134 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVGGKYNR 313
MNG+QKLDAY +E+Q+FIQHFSQIVKVLTE+++GHPEIGDA+ARLKEVLEYN +GGKYNR
Sbjct: 1 MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNR 60
Query: 314 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 493
G+TV+ F+ELVEP+KQDA+SLQRALTVGWC+ELLQAFFLV+DDI DSSLTRRGQ CWY+
Sbjct: 61 GLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQ 120
Query: 494 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 673
KPGIGLDAINDA LLEA IYRLLKFYCREQPYYLNL+ELFLQ+SY TEIGQTLDL+ PQ
Sbjct: 121 KPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQ 180
Query: 674 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 853
G+VDL R+TEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANA KILMEMGEFFQ
Sbjct: 181 GHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANALKILMEMGEFFQ 240
Query: 854 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDAEKVAR 1033
+QDDYLDLFGDPSVTGK+GTDIQDNKCSWLVVQCL RASP+QRQIL+ENYGQKD EKVAR
Sbjct: 241 VQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRASPQQRQILEENYGQKDPEKVAR 300
Query: 1034 VKALYEEMNLQAVF 1075
VKALYE ++LQ+ F
Sbjct: 301 VKALYEALDLQSAF 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,185,028
Number of extensions: 1032828
Number of successful extensions: 5630
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5491
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001097
(1078 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172060.1| farnesyl pyrophosphate synthase [Sus scrofa]. 649 0.0
>ref|NP_001172060.1| farnesyl pyrophosphate synthase [Sus scrofa].
Length = 421
Score = 649 bits (1673), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Frame = +2
Query: 110 RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN 289
RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN
Sbjct: 61 RAFYSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYN 120
Query: 290 VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR 469
VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR
Sbjct: 121 VVGGKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTR 180
Query: 470 RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT 649
RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT
Sbjct: 181 RGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQT 240
Query: 650 LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 829
LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL
Sbjct: 241 LDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL 300
Query: 830 MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 1009
MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ
Sbjct: 301 MEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQ 360
Query: 1010 KDAEKVARVKALYEEMNLQAVFL 1078
KDAEKVARVKALYEEMNLQAVFL
Sbjct: 361 KDAEKVARVKALYEEMNLQAVFL 383
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,917,357
Number of extensions: 788052
Number of successful extensions: 4818
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4680
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001097
(1078 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 333 1e-88
>Sscrofa_Chr04
|| Length = 143465943
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Minus
Query: 109 cagagcattttactcctccctcagaatgaacggagaccagaaattggacgcttatgcccg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303545 cagagcattttactcctccctcagaatgaacggagaccagaaattggacgcttatgcccg 103303486
Query: 169 agaaaggcaggatttcatccagcacttctcccagatcgtcaaggtgctgactgaggagga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303485 agaaaggcaggatttcatccagcacttctcccagatcgtcaaggtgctgactgaggagga 103303426
Query: 229 catcgggcacccagagataggagatgctgttgcccgactcaaggaggt 276
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303425 catcgggcacccagagataggagatgctgttgcccgactcaaggaggt 103303378
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 273 aggttctggagtacaatgttgtcggaggcaagtacaaccgaggtatcacggtgctggtgg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103301782 aggttctggagtacaatgttgtcggaggcaagtacaaccgaggtatcacggtgctggtgg 103301723
Query: 333 tgttccgggagctggtggagcccaggaagcaggatgctgatagtctccagcgggccctga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103301722 tgttccgggagctggtggagcccaggaagcaggatgctgatagtctccagcgggccctga 103301663
Query: 393 ccgtgggctggtgtattgaactg 415
|||||||||||||||||||||||
Sbjct: 103301662 ccgtgggctggtgtattgaactg 103301640
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 857 caggacgattacctcgacctctttggggaccccagcgtgacaggcaagatcggcacagac 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103292662 caggacgattacctcgacctctttggggaccccagcgtgacaggcaagatcggcacagac 103292603
Query: 917 atccaggacaacaagtgcagctggctggtggttcagtgtctgcagcgggcctctccggag 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103292602 atccaggacaacaagtgcagctggctggtggttcagtgtctgcagcgggcctctccggag 103292543
Query: 977 cagcgccaaatcctgcagg 995
|||||||||||||||||||
Sbjct: 103292542 cagcgccaaatcctgcagg 103292524
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 495 agccaggtataggtttggatgccatcaatgatgctttccttctggaagcttgtatctacc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103294472 agccaggtataggtttggatgccatcaatgatgctttccttctggaagcttgtatctacc 103294413
Query: 555 gcctgctgaagttctactgccgggagcagccctattacctgaacctgattgagctcttct 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103294412 gcctgctgaagttctactgccgggagcagccctattacctgaacctgattgagctcttct 103294353
Query: 615 tgcag 619
|||||
Sbjct: 103294352 tgcag 103294348
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1 tagcgaaaagagatggagaactactagtcccagagagctgagcgttgaggagtccggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103304930 tagcgaaaagagatggagaactactagtcccagagagctgagcgttgaggagtccggttt 103304871
Query: 61 ttaggcataccccagcaattctctggatccacaaccggcatccaggaacag 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103304870 ttaggcataccccagcaattctctggatccacaaccggcatccaggaacag 103304820
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 617 cagacttcctacaacactgagatcggacagaccctggacctcatcgccggcccccagggc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103293742 cagacttcctacaacactgagatcggacagaccctggacctcatcgccggcccccagggc 103293683
Query: 677 aacgtggatcttagcaggttcactgaaaagaggt 710
||||||||||||||||||||||||||||||||||
Sbjct: 103293682 aacgtggatcttagcaggttcactgaaaagaggt 103293649
Score = 165 bits (83), Expect = 6e-38
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 992 caggagaactatgggcagaaggatgctgaaaaggtggcccgggtgaaggcgctgtatgag 1051
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 103292055 caggagaactatgggcagaaggatgctgagaaggtggcccgggtgaaggcgctgtatgag 103291996
Query: 1052 gagatgaatctgcaggcagtgttcctg 1078
|||||||||||||||||||||||||||
Sbjct: 103291995 gagatgaatctgcaggcagtgttcctg 103291969
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 415 gctccaagccttcttcctggtggcagacgacatcgaggactcctccctcacccgccgggg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103294692 gctccaagccttcttcctggtggcagacgacatcgaggactcctccctcacccgccgggg 103294633
Query: 475 ccagacctgctggtatcggaag 496
||||||||||||||||||||||
Sbjct: 103294632 ccagacctgctggtatcggaag 103294611
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 781 ggcaggcattgacggggagaaggagcacgccaatgccaagaagatcctgatggagatggg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103292837 ggcaggcattgacggggagaaggagcacgccaatgccaagaagatcctgatggagatggg 103292778
Query: 841 agagttctttcagattcagg 860
||||||||||||||||||||
Sbjct: 103292777 agagttctttcagattcagg 103292758
Score = 151 bits (76), Expect = 9e-34
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 707 aggtacaagtctattgtcaagtacaagacagctttctactctttctacctgcccgtggct 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103293547 aggtacaagtctattgtcaagtacaagacagctttctactctttctacctgcccgtggct 103293488
Query: 767 gctgccatgtatatgg 782
||||||||||||||||
Sbjct: 103293487 gctgccatgtatatgg 103293472
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,767,619
Number of extensions: 146
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 10
Length of query: 1078
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1057
Effective length of database: 2,808,413,156
Effective search space: 2968492705892
Effective search space used: 2968492705892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)