Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001127
(1674 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103977.1| hemoglobin, epsilon 1 [Bos taurus]. 246 3e-65
Alignment gi|NP_776342.1| hemoglobin subunit beta [Bos taurus]. 245 7e-65
Alignment gi|NP_001014902.1| hemoglobin fetal subunit beta [Bos taurus]. 243 5e-64
Alignment gi|NP_001103979.1| hemoglobin, gamma 2 [Bos taurus]. 243 5e-64
Alignment gi|XP_002693271.1| PREDICTED: hemoglobin fetal subunit beta-lik... 239 4e-63
Alignment gi|XP_001252211.2| PREDICTED: hemoglobin fetal subunit beta-lik... 239 4e-63
Alignment gi|XP_001250142.2| PREDICTED: hemoglobin fetal subunit beta-lik... 239 4e-63
Alignment gi|XP_001249460.2| PREDICTED: hemoglobin fetal subunit beta-lik... 239 4e-63
Alignment gi|NP_001014910.1| hemoglobin subunit epsilon-4 [Bos taurus]. 216 4e-56
Alignment gi|NP_001014913.1| hemoglobin subunit epsilon-2 [Bos taurus]. 208 1e-53
>ref|NP_001103977.1| hemoglobin, epsilon 1 [Bos taurus].
Length = 147
Score = 246 bits (629), Expect = 3e-65
Identities = 115/147 (78%), Positives = 132/147 (89%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVH +AEEK A+ GLWGKVNV+E GGEALGRLLVVYPWTQRFF+SFG+LS+A A+MGNPK
Sbjct: 1 MVHFTAEEKAAITGLWGKVNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL SF + +K+LDNLKG FAKLSELHCD+LHVDPENFRLLGNVIV++LA G
Sbjct: 61 VKAHGKKVLTSFGEAIKNLDNLKGAFAKLSELHCDKLHVDPENFRLLGNVIVIILATHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F PDVQAA+QK+V+GVA ALAHKYH
Sbjct: 121 REFTPDVQAAWQKLVSGVATALAHKYH 147
>ref|NP_776342.1| hemoglobin subunit beta [Bos taurus].
Length = 145
Score = 245 bits (626), Expect = 7e-65
Identities = 119/144 (82%), Positives = 129/144 (89%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
L+AEEK AV WGKV VDEVGGEALGRLLVVYPWTQRFFESFGDLS ADAVM NPKVKA
Sbjct: 2 LTAEEKAAVTAFWGKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSTADAVMNNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SFS+G+KHLD+LKGTFA LSELHCD+LHVDPENF+LLGNV+VVVLAR G +F
Sbjct: 62 HGKKVLDSFSNGMKHLDDLKGTFAALSELHCDKLHVDPENFKLLGNVLVVVLARNFGKEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
P +QA FQKVVAGVANALAH+YH
Sbjct: 122 TPVLQADFQKVVAGVANALAHRYH 145
>ref|NP_001014902.1| hemoglobin fetal subunit beta [Bos taurus].
Length = 145
Score = 243 bits (619), Expect = 5e-64
Identities = 117/144 (81%), Positives = 131/144 (90%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
LSAEEK AV L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2 LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLARR G +F
Sbjct: 62 HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARRFGSEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
+P++QA+FQKVV GVANALAH+YH
Sbjct: 122 SPELQASFQKVVTGVANALAHRYH 145
>ref|NP_001103979.1| hemoglobin, gamma 2 [Bos taurus].
Length = 145
Score = 243 bits (619), Expect = 5e-64
Identities = 117/144 (81%), Positives = 131/144 (90%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
LSAEEK AV L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2 LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLARR G +F
Sbjct: 62 HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARRFGSEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
+P++QA+FQKVV GVANALAH+YH
Sbjct: 122 SPELQASFQKVVTGVANALAHRYH 145
>ref|XP_002693271.1| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
Length = 145
Score = 239 bits (611), Expect = 4e-63
Identities = 116/144 (80%), Positives = 130/144 (90%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
LSAEEK AV L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2 LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR G +F
Sbjct: 62 HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
+P++QA+FQKVV GVANALAH+YH
Sbjct: 122 SPELQASFQKVVTGVANALAHRYH 145
>ref|XP_001252211.2| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
Length = 145
Score = 239 bits (611), Expect = 4e-63
Identities = 116/144 (80%), Positives = 130/144 (90%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
LSAEEK AV L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2 LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR G +F
Sbjct: 62 HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
+P++QA+FQKVV GVANALAH+YH
Sbjct: 122 SPELQASFQKVVTGVANALAHRYH 145
>ref|XP_001250142.2| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
Length = 145
Score = 239 bits (611), Expect = 4e-63
Identities = 116/144 (80%), Positives = 130/144 (90%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
LSAEEK AV L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2 LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR G +F
Sbjct: 62 HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
+P++QA+FQKVV GVANALAH+YH
Sbjct: 122 SPELQASFQKVVTGVANALAHRYH 145
>ref|XP_001249460.2| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
Length = 145
Score = 239 bits (611), Expect = 4e-63
Identities = 116/144 (80%), Positives = 130/144 (90%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
LSAEEK AV L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2 LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61
Query: 908 HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR G +F
Sbjct: 62 HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121
Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
+P++QA+FQKVV GVANALAH+YH
Sbjct: 122 SPELQASFQKVVTGVANALAHRYH 145
>ref|NP_001014910.1| hemoglobin subunit epsilon-4 [Bos taurus].
Length = 147
Score = 216 bits (551), Expect = 4e-56
Identities = 99/147 (67%), Positives = 122/147 (82%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVH + EEK AV LW KVNV+ VGGE+L RLL+VYPWTQRFF+SFG+L + A+MGNPK
Sbjct: 1 MVHFTTEEKAAVASLWAKVNVEVVGGESLARLLIVYPWTQRFFDSFGNLYSESAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHG+KVL SF + ++H+D+LKGTFA LSELHCD+LHVDPENFRLLGN+I++VLA
Sbjct: 61 VKAHGRKVLNSFGNAIEHMDDLKGTFADLSELHCDKLHVDPENFRLLGNMILIVLATHFS 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P +QA++QK+ VANALAHKYH
Sbjct: 121 KEFTPQMQASWQKLTNAVANALAHKYH 147
>ref|NP_001014913.1| hemoglobin subunit epsilon-2 [Bos taurus].
Length = 147
Score = 208 bits (529), Expect = 1e-53
Identities = 96/147 (65%), Positives = 118/147 (80%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVH + EE AV LW KVNV+ VGGE+L RLL+V PWTQRFF+SFG+L + A+MGNPK
Sbjct: 1 MVHFTTEENVAVASLWAKVNVEVVGGESLARLLIVCPWTQRFFDSFGNLYSESAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VK +G+KVL SF + +KH+D+LKGTFA LSELHCD+LHVDPENFRLLGN+I++VLA
Sbjct: 61 VKVYGRKVLNSFGNAIKHMDDLKGTFADLSELHCDKLHVDPENFRLLGNMILIVLATHFS 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P +QAA+QK+ VANAL HKYH
Sbjct: 121 KEFTPQMQAAWQKLTNAVANALTHKYH 147
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,271,990
Number of extensions: 1899104
Number of successful extensions: 5065
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5008
Number of HSP's successfully gapped: 25
Length of query: 558
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 451
Effective length of database: 14,140,958
Effective search space: 6377572058
Effective search space used: 6377572058
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001127
(1674 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862442.1| PREDICTED: similar to beta globin isoform 2 [Ca... 261 2e-69
Alignment gi|XP_537902.1| PREDICTED: similar to beta globin [Canis famili... 254 1e-67
Alignment gi|XP_850823.1| PREDICTED: similar to beta globin isoform 1 [Ca... 254 1e-67
Alignment gi|XP_542374.2| PREDICTED: similar to Hemoglobin epsilon chain ... 252 9e-67
Alignment gi|XP_534029.2| PREDICTED: similar to beta globin [Canis famili... 250 3e-66
Alignment gi|XP_542373.2| PREDICTED: similar to Hemoglobin epsilon chain ... 224 2e-58
Alignment gi|XP_862271.1| PREDICTED: similar to Myoglobin isoform 4 [Cani... 67 4e-11
Alignment gi|XP_862215.1| PREDICTED: similar to Myoglobin isoform 2 [Cani... 67 4e-11
Alignment gi|XP_850735.1| PREDICTED: similar to Myoglobin isoform 1 [Cani... 67 4e-11
Alignment gi|NP_001071055.1| cytoglobin [Canis lupus familiaris]. 62 1e-09
>ref|XP_862442.1| PREDICTED: similar to beta globin isoform 2 [Canis familiaris].
Length = 162
Score = 261 bits (666), Expect = 2e-69
Identities = 126/151 (83%), Positives = 135/151 (89%)
Frame = +2
Query: 707 QTDNMVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVM 886
QTD MVHL+AEEK V GLWGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS DAVM
Sbjct: 12 QTDTMVHLTAEEKSLVSGLWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVM 71
Query: 887 GNPKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLA 1066
N KVKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLA
Sbjct: 72 SNAKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLA 131
Query: 1067 RRLGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
G +F P VQAA+QKVVAGVANALAHKYH
Sbjct: 132 HHFGKEFTPQVQAAYQKVVAGVANALAHKYH 162
>ref|XP_537902.1| PREDICTED: similar to beta globin [Canis familiaris].
Length = 147
Score = 254 bits (650), Expect = 1e-67
Identities = 123/147 (83%), Positives = 132/147 (89%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+AEEK V GLWGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS DAVM N K
Sbjct: 1 MVHLTAEEKSLVSGLWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLA G
Sbjct: 61 VKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P VQAA+QKVVAGVANALAHKYH
Sbjct: 121 KEFTPQVQAAYQKVVAGVANALAHKYH 147
>ref|XP_850823.1| PREDICTED: similar to beta globin isoform 1 [Canis familiaris].
Length = 147
Score = 254 bits (650), Expect = 1e-67
Identities = 123/147 (83%), Positives = 132/147 (89%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+AEEK V GLWGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS DAVM N K
Sbjct: 1 MVHLTAEEKSLVSGLWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLA G
Sbjct: 61 VKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P VQAA+QKVVAGVANALAHKYH
Sbjct: 121 KEFTPQVQAAYQKVVAGVANALAHKYH 147
>ref|XP_542374.2| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris].
Length = 191
Score = 252 bits (643), Expect = 9e-67
Identities = 120/163 (73%), Positives = 140/163 (85%)
Frame = +2
Query: 671 LLLTQPCSLATAQTDNMVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFE 850
LLL Q + A+ D MVH SAEEK A+ LWGKVNV++ GGEALGRLLVVYPWTQRFF+
Sbjct: 29 LLLQQIATEKVARPDIMVHFSAEEKAAITSLWGKVNVEDAGGEALGRLLVVYPWTQRFFD 88
Query: 851 SFGDLSNADAVMGNPKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENF 1030
+FG+LS+A A+MGNPKVKAHGKKVL SF D +K++DNLKGTFAKLSELHCD+LHVDPENF
Sbjct: 89 NFGNLSSASAIMGNPKVKAHGKKVLTSFGDAVKNMDNLKGTFAKLSELHCDKLHVDPENF 148
Query: 1031 RLLGNVIVVVLARRLGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
RLLGNV+V++LA G +F PDVQAA+QK+VAGVA ALAHKYH
Sbjct: 149 RLLGNVLVIILASHFGKEFTPDVQAAWQKLVAGVATALAHKYH 191
>ref|XP_534029.2| PREDICTED: similar to beta globin [Canis familiaris].
Length = 147
Score = 250 bits (639), Expect = 3e-66
Identities = 120/147 (81%), Positives = 131/147 (89%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+AEEK + +WGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS DAVM N K
Sbjct: 1 MVHLTAEEKSLISSMWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLAR G
Sbjct: 61 VKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLARHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P QAA+QKVVAGVANALAHKYH
Sbjct: 121 REFTPLAQAAYQKVVAGVANALAHKYH 147
>ref|XP_542373.2| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris].
Length = 179
Score = 224 bits (571), Expect = 2e-58
Identities = 103/149 (69%), Positives = 125/149 (83%)
Frame = +2
Query: 713 DNMVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGN 892
D MVH +AEEK AV+ LW +VNV+ VGGE LGRLLVVYPWTQRFF++FG+LS+ A+MGN
Sbjct: 31 DTMVHFTAEEKAAVISLWARVNVELVGGEVLGRLLVVYPWTQRFFDNFGNLSSESAIMGN 90
Query: 893 PKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARR 1072
PKVKAHGKKVL SF + +KH+D+LK TFA+LSELHCD+LHVDPENF+LLGN+I++VLA
Sbjct: 91 PKVKAHGKKVLTSFGNAIKHMDDLKDTFAELSELHCDKLHVDPENFKLLGNMILIVLATH 150
Query: 1073 LGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P QAA+QK+ VANALAHKYH
Sbjct: 151 FSKEFTPQTQAAWQKLTTAVANALAHKYH 179
>ref|XP_862271.1| PREDICTED: similar to Myoglobin isoform 4 [Canis familiaris].
Length = 154
Score = 67.4 bits (163), Expect = 4e-11
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS E + VL +WGKV D G E L RL +P T F+ F L D + G+ +
Sbjct: 3 LSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDL 62
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
K HG VL + LK + + L++ H + + + + + I+ VL +
Sbjct: 63 KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 122
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
DF+ D +AA +K + N +A KY
Sbjct: 123 DFHADTEAAMKKALELFRNDIAAKY 147
>ref|XP_862215.1| PREDICTED: similar to Myoglobin isoform 2 [Canis familiaris].
Length = 154
Score = 67.4 bits (163), Expect = 4e-11
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS E + VL +WGKV D G E L RL +P T F+ F L D + G+ +
Sbjct: 3 LSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDL 62
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
K HG VL + LK + + L++ H + + + + + I+ VL +
Sbjct: 63 KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 122
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
DF+ D +AA +K + N +A KY
Sbjct: 123 DFHADTEAAMKKALELFRNDIAAKY 147
>ref|XP_850735.1| PREDICTED: similar to Myoglobin isoform 1 [Canis familiaris].
Length = 154
Score = 67.4 bits (163), Expect = 4e-11
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS E + VL +WGKV D G E L RL +P T F+ F L D + G+ +
Sbjct: 3 LSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDL 62
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
K HG VL + LK + + L++ H + + + + + I+ VL +
Sbjct: 63 KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 122
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
DF+ D +AA +K + N +A KY
Sbjct: 123 DFHADTEAAMKKALELFRNDIAAKY 147
>ref|NP_001071055.1| cytoglobin [Canis lupus familiaris].
Length = 183
Score = 62.4 bits (150), Expect = 1e-09
Identities = 35/136 (25%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS E++AV W ++ N ++VG L R V +P +++F F ++ + +P++
Sbjct: 12 LSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMTEPLEMERSPQL 71
Query: 902 KAHGKKVLQSFSDGLKHL---DNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARR 1072
+ H +V+ + + +++L + + A + + H + V+P F++L VI+ V+A
Sbjct: 72 RKHACRVMGALNTVVENLHDPEKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVIAEE 131
Query: 1073 LGHDFNPDVQAAFQKV 1120
+DF P+ Q A+ K+
Sbjct: 132 FANDFPPETQRAWAKL 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,314,747
Number of extensions: 1213603
Number of successful extensions: 5014
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4956
Number of HSP's successfully gapped: 11
Length of query: 558
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 450
Effective length of database: 15,274,216
Effective search space: 6873397200
Effective search space used: 6873397200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001127
(1674 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000509.1| hemoglobin subunit beta [Homo sapiens]. 256 3e-68
Alignment gi|NP_000510.1| hemoglobin subunit delta [Homo sapiens]. 254 2e-67
Alignment gi|NP_005321.1| hemoglobin subunit epsilon [Homo sapiens]. 228 1e-59
Alignment gi|NP_000175.1| hemoglobin subunit gamma-2 [Homo sapiens]. 222 7e-58
Alignment gi|NP_000550.2| hemoglobin subunit gamma-1 [Homo sapiens]. 219 8e-57
Alignment gi|NP_000508.1| hemoglobin subunit alpha [Homo sapiens]. 102 8e-22
Alignment gi|NP_000549.1| hemoglobin subunit alpha [Homo sapiens]. 102 8e-22
Alignment gi|NP_005323.1| hemoglobin subunit zeta [Homo sapiens]. 100 7e-21
Alignment gi|NP_005322.1| hemoglobin subunit theta-1 [Homo sapiens]. 97 4e-20
Alignment gi|NP_001003938.1| hemoglobin subunit mu [Homo sapiens]. 85 2e-16
>ref|NP_000509.1| hemoglobin subunit beta [Homo sapiens].
Length = 147
Score = 256 bits (655), Expect = 3e-68
Identities = 125/147 (85%), Positives = 131/147 (89%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EEK AV LWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLS DAVMGNPK
Sbjct: 1 MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL +FSDGL HLDNLKGTFA LSELHCD+LHVDPENFRLLGNV+V VLA G
Sbjct: 61 VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P VQAA+QKVVAGVANALAHKYH
Sbjct: 121 KEFTPPVQAAYQKVVAGVANALAHKYH 147
>ref|NP_000510.1| hemoglobin subunit delta [Homo sapiens].
Length = 147
Score = 254 bits (649), Expect = 2e-67
Identities = 123/147 (83%), Positives = 133/147 (90%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EEK AV LWGKVNVD VGGEALGRLLVVYPWTQRFFESFGDLS+ DAVMGNPK
Sbjct: 1 MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL +FSDGL HLDNLKGTF++LSELHCD+LHVDPENFRLLGNV+V VLAR G
Sbjct: 61 VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P +QAA+QKVVAGVANALAHKYH
Sbjct: 121 KEFTPQMQAAYQKVVAGVANALAHKYH 147
>ref|NP_005321.1| hemoglobin subunit epsilon [Homo sapiens].
Length = 147
Score = 228 bits (581), Expect = 1e-59
Identities = 106/147 (72%), Positives = 127/147 (86%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVH +AEEK AV LW K+NV+E GGEALGRLLVVYPWTQRFF+SFG+LS+ A++GNPK
Sbjct: 1 MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL SF D +K++DNLK FAKLSELHCD+LHVDPENF+LLGNV+V++LA G
Sbjct: 61 VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P+VQAA+QK+V+ VA ALAHKYH
Sbjct: 121 KEFTPEVQAAWQKLVSAVAIALAHKYH 147
>ref|NP_000175.1| hemoglobin subunit gamma-2 [Homo sapiens].
Length = 147
Score = 222 bits (566), Expect = 7e-58
Identities = 102/147 (69%), Positives = 125/147 (85%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
M H + E+K + LWGKVNV++ GGE LGRLLVVYPWTQRFF+SFG+LS+A A+MGNPK
Sbjct: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL S D +KHLD+LKGTFA+LSELHCD+LHVDPENF+LLGNV+V VLA G
Sbjct: 61 VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P+VQA++QK+V GVA+AL+ +YH
Sbjct: 121 KEFTPEVQASWQKMVTGVASALSSRYH 147
>ref|NP_000550.2| hemoglobin subunit gamma-1 [Homo sapiens].
Length = 147
Score = 219 bits (557), Expect = 8e-57
Identities = 101/147 (68%), Positives = 123/147 (83%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
M H + E+K + LWGKVNV++ GGE LGRLLVVYPWTQRFF+SFG+LS+A A+MGNPK
Sbjct: 1 MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL S D KHLD+LKGTFA+LSELHCD+LHVDPENF+LLGNV+V VLA G
Sbjct: 61 VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P+VQA++QK+V VA+AL+ +YH
Sbjct: 121 KEFTPEVQASWQKMVTAVASALSSRYH 147
>ref|NP_000508.1| hemoglobin subunit alpha [Homo sapiens].
Length = 142
Score = 102 bits (255), Expect = 8e-22
Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS +K V WGKV + E G EAL R+ + +P T+ +F F DLS+ G+ +V
Sbjct: 3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GSAQV 56
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
K HGKKV + ++ + H+D++ + LS+LH +L VDP NF+LL + ++V LA L
Sbjct: 57 KGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPA 116
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
+F P V A+ K +A V+ L KY
Sbjct: 117 EFTPAVHASLDKFLASVSTVLTSKY 141
>ref|NP_000549.1| hemoglobin subunit alpha [Homo sapiens].
Length = 142
Score = 102 bits (255), Expect = 8e-22
Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS +K V WGKV + E G EAL R+ + +P T+ +F F DLS+ G+ +V
Sbjct: 3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GSAQV 56
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
K HGKKV + ++ + H+D++ + LS+LH +L VDP NF+LL + ++V LA L
Sbjct: 57 KGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPA 116
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
+F P V A+ K +A V+ L KY
Sbjct: 117 EFTPAVHASLDKFLASVSTVLTSKY 141
>ref|NP_005323.1| hemoglobin subunit zeta [Homo sapiens].
Length = 142
Score = 99.8 bits (247), Expect = 7e-21
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNV--DEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
L+ E+ ++ +W K++ D +G E L RL + +P T+ +F F D G+ ++
Sbjct: 3 LTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQL 56
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
+AHG KV+ + D +K +D++ G +KLSELH L VDP NF+LL + ++V LA R
Sbjct: 57 RAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPA 116
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
DF + AA+ K ++ V++ L KY
Sbjct: 117 DFTAEAHAAWDKFLSVVSSVLTEKY 141
>ref|NP_005322.1| hemoglobin subunit theta-1 [Homo sapiens].
Length = 142
Score = 97.1 bits (240), Expect = 4e-20
Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LSAE++ V LW K+ NV EAL R + +P T+ +F S+ D G+ +V
Sbjct: 3 LSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF------SHLDLSPGSSQV 56
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
+AHG+KV + S ++ LD+L + LS LH QL VDP +F+LLG+ ++V LAR
Sbjct: 57 RAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPG 116
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
DF+P +QA+ K ++ V +AL +Y
Sbjct: 117 DFSPALQASLDKFLSHVISALVSEY 141
>ref|NP_001003938.1| hemoglobin subunit mu [Homo sapiens].
Length = 141
Score = 84.7 bits (208), Expect = 2e-16
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LSA+E+ + +W + E G E L RL VYP T+ +F +A ++
Sbjct: 2 LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL----- 56
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
+HG+++L + ++H+DNL+ + L++LH L VDP NF LL VVLA L
Sbjct: 57 -SHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQD 115
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
+F +QAA+ K + GVA L KY
Sbjct: 116 EFTVQMQAAWDKFLTGVAVVLTEKY 140
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,959,507
Number of extensions: 1120499
Number of successful extensions: 4869
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4794
Number of HSP's successfully gapped: 13
Length of query: 558
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 450
Effective length of database: 14,737,052
Effective search space: 6631673400
Effective search space used: 6631673400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001127
(1674 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001188320.1| hemoglobin subunit beta-1-like [Mus musculus]. 244 1e-64
Alignment gi|XP_003084762.1| PREDICTED: hemoglobin subunit beta-1-like is... 244 1e-64
Alignment gi|XP_003084764.1| PREDICTED: hemoglobin subunit beta-1-like is... 244 1e-64
Alignment gi|NP_032246.2| hemoglobin subunit beta-1 [Mus musculus]. 244 1e-64
Alignment gi|NP_058652.1| hemoglobin subunit beta-2 [Mus musculus]. 241 1e-63
Alignment gi|XP_003086670.1| PREDICTED: hemoglobin subunit beta-1-like is... 241 2e-63
Alignment gi|XP_003086669.1| PREDICTED: hemoglobin subunit beta-1-like is... 241 2e-63
Alignment gi|XP_003086671.1| PREDICTED: hemoglobin subunit beta-1-like is... 241 2e-63
Alignment gi|XP_003086668.1| PREDICTED: hemoglobin subunit beta-1-like is... 241 2e-63
Alignment gi|XP_003085432.1| PREDICTED: hemoglobin subunit beta-1-like is... 241 2e-63
>ref|NP_001188320.1| hemoglobin subunit beta-1-like [Mus musculus].
Length = 147
Score = 244 bits (623), Expect = 1e-64
Identities = 117/147 (79%), Positives = 129/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVAAALAHKYH 147
>ref|XP_003084762.1| PREDICTED: hemoglobin subunit beta-1-like isoform 2 [Mus musculus].
Length = 147
Score = 244 bits (623), Expect = 1e-64
Identities = 117/147 (79%), Positives = 129/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVAAALAHKYH 147
>ref|XP_003084764.1| PREDICTED: hemoglobin subunit beta-1-like isoform 4 [Mus musculus].
Length = 147
Score = 244 bits (623), Expect = 1e-64
Identities = 117/147 (79%), Positives = 129/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVAAALAHKYH 147
>ref|NP_032246.2| hemoglobin subunit beta-1 [Mus musculus].
Length = 147
Score = 244 bits (623), Expect = 1e-64
Identities = 117/147 (79%), Positives = 129/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVAAALAHKYH 147
>ref|NP_058652.1| hemoglobin subunit beta-2 [Mus musculus].
Length = 147
Score = 241 bits (615), Expect = 1e-63
Identities = 116/147 (78%), Positives = 128/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV LW KVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGNPK
Sbjct: 1 MVHLTDAEKSAVSCLWAKVNPDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F++GLK+LDNLKGTFA LSELHCD+LHVDPENFRLLGN IV+VL LG
Sbjct: 61 VKAHGKKVITAFNEGLKNLDNLKGTFASLSELHCDKLHVDPENFRLLGNAIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVATALAHKYH 147
>ref|XP_003086670.1| PREDICTED: hemoglobin subunit beta-1-like isoform 3 [Mus musculus].
Length = 147
Score = 241 bits (614), Expect = 2e-63
Identities = 116/147 (78%), Positives = 128/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVATALAHKYH 147
>ref|XP_003086669.1| PREDICTED: hemoglobin subunit beta-1-like isoform 2 [Mus musculus].
Length = 147
Score = 241 bits (614), Expect = 2e-63
Identities = 116/147 (78%), Positives = 128/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVATALAHKYH 147
>ref|XP_003086671.1| PREDICTED: hemoglobin subunit beta-1-like isoform 4 [Mus musculus].
Length = 147
Score = 241 bits (614), Expect = 2e-63
Identities = 116/147 (78%), Positives = 128/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVATALAHKYH 147
>ref|XP_003086668.1| PREDICTED: hemoglobin subunit beta-1-like isoform 1 [Mus musculus].
Length = 147
Score = 241 bits (614), Expect = 2e-63
Identities = 116/147 (78%), Positives = 128/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVATALAHKYH 147
>ref|XP_003085432.1| PREDICTED: hemoglobin subunit beta-1-like isoform 3 [Mus musculus].
Length = 147
Score = 241 bits (614), Expect = 2e-63
Identities = 116/147 (78%), Positives = 128/147 (87%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHL+ EK AV LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1 MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL LG
Sbjct: 61 VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
DF P QAAFQKVVAGVA ALAHKYH
Sbjct: 121 KDFTPAAQAAFQKVVAGVATALAHKYH 147
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,843,053
Number of extensions: 957188
Number of successful extensions: 3878
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 44
Length of query: 558
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 452
Effective length of database: 12,433,743
Effective search space: 5620051836
Effective search space used: 5620051836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001127
(1674 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138313.1| hemoglobin subunit beta [Sus scrofa]. 297 1e-80
Alignment gi|XP_003129563.1| PREDICTED: hemoglobin subunit beta-like [Sus... 266 3e-71
Alignment gi|NP_999612.1| hemoglobin subunit epsilon [Sus scrofa]. 239 3e-63
Alignment gi|XP_003357211.1| PREDICTED: LOW QUALITY PROTEIN: hemoglobin s... 139 6e-33
Alignment gi|NP_999401.1| myoglobin [Sus scrofa]. 64 2e-10
Alignment gi|XP_003131227.2| PREDICTED: cytoglobin-like [Sus scrofa]. 63 4e-10
>ref|NP_001138313.1| hemoglobin subunit beta [Sus scrofa].
Length = 147
Score = 297 bits (761), Expect = 1e-80
Identities = 146/147 (99%), Positives = 147/147 (100%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK
Sbjct: 1 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG
Sbjct: 61 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
HDFNP+VQAAFQKVVAGVANALAHKYH
Sbjct: 121 HDFNPNVQAAFQKVVAGVANALAHKYH 147
>ref|XP_003129563.1| PREDICTED: hemoglobin subunit beta-like [Sus scrofa].
Length = 144
Score = 266 bits (679), Expect = 3e-71
Identities = 131/144 (90%), Positives = 138/144 (95%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVHLSAEE AVLGL GKVN+ E+G +ALG+LLVVYPWTQRFFESFGDLSNADAVMGNPK
Sbjct: 1 MVHLSAEESAAVLGLQGKVNMVELGAKALGKLLVVYPWTQRFFESFGDLSNADAVMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVV+LARR G
Sbjct: 61 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVILARRFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAH 1150
+DFNPD+QAAFQKVVAGVANALAH
Sbjct: 121 NDFNPDLQAAFQKVVAGVANALAH 144
>ref|NP_999612.1| hemoglobin subunit epsilon [Sus scrofa].
Length = 147
Score = 239 bits (610), Expect = 3e-63
Identities = 109/147 (74%), Positives = 131/147 (89%)
Frame = +2
Query: 719 MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
MVH +AEEK + GLWGKVNV+E GG+A+GRLLVVYPWTQRFF+SFG++S+ A+MGNPK
Sbjct: 1 MVHFTAEEKSVITGLWGKVNVEETGGQAVGRLLVVYPWTQRFFDSFGNMSSPSAIMGNPK 60
Query: 899 VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
VKAHGKKVL +F D +K++DNLKGTFAKLSELHCD+LHVDPENFRLLGN+IV++LA G
Sbjct: 61 VKAHGKKVLTAFGDAVKNMDNLKGTFAKLSELHCDKLHVDPENFRLLGNMIVIILASHFG 120
Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
+F P+VQAA+QK+VAGVA ALAHKYH
Sbjct: 121 GEFTPEVQAAWQKLVAGVATALAHKYH 147
>ref|XP_003357211.1| PREDICTED: LOW QUALITY PROTEIN: hemoglobin subunit epsilon-4-like
[Sus scrofa].
Length = 132
Score = 139 bits (349), Expect = 6e-33
Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Frame = +2
Query: 827 PWTQRFFESFGDLSNADAVMGNPKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQ 1006
P TQRFF++FG LS+ VMGNP+VKAHG+KVL SF + LKH +LKGT A LSELHC +
Sbjct: 21 PRTQRFFDNFGTLSSDSGVMGNPRVKAHGRKVLTSFXNALKHTHDLKGTLACLSELHCVK 80
Query: 1007 LHVDPENFRLLG-NVIVVVLARRLGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
L VDPENFRLLG I+ VLA DF P QAA+QK+ +ANALAHKYH
Sbjct: 81 LQVDPENFRLLGAEQILTVLATHFSKDFTPQRQAAWQKLTDDMANALAHKYH 132
>ref|NP_999401.1| myoglobin [Sus scrofa].
Length = 154
Score = 64.3 bits (155), Expect = 2e-10
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Frame = +2
Query: 728 LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
LS E + VL +WGKV D G E L RL +P T F+ F L + D + + +
Sbjct: 3 LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 62
Query: 902 KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
K HG VL + LK + + L++ H + + + + I+ VL +
Sbjct: 63 KKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPG 122
Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
DF D Q A K + N +A KY
Sbjct: 123 DFGADAQGAMSKALELFRNDMAAKY 147
>ref|XP_003131227.2| PREDICTED: cytoglobin-like [Sus scrofa].
Length = 190
Score = 63.2 bits (152), Expect = 4e-10
Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Frame = +2
Query: 686 PCSLATAQTDNMVHLSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFG 859
P + + + LS E++AV W ++ N ++VG L R V +P +++F F
Sbjct: 5 PGEMEIERRERSEELSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFK 64
Query: 860 DLSNADAVMGNPKVKAHGKKVLQSFSDGLKHL---DNLKGTFAKLSELHCDQLHVDPENF 1030
+ + + +P+++ H +V+ + + +++L + + A + + H + V+P F
Sbjct: 65 HMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPEKVSSVLALVGKAHALKHKVEPVYF 124
Query: 1031 RLLGNVIVVVLARRLGHDFNPDVQAAFQKV 1120
++L VI+ V+A +DF P+ Q A+ K+
Sbjct: 125 KILSGVILEVIAEEFANDFPPETQRAWAKL 154
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,118,133
Number of extensions: 2396547
Number of successful extensions: 3146
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3115
Number of HSP's successfully gapped: 6
Length of query: 558
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 454
Effective length of database: 8,754,644
Effective search space: 3974608376
Effective search space used: 3974608376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001127
(1674 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 502 e-139
>Sscrofa_Chr09
|| Length = 153670197
Score = 502 bits (253), Expect = e-139
Identities = 253/253 (100%)
Strand = Plus / Minus
Query: 1033 gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633234 gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 5633175
Query: 1093 ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633174 ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 5633115
Query: 1153 gtaccactaagttccccttcctgatttccaggaggagccctttttcctctgaacccaaaa 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633114 gtaccactaagttccccttcctgatttccaggaggagccctttttcctctgaacccaaaa 5633055
Query: 1213 actggatatggaaatattatgaagagttttgagcatctggcctctgcgtaataaaaacat 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633054 actggatatggaaatattatgaagagttttgagcatctggcctctgcgtaataaaaacat 5632995
Query: 1273 ttattttcattgc 1285
|||||||||||||
Sbjct: 5632994 ttattttcattgc 5632982
Score = 440 bits (222), Expect = e-120
Identities = 225/226 (99%)
Strand = Plus / Minus
Query: 808 caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634105 caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 5634046
Query: 868 caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634045 caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 5633986
Query: 928 gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633985 gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 5633926
Query: 988 tgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 1033
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633925 cgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 5633880
Score = 440 bits (222), Expect = e-120
Identities = 225/226 (99%)
Strand = Plus / Minus
Query: 808 caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5642006 caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 5641947
Query: 868 caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641946 caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 5641887
Query: 928 gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641886 gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 5641827
Query: 988 tgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 1033
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641826 cgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 5641781
Score = 280 bits (141), Expect = 2e-72
Identities = 144/145 (99%)
Strand = Plus / Minus
Query: 667 acatttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgca 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634363 acatttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgca 5634304
Query: 727 tctgtctgctgaagagaaggaggccgtcctcggcctgtggggcaaagtgaatgtggacga 786
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634303 tctgtctgctgaggagaaggaggccgtcctcggcctgtggggcaaagtgaatgtggacga 5634244
Query: 787 agttggtggtgaggccctgggcagg 811
|||||||||||||||||||||||||
Sbjct: 5634243 agttggtggtgaggccctgggcagg 5634219
Score = 182 bits (92), Expect = 4e-43
Identities = 119/128 (92%)
Strand = Plus / Minus
Query: 1033 gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 1092
|||||||||||||||||| |||||| | |||||||||||| ||||| |||||||||||||
Sbjct: 5641130 gctcctgggcaacgtgattgtggttatactggctcgccgctttggcaatgacttcaaccc 5641071
Query: 1093 ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 1152
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5641070 agacctgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacta 5641011
Query: 1153 gtaccact 1160
||||||||
Sbjct: 5641010 gtaccact 5641003
Score = 159 bits (80), Expect = 6e-36
Identities = 128/144 (88%)
Strand = Plus / Minus
Query: 671 ttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgcatctg 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5642271 ttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgcatctg 5642212
Query: 731 tctgctgaagagaaggaggccgtcctcggcctgtggggcaaagtgaatgtggacgaagtt 790
|||||||| ||| || || |||||||||||| |||||||||||| ||| ||| ||
Sbjct: 5642211 tctgctgaggagtcggctgctgtcctcggcctgcagggcaaagtgaacatggttgaactt 5642152
Query: 791 ggtggtgaggccctgggcaggctg 814
|||| | |||||||||||| ||||
Sbjct: 5642151 ggtgctaaggccctgggcaagctg 5642128
Score = 135 bits (68), Expect = 9e-29
Identities = 131/152 (86%)
Strand = Plus / Minus
Query: 882 tcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctccagtccttcagtgacg 941
||||||| || |||||||| ||||||||||||||||||||||| |||||| | ||||
Sbjct: 5652346 tcatgggaaaccccaaggtcaaggcccacggcaagaaggtgctgacctccttcggagacg 5652287
Query: 942 gcctgaaacatctcgacaacctcaagggcacctttgctaagctgagtgagctgcactgtg 1001
| || | | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5652286 cggtcaagaacatggacaacctcaagggcacctttgcgaagctgagtgagctgcactgtg 5652227
Query: 1002 accagctgcacgtggatcctgagaacttcagg 1033
|| ||||||| |||||||||||||||||||||
Sbjct: 5652226 acaagctgcatgtggatcctgagaacttcagg 5652195
Score = 79.8 bits (40), Expect = 4e-12
Identities = 106/128 (82%)
Strand = Plus / Minus
Query: 1033 gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 1092
||||||||||||| |||||||| || |||||||| | | ||||| || |||| |||
Sbjct: 5650757 gctcctgggcaacatgatagtgattattctggcttctcactttggcggagagttcacccc 5650698
Query: 1093 ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 1152
|| ||||||||||| | |||||| ||||||||||||| |||| ||| |||||||||||
Sbjct: 5650697 tgaagtgcaggctgcatggcagaagctggtggctggtgttgccactgctctggcccacaa 5650638
Query: 1153 gtaccact 1160
||||||||
Sbjct: 5650637 gtaccact 5650630
Score = 75.8 bits (38), Expect = 7e-11
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 960 acctcaagggcacctttgctaagctgagtgagctgcactgtgaccagctgcacgtggatc 1019
|||||||||||||||| || || |||||||||||||||| | ||||||| |||||||
Sbjct: 5646411 acctcaagggcaccttggcatgtctaagtgagctgcactgtgtcaagctgcaggtggatc 5646352
Query: 1020 ctgagaacttcagg 1033
||||||||||||||
Sbjct: 5646351 ctgagaacttcagg 5646338
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,339,385
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 10
Length of query: 1674
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1652
Effective length of database: 2,808,408,574
Effective search space: 4639490964248
Effective search space used: 4639490964248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)