Animal-Genome cDNA 20110601C-001127


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001127
         (1674 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001103977.1| hemoglobin, epsilon 1 [Bos taurus].               246   3e-65
Alignment   gi|NP_776342.1| hemoglobin subunit beta [Bos taurus].                245   7e-65
Alignment   gi|NP_001014902.1| hemoglobin fetal subunit beta [Bos taurus].       243   5e-64
Alignment   gi|NP_001103979.1| hemoglobin, gamma 2 [Bos taurus].                 243   5e-64
Alignment   gi|XP_002693271.1| PREDICTED: hemoglobin fetal subunit beta-lik...   239   4e-63
Alignment   gi|XP_001252211.2| PREDICTED: hemoglobin fetal subunit beta-lik...   239   4e-63
Alignment   gi|XP_001250142.2| PREDICTED: hemoglobin fetal subunit beta-lik...   239   4e-63
Alignment   gi|XP_001249460.2| PREDICTED: hemoglobin fetal subunit beta-lik...   239   4e-63
Alignment   gi|NP_001014910.1| hemoglobin subunit epsilon-4 [Bos taurus].        216   4e-56
Alignment   gi|NP_001014913.1| hemoglobin subunit epsilon-2 [Bos taurus].        208   1e-53

>ref|NP_001103977.1| hemoglobin, epsilon 1 [Bos taurus].
          Length = 147

 Score =  246 bits (629), Expect = 3e-65
 Identities = 115/147 (78%), Positives = 132/147 (89%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVH +AEEK A+ GLWGKVNV+E GGEALGRLLVVYPWTQRFF+SFG+LS+A A+MGNPK
Sbjct: 1    MVHFTAEEKAAITGLWGKVNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL SF + +K+LDNLKG FAKLSELHCD+LHVDPENFRLLGNVIV++LA   G
Sbjct: 61   VKAHGKKVLTSFGEAIKNLDNLKGAFAKLSELHCDKLHVDPENFRLLGNVIVIILATHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F PDVQAA+QK+V+GVA ALAHKYH
Sbjct: 121  REFTPDVQAAWQKLVSGVATALAHKYH 147


>ref|NP_776342.1| hemoglobin subunit beta [Bos taurus].
          Length = 145

 Score =  245 bits (626), Expect = 7e-65
 Identities = 119/144 (82%), Positives = 129/144 (89%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            L+AEEK AV   WGKV VDEVGGEALGRLLVVYPWTQRFFESFGDLS ADAVM NPKVKA
Sbjct: 2    LTAEEKAAVTAFWGKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSTADAVMNNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SFS+G+KHLD+LKGTFA LSELHCD+LHVDPENF+LLGNV+VVVLAR  G +F
Sbjct: 62   HGKKVLDSFSNGMKHLDDLKGTFAALSELHCDKLHVDPENFKLLGNVLVVVLARNFGKEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
             P +QA FQKVVAGVANALAH+YH
Sbjct: 122  TPVLQADFQKVVAGVANALAHRYH 145


>ref|NP_001014902.1| hemoglobin fetal subunit beta [Bos taurus].
          Length = 145

 Score =  243 bits (619), Expect = 5e-64
 Identities = 117/144 (81%), Positives = 131/144 (90%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            LSAEEK AV  L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2    LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLARR G +F
Sbjct: 62   HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARRFGSEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
            +P++QA+FQKVV GVANALAH+YH
Sbjct: 122  SPELQASFQKVVTGVANALAHRYH 145


>ref|NP_001103979.1| hemoglobin, gamma 2 [Bos taurus].
          Length = 145

 Score =  243 bits (619), Expect = 5e-64
 Identities = 117/144 (81%), Positives = 131/144 (90%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            LSAEEK AV  L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2    LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLARR G +F
Sbjct: 62   HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARRFGSEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
            +P++QA+FQKVV GVANALAH+YH
Sbjct: 122  SPELQASFQKVVTGVANALAHRYH 145


>ref|XP_002693271.1| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
          Length = 145

 Score =  239 bits (611), Expect = 4e-63
 Identities = 116/144 (80%), Positives = 130/144 (90%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            LSAEEK AV  L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2    LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR  G +F
Sbjct: 62   HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
            +P++QA+FQKVV GVANALAH+YH
Sbjct: 122  SPELQASFQKVVTGVANALAHRYH 145


>ref|XP_001252211.2| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
          Length = 145

 Score =  239 bits (611), Expect = 4e-63
 Identities = 116/144 (80%), Positives = 130/144 (90%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            LSAEEK AV  L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2    LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR  G +F
Sbjct: 62   HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
            +P++QA+FQKVV GVANALAH+YH
Sbjct: 122  SPELQASFQKVVTGVANALAHRYH 145


>ref|XP_001250142.2| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
          Length = 145

 Score =  239 bits (611), Expect = 4e-63
 Identities = 116/144 (80%), Positives = 130/144 (90%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            LSAEEK AV  L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2    LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR  G +F
Sbjct: 62   HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
            +P++QA+FQKVV GVANALAH+YH
Sbjct: 122  SPELQASFQKVVTGVANALAHRYH 145


>ref|XP_001249460.2| PREDICTED: hemoglobin fetal subunit beta-like [Bos taurus].
          Length = 145

 Score =  239 bits (611), Expect = 4e-63
 Identities = 116/144 (80%), Positives = 130/144 (90%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKVKA 907
            LSAEEK AV  L+ KV VDEVGGEALGRLLVVYPWTQRFFESFGDLS+ADA++GNPKVKA
Sbjct: 2    LSAEEKAAVTSLFAKVKVDEVGGEALGRLLVVYPWTQRFFESFGDLSSADAILGNPKVKA 61

Query: 908  HGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGHDF 1087
            HGKKVL SF +GLK LD+LKG FA LSELHCD+LHVDPENFRLLGNV+VVVLAR  G +F
Sbjct: 62   HGKKVLDSFCEGLKQLDDLKGAFASLSELHCDKLHVDPENFRLLGNVLVVVLARCFGSEF 121

Query: 1088 NPDVQAAFQKVVAGVANALAHKYH 1159
            +P++QA+FQKVV GVANALAH+YH
Sbjct: 122  SPELQASFQKVVTGVANALAHRYH 145


>ref|NP_001014910.1| hemoglobin subunit epsilon-4 [Bos taurus].
          Length = 147

 Score =  216 bits (551), Expect = 4e-56
 Identities = 99/147 (67%), Positives = 122/147 (82%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVH + EEK AV  LW KVNV+ VGGE+L RLL+VYPWTQRFF+SFG+L +  A+MGNPK
Sbjct: 1    MVHFTTEEKAAVASLWAKVNVEVVGGESLARLLIVYPWTQRFFDSFGNLYSESAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHG+KVL SF + ++H+D+LKGTFA LSELHCD+LHVDPENFRLLGN+I++VLA    
Sbjct: 61   VKAHGRKVLNSFGNAIEHMDDLKGTFADLSELHCDKLHVDPENFRLLGNMILIVLATHFS 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P +QA++QK+   VANALAHKYH
Sbjct: 121  KEFTPQMQASWQKLTNAVANALAHKYH 147


>ref|NP_001014913.1| hemoglobin subunit epsilon-2 [Bos taurus].
          Length = 147

 Score =  208 bits (529), Expect = 1e-53
 Identities = 96/147 (65%), Positives = 118/147 (80%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVH + EE  AV  LW KVNV+ VGGE+L RLL+V PWTQRFF+SFG+L +  A+MGNPK
Sbjct: 1    MVHFTTEENVAVASLWAKVNVEVVGGESLARLLIVCPWTQRFFDSFGNLYSESAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VK +G+KVL SF + +KH+D+LKGTFA LSELHCD+LHVDPENFRLLGN+I++VLA    
Sbjct: 61   VKVYGRKVLNSFGNAIKHMDDLKGTFADLSELHCDKLHVDPENFRLLGNMILIVLATHFS 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P +QAA+QK+   VANAL HKYH
Sbjct: 121  KEFTPQMQAAWQKLTNAVANALTHKYH 147


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,271,990
Number of extensions: 1899104
Number of successful extensions: 5065
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5008
Number of HSP's successfully gapped: 25
Length of query: 558
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 451
Effective length of database: 14,140,958
Effective search space: 6377572058
Effective search space used: 6377572058
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001127
         (1674 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_862442.1| PREDICTED: similar to beta globin isoform 2 [Ca...   261   2e-69
Alignment   gi|XP_537902.1| PREDICTED: similar to beta globin [Canis famili...   254   1e-67
Alignment   gi|XP_850823.1| PREDICTED: similar to beta globin isoform 1 [Ca...   254   1e-67
Alignment   gi|XP_542374.2| PREDICTED: similar to Hemoglobin epsilon chain ...   252   9e-67
Alignment   gi|XP_534029.2| PREDICTED: similar to beta globin [Canis famili...   250   3e-66
Alignment   gi|XP_542373.2| PREDICTED: similar to Hemoglobin epsilon chain ...   224   2e-58
Alignment   gi|XP_862271.1| PREDICTED: similar to Myoglobin isoform 4 [Cani...    67   4e-11
Alignment   gi|XP_862215.1| PREDICTED: similar to Myoglobin isoform 2 [Cani...    67   4e-11
Alignment   gi|XP_850735.1| PREDICTED: similar to Myoglobin isoform 1 [Cani...    67   4e-11
Alignment   gi|NP_001071055.1| cytoglobin [Canis lupus familiaris].               62   1e-09

>ref|XP_862442.1| PREDICTED: similar to beta globin isoform 2 [Canis familiaris].
          Length = 162

 Score =  261 bits (666), Expect = 2e-69
 Identities = 126/151 (83%), Positives = 135/151 (89%)
 Frame = +2

Query: 707  QTDNMVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVM 886
            QTD MVHL+AEEK  V GLWGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS  DAVM
Sbjct: 12   QTDTMVHLTAEEKSLVSGLWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVM 71

Query: 887  GNPKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLA 1066
             N KVKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLA
Sbjct: 72   SNAKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLA 131

Query: 1067 RRLGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
               G +F P VQAA+QKVVAGVANALAHKYH
Sbjct: 132  HHFGKEFTPQVQAAYQKVVAGVANALAHKYH 162


>ref|XP_537902.1| PREDICTED: similar to beta globin [Canis familiaris].
          Length = 147

 Score =  254 bits (650), Expect = 1e-67
 Identities = 123/147 (83%), Positives = 132/147 (89%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+AEEK  V GLWGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS  DAVM N K
Sbjct: 1    MVHLTAEEKSLVSGLWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLA   G
Sbjct: 61   VKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P VQAA+QKVVAGVANALAHKYH
Sbjct: 121  KEFTPQVQAAYQKVVAGVANALAHKYH 147


>ref|XP_850823.1| PREDICTED: similar to beta globin isoform 1 [Canis familiaris].
          Length = 147

 Score =  254 bits (650), Expect = 1e-67
 Identities = 123/147 (83%), Positives = 132/147 (89%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+AEEK  V GLWGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS  DAVM N K
Sbjct: 1    MVHLTAEEKSLVSGLWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLA   G
Sbjct: 61   VKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLAHHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P VQAA+QKVVAGVANALAHKYH
Sbjct: 121  KEFTPQVQAAYQKVVAGVANALAHKYH 147


>ref|XP_542374.2| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris].
          Length = 191

 Score =  252 bits (643), Expect = 9e-67
 Identities = 120/163 (73%), Positives = 140/163 (85%)
 Frame = +2

Query: 671  LLLTQPCSLATAQTDNMVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFE 850
            LLL Q  +   A+ D MVH SAEEK A+  LWGKVNV++ GGEALGRLLVVYPWTQRFF+
Sbjct: 29   LLLQQIATEKVARPDIMVHFSAEEKAAITSLWGKVNVEDAGGEALGRLLVVYPWTQRFFD 88

Query: 851  SFGDLSNADAVMGNPKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENF 1030
            +FG+LS+A A+MGNPKVKAHGKKVL SF D +K++DNLKGTFAKLSELHCD+LHVDPENF
Sbjct: 89   NFGNLSSASAIMGNPKVKAHGKKVLTSFGDAVKNMDNLKGTFAKLSELHCDKLHVDPENF 148

Query: 1031 RLLGNVIVVVLARRLGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
            RLLGNV+V++LA   G +F PDVQAA+QK+VAGVA ALAHKYH
Sbjct: 149  RLLGNVLVIILASHFGKEFTPDVQAAWQKLVAGVATALAHKYH 191


>ref|XP_534029.2| PREDICTED: similar to beta globin [Canis familiaris].
          Length = 147

 Score =  250 bits (639), Expect = 3e-66
 Identities = 120/147 (81%), Positives = 131/147 (89%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+AEEK  +  +WGKVNVDEVGGEALGRLL+VYPWTQRFF+SFGDLS  DAVM N K
Sbjct: 1    MVHLTAEEKSLISSMWGKVNVDEVGGEALGRLLIVYPWTQRFFDSFGDLSTPDAVMSNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL SFSDGLK+LDNLKGTFAKLSELHCD+LHVDPENF+LLGNV+V VLAR  G
Sbjct: 61   VKAHGKKVLNSFSDGLKNLDNLKGTFAKLSELHCDKLHVDPENFKLLGNVLVCVLARHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P  QAA+QKVVAGVANALAHKYH
Sbjct: 121  REFTPLAQAAYQKVVAGVANALAHKYH 147


>ref|XP_542373.2| PREDICTED: similar to Hemoglobin epsilon chain [Canis familiaris].
          Length = 179

 Score =  224 bits (571), Expect = 2e-58
 Identities = 103/149 (69%), Positives = 125/149 (83%)
 Frame = +2

Query: 713  DNMVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGN 892
            D MVH +AEEK AV+ LW +VNV+ VGGE LGRLLVVYPWTQRFF++FG+LS+  A+MGN
Sbjct: 31   DTMVHFTAEEKAAVISLWARVNVELVGGEVLGRLLVVYPWTQRFFDNFGNLSSESAIMGN 90

Query: 893  PKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARR 1072
            PKVKAHGKKVL SF + +KH+D+LK TFA+LSELHCD+LHVDPENF+LLGN+I++VLA  
Sbjct: 91   PKVKAHGKKVLTSFGNAIKHMDDLKDTFAELSELHCDKLHVDPENFKLLGNMILIVLATH 150

Query: 1073 LGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
               +F P  QAA+QK+   VANALAHKYH
Sbjct: 151  FSKEFTPQTQAAWQKLTTAVANALAHKYH 179


>ref|XP_862271.1| PREDICTED: similar to Myoglobin isoform 4 [Canis familiaris].
          Length = 154

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  E + VL +WGKV  D    G E L RL   +P T   F+ F  L   D + G+  +
Sbjct: 3    LSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDL 62

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            K HG  VL +    LK   + +     L++ H  +  +  +    + + I+ VL  +   
Sbjct: 63   KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 122

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            DF+ D +AA +K +    N +A KY
Sbjct: 123  DFHADTEAAMKKALELFRNDIAAKY 147


>ref|XP_862215.1| PREDICTED: similar to Myoglobin isoform 2 [Canis familiaris].
          Length = 154

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  E + VL +WGKV  D    G E L RL   +P T   F+ F  L   D + G+  +
Sbjct: 3    LSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDL 62

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            K HG  VL +    LK   + +     L++ H  +  +  +    + + I+ VL  +   
Sbjct: 63   KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 122

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            DF+ D +AA +K +    N +A KY
Sbjct: 123  DFHADTEAAMKKALELFRNDIAAKY 147


>ref|XP_850735.1| PREDICTED: similar to Myoglobin isoform 1 [Canis familiaris].
          Length = 154

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  E + VL +WGKV  D    G E L RL   +P T   F+ F  L   D + G+  +
Sbjct: 3    LSDGEWQLVLNIWGKVETDLAGHGQEVLIRLFKNHPETLDKFDKFKHLKTEDEMKGSEDL 62

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            K HG  VL +    LK   + +     L++ H  +  +  +    + + I+ VL  +   
Sbjct: 63   KKHGNTVLTALGGILKKKGHHEAELKPLAQSHATKHKIPVKYLEFISDAIIQVLQSKHSG 122

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            DF+ D +AA +K +    N +A KY
Sbjct: 123  DFHADTEAAMKKALELFRNDIAAKY 147


>ref|NP_001071055.1| cytoglobin [Canis lupus familiaris].
          Length = 183

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 35/136 (25%), Positives = 73/136 (53%), Gaps = 5/136 (3%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  E++AV   W ++  N ++VG   L R  V +P  +++F  F  ++    +  +P++
Sbjct: 12   LSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMTEPLEMERSPQL 71

Query: 902  KAHGKKVLQSFSDGLKHL---DNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARR 1072
            + H  +V+ + +  +++L   + +    A + + H  +  V+P  F++L  VI+ V+A  
Sbjct: 72   RKHACRVMGALNTVVENLHDPEKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVIAEE 131

Query: 1073 LGHDFNPDVQAAFQKV 1120
              +DF P+ Q A+ K+
Sbjct: 132  FANDFPPETQRAWAKL 147


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,314,747
Number of extensions: 1213603
Number of successful extensions: 5014
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4956
Number of HSP's successfully gapped: 11
Length of query: 558
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 450
Effective length of database: 15,274,216
Effective search space: 6873397200
Effective search space used: 6873397200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001127
         (1674 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000509.1| hemoglobin subunit beta [Homo sapiens].              256   3e-68
Alignment   gi|NP_000510.1| hemoglobin subunit delta [Homo sapiens].             254   2e-67
Alignment   gi|NP_005321.1| hemoglobin subunit epsilon [Homo sapiens].           228   1e-59
Alignment   gi|NP_000175.1| hemoglobin subunit gamma-2 [Homo sapiens].           222   7e-58
Alignment   gi|NP_000550.2| hemoglobin subunit gamma-1 [Homo sapiens].           219   8e-57
Alignment   gi|NP_000508.1| hemoglobin subunit alpha [Homo sapiens].             102   8e-22
Alignment   gi|NP_000549.1| hemoglobin subunit alpha [Homo sapiens].             102   8e-22
Alignment   gi|NP_005323.1| hemoglobin subunit zeta [Homo sapiens].              100   7e-21
Alignment   gi|NP_005322.1| hemoglobin subunit theta-1 [Homo sapiens].            97   4e-20
Alignment   gi|NP_001003938.1| hemoglobin subunit mu [Homo sapiens].              85   2e-16

>ref|NP_000509.1| hemoglobin subunit beta [Homo sapiens].
          Length = 147

 Score =  256 bits (655), Expect = 3e-68
 Identities = 125/147 (85%), Positives = 131/147 (89%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+ EEK AV  LWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLS  DAVMGNPK
Sbjct: 1    MVHLTPEEKSAVTALWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL +FSDGL HLDNLKGTFA LSELHCD+LHVDPENFRLLGNV+V VLA   G
Sbjct: 61   VKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P VQAA+QKVVAGVANALAHKYH
Sbjct: 121  KEFTPPVQAAYQKVVAGVANALAHKYH 147


>ref|NP_000510.1| hemoglobin subunit delta [Homo sapiens].
          Length = 147

 Score =  254 bits (649), Expect = 2e-67
 Identities = 123/147 (83%), Positives = 133/147 (90%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+ EEK AV  LWGKVNVD VGGEALGRLLVVYPWTQRFFESFGDLS+ DAVMGNPK
Sbjct: 1    MVHLTPEEKTAVNALWGKVNVDAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL +FSDGL HLDNLKGTF++LSELHCD+LHVDPENFRLLGNV+V VLAR  G
Sbjct: 61   VKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P +QAA+QKVVAGVANALAHKYH
Sbjct: 121  KEFTPQMQAAYQKVVAGVANALAHKYH 147


>ref|NP_005321.1| hemoglobin subunit epsilon [Homo sapiens].
          Length = 147

 Score =  228 bits (581), Expect = 1e-59
 Identities = 106/147 (72%), Positives = 127/147 (86%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVH +AEEK AV  LW K+NV+E GGEALGRLLVVYPWTQRFF+SFG+LS+  A++GNPK
Sbjct: 1    MVHFTAEEKAAVTSLWSKMNVEEAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL SF D +K++DNLK  FAKLSELHCD+LHVDPENF+LLGNV+V++LA   G
Sbjct: 61   VKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P+VQAA+QK+V+ VA ALAHKYH
Sbjct: 121  KEFTPEVQAAWQKLVSAVAIALAHKYH 147


>ref|NP_000175.1| hemoglobin subunit gamma-2 [Homo sapiens].
          Length = 147

 Score =  222 bits (566), Expect = 7e-58
 Identities = 102/147 (69%), Positives = 125/147 (85%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            M H + E+K  +  LWGKVNV++ GGE LGRLLVVYPWTQRFF+SFG+LS+A A+MGNPK
Sbjct: 1    MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL S  D +KHLD+LKGTFA+LSELHCD+LHVDPENF+LLGNV+V VLA   G
Sbjct: 61   VKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P+VQA++QK+V GVA+AL+ +YH
Sbjct: 121  KEFTPEVQASWQKMVTGVASALSSRYH 147


>ref|NP_000550.2| hemoglobin subunit gamma-1 [Homo sapiens].
          Length = 147

 Score =  219 bits (557), Expect = 8e-57
 Identities = 101/147 (68%), Positives = 123/147 (83%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            M H + E+K  +  LWGKVNV++ GGE LGRLLVVYPWTQRFF+SFG+LS+A A+MGNPK
Sbjct: 1    MGHFTEEDKATITSLWGKVNVEDAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL S  D  KHLD+LKGTFA+LSELHCD+LHVDPENF+LLGNV+V VLA   G
Sbjct: 61   VKAHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P+VQA++QK+V  VA+AL+ +YH
Sbjct: 121  KEFTPEVQASWQKMVTAVASALSSRYH 147


>ref|NP_000508.1| hemoglobin subunit alpha [Homo sapiens].
          Length = 142

 Score =  102 bits (255), Expect = 8e-22
 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  +K  V   WGKV  +  E G EAL R+ + +P T+ +F  F DLS+     G+ +V
Sbjct: 3    LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GSAQV 56

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            K HGKKV  + ++ + H+D++    + LS+LH  +L VDP NF+LL + ++V LA  L  
Sbjct: 57   KGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPA 116

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            +F P V A+  K +A V+  L  KY
Sbjct: 117  EFTPAVHASLDKFLASVSTVLTSKY 141


>ref|NP_000549.1| hemoglobin subunit alpha [Homo sapiens].
          Length = 142

 Score =  102 bits (255), Expect = 8e-22
 Identities = 57/145 (39%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  +K  V   WGKV  +  E G EAL R+ + +P T+ +F  F DLS+     G+ +V
Sbjct: 3    LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GSAQV 56

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            K HGKKV  + ++ + H+D++    + LS+LH  +L VDP NF+LL + ++V LA  L  
Sbjct: 57   KGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPA 116

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            +F P V A+  K +A V+  L  KY
Sbjct: 117  EFTPAVHASLDKFLASVSTVLTSKY 141


>ref|NP_005323.1| hemoglobin subunit zeta [Homo sapiens].
          Length = 142

 Score = 99.8 bits (247), Expect = 7e-21
 Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNV--DEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            L+  E+  ++ +W K++   D +G E L RL + +P T+ +F  F      D   G+ ++
Sbjct: 3    LTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQL 56

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            +AHG KV+ +  D +K +D++ G  +KLSELH   L VDP NF+LL + ++V LA R   
Sbjct: 57   RAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPA 116

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            DF  +  AA+ K ++ V++ L  KY
Sbjct: 117  DFTAEAHAAWDKFLSVVSSVLTEKY 141


>ref|NP_005322.1| hemoglobin subunit theta-1 [Homo sapiens].
          Length = 142

 Score = 97.1 bits (240), Expect = 4e-20
 Identities = 57/145 (39%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LSAE++  V  LW K+  NV     EAL R  + +P T+ +F      S+ D   G+ +V
Sbjct: 3    LSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYF------SHLDLSPGSSQV 56

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            +AHG+KV  + S  ++ LD+L    + LS LH  QL VDP +F+LLG+ ++V LAR    
Sbjct: 57   RAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPG 116

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            DF+P +QA+  K ++ V +AL  +Y
Sbjct: 117  DFSPALQASLDKFLSHVISALVSEY 141


>ref|NP_001003938.1| hemoglobin subunit mu [Homo sapiens].
          Length = 141

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LSA+E+  +  +W  +   E   G E L RL  VYP T+ +F       +A  ++     
Sbjct: 2    LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLL----- 56

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
             +HG+++L +    ++H+DNL+   + L++LH   L VDP NF LL     VVLA  L  
Sbjct: 57   -SHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQD 115

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            +F   +QAA+ K + GVA  L  KY
Sbjct: 116  EFTVQMQAAWDKFLTGVAVVLTEKY 140


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,959,507
Number of extensions: 1120499
Number of successful extensions: 4869
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4794
Number of HSP's successfully gapped: 13
Length of query: 558
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 450
Effective length of database: 14,737,052
Effective search space: 6631673400
Effective search space used: 6631673400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001127
         (1674 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001188320.1| hemoglobin subunit beta-1-like [Mus musculus].    244   1e-64
Alignment   gi|XP_003084762.1| PREDICTED: hemoglobin subunit beta-1-like is...   244   1e-64
Alignment   gi|XP_003084764.1| PREDICTED: hemoglobin subunit beta-1-like is...   244   1e-64
Alignment   gi|NP_032246.2| hemoglobin subunit beta-1 [Mus musculus].            244   1e-64
Alignment   gi|NP_058652.1| hemoglobin subunit beta-2 [Mus musculus].            241   1e-63
Alignment   gi|XP_003086670.1| PREDICTED: hemoglobin subunit beta-1-like is...   241   2e-63
Alignment   gi|XP_003086669.1| PREDICTED: hemoglobin subunit beta-1-like is...   241   2e-63
Alignment   gi|XP_003086671.1| PREDICTED: hemoglobin subunit beta-1-like is...   241   2e-63
Alignment   gi|XP_003086668.1| PREDICTED: hemoglobin subunit beta-1-like is...   241   2e-63
Alignment   gi|XP_003085432.1| PREDICTED: hemoglobin subunit beta-1-like is...   241   2e-63

>ref|NP_001188320.1| hemoglobin subunit beta-1-like [Mus musculus].
          Length = 147

 Score =  244 bits (623), Expect = 1e-64
 Identities = 117/147 (79%), Positives = 129/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVAAALAHKYH 147


>ref|XP_003084762.1| PREDICTED: hemoglobin subunit beta-1-like isoform 2 [Mus musculus].
          Length = 147

 Score =  244 bits (623), Expect = 1e-64
 Identities = 117/147 (79%), Positives = 129/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVAAALAHKYH 147


>ref|XP_003084764.1| PREDICTED: hemoglobin subunit beta-1-like isoform 4 [Mus musculus].
          Length = 147

 Score =  244 bits (623), Expect = 1e-64
 Identities = 117/147 (79%), Positives = 129/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVAAALAHKYH 147


>ref|NP_032246.2| hemoglobin subunit beta-1 [Mus musculus].
          Length = 147

 Score =  244 bits (623), Expect = 1e-64
 Identities = 117/147 (79%), Positives = 129/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV GLWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVAAALAHKYH 147


>ref|NP_058652.1| hemoglobin subunit beta-2 [Mus musculus].
          Length = 147

 Score =  241 bits (615), Expect = 1e-63
 Identities = 116/147 (78%), Positives = 128/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV  LW KVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGNPK
Sbjct: 1    MVHLTDAEKSAVSCLWAKVNPDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F++GLK+LDNLKGTFA LSELHCD+LHVDPENFRLLGN IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNEGLKNLDNLKGTFASLSELHCDKLHVDPENFRLLGNAIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVATALAHKYH 147


>ref|XP_003086670.1| PREDICTED: hemoglobin subunit beta-1-like isoform 3 [Mus musculus].
          Length = 147

 Score =  241 bits (614), Expect = 2e-63
 Identities = 116/147 (78%), Positives = 128/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV  LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVATALAHKYH 147


>ref|XP_003086669.1| PREDICTED: hemoglobin subunit beta-1-like isoform 2 [Mus musculus].
          Length = 147

 Score =  241 bits (614), Expect = 2e-63
 Identities = 116/147 (78%), Positives = 128/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV  LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVATALAHKYH 147


>ref|XP_003086671.1| PREDICTED: hemoglobin subunit beta-1-like isoform 4 [Mus musculus].
          Length = 147

 Score =  241 bits (614), Expect = 2e-63
 Identities = 116/147 (78%), Positives = 128/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV  LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVATALAHKYH 147


>ref|XP_003086668.1| PREDICTED: hemoglobin subunit beta-1-like isoform 1 [Mus musculus].
          Length = 147

 Score =  241 bits (614), Expect = 2e-63
 Identities = 116/147 (78%), Positives = 128/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV  LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVATALAHKYH 147


>ref|XP_003085432.1| PREDICTED: hemoglobin subunit beta-1-like isoform 3 [Mus musculus].
          Length = 147

 Score =  241 bits (614), Expect = 2e-63
 Identities = 116/147 (78%), Positives = 128/147 (87%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHL+  EK AV  LWGKVN DEVGGEALGRLLVVYPWTQR+F+SFGDLS+A A+MGN K
Sbjct: 1    MVHLTDAEKAAVSCLWGKVNSDEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKV+ +F+DGL HLD+LKGTFA LSELHCD+LHVDPENFRLLGN+IV+VL   LG
Sbjct: 61   VKAHGKKVITAFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             DF P  QAAFQKVVAGVA ALAHKYH
Sbjct: 121  KDFTPAAQAAFQKVVAGVATALAHKYH 147


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,843,053
Number of extensions: 957188
Number of successful extensions: 3878
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3818
Number of HSP's successfully gapped: 44
Length of query: 558
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 452
Effective length of database: 12,433,743
Effective search space: 5620051836
Effective search space used: 5620051836
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001127
         (1674 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001138313.1| hemoglobin subunit beta [Sus scrofa].             297   1e-80
Alignment   gi|XP_003129563.1| PREDICTED: hemoglobin subunit beta-like [Sus...   266   3e-71
Alignment   gi|NP_999612.1| hemoglobin subunit epsilon [Sus scrofa].             239   3e-63
Alignment   gi|XP_003357211.1| PREDICTED: LOW QUALITY PROTEIN: hemoglobin s...   139   6e-33
Alignment   gi|NP_999401.1| myoglobin [Sus scrofa].                               64   2e-10
Alignment   gi|XP_003131227.2| PREDICTED: cytoglobin-like [Sus scrofa].           63   4e-10

>ref|NP_001138313.1| hemoglobin subunit beta [Sus scrofa].
          Length = 147

 Score =  297 bits (761), Expect = 1e-80
 Identities = 146/147 (99%), Positives = 147/147 (100%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK
Sbjct: 1    MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG
Sbjct: 61   VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
            HDFNP+VQAAFQKVVAGVANALAHKYH
Sbjct: 121  HDFNPNVQAAFQKVVAGVANALAHKYH 147


>ref|XP_003129563.1| PREDICTED: hemoglobin subunit beta-like [Sus scrofa].
          Length = 144

 Score =  266 bits (679), Expect = 3e-71
 Identities = 131/144 (90%), Positives = 138/144 (95%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVHLSAEE  AVLGL GKVN+ E+G +ALG+LLVVYPWTQRFFESFGDLSNADAVMGNPK
Sbjct: 1    MVHLSAEESAAVLGLQGKVNMVELGAKALGKLLVVYPWTQRFFESFGDLSNADAVMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVV+LARR G
Sbjct: 61   VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVILARRFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAH 1150
            +DFNPD+QAAFQKVVAGVANALAH
Sbjct: 121  NDFNPDLQAAFQKVVAGVANALAH 144


>ref|NP_999612.1| hemoglobin subunit epsilon [Sus scrofa].
          Length = 147

 Score =  239 bits (610), Expect = 3e-63
 Identities = 109/147 (74%), Positives = 131/147 (89%)
 Frame = +2

Query: 719  MVHLSAEEKEAVLGLWGKVNVDEVGGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPK 898
            MVH +AEEK  + GLWGKVNV+E GG+A+GRLLVVYPWTQRFF+SFG++S+  A+MGNPK
Sbjct: 1    MVHFTAEEKSVITGLWGKVNVEETGGQAVGRLLVVYPWTQRFFDSFGNMSSPSAIMGNPK 60

Query: 899  VKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLG 1078
            VKAHGKKVL +F D +K++DNLKGTFAKLSELHCD+LHVDPENFRLLGN+IV++LA   G
Sbjct: 61   VKAHGKKVLTAFGDAVKNMDNLKGTFAKLSELHCDKLHVDPENFRLLGNMIVIILASHFG 120

Query: 1079 HDFNPDVQAAFQKVVAGVANALAHKYH 1159
             +F P+VQAA+QK+VAGVA ALAHKYH
Sbjct: 121  GEFTPEVQAAWQKLVAGVATALAHKYH 147


>ref|XP_003357211.1| PREDICTED: LOW QUALITY PROTEIN: hemoglobin subunit epsilon-4-like
            [Sus scrofa].
          Length = 132

 Score =  139 bits (349), Expect = 6e-33
 Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
 Frame = +2

Query: 827  PWTQRFFESFGDLSNADAVMGNPKVKAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQ 1006
            P TQRFF++FG LS+   VMGNP+VKAHG+KVL SF + LKH  +LKGT A LSELHC +
Sbjct: 21   PRTQRFFDNFGTLSSDSGVMGNPRVKAHGRKVLTSFXNALKHTHDLKGTLACLSELHCVK 80

Query: 1007 LHVDPENFRLLG-NVIVVVLARRLGHDFNPDVQAAFQKVVAGVANALAHKYH 1159
            L VDPENFRLLG   I+ VLA     DF P  QAA+QK+   +ANALAHKYH
Sbjct: 81   LQVDPENFRLLGAEQILTVLATHFSKDFTPQRQAAWQKLTDDMANALAHKYH 132


>ref|NP_999401.1| myoglobin [Sus scrofa].
          Length = 154

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
 Frame = +2

Query: 728  LSAEEKEAVLGLWGKVNVDEV--GGEALGRLLVVYPWTQRFFESFGDLSNADAVMGNPKV 901
            LS  E + VL +WGKV  D    G E L RL   +P T   F+ F  L + D +  +  +
Sbjct: 3    LSDGEWQLVLNVWGKVEADVAGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDL 62

Query: 902  KAHGKKVLQSFSDGLKHLDNLKGTFAKLSELHCDQLHVDPENFRLLGNVIVVVLARRLGH 1081
            K HG  VL +    LK   + +     L++ H  +  +  +    +   I+ VL  +   
Sbjct: 63   KKHGNTVLTALGGILKKKGHHEAELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSKHPG 122

Query: 1082 DFNPDVQAAFQKVVAGVANALAHKY 1156
            DF  D Q A  K +    N +A KY
Sbjct: 123  DFGADAQGAMSKALELFRNDMAAKY 147


>ref|XP_003131227.2| PREDICTED: cytoglobin-like [Sus scrofa].
          Length = 190

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 36/150 (24%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
 Frame = +2

Query: 686  PCSLATAQTDNMVHLSAEEKEAVLGLWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFG 859
            P  +   + +    LS  E++AV   W ++  N ++VG   L R  V +P  +++F  F 
Sbjct: 5    PGEMEIERRERSEELSEAERKAVQATWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFK 64

Query: 860  DLSNADAVMGNPKVKAHGKKVLQSFSDGLKHL---DNLKGTFAKLSELHCDQLHVDPENF 1030
             + +   +  +P+++ H  +V+ + +  +++L   + +    A + + H  +  V+P  F
Sbjct: 65   HMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPEKVSSVLALVGKAHALKHKVEPVYF 124

Query: 1031 RLLGNVIVVVLARRLGHDFNPDVQAAFQKV 1120
            ++L  VI+ V+A    +DF P+ Q A+ K+
Sbjct: 125  KILSGVILEVIAEEFANDFPPETQRAWAKL 154


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,118,133
Number of extensions: 2396547
Number of successful extensions: 3146
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3115
Number of HSP's successfully gapped: 6
Length of query: 558
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 454
Effective length of database: 8,754,644
Effective search space: 3974608376
Effective search space used: 3974608376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001127
         (1674 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         502   e-139

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  502 bits (253), Expect = e-139
 Identities = 253/253 (100%)
 Strand = Plus / Minus

                                                                           
Query: 1033    gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 1092
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633234 gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 5633175

                                                                           
Query: 1093    ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 1152
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633174 ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 5633115

                                                                           
Query: 1153    gtaccactaagttccccttcctgatttccaggaggagccctttttcctctgaacccaaaa 1212
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633114 gtaccactaagttccccttcctgatttccaggaggagccctttttcctctgaacccaaaa 5633055

                                                                           
Query: 1213    actggatatggaaatattatgaagagttttgagcatctggcctctgcgtaataaaaacat 1272
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633054 actggatatggaaatattatgaagagttttgagcatctggcctctgcgtaataaaaacat 5632995

                            
Query: 1273    ttattttcattgc 1285
               |||||||||||||
Sbjct: 5632994 ttattttcattgc 5632982



 Score =  440 bits (222), Expect = e-120
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                           
Query: 808     caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 867
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634105 caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 5634046

                                                                           
Query: 868     caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 927
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634045 caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 5633986

                                                                           
Query: 928     gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 987
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633985 gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 5633926

                                                             
Query: 988     tgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 1033
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5633925 cgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 5633880



 Score =  440 bits (222), Expect = e-120
 Identities = 225/226 (99%)
 Strand = Plus / Minus

                                                                           
Query: 808     caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 867
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5642006 caggctgctggttgtctacccctggactcagaggttcttcgagtcctttggggacctgtc 5641947

                                                                           
Query: 868     caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 927
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641946 caatgccgatgccgtcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctcca 5641887

                                                                           
Query: 928     gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 987
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641886 gtccttcagtgacggcctgaaacatctcgacaacctcaagggcacctttgctaagctgag 5641827

                                                             
Query: 988     tgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 1033
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5641826 cgagctgcactgtgaccagctgcacgtggatcctgagaacttcagg 5641781



 Score =  280 bits (141), Expect = 2e-72
 Identities = 144/145 (99%)
 Strand = Plus / Minus

                                                                           
Query: 667     acatttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgca 726
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634363 acatttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgca 5634304

                                                                           
Query: 727     tctgtctgctgaagagaaggaggccgtcctcggcctgtggggcaaagtgaatgtggacga 786
               |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634303 tctgtctgctgaggagaaggaggccgtcctcggcctgtggggcaaagtgaatgtggacga 5634244

                                        
Query: 787     agttggtggtgaggccctgggcagg 811
               |||||||||||||||||||||||||
Sbjct: 5634243 agttggtggtgaggccctgggcagg 5634219



 Score =  182 bits (92), Expect = 4e-43
 Identities = 119/128 (92%)
 Strand = Plus / Minus

                                                                           
Query: 1033    gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 1092
               |||||||||||||||||| |||||| | |||||||||||| ||||| |||||||||||||
Sbjct: 5641130 gctcctgggcaacgtgattgtggttatactggctcgccgctttggcaatgacttcaaccc 5641071

                                                                           
Query: 1093    ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 1152
                ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5641070 agacctgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacta 5641011

                       
Query: 1153    gtaccact 1160
               ||||||||
Sbjct: 5641010 gtaccact 5641003



 Score =  159 bits (80), Expect = 6e-36
 Identities = 128/144 (88%)
 Strand = Plus / Minus

                                                                           
Query: 671     ttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgcatctg 730
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5642271 ttgcttctgacacaaccgtgttcactagcaactgcacaaacagacaacatggtgcatctg 5642212

                                                                           
Query: 731     tctgctgaagagaaggaggccgtcctcggcctgtggggcaaagtgaatgtggacgaagtt 790
               |||||||| |||  ||  || ||||||||||||  ||||||||||||  |||  ||| ||
Sbjct: 5642211 tctgctgaggagtcggctgctgtcctcggcctgcagggcaaagtgaacatggttgaactt 5642152

                                       
Query: 791     ggtggtgaggccctgggcaggctg 814
               |||| | |||||||||||| ||||
Sbjct: 5642151 ggtgctaaggccctgggcaagctg 5642128



 Score =  135 bits (68), Expect = 9e-29
 Identities = 131/152 (86%)
 Strand = Plus / Minus

                                                                           
Query: 882     tcatgggcaatcccaaggtgaaggcccacggcaagaaggtgctccagtccttcagtgacg 941
               ||||||| || |||||||| |||||||||||||||||||||||    |||||| | ||||
Sbjct: 5652346 tcatgggaaaccccaaggtcaaggcccacggcaagaaggtgctgacctccttcggagacg 5652287

                                                                           
Query: 942     gcctgaaacatctcgacaacctcaagggcacctttgctaagctgagtgagctgcactgtg 1001
                  | ||  |  | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5652286 cggtcaagaacatggacaacctcaagggcacctttgcgaagctgagtgagctgcactgtg 5652227

                                               
Query: 1002    accagctgcacgtggatcctgagaacttcagg 1033
               || ||||||| |||||||||||||||||||||
Sbjct: 5652226 acaagctgcatgtggatcctgagaacttcagg 5652195



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 106/128 (82%)
 Strand = Plus / Minus

                                                                           
Query: 1033    gctcctgggcaacgtgatagtggttgttctggctcgccgccttggccatgacttcaaccc 1092
               ||||||||||||| |||||||| || ||||||||   | | |||||   || |||| |||
Sbjct: 5650757 gctcctgggcaacatgatagtgattattctggcttctcactttggcggagagttcacccc 5650698

                                                                           
Query: 1093    ggatgtgcaggctgcttttcagaaggtggtggctggtgtggccaatgccctggcccacaa 1152
                || ||||||||||| |  |||||| ||||||||||||| |||| ||| |||||||||||
Sbjct: 5650697 tgaagtgcaggctgcatggcagaagctggtggctggtgttgccactgctctggcccacaa 5650638

                       
Query: 1153    gtaccact 1160
               ||||||||
Sbjct: 5650637 gtaccact 5650630



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                           
Query: 960     acctcaagggcacctttgctaagctgagtgagctgcactgtgaccagctgcacgtggatc 1019
               |||||||||||||||| ||    || |||||||||||||||| | ||||||| |||||||
Sbjct: 5646411 acctcaagggcaccttggcatgtctaagtgagctgcactgtgtcaagctgcaggtggatc 5646352

                             
Query: 1020    ctgagaacttcagg 1033
               ||||||||||||||
Sbjct: 5646351 ctgagaacttcagg 5646338


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,339,385
Number of extensions: 205
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 10
Length of query: 1674
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1652
Effective length of database: 2,808,408,574
Effective search space: 4639490964248
Effective search space used: 4639490964248
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)