Animal-Genome cDNA 20110601C-001160


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001160
         (1138 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776343.1| epididymal secretory protein E1 precursor [Bos ...   231   9e-61

>ref|NP_776343.1| epididymal secretory protein E1 precursor [Bos taurus].
          Length = 149

 Score =  231 bits (589), Expect = 9e-61
 Identities = 101/130 (77%), Positives = 120/130 (92%)
 Frame = +1

Query: 106 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 285
           EPV F+DCGS VGVIKEVNV+PCPTQPC+LH+GQSYSVNVTFTSNTQS+ SKAVVHGIVM
Sbjct: 20  EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVM 79

Query: 286 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 465
           G+P+PFPIP+ DGCKSGI CPI+KD+TY+Y+NKLPVK EYPSIK+VVEW+L DD +Q  F
Sbjct: 80  GIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFF 139

Query: 466 CWQIPVQIES 495
           CWQIP+++E+
Sbjct: 140 CWQIPIEVEA 149


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,667,219
Number of extensions: 1332037
Number of successful extensions: 3972
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3951
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001160
         (1138 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_855001.1| PREDICTED: similar to Epididymal secretory prot...   230   2e-60
Alignment   gi|NP_001003242.1| epididymal secretory protein E1 precursor [C...   228   6e-60

>ref|XP_855001.1| PREDICTED: similar to Epididymal secretory protein E1 precursor
           (Niemann-Pick disease type C2 protein) (hE1) [Canis
           familiaris].
          Length = 149

 Score =  230 bits (587), Expect = 2e-60
 Identities = 106/129 (82%), Positives = 117/129 (90%)
 Frame = +1

Query: 106 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 285
           EPVHF+D GS VGVIKE+NVNPCPTQPC+LHKGQSYSVNVTFTSN  S+ SKAVVHGIV+
Sbjct: 20  EPVHFKDGGSAVGVIKELNVNPCPTQPCKLHKGQSYSVNVTFTSNIPSQSSKAVVHGIVL 79

Query: 286 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 465
           GV +PFPIP+ DGCKSGINCPIQKD+TYSYLNKLPVK EYPSIKLVV+W L  DN+Q LF
Sbjct: 80  GVAVPFPIPEADGCKSGINCPIQKDKTYSYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLF 139

Query: 466 CWQIPVQIE 492
           CW+IPVQIE
Sbjct: 140 CWEIPVQIE 148


>ref|NP_001003242.1| epididymal secretory protein E1 precursor [Canis lupus familiaris].
          Length = 149

 Score =  228 bits (582), Expect = 6e-60
 Identities = 104/127 (81%), Positives = 115/127 (90%)
 Frame = +1

Query: 112 VHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVMGV 291
           VHF+DCGS VGVIKE+NVNPCP QPC+LHKGQSYSVNVTFTSN  S+ SKAVVHGIV+GV
Sbjct: 22  VHFKDCGSAVGVIKELNVNPCPAQPCKLHKGQSYSVNVTFTSNIPSQSSKAVVHGIVLGV 81

Query: 292 PIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLFCW 471
            +PFPIP+ DGCKSGINCPIQKD+TYSYLNKLPVK EYPSIKLVV+W L  DN+Q LFCW
Sbjct: 82  AVPFPIPEADGCKSGINCPIQKDKTYSYLNKLPVKNEYPSIKLVVQWMLLGDNNQHLFCW 141

Query: 472 QIPVQIE 492
           +IPVQIE
Sbjct: 142 EIPVQIE 148


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,745,584
Number of extensions: 1376428
Number of successful extensions: 4192
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4190
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001160
         (1138 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006423.1| epididymal secretory protein E1 precursor [Homo...   241   9e-64

>ref|NP_006423.1| epididymal secretory protein E1 precursor [Homo sapiens].
          Length = 151

 Score =  241 bits (615), Expect = 9e-64
 Identities = 111/130 (85%), Positives = 121/130 (93%)
 Frame = +1

Query: 106 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 285
           EPV F+DCGS  GVIKEVNV+PCPTQPCQL KGQSYSVNVTFTSN QSK SKAVVHGI+M
Sbjct: 20  EPVQFKDCGSVDGVIKEVNVSPCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILM 79

Query: 286 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 465
           GVP+PFPIP+PDGCKSGINCPIQKD+TYSYLNKLPVK+EYPSIKLVVEW+LQDD +Q LF
Sbjct: 80  GVPVPFPIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLF 139

Query: 466 CWQIPVQIES 495
           CW+IPVQI S
Sbjct: 140 CWEIPVQIVS 149


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,865,386
Number of extensions: 1356903
Number of successful extensions: 3984
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3966
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001160
         (1138 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_075898.1| epididymal secretory protein E1 precursor [Mus ...   230   2e-60

>ref|NP_075898.1| epididymal secretory protein E1 precursor [Mus musculus].
          Length = 149

 Score =  230 bits (586), Expect = 2e-60
 Identities = 103/130 (79%), Positives = 116/130 (89%)
 Frame = +1

Query: 106 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 285
           EP+HF+DCGS VGVIKEVNV+PCPT PCQLHKGQSYSVN+TFTS TQS+ S A+VHGI+ 
Sbjct: 20  EPLHFKDCGSKVGVIKEVNVSPCPTDPCQLHKGQSYSVNITFTSGTQSQNSTALVHGILE 79

Query: 286 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 465
           G+ +PFPIP+PDGCKSGINCPIQKD+ YSYLNKLPVK EYPSIKLVVEWKL+DD    LF
Sbjct: 80  GIRVPFPIPEPDGCKSGINCPIQKDKVYSYLNKLPVKNEYPSIKLVVEWKLEDDKKNNLF 139

Query: 466 CWQIPVQIES 495
           CW+IPVQI S
Sbjct: 140 CWEIPVQITS 149


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,585,227
Number of extensions: 1138037
Number of successful extensions: 3376
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3368
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001160
         (1138 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999371.1| epididymal secretory protein E1 precursor [Sus ...   281   6e-76

>ref|NP_999371.1| epididymal secretory protein E1 precursor [Sus scrofa].
          Length = 149

 Score =  281 bits (718), Expect = 6e-76
 Identities = 130/130 (100%), Positives = 130/130 (100%)
 Frame = +1

Query: 106 EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 285
           EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM
Sbjct: 20  EPVHFRDCGSGVGVIKEVNVNPCPTQPCQLHKGQSYSVNVTFTSNTQSKGSKAVVHGIVM 79

Query: 286 GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 465
           GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF
Sbjct: 80  GVPIPFPIPDPDGCKSGINCPIQKDQTYSYLNKLPVKAEYPSIKLVVEWKLQDDNDQCLF 139

Query: 466 CWQIPVQIES 495
           CWQIPVQIES
Sbjct: 140 CWQIPVQIES 149


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,117,382
Number of extensions: 858886
Number of successful extensions: 2486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2484
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001160
         (1138 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                        1269   0.0  

>Sscrofa_Chr07 
||          Length = 134764511

 Score = 1269 bits (640), Expect = 0.0
 Identities = 705/731 (96%), Gaps = 4/731 (0%)
 Strand = Plus / Minus

                                                                             
Query: 412       ataaaactggtggtggagtggaaacttcaggatgacaatgaccagtgtctcttctgctgg 471
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573933 ataaaactggtggtggagtggaaacttcaggatgacaatgaccagtgtctcttctgctgg 103573874

                                                                             
Query: 472       caaatcccagtacagattgaaagctagagctcttcagtgccactctgtgcatctgggggt 531
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573873 caaatcccagtacagattgaaagctagagctcttcagtgccactctgtgcatctgggggt 103573814

                                                                             
Query: 532       gacagaacagggatggagggaggggaggagaaatcaagtctaaactcactcagtgccata 591
                 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573813 gacagagcagggatggagggaggggaggagaaatcaagtctaaactcactcagtgccata 103573754

                                                                             
Query: 592       agatgaaaggaatttcccagaaggctgtttcatgcctctgaac-ctccaaaagcaactaa 650
                 ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 103573753 agatgaaaggaatttcctagaaggctgtatcatgcctctgaacgctccaaaagcaactaa 103573694

                                                                             
Query: 651       gaccctatttcctgagagctcagaactgttgcccttgtaacatcctttgtttaagggttg 710
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573693 gaccctatttcctgagagctcagaactgttgcccttgtaacatcctttgtttaagggttg 103573634

                                                                             
Query: 711       aaggagaggagggcatgagaatgtagggattgatttaattgccttcagnnnnnnnnnnnn 770
                 ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 103573633 aaggagaggagggcatgagaatgtagggattgatttaattgccttcagtttttgtttttc 103573574

                                                                             
Query: 771       nnnnnnn---ggaatcaggagggtccaaccagacaagacccgaatgaggctgcttgggga 827
                           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573573 ttttccttttggaatcaggagggtccaaccagacaagacccgaatgaggctgcttgggga 103573514

                                                                             
Query: 828       taccggctaacttgccctagggttaccgggccttgcagcggaggacgggtttcaaaccac 887
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573513 taccggctaacttgccctagggttaccgggccttgcagcggaggacgggtttcaaaccac 103573454

                                                                             
Query: 888       atcccactagctgggatctcccacctgcaggttcctcctctccacgtgcctcagtgcatc 947
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573453 atcccactagctgggatctcccacctgcaggttcctcctctccacgtgcctcagtgcatc 103573394

                                                                             
Query: 948       tggccattgagcctccttcctgacgctcggcatcacctctagctctgctgctttacgggt 1007
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573393 tggccattgagcctccttcctgacgctcggcatcacctctagctctgctgctttacgggt 103573334

                                                                             
Query: 1008      gcagccgtgtccaatgttgcagtgggggaaggtgttccatgacagaaattcacctccaat 1067
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573333 gcagccgtgtccaatgttgcagtgggggaaggtgttccatgacagaaattcacctccaat 103573274

                                                                             
Query: 1068      ggctggttctatgtggttagctcatgtctccttttctatcttaggcggttttcattaaat 1127
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103573273 ggctggttctatgtggttagctcatgtctccttttctatcttaggcggttttcattaaat 103573214

                            
Query: 1128      gtagcacttcc 1138
                 |||||||||||
Sbjct: 103573213 gtagcacttcc 103573203



 Score =  335 bits (169), Expect = 3e-89
 Identities = 172/173 (99%)
 Strand = Plus / Minus

                                                                             
Query: 239       acactcagtcgaaaggcagcaaagccgtggtgcacggcatcgtgatgggtgtcccgattc 298
                 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 103576579 acactcagtcgaaaggcagcaaagccgtggtgcacggcatcgtgatgggcgtcccgattc 103576520

                                                                             
Query: 299       cgtttcccatccccgaccccgatggttgtaagagcggaatcaactgccccatccagaaag 358
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103576519 cgtttcccatccccgaccccgatggttgtaagagcggaatcaactgccccatccagaaag 103576460

                                                                      
Query: 359       accagacctacagctacctgaataaactgccagtgaaggccgagtacccctct 411
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103576459 accagacctacagctacctgaataaactgccagtgaaggccgagtacccctct 103576407



 Score =  260 bits (131), Expect = 1e-66
 Identities = 131/131 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         cgcggcagctggctttccttccgtgagcttgaaacctcctgagctgcgatgcatttcttg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582376 cgcggcagctggctttccttccgtgagcttgaaacctcctgagctgcgatgcatttcttg 103582317

                                                                             
Query: 61        gccgctgcgttcctgctcctgacactcagcgcttctgccctggccgagccggtgcatttc 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103582316 gccgctgcgttcctgctcctgacactcagcgcttctgccctggccgagccggtgcatttc 103582257

                            
Query: 121       agggactgcgg 131
                 |||||||||||
Sbjct: 103582256 agggactgcgg 103582246



 Score =  208 bits (105), Expect = 5e-51
 Identities = 108/109 (99%)
 Strand = Plus / Minus

                                                                             
Query: 130       ggctcgggggttggagtgataaaggaagtgaatgttaacccatgtcccacccagccctgc 189
                 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 103578566 ggctcgggggttggagtgataaaggaagtgaatgtgaacccatgtcccacccagccctgc 103578507

                                                                  
Query: 190       cagctgcacaaaggacagtcttacagtgtgaatgtcaccttcaccagta 238
                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103578506 cagctgcacaaaggacagtcttacagtgtgaatgtcaccttcaccagta 103578458


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,390,123
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 5
Length of query: 1138
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1117
Effective length of database: 2,808,413,156
Effective search space: 3136997495252
Effective search space used: 3136997495252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)