Animal-Genome cDNA 20110601C-001190

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001190
         (1922 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776394.2| vimentin [Bos taurus].                               748   0.0  
Alignment   gi|NP_001075044.1| desmin [Bos taurus].                              491   e-139
Alignment   gi|NP_776490.2| glial fibrillary acidic protein [Bos taurus].        461   e-129
Alignment   gi|NP_001095848.1| peripherin [Bos taurus].                          447   e-125
Alignment   gi|NP_001069426.1| alpha-internexin [Bos taurus].                    347   3e-95
Alignment   gi|NP_776546.1| neurofilament light polypeptide [Bos taurus].        326   5e-89
Alignment   gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide...   313   3e-85
Alignment   gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B...   313   3e-85
Alignment   gi|XP_001252037.1| PREDICTED: neurofilament triplet M protein [...   313   3e-85
Alignment   gi|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide ...   263   4e-70

>ref|NP_776394.2| vimentin [Bos taurus].
          Length = 466

 Score =  748 bits (1931), Expect = 0.0
 Identities = 396/453 (87%), Positives = 402/453 (88%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRP+TSR+LYTSSPGGVYATRSSAVRLRS 
Sbjct: 14   MFGGPGTASRPSSTRSYVTTSTRTYSLGSALRPTTSRTLYTSSPGGVYATRSSAVRLRSG 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQ+LTCEVDALKGTNESLERQMREMEENF+VEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPL 433

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|NP_001075044.1| desmin [Bos taurus].
          Length = 470

 Score =  491 bits (1264), Expect = e-139
 Identities = 255/409 (62%), Positives = 318/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 343  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANY 522
            G + A+R  + R+ SS     LL    DFSLADA+N EF  TRTNEKVELQELNDRFANY
Sbjct: 67   GALRASRLGSTRVPSSYGAGELL----DFSLADAVNQEFLTTRTNEKVELQELNDRFANY 122

Query: 523  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 702
            I+KVRFLEQQN  L AE+ +LKG+  +R+ ++YEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 123  IEKVRFLEQQNAALAAEVNRLKGREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDN 182

Query: 703  LAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 882
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 183  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 242

Query: 883  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1062
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 243  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 302

Query: 1063 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1242
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 303  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 362

Query: 1243 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXX 1422
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI      
Sbjct: 363  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 422

Query: 1423 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1566
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 423  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470


>ref|NP_776490.2| glial fibrillary acidic protein [Bos taurus].
          Length = 428

 Score =  461 bits (1185), Expect = e-129
 Identities = 239/426 (56%), Positives = 316/426 (74%), Gaps = 7/426 (1%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYA-------TRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNT 468
            S +R  Y SS   V         TR S  R+   +P        VDFSLA A+N+ FK T
Sbjct: 8    SATRRSYVSSSEMVVGGRRLGPGTRLSLARMPPPLPA------RVDFSLAGALNSGFKET 61

Query: 469  RTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRR 648
            R +E+ E+ ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  ++L D+Y+ E+RELR 
Sbjct: 62   RASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELRL 121

Query: 649  QVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLD 828
            ++DQLT + AR+EVERDNLA+D+  LR+KLQ+ET QR EAE+ L ++RQ+ D A+LARLD
Sbjct: 122  RLDQLTANSARLEVERDNLAQDLGTLRQKLQDETNQRLEAENNLAAYRQEADEATLARLD 181

Query: 829  LERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESV 1008
            LERK+ESL+EEI FL+K+H+                 +MDV+KPDLTAALR++R QYE+V
Sbjct: 182  LERKIESLEEEIRFLRKIHEEEVRELQEQLAQQQVHVEMDVAKPDLTAALREIRTQYEAV 241

Query: 1009 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNES 1188
            A+ N+ EAEEWY+SKFADL++AA RN + LRQAK E+N+YRRQ+Q+LTC++++L+GTNES
Sbjct: 242  ASSNMHEAEEWYRSKFADLNDAAARNAELLRQAKHEANDYRRQLQALTCDLESLRGTNES 301

Query: 1189 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 1368
            LERQMRE EE  A EAA+YQ+ + RL++E Q++K+EMARHL+EYQDLLNVK+ALDIEIAT
Sbjct: 302  LERQMREQEERHAREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIAT 361

Query: 1369 YRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETS 1548
            YRKLLEGEE+RI            RET+L++  + + H KR +++KTVE RDG+VI E+ 
Sbjct: 362  YRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKESK 421

Query: 1549 QHHDDL 1566
            Q H D+
Sbjct: 422  QEHKDV 427


>ref|NP_001095848.1| peripherin [Bos taurus].
          Length = 469

 Score =  447 bits (1150), Expect = e-125
 Identities = 242/429 (56%), Positives = 317/429 (73%), Gaps = 4/429 (0%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRT 474
            S+ R S+SR L ++SPG      S       +   +RL  + +DFS+A+A+N EF  TR+
Sbjct: 35   SSSRFSSSRLLGSASPGSSVRLGSFRGPRAGTGALLRLPSERLDFSMAEALNQEFLATRS 94

Query: 475  NEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQV 654
            NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+RELRR++
Sbjct: 95   NEKQELQELNDRFANFIEKVRFLEQQNAALRGELNQARGQEPARADQLCQQELRELRREL 154

Query: 655  DQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLE 834
            + L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+RL+LE
Sbjct: 155  ELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELE 214

Query: 835  RKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQYESV 1008
            RK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R QYES+
Sbjct: 215  RKIESLMDEIEFLKKLHEEELRDLQLSVESQQVQHVEVEATVKPELTAALRDIRAQYESI 274

Query: 1009 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNES 1188
            AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSLTCEVD L+GTNE+
Sbjct: 275  AAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEA 334

Query: 1189 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 1368
            L RQ+RE+EE FA+EA  YQ    RL++E++ +KEEMARHLREYQ+LLNVKMALDIEIAT
Sbjct: 335  LLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIAT 394

Query: 1369 YRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDG-QVINET 1545
            YRKLLEGEESRI            + T  E  P  +THS++ +LI+T+ETRDG QV+ E+
Sbjct: 395  YRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQETHSRKMVLIRTIETRDGEQVVTES 454

Query: 1546 -SQHHDDLE 1569
              + H +L+
Sbjct: 455  QKEQHSELD 463


>ref|NP_001069426.1| alpha-internexin [Bos taurus].
          Length = 499

 Score =  347 bits (889), Expect = 3e-95
 Identities = 194/376 (51%), Positives = 266/376 (70%), Gaps = 6/376 (1%)
 Frame = +1

Query: 292  GSALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL-LQDAVDFSLADAINTEFKNT 468
            GS    S SRS   SS     A  SSA  L   +   R    D +D S A A   E+K  
Sbjct: 36   GSFRSQSLSRSNVASS-----AACSSASSLGLGLAYRRSPASDGLDLSQAAARTNEYKII 90

Query: 469  RTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMREL 642
            RTNEK +LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +    SR+G+L++ E+R+L
Sbjct: 91   RTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELRDL 150

Query: 643  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLAR 822
            R Q+++ ++ +A+  +ERD LAE++ RLR + +EE+  RE AE  L++ ++DVD A+LAR
Sbjct: 151  RAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLAR 210

Query: 823  LDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX---DMDVSKPDLTAALRDVRQ 993
            LDLE+KVESL +E+AF++++HD                    D+ V+KPDL++ALR++R 
Sbjct: 211  LDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLSSALREIRA 270

Query: 994  QYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALK 1173
            QYES+AAKNLQ AEEWYKSKFA+L+E A R+ +A+R +++E +EYRRQ+Q+ T E++ L+
Sbjct: 271  QYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLR 330

Query: 1174 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 1353
            G NESLERQ+ E+EE  + E A+YQD IG+L+++++N K EMARHLREYQDLLNVKMALD
Sbjct: 331  GANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKSEMARHLREYQDLLNVKMALD 390

Query: 1354 IEIATYRKLLEGEESR 1401
            IEIA YRKLLEGEE+R
Sbjct: 391  IEIAAYRKLLEGEETR 406


>ref|NP_776546.1| neurofilament light polypeptide [Bos taurus].
          Length = 555

 Score =  326 bits (835), Expect = 5e-89
 Identities = 175/368 (47%), Positives = 252/368 (68%), Gaps = 3/368 (0%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVE 489
            ST+RS Y+S    V ++ S      SS   +    +++D S   AI+ + K+ RT EK +
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLESLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 490  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 663
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 664  TNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKV 843
            TN+K  ++ ER+ L E +  L+ + +EE L RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 844  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS-KPDLTAALRDVRQQYESVAAKN 1020
            +SL +EIAFLKK+H+                 +MDVS KPDL+AAL+D+R QYE +AAKN
Sbjct: 214  DSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKN 273

Query: 1021 LQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQ 1200
            +Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q
Sbjct: 274  MQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQ 333

Query: 1201 MREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 1380
            ++E+E+    + +  QDTI +L++E++  K EMAR+L+EYQDLLNVKMALDIEIA YRKL
Sbjct: 334  LQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKL 393

Query: 1381 LEGEESRI 1404
            LEGEE+R+
Sbjct: 394  LEGEETRL 401


>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score =  313 bits (802), Expect = 3e-85
 Identities = 165/368 (44%), Positives = 256/368 (69%), Gaps = 3/368 (0%)
 Frame = +1

Query: 307  PSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKV 486
            PST  S Y  S      T SSA+ L S+   +   Q +   +       ++K +R+NEK 
Sbjct: 45   PSTVSSSYKRSALAPRLTYSSAM-LSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKE 103

Query: 487  ELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQ 660
            +LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y++E+RELR  ++ 
Sbjct: 104  QLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELRATLEM 163

Query: 661  LTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERK 840
            + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D++ +SL +++L++K
Sbjct: 164  VNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKK 223

Query: 841  VESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAALRDVRQQYESVAAK 1017
            V+SLQ+E+AFL+  H+                 +  D  K D++ AL+++R Q ES + +
Sbjct: 224  VQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISTALKEIRSQLESHSDQ 283

Query: 1018 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLER 1197
            N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E+++++GT ESLER
Sbjct: 284  NMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLER 343

Query: 1198 QMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 1377
            Q+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNVKMALDIEIA YRK
Sbjct: 344  QLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRK 403

Query: 1378 LLEGEESR 1401
            LLEGEE+R
Sbjct: 404  LLEGEETR 411


>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score =  313 bits (802), Expect = 3e-85
 Identities = 165/368 (44%), Positives = 256/368 (69%), Gaps = 3/368 (0%)
 Frame = +1

Query: 307  PSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKV 486
            PST  S Y  S      T SSA+ L S+   +   Q +   +       ++K +R+NEK 
Sbjct: 45   PSTVSSSYKRSALAPRLTYSSAM-LSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKE 103

Query: 487  ELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQ 660
            +LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y++E+RELR  ++ 
Sbjct: 104  QLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELRATLEM 163

Query: 661  LTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERK 840
            + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D++ +SL +++L++K
Sbjct: 164  VNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKK 223

Query: 841  VESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAALRDVRQQYESVAAK 1017
            V+SLQ+E+AFL+  H+                 +  D  K D++ AL+++R Q ES + +
Sbjct: 224  VQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISTALKEIRSQLESHSDQ 283

Query: 1018 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLER 1197
            N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E+++++GT ESLER
Sbjct: 284  NMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLER 343

Query: 1198 QMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 1377
            Q+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNVKMALDIEIA YRK
Sbjct: 344  QLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRK 403

Query: 1378 LLEGEESR 1401
            LLEGEE+R
Sbjct: 404  LLEGEETR 411


>ref|XP_001252037.1| PREDICTED: neurofilament triplet M protein [Bos taurus].
          Length = 931

 Score =  313 bits (802), Expect = 3e-85
 Identities = 165/368 (44%), Positives = 256/368 (69%), Gaps = 3/368 (0%)
 Frame = +1

Query: 307  PSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKV 486
            PST  S Y  S      T SSA+ L S+   +   Q +   +       ++K +R+NEK 
Sbjct: 45   PSTVSSSYKRSALAPRLTYSSAM-LSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKE 103

Query: 487  ELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQ 660
            +LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y++E+RELR  ++ 
Sbjct: 104  QLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELRATLEM 163

Query: 661  LTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERK 840
            + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D++ +SL +++L++K
Sbjct: 164  VNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEESSLVKVELDKK 223

Query: 841  VESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAALRDVRQQYESVAAK 1017
            V+SLQ+E+AFL+  H+                 +  D  K D++ AL+++R Q ES + +
Sbjct: 224  VQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISTALKEIRSQLESHSDQ 283

Query: 1018 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLER 1197
            N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E+++++GT ESLER
Sbjct: 284  NMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLER 343

Query: 1198 QMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 1377
            Q+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNVKMALDIEIA YRK
Sbjct: 344  QLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEIAAYRK 403

Query: 1378 LLEGEESR 1401
            LLEGEE+R
Sbjct: 404  LLEGEETR 411


>ref|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like isoform 2
            [Bos taurus].
          Length = 1023

 Score =  263 bits (672), Expect = 4e-70
 Identities = 153/382 (40%), Positives = 225/382 (58%), Gaps = 20/382 (5%)
 Frame = +1

Query: 475  NEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRR 648
            +EK +LQ LNDRFA YIDKVR LE  N+ L  E   L+ Q  G++ +G+LYE E+RE+R 
Sbjct: 91   SEKEQLQVLNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRG 150

Query: 649  QVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLD 828
             V +L   + ++ +E+++L EDI  +R++L +E  QREEAE+  ++  +    A  AR++
Sbjct: 151  AVLRLGAARGQLRLEQEHLLEDIAHVRQRLDDEARQREEAEAATRALARFAQEAEAARVE 210

Query: 829  LERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM----DVSKPDLTAALRDVRQQ 996
            L++K ++LQEE  +L++ H                        D  K D+T+ALR++R Q
Sbjct: 211  LQKKAQALQEECGYLRRHHQEEVGELLGQIQSSSAAQTQAEARDALKCDVTSALREIRAQ 270

Query: 997  YESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKG 1176
             E    ++  ++EEW++ +   LSEAA  N DA+R A++E +EYRRQ+Q+ T E++ LK 
Sbjct: 271  LEGHTVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEISEYRRQLQARTTELETLKS 330

Query: 1177 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDI 1356
            T +SLERQ  E+E+    + A+YQ+ I +L  E++N K EMA  LREYQDLLNVKMALDI
Sbjct: 331  TKDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVKMALDI 390

Query: 1357 EIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH--------------SKRT 1494
            EIA YRKLLEGEE RI                L  +P V TH              S++ 
Sbjct: 391  EIAAYRKLLEGEECRIGFGPSPFLL----PEGLPKIPSVSTHIKVKSEEKIKMVEKSEKE 446

Query: 1495 LLIKTVETRDGQVINETSQHHD 1560
             +I   +T + QV  E ++  +
Sbjct: 447  TVIVEEQTEEVQVTEEVTEEEE 468


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,809,442
Number of extensions: 1415533
Number of successful extensions: 7593
Number of sequences better than 1.0e-05: 177
Number of HSP's gapped: 6832
Number of HSP's successfully gapped: 196
Length of query: 640
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,074,782
Effective search space: 7473709242
Effective search space used: 7473709242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001190
         (1922 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Cani...   751   0.0  
Alignment   gi|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis...   751   0.0  
Alignment   gi|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Cani...   746   0.0  
Alignment   gi|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Cani...   733   0.0  
Alignment   gi|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis...   715   0.0  
Alignment   gi|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis...   672   0.0  
Alignment   gi|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis...   671   0.0  
Alignment   gi|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis...   666   0.0  
Alignment   gi|XP_856309.1| PREDICTED: similar to Vimentin isoform 8 [Canis...   643   0.0  
Alignment   gi|XP_856058.1| PREDICTED: similar to Vimentin isoform 2 [Canis...   629   e-180

>ref|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Canis familiaris].
          Length = 466

 Score =  751 bits (1938), Expect = 0.0
 Identities = 399/453 (88%), Positives = 401/453 (88%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 433

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis familiaris].
          Length = 466

 Score =  751 bits (1938), Expect = 0.0
 Identities = 399/453 (88%), Positives = 401/453 (88%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 433

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Canis familiaris].
          Length = 460

 Score =  746 bits (1927), Expect = 0.0
 Identities = 399/453 (88%), Positives = 401/453 (88%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEAQIQDQHVQI--- 250

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 251  ---DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 307

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 308  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 367

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 368  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 427

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 428  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 460


>ref|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Canis familiaris].
          Length = 465

 Score =  733 bits (1893), Expect = 0.0
 Identities = 393/453 (86%), Positives = 396/453 (87%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR+     EE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRVGAA-GEEM 192

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 193  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 252

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 253  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 312

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 313  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 372

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 373  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 432

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 433  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 465


>ref|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis familiaris].
          Length = 458

 Score =  715 bits (1846), Expect = 0.0
 Identities = 386/453 (85%), Positives = 388/453 (85%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQ  S           NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQPFSFL--------QNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 365

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 366  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 425

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 426  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 458


>ref|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis familiaris].
          Length = 433

 Score =  672 bits (1734), Expect = 0.0
 Identities = 357/398 (89%), Positives = 358/398 (89%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI 1404
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI 411


>ref|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis familiaris].
          Length = 419

 Score =  671 bits (1730), Expect = 0.0
 Identities = 356/397 (89%), Positives = 357/397 (89%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 1401
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 410


>ref|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis familiaris].
          Length = 411

 Score =  666 bits (1718), Expect = 0.0
 Identities = 356/398 (89%), Positives = 357/398 (89%), Gaps = 1/398 (0%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFR-QDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXX 927
            LQREEAESTLQSFR QDVDNASLARLDLERKVESLQEEIAFLKKLHD             
Sbjct: 194  LQREEAESTLQSFRQQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQ 253

Query: 928  XXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA 1107
                DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA
Sbjct: 254  HVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQA 313

Query: 1108 KQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM 1287
            KQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM
Sbjct: 314  KQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNM 373

Query: 1288 KEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 1401
            KEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR
Sbjct: 374  KEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 411


>ref|XP_856309.1| PREDICTED: similar to Vimentin isoform 8 [Canis familiaris].
          Length = 424

 Score =  643 bits (1658), Expect = 0.0
 Identities = 355/453 (78%), Positives = 359/453 (79%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK           N++L    
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSK-----------NESL---- 298

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
                                       ERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 299  ---------------------------ERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 331

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 332  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPL 391

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 392  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 424


>ref|XP_856058.1| PREDICTED: similar to Vimentin isoform 2 [Canis familiaris].
          Length = 404

 Score =  629 bits (1623), Expect = e-180
 Identities = 338/397 (85%), Positives = 343/397 (86%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGG YATRSSAVRLRSS
Sbjct: 14   MFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK   + 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKRGGKR 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
              R++         +DVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  RVRDKG------IAEDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQH 247

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 248  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 307

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 308  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 367

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 1401
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR
Sbjct: 368  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 404


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,365,794
Number of extensions: 1447431
Number of successful extensions: 8836
Number of sequences better than 1.0e-05: 246
Number of HSP's gapped: 7697
Number of HSP's successfully gapped: 320
Length of query: 640
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 531
Effective length of database: 15,240,880
Effective search space: 8092907280
Effective search space used: 8092907280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001190
         (1922 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_003371.2| vimentin [Homo sapiens].                             746   0.0  
Alignment   gi|NP_001918.3| desmin [Homo sapiens].                               491   e-138
Alignment   gi|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo...   453   e-127
Alignment   gi|NP_006253.2| peripherin [Homo sapiens].                           450   e-126
Alignment   gi|NP_001229305.1| glial fibrillary acidic protein isoform 3 [H...   415   e-116
Alignment   gi|NP_001124491.1| glial fibrillary acidic protein isoform 2 [H...   415   e-116
Alignment   gi|NP_116116.1| alpha-internexin [Homo sapiens].                     347   3e-95
Alignment   gi|NP_006149.2| neurofilament light polypeptide [Homo sapiens].      327   2e-89
Alignment   gi|NP_005373.2| neurofilament medium polypeptide isoform 1 [Hom...   313   3e-85
Alignment   gi|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].      269   6e-72

>ref|NP_003371.2| vimentin [Homo sapiens].
          Length = 466

 Score =  746 bits (1925), Expect = 0.0
 Identities = 396/453 (87%), Positives = 401/453 (88%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLY SSPGGVYATRSSAVRLRSS
Sbjct: 14   MFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGVYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAE+TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH+              
Sbjct: 194  LQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               D+DVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QES EYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESTEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNL+SLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLDSLPL 433

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|NP_001918.3| desmin [Homo sapiens].
          Length = 470

 Score =  491 bits (1263), Expect = e-138
 Identities = 256/409 (62%), Positives = 316/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 343  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANY 522
            G + A+R    R  SS     LL    DFSLADA+N EF  TRTNEKVELQELNDRFANY
Sbjct: 67   GSLRASRLGTTRTPSSYGAGELL----DFSLADAVNQEFLTTRTNEKVELQELNDRFANY 122

Query: 523  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 702
            I+KVRFLEQQN  L AE+ +LKG+  +R+ +LYEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 123  IEKVRFLEQQNAALAAEVNRLKGREPTRVAELYEEELRELRRQVEVLTNQRARVDVERDN 182

Query: 703  LAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 882
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 183  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 242

Query: 883  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1062
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 243  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 302

Query: 1063 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1242
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 303  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 362

Query: 1243 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXX 1422
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI      
Sbjct: 363  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 422

Query: 1423 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1566
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 423  YSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 470


>ref|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo sapiens].
          Length = 432

 Score =  453 bits (1166), Expect = e-127
 Identities = 235/427 (55%), Positives = 314/427 (73%), Gaps = 8/427 (1%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL--------LQDAVDFSLADAINTEFKN 465
            S +R  Y SS   +    +   RL    PG RL        L   VDFSLA A+N  FK 
Sbjct: 8    SAARRSYVSSGEMMVGGLAPGRRLG---PGTRLSLARMPPPLPTRVDFSLAGALNAGFKE 64

Query: 466  TRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELR 645
            TR +E+ E+ ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  ++L D+Y+ E+RELR
Sbjct: 65   TRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELR 124

Query: 646  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARL 825
             ++DQLT + AR+EVERDNLA+D+  +R+KLQ+ET  R EAE+ L ++RQ+ D A+LARL
Sbjct: 125  LRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARL 184

Query: 826  DLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYES 1005
            DLERK+ESL+EEI FL+K+H+                 ++DV+KPDLTAAL+++R QYE+
Sbjct: 185  DLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEA 244

Query: 1006 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNE 1185
            +A+ N+ EAEEWY+SKFADL++AA RN + LRQAK E+N+YRRQ+QSLTC++++L+GTNE
Sbjct: 245  MASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNE 304

Query: 1186 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 1365
            SLERQMRE EE    EAA+YQ+ + RL++E Q++K+EMARHL+EYQDLLNVK+ALDIEIA
Sbjct: 305  SLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIA 364

Query: 1366 TYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINET 1545
            TYRKLLEGEE+RI            RET+L++  + + H KR +++KTVE RDG+VI E+
Sbjct: 365  TYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIVVKTVEMRDGEVIKES 424

Query: 1546 SQHHDDL 1566
             Q H D+
Sbjct: 425  KQEHKDV 431


>ref|NP_006253.2| peripherin [Homo sapiens].
          Length = 470

 Score =  450 bits (1158), Expect = e-126
 Identities = 246/428 (57%), Positives = 320/428 (74%), Gaps = 9/428 (2%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRL---RSSVPG----VRLLQDAVDFSLADAINT 453
            S+ R S+SR L ++SP       SS+VRL   RS   G    +RL  + +DFS+A+A+N 
Sbjct: 36   SSSRFSSSRLLGSASP-------SSSVRLGSFRSPRAGAGALLRLPSERLDFSMAEALNQ 88

Query: 454  EFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEM 633
            EF  TR+NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+
Sbjct: 89   EFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQEL 148

Query: 634  RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNAS 813
            RELRR+++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+
Sbjct: 149  RELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDAT 208

Query: 814  LARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDV 987
            L+RL+LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+
Sbjct: 209  LSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDI 268

Query: 988  RQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDA 1167
            R QYES+AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSLTCEVD 
Sbjct: 269  RAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDG 328

Query: 1168 LKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMA 1347
            L+GTNE+L RQ+RE+EE FA+EA  YQ    RL++E++ +KEEMARHLREYQ+LLNVKMA
Sbjct: 329  LRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMA 388

Query: 1348 LDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDG 1527
            LDIEIATYRKLLEGEESRI            + T  E  P  D+HS++T+LIKT+ETR+G
Sbjct: 389  LDIEIATYRKLLEGEESRISVPVHSFASLNIKTTVPEVEPPQDSHSRKTVLIKTIETRNG 448

Query: 1528 QVINETSQ 1551
            +V+ E+ +
Sbjct: 449  EVVTESQK 456


>ref|NP_001229305.1| glial fibrillary acidic protein isoform 3 [Homo sapiens].
          Length = 438

 Score =  415 bits (1067), Expect = e-116
 Identities = 215/373 (57%), Positives = 283/373 (75%), Gaps = 8/373 (2%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL--------LQDAVDFSLADAINTEFKN 465
            S +R  Y SS   +    +   RL    PG RL        L   VDFSLA A+N  FK 
Sbjct: 8    SAARRSYVSSGEMMVGGLAPGRRLG---PGTRLSLARMPPPLPTRVDFSLAGALNAGFKE 64

Query: 466  TRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELR 645
            TR +E+ E+ ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  ++L D+Y+ E+RELR
Sbjct: 65   TRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELR 124

Query: 646  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARL 825
             ++DQLT + AR+EVERDNLA+D+  +R+KLQ+ET  R EAE+ L ++RQ+ D A+LARL
Sbjct: 125  LRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARL 184

Query: 826  DLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYES 1005
            DLERK+ESL+EEI FL+K+H+                 ++DV+KPDLTAAL+++R QYE+
Sbjct: 185  DLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEA 244

Query: 1006 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNE 1185
            +A+ N+ EAEEWY+SKFADL++AA RN + LRQAK E+N+YRRQ+QSLTC++++L+GTNE
Sbjct: 245  MASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNE 304

Query: 1186 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 1365
            SLERQMRE EE    EAA+YQ+ + RL++E Q++K+EMARHL+EYQDLLNVK+ALDIEIA
Sbjct: 305  SLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIA 364

Query: 1366 TYRKLLEGEESRI 1404
            TYRKLLEGEE+RI
Sbjct: 365  TYRKLLEGEENRI 377


>ref|NP_001124491.1| glial fibrillary acidic protein isoform 2 [Homo sapiens].
          Length = 431

 Score =  415 bits (1067), Expect = e-116
 Identities = 215/373 (57%), Positives = 283/373 (75%), Gaps = 8/373 (2%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL--------LQDAVDFSLADAINTEFKN 465
            S +R  Y SS   +    +   RL    PG RL        L   VDFSLA A+N  FK 
Sbjct: 8    SAARRSYVSSGEMMVGGLAPGRRLG---PGTRLSLARMPPPLPTRVDFSLAGALNAGFKE 64

Query: 466  TRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELR 645
            TR +E+ E+ ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  ++L D+Y+ E+RELR
Sbjct: 65   TRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEPTKLADVYQAELRELR 124

Query: 646  RQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARL 825
             ++DQLT + AR+EVERDNLA+D+  +R+KLQ+ET  R EAE+ L ++RQ+ D A+LARL
Sbjct: 125  LRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNLAAYRQEADEATLARL 184

Query: 826  DLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYES 1005
            DLERK+ESL+EEI FL+K+H+                 ++DV+KPDLTAAL+++R QYE+
Sbjct: 185  DLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEA 244

Query: 1006 VAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNE 1185
            +A+ N+ EAEEWY+SKFADL++AA RN + LRQAK E+N+YRRQ+QSLTC++++L+GTNE
Sbjct: 245  MASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNE 304

Query: 1186 SLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 1365
            SLERQMRE EE    EAA+YQ+ + RL++E Q++K+EMARHL+EYQDLLNVK+ALDIEIA
Sbjct: 305  SLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEYQDLLNVKLALDIEIA 364

Query: 1366 TYRKLLEGEESRI 1404
            TYRKLLEGEE+RI
Sbjct: 365  TYRKLLEGEENRI 377


>ref|NP_116116.1| alpha-internexin [Homo sapiens].
          Length = 499

 Score =  347 bits (889), Expect = 3e-95
 Identities = 180/334 (53%), Positives = 251/334 (75%), Gaps = 5/334 (1%)
 Frame = +1

Query: 415  DAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ 594
            D +D S A A   E+K  RTNEK +LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +
Sbjct: 73   DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132

Query: 595  GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEA 768
                SR+G+L++ E+R+LR Q+++ ++ +++  +ERD LAE++ RLR + +EE+  RE A
Sbjct: 133  HAEPSRVGELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGREGA 192

Query: 769  ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX--- 939
            E  L++ ++DVD A+LARLDLE+KVESL +E+AF++++HD                    
Sbjct: 193  ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252

Query: 940  DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQES 1119
            D+ V+KPDLT+ALR++R QYES+AAKNLQ AEEWYKSKFA+L+E A R+ +A+R +++E 
Sbjct: 253  DVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEI 312

Query: 1120 NEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEM 1299
            +EYRRQ+Q+ T E++ L+G NESLERQ+ E+EE  + E A YQD+IG+L+++++N K EM
Sbjct: 313  HEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKSEM 372

Query: 1300 ARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 1401
            ARHLREYQDLLNVKMALDIEIA YRKLLEGEE+R
Sbjct: 373  ARHLREYQDLLNVKMALDIEIAAYRKLLEGEETR 406


>ref|NP_006149.2| neurofilament light polypeptide [Homo sapiens].
          Length = 543

 Score =  327 bits (838), Expect = 2e-89
 Identities = 173/367 (47%), Positives = 251/367 (68%), Gaps = 2/367 (0%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVE 489
            ST+RS Y+S    V ++ S      SS   +    + +D S   AI+ + K+ RT EK +
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 490  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 663
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 664  TNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKV 843
            TN+K  ++ ER+ L E +  L+ + +EE L RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 844  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNL 1023
            +SL +EI+FLKK+H+                 +MDV+KPDL+AAL+D+R QYE +AAKN+
Sbjct: 214  DSLMDEISFLKKVHEEEIAELQAQIQYAQISVEMDVTKPDLSAALKDIRAQYEKLAAKNM 273

Query: 1024 QEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQM 1203
            Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q+
Sbjct: 274  QNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQL 333

Query: 1204 REMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 1383
            +E+E+    + +  QDTI +L++E++  K EMAR+L+EYQDLLNVKMALDIEIA YRKLL
Sbjct: 334  QELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKLL 393

Query: 1384 EGEESRI 1404
            EGEE+R+
Sbjct: 394  EGEETRL 400


>ref|NP_005373.2| neurofilament medium polypeptide isoform 1 [Homo sapiens].
          Length = 916

 Score =  313 bits (803), Expect = 3e-85
 Identities = 168/383 (43%), Positives = 261/383 (68%), Gaps = 13/383 (3%)
 Frame = +1

Query: 292  GSALRPSTSRSLYTSSPGGV---YATRSSAVRLRSSVPGVRLLQDAVDFSLADAI----- 447
            GS      S+S    SP  V   Y     A RL  S   +   + ++DFS + ++     
Sbjct: 29   GSPSSGFRSQSWSRGSPSTVSSSYKRSMLAPRLAYSSAMLSSAESSLDFSQSSSLLNGGS 88

Query: 448  --NTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGD 615
                ++K +R+NEK +LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD
Sbjct: 89   GPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGD 148

Query: 616  LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQ 795
             Y++E+RELR  ++ + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+
Sbjct: 149  AYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRK 208

Query: 796  DVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTA 972
            D++ ASL +++L++KV+SLQ+E+AFL+  H+                 +  D  K D++ 
Sbjct: 209  DIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDIST 268

Query: 973  ALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLT 1152
            AL+++R Q ES + +N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS +
Sbjct: 269  ALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKS 328

Query: 1153 CEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 1332
             E+++++GT ESLERQ+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLL
Sbjct: 329  IELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLL 388

Query: 1333 NVKMALDIEIATYRKLLEGEESR 1401
            NVKMALDIEIA YRKLLEGEE+R
Sbjct: 389  NVKMALDIEIAAYRKLLEGEETR 411


>ref|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].
          Length = 1020

 Score =  269 bits (688), Expect = 6e-72
 Identities = 158/387 (40%), Positives = 227/387 (58%), Gaps = 22/387 (5%)
 Frame = +1

Query: 466  TRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRE 639
            T  +EK +LQ LNDRFA YIDKVR LE  N+ L  E   L+ Q  G+S +G+LYE E+RE
Sbjct: 93   TSRSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRSAMGELYEREVRE 152

Query: 640  LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLA 819
            +R  V +L   + ++ +E+++L EDI  +R++L +E  QREEAE+  ++  +    A  A
Sbjct: 153  MRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDDEARQREEAEAAARALARFAQEAEAA 212

Query: 820  RLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM------DVSKPDLTAALR 981
            R+DL++K ++LQEE  +L++ H                          D  K D+T+ALR
Sbjct: 213  RVDLQKKAQALQEECGYLRRHHQEEVGELLGQIQGSGAAQAQMQAETRDALKCDVTSALR 272

Query: 982  DVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEV 1161
            ++R Q E  A ++  ++EEW++ +   LSEAA  N DA+R A++E  EYRRQ+Q+ T E+
Sbjct: 273  EIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTEL 332

Query: 1162 DALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 1341
            +ALK T +SLERQ  E+E+    + A+YQ+ I +L  E++N K EMA  LREYQDLLNVK
Sbjct: 333  EALKSTKDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVK 392

Query: 1342 MALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH------------- 1482
            MALDIEIA YRKLLEGEE RI                L  +P V TH             
Sbjct: 393  MALDIEIAAYRKLLEGEECRIGFGPIPFSL----PEGLPKIPSVSTHIKVKSEEKIKVVE 448

Query: 1483 -SKRTLLIKTVETRDGQVINETSQHHD 1560
             S++  +I   +T + QV  E ++  +
Sbjct: 449  KSEKETVIVEEQTEETQVTEEVTEEEE 475


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,153,460
Number of extensions: 1416581
Number of successful extensions: 7780
Number of sequences better than 1.0e-05: 157
Number of HSP's gapped: 6978
Number of HSP's successfully gapped: 167
Length of query: 640
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,704,088
Effective search space: 7807870728
Effective search space used: 7807870728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001190
         (1922 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035831.2| vimentin [Mus musculus].                             745   0.0  
Alignment   gi|NP_034173.1| desmin [Mus musculus].                               489   e-138
Alignment   gi|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus ...   451   e-127
Alignment   gi|NP_001157061.1| peripherin isoform 3 [Mus musculus].              448   e-126
Alignment   gi|NP_001157060.1| peripherin isoform 2 [Mus musculus].              436   e-122
Alignment   gi|NP_038667.2| peripherin isoform 1 [Mus musculus].                 431   e-121
Alignment   gi|NP_001124492.1| glial fibrillary acidic protein isoform 1 [M...   414   e-115
Alignment   gi|NP_666212.3| alpha-internexin [Mus musculus].                     350   2e-96
Alignment   gi|NP_035040.1| neurofilament light polypeptide [Mus musculus].      325   8e-89
Alignment   gi|NP_032717.2| neurofilament medium polypeptide [Mus musculus].     311   1e-84

>ref|NP_035831.2| vimentin [Mus musculus].
          Length = 466

 Score =  745 bits (1923), Expect = 0.0
 Identities = 396/453 (87%), Positives = 400/453 (88%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGG G                    LGSALRPSTSRSLY+SSPGG Y TRSSAVRLRSS
Sbjct: 14   MFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQD+VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               D+DVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFA+EAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNLESLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETNLESLPL 433

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|NP_034173.1| desmin [Mus musculus].
          Length = 469

 Score =  489 bits (1258), Expect = e-138
 Identities = 257/409 (62%), Positives = 318/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 343  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANY 522
            GG+ + RSS  RL ++        + +DFSLADA+N EF  TRTNEKVELQELNDRFANY
Sbjct: 64   GGLGSLRSS--RLGTTRAPSYGAGELLDFSLADAVNQEFLATRTNEKVELQELNDRFANY 121

Query: 523  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 702
            I+KVRFLEQQN  L AE+ +LKG+  +R+ +LYEEEMRELRRQV+ LTN +ARV+VERDN
Sbjct: 122  IEKVRFLEQQNAALAAEVNRLKGREPTRVAELYEEEMRELRRQVEVLTNQRARVDVERDN 181

Query: 703  LAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 882
            L +D+ RL+ KLQEE   REEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 182  LIDDLQRLKAKLQEEIQLREEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 241

Query: 883  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1062
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 242  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 301

Query: 1063 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1242
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA  
Sbjct: 302  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEANG 361

Query: 1243 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXX 1422
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI      
Sbjct: 362  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 421

Query: 1423 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1566
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 422  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 469


>ref|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus musculus].
          Length = 430

 Score =  451 bits (1160), Expect = e-127
 Identities = 224/382 (58%), Positives = 299/382 (78%)
 Frame = +1

Query: 421  VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 600
            VDFSLA A+N  FK TR +E+ E+ ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  
Sbjct: 47   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 106

Query: 601  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTL 780
            ++L D+Y+ E+RELR ++DQLT + AR+EVERDN A+D+  LR+KLQ+ET  R EAE+ L
Sbjct: 107  TKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNL 166

Query: 781  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKP 960
             ++RQ+ D A+LAR+DLERKVESL+EEI FL+K+++                 +MDV+KP
Sbjct: 167  AAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKP 226

Query: 961  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 1140
            DLTAALR++R QYE+VA  N+QE EEWY+SKFADL++AA+RN + LRQAK E+N+YRRQ+
Sbjct: 227  DLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQL 286

Query: 1141 QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 1320
            Q+LTC++++L+GTNESLERQMRE EE  A E+A+YQ+ + RL++E Q++KEEMARHL+EY
Sbjct: 287  QALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEY 346

Query: 1321 QDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLL 1500
            QDLLNVK+ALDIEIATYRKLLEGEE+RI            RET+L++  + + H KR ++
Sbjct: 347  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETSLDTKSVSEGHLKRNIV 406

Query: 1501 IKTVETRDGQVINETSQHHDDL 1566
            +KTVE RDG+VI ++ Q H D+
Sbjct: 407  VKTVEMRDGEVIKDSKQEHKDV 428


>ref|NP_001157061.1| peripherin isoform 3 [Mus musculus].
          Length = 475

 Score =  448 bits (1152), Expect = e-126
 Identities = 245/433 (56%), Positives = 317/433 (73%), Gaps = 8/433 (1%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRLRS----SVPGVRLLQDAVDFSLADAINTEFK 462
            S+ R S+SR L + SP       SS+ RL S        +RL  + +DFS+A+A+N EF 
Sbjct: 43   SSSRFSSSRLLGSGSP-------SSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFL 95

Query: 463  NTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMREL 642
             TR+NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+REL
Sbjct: 96   ATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELREL 155

Query: 643  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLAR 822
            RR+++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+R
Sbjct: 156  RRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSR 215

Query: 823  LDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQ 996
            L+LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R Q
Sbjct: 216  LELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQ 275

Query: 997  YESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKG 1176
            YE++AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSL CEVD L+G
Sbjct: 276  YENIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGLRG 335

Query: 1177 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDI 1356
            TNE+L RQ+RE+EE FA+EA  YQ    RL++E++ +KEEMARHLREYQ+LLNVKMALDI
Sbjct: 336  TNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDI 395

Query: 1357 EIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVI 1536
            EIATYRKLLEGEESRI            + T  E  PL D+HSK+ +LI+T+ETRDG+ +
Sbjct: 396  EIATYRKLLEGEESRISVPVHSFASLSLKTTVPEMEPLQDSHSKKMVLIRTIETRDGEKV 455

Query: 1537 NETSQ--HHDDLE 1569
               SQ   H DL+
Sbjct: 456  VTESQKEQHSDLD 468


>ref|NP_001157060.1| peripherin isoform 2 [Mus musculus].
          Length = 506

 Score =  436 bits (1120), Expect = e-122
 Identities = 245/464 (52%), Positives = 319/464 (68%), Gaps = 39/464 (8%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRLRS----SVPGVRLLQDAVDFSLADAINTEFK 462
            S+ R S+SR L + SP       SS+ RL S        +RL  + +DFS+A+A+N EF 
Sbjct: 43   SSSRFSSSRLLGSGSP-------SSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFL 95

Query: 463  NTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMREL 642
             TR+NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+REL
Sbjct: 96   ATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELREL 155

Query: 643  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLAR 822
            RR+++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+R
Sbjct: 156  RRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSR 215

Query: 823  LDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQ 996
            L+LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R Q
Sbjct: 216  LELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQ 275

Query: 997  YESVAAKNLQEAEEWYKSK--------------------------------FADLSEAAN 1080
            YE++AAKNLQEAEEWYKSK                                +ADLS+AAN
Sbjct: 276  YENIAAKNLQEAEEWYKSKVREHWGNPGGPRVGRHWEWRCASQPGLSATAQYADLSDAAN 335

Query: 1081 RNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIG 1260
            RN++ALRQAKQE NE RRQ+QSL CEVD L+GTNE+L RQ+RE+EE FA+EA  YQ    
Sbjct: 336  RNHEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAA 395

Query: 1261 RLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXX 1440
            RL++E++ +KEEMARHLREYQ+LLNVKMALDIEIATYRKLLEGEESRI            
Sbjct: 396  RLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSL 455

Query: 1441 RETNLESLPLVDTHSKRTLLIKTVETRDGQVINET-SQHHDDLE 1569
            + T  E  PL D+HSK+ +LI+T+ETRDG+V+ E+  + H DL+
Sbjct: 456  KTTVPEMEPLQDSHSKKMVLIRTIETRDGEVVTESQKEQHSDLD 499


>ref|NP_038667.2| peripherin isoform 1 [Mus musculus].
          Length = 507

 Score =  431 bits (1109), Expect = e-121
 Identities = 245/465 (52%), Positives = 317/465 (68%), Gaps = 40/465 (8%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRLRS----SVPGVRLLQDAVDFSLADAINTEFK 462
            S+ R S+SR L + SP       SS+ RL S        +RL  + +DFS+A+A+N EF 
Sbjct: 43   SSSRFSSSRLLGSGSP-------SSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFL 95

Query: 463  NTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMREL 642
             TR+NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+REL
Sbjct: 96   ATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELREL 155

Query: 643  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLAR 822
            RR+++ L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+R
Sbjct: 156  RRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSR 215

Query: 823  LDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQ 996
            L+LERK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R Q
Sbjct: 216  LELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQ 275

Query: 997  YESVAAKNLQEAEEWYKSK--------------------------------FADLSEAAN 1080
            YE++AAKNLQEAEEWYKSK                                +ADLS+AAN
Sbjct: 276  YENIAAKNLQEAEEWYKSKVREHWGNPGGPRVGRHWEWRCASQPGLSATAQYADLSDAAN 335

Query: 1081 RNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIG 1260
            RN++ALRQAKQE NE RRQ+QSL CEVD L+GTNE+L RQ+RE+EE FA+EA  YQ    
Sbjct: 336  RNHEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAA 395

Query: 1261 RLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXX 1440
            RL++E++ +KEEMARHLREYQ+LLNVKMALDIEIATYRKLLEGEESRI            
Sbjct: 396  RLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSL 455

Query: 1441 RETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQ--HHDDLE 1569
            + T  E  PL D+HSK+ +LI+T+ETRDG+ +   SQ   H DL+
Sbjct: 456  KTTVPEMEPLQDSHSKKMVLIRTIETRDGEKVVTESQKEQHSDLD 500


>ref|NP_001124492.1| glial fibrillary acidic protein isoform 1 [Mus musculus].
          Length = 428

 Score =  414 bits (1064), Expect = e-115
 Identities = 205/328 (62%), Positives = 268/328 (81%)
 Frame = +1

Query: 421  VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 600
            VDFSLA A+N  FK TR +E+ E+ ELNDRFA+YI+KVRFLEQQNK L AEL QL+ +  
Sbjct: 47   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 106

Query: 601  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTL 780
            ++L D+Y+ E+RELR ++DQLT + AR+EVERDN A+D+  LR+KLQ+ET  R EAE+ L
Sbjct: 107  TKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNL 166

Query: 781  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVSKP 960
             ++RQ+ D A+LAR+DLERKVESL+EEI FL+K+++                 +MDV+KP
Sbjct: 167  AAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKP 226

Query: 961  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 1140
            DLTAALR++R QYE+VA  N+QE EEWY+SKFADL++AA+RN + LRQAK E+N+YRRQ+
Sbjct: 227  DLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQL 286

Query: 1141 QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 1320
            Q+LTC++++L+GTNESLERQMRE EE  A E+A+YQ+ + RL++E Q++KEEMARHL+EY
Sbjct: 287  QALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEY 346

Query: 1321 QDLLNVKMALDIEIATYRKLLEGEESRI 1404
            QDLLNVK+ALDIEIATYRKLLEGEE+RI
Sbjct: 347  QDLLNVKLALDIEIATYRKLLEGEENRI 374


>ref|NP_666212.3| alpha-internexin [Mus musculus].
          Length = 501

 Score =  350 bits (898), Expect = 2e-96
 Identities = 196/376 (52%), Positives = 266/376 (70%), Gaps = 6/376 (1%)
 Frame = +1

Query: 292  GSALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRL-LQDAVDFSLADAINTEFKNT 468
            GS    S SRS   S+     A  SSA  L   +   RL   D +D S A A   E+K  
Sbjct: 36   GSFRSQSLSRSNVAST-----AACSSASSLGLGLAYRRLPASDGLDLSQAAARTNEYKII 90

Query: 469  RTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMREL 642
            RTNEK +LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +    SR+G+L++ E+REL
Sbjct: 91   RTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQRHAEPSRVGELFQRELREL 150

Query: 643  RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLAR 822
            R Q+++ ++ +A+  +ERD LAE++ RLR + +EE+  RE AE  L++ ++DVD A+LAR
Sbjct: 151  RAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGAERALKAQQRDVDGATLAR 210

Query: 823  LDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX---DMDVSKPDLTAALRDVRQ 993
            LDLE+KVESL +E+AF++++HD                    D+ V+KPDLT+ALR++R 
Sbjct: 211  LDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEVDVAVAKPDLTSALREIRA 270

Query: 994  QYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALK 1173
            QYES+AAKNLQ AEEWYKSKFA+L+E A R+ +A+R +++E +EYRRQ+Q+ T E++ L+
Sbjct: 271  QYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEIHEYRRQLQARTIEIEGLR 330

Query: 1174 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 1353
            G NESLERQ+ E+EE  + E A YQD+IG+L+ +++N K EMARHLREYQDLLNVKMALD
Sbjct: 331  GANESLERQILELEERHSAEVAGYQDSIGQLESDLRNTKSEMARHLREYQDLLNVKMALD 390

Query: 1354 IEIATYRKLLEGEESR 1401
            IEIA YRKLLEGEE+R
Sbjct: 391  IEIAAYRKLLEGEETR 406


>ref|NP_035040.1| neurofilament light polypeptide [Mus musculus].
          Length = 543

 Score =  325 bits (833), Expect = 8e-89
 Identities = 175/368 (47%), Positives = 252/368 (68%), Gaps = 3/368 (0%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVE 489
            ST+RS Y+S    V ++ S      SS   +    + +D S   AI+ + K+ RT EK +
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 490  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 663
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 664  TNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKV 843
            TN+K  ++ ER+ L E +  L+ + +EE L RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 844  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS-KPDLTAALRDVRQQYESVAAKN 1020
            +SL +EIAFLKK+H+                 +MDVS KPDL+AAL+D+R QYE +AAKN
Sbjct: 214  DSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKN 273

Query: 1021 LQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQ 1200
            +Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q
Sbjct: 274  MQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQ 333

Query: 1201 MREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 1380
            ++E+E+    + +  QDTI +L++E+++ K EMAR+L+EYQDLLNVKMALDIEIA YRKL
Sbjct: 334  LQELEDKQNADISAMQDTINKLENELRSTKSEMARYLKEYQDLLNVKMALDIEIAAYRKL 393

Query: 1381 LEGEESRI 1404
            LEGEE+R+
Sbjct: 394  LEGEETRL 401


>ref|NP_032717.2| neurofilament medium polypeptide [Mus musculus].
          Length = 848

 Score =  311 bits (797), Expect = 1e-84
 Identities = 165/381 (43%), Positives = 261/381 (68%), Gaps = 11/381 (2%)
 Frame = +1

Query: 292  GSALRPSTSRSLYTSSPGGV---YATRSSAVRLRSSVPGVRLLQDAVDFSLADAI----- 447
            GS      S+S    SP  V   Y   + A RL  S   +   + ++DFS + ++     
Sbjct: 29   GSPSSGFRSQSWSRGSPSTVSSSYKRSALAPRLAYSSAMLSSAESSLDFSQSSSLLNGGS 88

Query: 448  NTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLY 621
              ++K +R+NEK +LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y
Sbjct: 89   GGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAY 148

Query: 622  EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDV 801
            ++E+RELR  ++ + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D+
Sbjct: 149  DQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDI 208

Query: 802  DNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAAL 978
            + +S+ +++L++KV+SLQ+E+AFL+  H+                 +  D  K D++ AL
Sbjct: 209  EESSMVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISTAL 268

Query: 979  RDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCE 1158
            +++R Q E  + +N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E
Sbjct: 269  KEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIE 328

Query: 1159 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNV 1338
            +++++GT ESLERQ+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNV
Sbjct: 329  LESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNV 388

Query: 1339 KMALDIEIATYRKLLEGEESR 1401
            KMALDIEIA YRKLLEGEE+R
Sbjct: 389  KMALDIEIAAYRKLLEGEETR 409


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,217,228
Number of extensions: 1184251
Number of successful extensions: 6493
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 5700
Number of HSP's successfully gapped: 142
Length of query: 640
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 532
Effective length of database: 12,373,671
Effective search space: 6582792972
Effective search space used: 6582792972
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001190
         (1922 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].            759   0.0  
Alignment   gi|NP_001001535.1| desmin [Sus scrofa].                              491   e-139
Alignment   gi|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [...   459   e-129
Alignment   gi|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].          446   e-125
Alignment   gi|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].               446   e-125
Alignment   gi|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus sc...   347   1e-95
Alignment   gi|XP_003132861.1| PREDICTED: neurofilament light polypeptide-l...   325   7e-89
Alignment   gi|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-...   296   2e-80
Alignment   gi|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [...   265   9e-71
Alignment   gi|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-...   225   8e-59

>ref|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].
          Length = 466

 Score =  759 bits (1959), Expect = 0.0
 Identities = 404/453 (89%), Positives = 404/453 (89%)
 Frame = +1

Query: 211  MFGGPGXXXXXXXXXXXXXXXXXXXXLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 390
            MFGGPG                    LGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS
Sbjct: 14   MFGGPGTASRPSSSRSYVTTSTRTYSLGSALRPSTSRSLYTSSPGGVYATRSSAVRLRSS 73

Query: 391  VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 570
            VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA
Sbjct: 74   VPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLA 133

Query: 571  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 750
            ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET
Sbjct: 134  ELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEET 193

Query: 751  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXX 930
            LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHD              
Sbjct: 194  LQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQH 253

Query: 931  XXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 1110
               DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK
Sbjct: 254  VQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK 313

Query: 1111 QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 1290
            QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK
Sbjct: 314  QESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMK 373

Query: 1291 EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPL 1470
            EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRI            RETNLESLPL
Sbjct: 374  EEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLESLPL 433

Query: 1471 VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 1569
            VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE
Sbjct: 434  VDTHSKRTLLIKTVETRDGQVINETSQHHDDLE 466


>ref|NP_001001535.1| desmin [Sus scrofa].
          Length = 471

 Score =  491 bits (1265), Expect = e-139
 Identities = 256/409 (62%), Positives = 319/409 (77%), Gaps = 1/409 (0%)
 Frame = +1

Query: 343  GGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANY 522
            G + A+R  A R+ SS  G   L   +DFSLADA+N EF  TRTNEKVELQELNDRFANY
Sbjct: 67   GPLRASRLGATRVPSSSYGAGEL---LDFSLADAVNQEFLTTRTNEKVELQELNDRFANY 123

Query: 523  IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDN 702
            I+KVRFLEQQN  L AE+ +LKG+  +R+ ++YEEE+RELRRQV+ LTN +ARV+VERDN
Sbjct: 124  IEKVRFLEQQNAALAAEVNRLKGREPTRVAEIYEEELRELRRQVEVLTNQRARVDVERDN 183

Query: 703  LAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 882
            L +D+ RL+ KLQEE   +EEAE+ L +FR DVD A+LAR+DLER++ESL EEIAFLKK+
Sbjct: 184  LLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKV 243

Query: 883  HDXXXXXXXXXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFAD 1062
            H+                 +MD+SKPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +D
Sbjct: 244  HEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSD 303

Query: 1063 LSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAAN 1242
            L++AAN+NNDALRQAKQE  EYR Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ 
Sbjct: 304  LTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASG 363

Query: 1243 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXX 1422
            YQD I RL++EI+++K+EMARHLREYQDLLNVKMALD+EIATYRKLLEGEESRI      
Sbjct: 364  YQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQT 423

Query: 1423 XXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINE-TSQHHDDL 1566
                  RET+ E     + H+K+T++IKT+ETRDG+V++E T Q H+ L
Sbjct: 424  FSALNFRETSPEQRG-SEVHTKKTVMIKTIETRDGEVVSEATQQQHEVL 471


>ref|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [Sus scrofa].
          Length = 428

 Score =  459 bits (1181), Expect = e-129
 Identities = 235/399 (58%), Positives = 306/399 (76%), Gaps = 8/399 (2%)
 Frame = +1

Query: 394  PGVRL--------LQDAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQ 549
            PG RL        L   VDFSLA A+NT FK TR +E+ E+ ELNDRFA+YI+KVRFLEQ
Sbjct: 29   PGPRLSLARMPPPLPARVDFSLAGALNTGFKETRASERAEMMELNDRFASYIEKVRFLEQ 88

Query: 550  QNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 729
            QNK L AEL QL+ +  ++L D+Y+ E+RELR ++DQLT + AR+EVERDNLA+D+  LR
Sbjct: 89   QNKALAAELNQLRAKEPTKLADVYQAELRELRLRLDQLTANGARLEVERDNLAQDLGTLR 148

Query: 730  EKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXX 909
            +KLQ+ET  R EAE+ L ++RQ+ D A+LARLDLERK+ESL+EEI FL+K+HD       
Sbjct: 149  QKLQDETNLRLEAENNLATYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVRELQ 208

Query: 910  XXXXXXXXXXDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNN 1089
                      +MDV+KPDLTAALR++R QYE+VA  N+QEAEEWY+SKFADL++AA RN 
Sbjct: 209  EQLAQQQVHVEMDVTKPDLTAALREIRTQYEAVATSNMQEAEEWYRSKFADLTDAAARNA 268

Query: 1090 DALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQ 1269
            + LRQAK E+N+YRRQ+Q+LTC+V++L+GTNESLERQMRE EE  A EAA+YQ+ + RL+
Sbjct: 269  ELLRQAKHEANDYRRQLQALTCDVESLRGTNESLERQMREQEERHAREAASYQEALTRLE 328

Query: 1270 DEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIXXXXXXXXXXXXRET 1449
            +E Q++K+EMARHL+EYQ+LLNVK+ALDIEIATYRKLLEGEE+RI            RET
Sbjct: 329  EEGQSLKDEMARHLQEYQELLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRET 388

Query: 1450 NLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDL 1566
            +L++  + + H KR +++KTVE RDG+VI E+ Q H D+
Sbjct: 389  SLDTKSVSEGHLKRNIVVKTVEMRDGEVIKESKQEHKDV 427


>ref|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].
          Length = 469

 Score =  446 bits (1148), Expect = e-125
 Identities = 238/421 (56%), Positives = 312/421 (74%), Gaps = 2/421 (0%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRT 474
            S+ R S+SR L ++SPG      S       +   +RL  + +DFS+A+A+N EF  TR+
Sbjct: 35   SSSRFSSSRLLGSASPGSSVRLGSFRGPRAGAGSLLRLPSERLDFSMAEALNQEFLATRS 94

Query: 475  NEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQV 654
            NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+RELRR++
Sbjct: 95   NEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRREL 154

Query: 655  DQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLE 834
            + L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+RL+LE
Sbjct: 155  ELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELE 214

Query: 835  RKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQYESV 1008
            RK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R QYES+
Sbjct: 215  RKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEVEATVKPELTAALRDIRAQYESI 274

Query: 1009 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNES 1188
            AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSLTCEVD L+GTNE+
Sbjct: 275  AAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEA 334

Query: 1189 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 1368
            L RQ+RE+EE FA+EA  YQ    +L++E++ +KEEMARHLREYQ+LLNVKMALDIEIAT
Sbjct: 335  LLRQLRELEEQFALEAGGYQAGAAKLEEELRQLKEEMARHLREYQELLNVKMALDIEIAT 394

Query: 1369 YRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETS 1548
            YRKLLEGEESRI            + T  E  P  + HS++ +LIKT+ETRDG+V+ E+ 
Sbjct: 395  YRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQ 454

Query: 1549 Q 1551
            +
Sbjct: 455  K 455


>ref|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].
          Length = 469

 Score =  446 bits (1148), Expect = e-125
 Identities = 238/421 (56%), Positives = 312/421 (74%), Gaps = 2/421 (0%)
 Frame = +1

Query: 295  SALRPSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRT 474
            S+ R S+SR L ++SPG      S       +   +RL  + +DFS+A+A+N EF  TR+
Sbjct: 35   SSSRFSSSRLLGSASPGSSVRLGSFRGPRAGAGSLLRLPSERLDFSMAEALNQEFLATRS 94

Query: 475  NEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQV 654
            NEK ELQELNDRFAN+I+KVRFLEQQN  L  EL Q +GQ  +R   L ++E+RELRR++
Sbjct: 95   NEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRREL 154

Query: 655  DQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLE 834
            + L  ++ RV+VERD LAED+  L+++L+EET +RE+AE  L  FR+DVD+A+L+RL+LE
Sbjct: 155  ELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELE 214

Query: 835  RKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX-DMDVS-KPDLTAALRDVRQQYESV 1008
            RK+ESL +EI FLKKLH+                  +++ + KP+LTAALRD+R QYES+
Sbjct: 215  RKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEVEATVKPELTAALRDIRAQYESI 274

Query: 1009 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNES 1188
            AAKNLQEAEEWYKSK+ADLS+AANRN++ALRQAKQE NE RRQ+QSLTCEVD L+GTNE+
Sbjct: 275  AAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEA 334

Query: 1189 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIAT 1368
            L RQ+RE+EE FA+EA  YQ    +L++E++ +KEEMARHLREYQ+LLNVKMALDIEIAT
Sbjct: 335  LLRQLRELEEQFALEAGGYQAGAAKLEEELRQLKEEMARHLREYQELLNVKMALDIEIAT 394

Query: 1369 YRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETS 1548
            YRKLLEGEESRI            + T  E  P  + HS++ +LIKT+ETRDG+V+ E+ 
Sbjct: 395  YRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQ 454

Query: 1549 Q 1551
            +
Sbjct: 455  K 455


>ref|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus scrofa].
          Length = 477

 Score =  347 bits (890), Expect = 1e-95
 Identities = 181/334 (54%), Positives = 251/334 (75%), Gaps = 5/334 (1%)
 Frame = +1

Query: 415  DAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ 594
            D +D S A A   E+K  RTNEK +LQ LNDRFA +I+KV  LE QN+ L AEL  L+ +
Sbjct: 73   DGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALRQR 132

Query: 595  GK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEA 768
                SR+G+L++ E+RELR Q+++ ++ +A+  +ERD LAE++ RLR + +EE+  RE A
Sbjct: 133  HAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGREGA 192

Query: 769  ESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXX--- 939
            E  L++ ++DVD A+LARLDLE+KVESL +E+AF++++HD                    
Sbjct: 193  ERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAAEV 252

Query: 940  DMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQES 1119
            D+ V+KPDL++ALR++R QYES+AAKNLQ AEEWYKSKFA+L+E A R+ +A+R +++E 
Sbjct: 253  DVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASREEI 312

Query: 1120 NEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEM 1299
            +EYRRQ+Q+ T E++ L+G NESLERQ+ E+EE  + E A+YQD IG+L+++++N K EM
Sbjct: 313  HEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKSEM 372

Query: 1300 ARHLREYQDLLNVKMALDIEIATYRKLLEGEESR 1401
            ARHLREYQDLLNVKMALDIEIA YRKLLEGEE+R
Sbjct: 373  ARHLREYQDLLNVKMALDIEIAAYRKLLEGEETR 406


>ref|XP_003132861.1| PREDICTED: neurofilament light polypeptide-like isoform 2 [Sus
            scrofa].
          Length = 544

 Score =  325 bits (832), Expect = 7e-89
 Identities = 175/368 (47%), Positives = 251/368 (68%), Gaps = 3/368 (0%)
 Frame = +1

Query: 310  STSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKVE 489
            ST+RS Y+S    V ++ S      SS   +    + +D S   AI+ + K+ RT EK +
Sbjct: 34   STARSAYSSYSAPVSSSLSVRRSYSSSSGSLMPSLENLDLSQVAAISNDLKSIRTQEKAQ 93

Query: 490  LQELNDRFANYIDKVRFLEQQNKILLAELEQL--KGQGKSRLGDLYEEEMRELRRQVDQL 663
            LQ+LNDRFA++I++V  LEQQNK+L AEL  L  K    SR   LYE+E+R+LR   +  
Sbjct: 94   LQDLNDRFASFIERVHELEQQNKVLEAELLVLRQKHSEPSRFRALYEQEIRDLRLAAEDA 153

Query: 664  TNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERKV 843
            TN+K  ++ ER+ L E +  L+ + +EE L RE+AE  L   R+  D A+LAR +LE+++
Sbjct: 154  TNEKQALQGEREGLEETLRNLQARYEEEVLSREDAEGRLMEARKGADEAALARAELEKRI 213

Query: 844  ESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS-KPDLTAALRDVRQQYESVAAKN 1020
            +SL +EIAFLKK+H+                 +MDVS KPDL+AAL+D+R QYE +AAKN
Sbjct: 214  DSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMDVSSKPDLSAALKDIRAQYEKLAAKN 273

Query: 1021 LQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQ 1200
            +Q AEEW+KS+F  L+E+A +N DA+R AK E +E RR +++ T E++A +G NE+LE+Q
Sbjct: 274  MQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSESRRLLKAKTLEIEACRGMNEALEKQ 333

Query: 1201 MREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 1380
            ++E+E+    + +  QDTI +L++E++  K EMAR+L+EYQDLLNVKMALDIEIA YRKL
Sbjct: 334  LQELEDKQNADISAMQDTINKLENELRTTKSEMARYLKEYQDLLNVKMALDIEIAAYRKL 393

Query: 1381 LEGEESRI 1404
            LEGEE+R+
Sbjct: 394  LEGEETRL 401


>ref|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-like isoform 1 [Sus
            scrofa].
          Length = 412

 Score =  296 bits (759), Expect = 2e-80
 Identities = 157/359 (43%), Positives = 247/359 (68%), Gaps = 3/359 (0%)
 Frame = +1

Query: 307  PSTSRSLYTSSPGGVYATRSSAVRLRSSVPGVRLLQDAVDFSLADAINTEFKNTRTNEKV 486
            PST  S Y  S      T SSA+ L S+   +   Q +   +       ++K +R+NEK 
Sbjct: 45   PSTVSSSYKRSALAPRLTYSSAM-LSSAESSLDFSQSSSLLNGGSGPGGDYKLSRSNEKE 103

Query: 487  ELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKS--RLGDLYEEEMRELRRQVDQ 660
            +LQ LNDRFA YI+KV +LEQQNK + AE++ L+ +  S  +LGD Y++E+RELR  ++ 
Sbjct: 104  QLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQALRQKQASHAQLGDAYDQEIRELRATLEL 163

Query: 661  LTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDLERK 840
            + ++KA+V+++ D+L EDI RL+E+ +EE   R++ E+ +++ R+D++ ASL +++L++K
Sbjct: 164  VNHEKAQVQLDSDHLEEDIHRLKERFEEEARLRDDTEAAIRALRKDIEEASLVKVELDKK 223

Query: 841  VESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM-DVSKPDLTAALRDVRQQYESVAAK 1017
            V+SLQ+E+AFL+  H+                 +  D  K D+++AL+++R Q E  + +
Sbjct: 224  VQSLQDEVAFLRSNHEEEVADLLAQIQASHITVERKDYLKTDISSALKEIRSQLECHSDQ 283

Query: 1018 NLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLER 1197
            N+ +AEEW+K ++A L+EAA +N +A+R AK+E  EYRRQ+QS + E+++++GT ESLER
Sbjct: 284  NMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEEIAEYRRQLQSKSIELESVRGTKESLER 343

Query: 1198 QMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYR 1374
            Q+ ++EE    + ++YQDTI +L++E++  K EMARHLREYQDLLNVKMALDIEIA YR
Sbjct: 344  QLSDIEERHNHDLSSYQDTIQQLENELRGTKWEMARHLREYQDLLNVKMALDIEIAAYR 402


>ref|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [Sus scrofa].
          Length = 1049

 Score =  265 bits (676), Expect = 9e-71
 Identities = 153/363 (42%), Positives = 219/363 (60%), Gaps = 10/363 (2%)
 Frame = +1

Query: 478  EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ--GKSRLGDLYEEEMRELRRQ 651
            EK +LQ LNDRFA YIDKVR LE  N+ L  E   L+ Q  G++ +G+LYE E+RE+R  
Sbjct: 92   EKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRAAMGELYEREVREMRGA 151

Query: 652  VDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQDVDNASLARLDL 831
            V +L   + ++ +E+++L EDI  +R++L +E  QREEAE+  ++  +    A  AR++L
Sbjct: 152  VLRLGAARGQLRLEQEHLLEDIAHVRQRLDDEARQREEAEAAARALARFAQEAEAARVEL 211

Query: 832  ERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDM------DVSKPDLTAALRDVRQ 993
            ++K ++LQEE  +L++ H                          D  K D+T+ALR++R 
Sbjct: 212  QKKAQALQEECGYLRRHHQEEVGELLGQIQGSSAAQTQAQAEARDALKCDVTSALREIRA 271

Query: 994  QYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALK 1173
            Q E  A ++  ++EEW++ +   LSEAA  N DA+R A++E  EYRRQ+Q+ T E++ALK
Sbjct: 272  QLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTTELEALK 331

Query: 1174 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 1353
             T +SLERQ  E+E+    + A+YQ+ I +L  E++N K EMA  LREYQDLLNVKMALD
Sbjct: 332  STKDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLNVKMALD 391

Query: 1354 IEIATYRKLLEGEESRIXXXXXXXXXXXXRETNLESLPLVDTH--SKRTLLIKTVETRDG 1527
            IEIA YRKLLEGEE RI                L  +P + TH   K    IK VE  + 
Sbjct: 392  IEIAAYRKLLEGEECRIGFGPSPFSL----PEGLPKIPSISTHIKVKSEEKIKVVEKSEK 447

Query: 1528 QVI 1536
            + +
Sbjct: 448  ETV 450


>ref|XP_003355441.1| PREDICTED: keratin, type II cytoskeletal 75-like [Sus scrofa].
          Length = 526

 Score =  225 bits (573), Expect = 8e-59
 Identities = 122/323 (37%), Positives = 197/323 (60%), Gaps = 3/323 (0%)
 Frame = +1

Query: 445  INTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSR--LGDL 618
            I+   +  R  E+ +++ LN++FA++IDKVRFLEQQNK+L  +   L+    +R  +  +
Sbjct: 132  IDPSLQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWSLLQEHKTTRANIEPM 191

Query: 619  YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAESTLQSFRQD 798
            +E  +  LRRQ+D L  +++R+EVE  ++ + +   + K +EE  +R  AE+     ++D
Sbjct: 192  FEAYISNLRRQLDSLGGERSRLEVELKSMQDVVEDFKNKYEEEINRRTVAENEFVVLKKD 251

Query: 799  VDNASLARLDLERKVESLQEEIAFLKKLHDXXXXXXXXXXXXXXXXXDMDVS-KPDLTAA 975
            VD A +++++LE KVE+L +EI FL+  +D                  MD + K DL + 
Sbjct: 252  VDAAYMSKVELEAKVEALMDEINFLRAFYDAELAQLQAQISETSVILSMDNNRKLDLDSI 311

Query: 976  LRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTC 1155
            + +V+ QYE +A ++  EAE WY+ K+ +L  +A R+ D LR  K E +E  R +Q L  
Sbjct: 312  ISEVKAQYEDIANRSRAEAESWYQIKYEELQRSAGRHGDDLRSTKMEISELNRVIQRLRS 371

Query: 1156 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 1335
            E+D LK    +L+  + + E+   +   + +  +  L+D +Q  K++MAR LREYQ+L+N
Sbjct: 372  EIDNLKKQCATLQSAIADAEQRGELALKDAKHKLAELEDALQKAKQDMARQLREYQELMN 431

Query: 1336 VKMALDIEIATYRKLLEGEESRI 1404
            VK+ALDIEIATYRKLLEGEE R+
Sbjct: 432  VKLALDIEIATYRKLLEGEECRL 454


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,747,715
Number of extensions: 934921
Number of successful extensions: 4598
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 4173
Number of HSP's successfully gapped: 118
Length of query: 640
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 535
Effective length of database: 8,729,747
Effective search space: 4670414645
Effective search space used: 4670414645
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001190
         (1922 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr10                                                        1459   0.0  
Sscrofa_Chr15                                                         147   3e-32
Sscrofa_Chr05                                                         117   2e-23
Sscrofa_Chr01                                                         107   2e-20
Sscrofa_Chr14                                                          96   9e-17
Sscrofa_Chr12                                                          76   8e-11

>Sscrofa_Chr10 
||          Length = 79102373

 Score = 1459 bits (736), Expect = 0.0
 Identities = 736/736 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        aaactgcgccctcggcggggtcccgtcctctgccactcttgctccggggtccccgcgcca 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48226978 aaactgcgccctcggcggggtcccgtcctctgccactcttgctccggggtccccgcgcca 48227037

                                                                            
Query: 61       gagacgcagcaacgctccctttgcccacacccaccgctccctcgctcgcctctcctcccg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227038 gagacgcagcaacgctccctttgcccacacccaccgctccctcgctcgcctctcctcccg 48227097

                                                                            
Query: 121      gagccagtccgcgccaccgcagccgcccagcccactgccacctctgcagccatgtccacc 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227098 gagccagtccgcgccaccgcagccgcccagcccactgccacctctgcagccatgtccacc 48227157

                                                                            
Query: 181      aggaccgtgtcctcgtcctcctaccgcagaatgttcggcggccctggcaccgctagccgg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227158 aggaccgtgtcctcgtcctcctaccgcagaatgttcggcggccctggcaccgctagccgg 48227217

                                                                            
Query: 241      ccgagctccagccggagctacgtgaccacgtccacccgtacctacagcctgggcagcgcg 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227218 ccgagctccagccggagctacgtgaccacgtccacccgtacctacagcctgggcagcgcg 48227277

                                                                            
Query: 301      ctgcgtcccagcaccagccgcagcctctacacctcgtccccgggcggcgtgtacgccacg 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227278 ctgcgtcccagcaccagccgcagcctctacacctcgtccccgggcggcgtgtacgccacg 48227337

                                                                            
Query: 361      cgctcctcggccgtgcgcctgcggagcagtgtgcccggcgtgcggctgctgcaggacgcg 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227338 cgctcctcggccgtgcgcctgcggagcagtgtgcccggcgtgcggctgctgcaggacgcg 48227397

                                                                            
Query: 421      gtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgag 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227398 gtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgag 48227457

                                                                            
Query: 481      aaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttc 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227458 aaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttc 48227517

                                                                            
Query: 541      ctggagcagcagaacaagattctgctagccgagctcgagcaactcaagggccagggcaag 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227518 ctggagcagcagaacaagattctgctagccgagctcgagcaactcaagggccagggcaag 48227577

                                                                            
Query: 601      tcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccag 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227578 tcgcgcctgggggacctctacgaggaggagatgcgagagctgcgccggcaggtggaccag 48227637

                                                                            
Query: 661      ctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaatctggccgaggacatcatg 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48227638 ctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaatctggccgaggacatcatg 48227697

                                
Query: 721      cggctgcgggagaagt 736
                ||||||||||||||||
Sbjct: 48227698 cggctgcgggagaagt 48227713



 Score =  611 bits (308), Expect = e-172
 Identities = 336/340 (98%), Gaps = 4/340 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1528     caggttatcaatgaaacttcccagcatcacgatgatctggaataagaactgcatgtactc 1587
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48235306 caggttatcaatgaaacttcccagcatcacgatgatctggaataagaactgcatgtactc 48235365

                                                                            
Query: 1588     tgtgcagcgaaatattaccagcaagaataaaaaagaaatccgtatcttcaagaaatagct 1647
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48235366 tgtgcagcgaaatattaccagcaagaataaaaaagaaatccgtatcttcaagaaatagct 48235425

                                                                            
Query: 1648     ttcaagtgcctttctgcagtttttcaggagcgcaagataggtttggaataggaataagct 1707
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48235426 ttcaagtgcctttctgcagtttttcaggagcgcaagataggtttggaataggaataagct 48235485

                                                                            
Query: 1708     ctagttcttaaaaaccaacactcgtaaaagatttaggaaaaaagtttacaacataatcta 1767
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48235486 ctagttcttaaaaaccaacactcgtaaaagatttaggaaaaaagtttacaacataatcta 48235545

                                                                            
Query: 1768     gtttaccgaagaagccttgtgctagaatacttttttaaaaagtatttttgaataccatt- 1826
                |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 48235546 gtttaccgaagaagccttgtgctagaatac-tttttaaaaagtatttttgaataccatta 48235604

                                                        
Query: 1827     aaactgctttttt-catcaaatatctgacacaacttgttt 1865
                ||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 48235605 aaactgcttttttccatcaaatatctgac-caacttgttt 48235643



 Score =  440 bits (222), Expect = e-120
 Identities = 222/222 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1180     aacgagtctctggaacgccagatgcgggaaatggaagagaactttgccgtggaagctgct 1239
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48232668 aacgagtctctggaacgccagatgcgggaaatggaagagaactttgccgtggaagctgct 48232727

                                                                            
Query: 1240     aactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatg 1299
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48232728 aactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagagatg 48232787

                                                                            
Query: 1300     gcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggctctcgacattgag 1359
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48232788 gcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggctctcgacattgag 48232847

                                                          
Query: 1360     attgccacctacaggaagctgctggaaggagaagagagcagg 1401
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48232848 attgccacctacaggaagctgctggaaggagaagagagcagg 48232889



 Score =  325 bits (164), Expect = 5e-86
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                            
Query: 890      aggaaatccaggagctgcaggctcagatccaggaacagcacgtccaaatcgatatggatg 949
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231204 aggaaatccaggagctgcaggctcagatccaggaacagcacgtccaaatcgatatggatg 48231263

                                                                            
Query: 950      tttccaagcctgacctcacggctgccctgcgtgatgtccgccagcagtatgagagcgtgg 1009
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231264 tttccaagcctgacctcacggctgccctgcgtgatgtccgccagcagtatgagagcgtgg 48231323

                                                            
Query: 1010     ccgccaagaaccttcaggaggcggaggagtggtacaagtccaag 1053
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231324 ccgccaagaaccttcaggaggcggaggagtggtacaagtccaag 48231367



 Score =  254 bits (128), Expect = 2e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1052     agtttgccgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagc 1111
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231898 agtttgccgacctctccgaggctgctaaccgcaacaacgatgccctgcgccaggccaagc 48231957

                                                                            
Query: 1112     aggagtcaaatgagtaccggagacaggtgcagtctctcacctgtgaagtggatgcgctca 1171
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231958 aggagtcaaatgagtaccggagacaggtgcagtctctcacctgtgaagtggatgcgctca 48232017

                        
Query: 1172     aggggacc 1179
                ||||||||
Sbjct: 48232018 aggggacc 48232025



 Score =  200 bits (101), Expect = 2e-48
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                            
Query: 792      acaggatgtcgacaatgcttctttggcacgtcttgacctggagcgcaaagtggaatcctt 851
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231018 acaggatgtcgacaatgcttctttggcacgtcttgacctggagcgcaaagtggaatcctt 48231077

                                                         
Query: 852      gcaagaagagattgcctttttgaagaaactgcacgatgagg 892
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 48231078 gcaagaagagattgcctttttgaagaaactgcacgatgagg 48231118



 Score =  176 bits (89), Expect = 3e-41
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1444     gaaaccaatctggaatccctccctctggttgacacccattccaaaaggacacttctgatt 1503
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48234086 gaaaccaatctggaatccctccctctggttgacacccattccaaaaggacacttctgatt 48234145

                                             
Query: 1504     aagacggttgagaccagagatggacaggt 1532
                |||||||||||||||||||||||||||||
Sbjct: 48234146 aagacggttgagaccagagatggacaggt 48234174



 Score =  123 bits (62), Expect = 4e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                            
Query: 735      gttgcaggaggagacgcttcagagggaggaagccgagagcactttgcagtctttcagaca 794
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48228336 gttgcaggaggagacgcttcagagggaggaagccgagagcactttgcagtctttcagaca 48228395

                  
Query: 795      gg 796
                ||
Sbjct: 48228396 gg 48228397



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                              
Query: 1399     aggatttctctgcctcttccaaatttttcttccctgaacctgaggg 1444
                ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48233348 aggatttctctgcctcttccaaatttttcttccctgaacctgaggg 48233393


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Plus

                                                                             
Query: 422       tggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgaga 481
                 |||||||||||||||| |||||| |||||   ||||||  || ||| |||||||||||||
Sbjct: 134560820 tggacttctcgctggcagacgccgtcaaccaggagttcctgaccacgcgcaccaacgaga 134560879

                                                                             
Query: 482       aggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcc 541
                 | |||||| |||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 134560880 aagtggagttgcaggagctcaatgatcgctttgccaactacatcgagaaggtgcgcttcc 134560939

                               
Query: 542       tggagcagcagaac 555
                 ||||||||||||||
Sbjct: 134560940 tggagcagcagaac 134560953



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                             
Query: 1288      aaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggct 1347
                 ||||| ||||||||||| ||||| || || ||||| |||||||| |||||||||||||| 
Sbjct: 134563367 aaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggcc 134563426

                                                                    
Query: 1348      ctcgacattgagattgccacctacaggaagctgctggaaggagaagagagc 1398
                 || ||  | ||||||||||||||| ||||||||||||| || || ||||||
Sbjct: 134563427 ctggatgtggagattgccacctaccggaagctgctggagggcgaggagagc 134563477


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  117 bits (59), Expect = 2e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                            
Query: 469      cgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgac 528
                |||| ||||||||||  ||||||||||||||| || |||||||||||||||| |||||| 
Sbjct: 15692052 cgcagcaacgagaagcaggagctgcaggagctcaacgaccgcttcgccaacttcatcgag 15692111

                                           
Query: 529      aaggtgcgcttcctggagcagcagaac 555
                |||||||||||||||||||||||||||
Sbjct: 15692112 aaggtgcgcttcctggagcagcagaac 15692138



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 92/111 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1288     aaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggct 1347
                ||||||||||||||  | ||||| || || ||||| || || || || ||||||||||| 
Sbjct: 15693991 aaggaagagatggcgagacacctgcgagagtaccaggagctcctcaacgtcaagatggcc 15694050

                                                                   
Query: 1348     ctcgacattgagattgccacctacaggaagctgctggaaggagaagagagc 1398
                || ||||| ||||| ||||||||| ||||||||||||| || || ||||||
Sbjct: 15694051 ctggacatcgagatcgccacctaccggaagctgctggagggcgaggagagc 15694101



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 76/90 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1312     cgtgaataccaagacctgctgaatgtcaagatggctctcgacattgagattgccacctac 1371
                ||||| ||||| || ||| ||||||||||| |||| || ||| | ||||| |||||||||
Sbjct: 18664280 cgtgagtaccaggaactgatgaatgtcaagctggccctggacgtggagatcgccacctac 18664221

                                              
Query: 1372     aggaagctgctggaaggagaagagagcagg 1401
                 | ||||||||||| ||||| |||||||||
Sbjct: 18664220 cgcaagctgctggagggagaggagagcagg 18664191



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                             
Query: 1357     gagattgccacctacaggaagctgctggaaggagaagagagcagg 1401
                |||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 18187015 gagattgccacctacaggaagctgctggaaggcgaggagtgcagg 18187059



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                             
Query: 1357     gagattgccacctacaggaagctgctggaaggagaagagagcagg 1401
                |||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 18204749 gagattgccacctacaggaagctgctggaaggcgaggagtgcagg 18204793



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 994      cagtatgagagcgtggccgccaagaaccttcaggaggcggaggagtggtacaagtccaag 1053
                ||||| |||||| | || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 15693510 cagtacgagagcattgcggcgaagaaccttcaggaggcagaagagtggtacaagtccaag 15693569


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  107 bits (54), Expect = 2e-20
 Identities = 106/123 (86%), Gaps = 4/123 (3%)
 Strand = Plus / Plus

                                                                            
Query: 1207     gaaatggaagagaactttgccgtggaagctgctaactaccaagacactattggccgcctg 1266
                |||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||||
Sbjct: 40283597 gaaatggaagagaactttgctgtggaagctgctaactaccatgacacaactggcctcctg 40283656

                                                                            
Query: 1267     caggatgagattcagaacatgaaggaagagatggcccgtcaccttcgtgaataccaagac 1326
                 || ||||||||||||||    ||||||| ||||||| |||||| || ||||| || |||
Sbjct: 40283657 tagaatgagattcagaac----aggaagaaatggcccatcacctccgagaatatcaggac 40283712

                   
Query: 1327     ctg 1329
                |||
Sbjct: 40283713 ctg 40283715



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 1715     ttaaaaaccaacactcgtaaaagatttaggaaaaaagtttacaacataatctagtttac 1773
                |||| ||||||||||| ||||  |||||| ||||||  |||||||||||||||||||||
Sbjct: 40284105 ttaagaaccaacactcttaaagaatttagaaaaaaaaattacaacataatctagtttac 40284163


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                            
Query: 467      cccgcaccaacgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcg 526
                ||||| |||||||||||| | ||||||||| |||||| |||||||||||   ||||||||
Sbjct: 10122266 cccgctccaacgagaaggagcagctgcaggggctgaacgaccgcttcgcgggctacatcg 10122207

                                                
Query: 527      acaaggtgcgcttcctggagcagcagaacaag 558
                | ||||||| || |||||||||||||||||||
Sbjct: 10122206 agaaggtgcactacctggagcagcagaacaag 10122175



 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                             
Query: 1294      gagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggctctcgac 1353
                 |||||||| || ||||||||||||||||| ||| |||| |||||||| |||||||| |||
Sbjct: 124177721 gagatggcacgccaccttcgtgaataccaggacttgcttaatgtcaaaatggctcttgac 124177780

                         
Query: 1354      attgagat 1361
                 ||||||||
Sbjct: 124177781 attgagat 124177788



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 477      cgagaaggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcg 536
                |||||||| | ||||||||| |||||| |||||||||||   ||||||||||||||||||
Sbjct: 49575365 cgagaaggagcagctgcaggcgctgaacgaccgcttcgcgggctacatcgacaaggtgcg 49575424



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                  
Query: 1315     gaataccaagacctgctgaatgtcaagatggctctcgacattgagattgc 1364
                |||||||||||||| || ||||| ||||||||| | ||||||||||||||
Sbjct: 10089707 gaataccaagaccttctcaatgtgaagatggctttggacattgagattgc 10089756


>Sscrofa_Chr12 
||          Length = 63588571

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                      
Query: 505      gaccgcttcgccaactacatcgacaaggtgcgcttcctggagcagcagaacaag 558
                ||||||||||||| ||||||||| || ||||||||||| |||||||||||||||
Sbjct: 18701227 gaccgcttcgccagctacatcgagaaagtgcgcttcctagagcagcagaacaag 18701280



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Plus

                                                                            
Query: 1288     aaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggct 1347
                ||||| ||||||||||| ||||| |  || ||||| || ||||| || || ||| |||| 
Sbjct: 18705867 aaggacgagatggcccgccacctgcaggagtaccaggagctgctcaacgttaagctggcc 18705926

                                                      
Query: 1348     ctcgacattgagattgccacctacaggaagctgctgga 1385
                || ||||| ||||| |||||||||||||||||||||||
Sbjct: 18705927 ctggacatcgagatcgccacctacaggaagctgctgga 18705964


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 52,346,452
Number of extensions: 615
Number of successful extensions: 615
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 25
Length of query: 1922
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1900
Effective length of database: 2,808,408,574
Effective search space: 5335976290600
Effective search space used: 5335976290600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)