Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001195
(1080 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776494.1| gap junction beta-1 protein [Bos taurus]. 580 e-166
Alignment gi|NP_001077106.1| gap junction beta-2 protein [Bos taurus]. 333 2e-91
Alignment gi|NP_001153649.1| gap junction beta-6 protein [Bos taurus]. 323 1e-88
Alignment gi|NP_001015546.1| gap junction beta-6 protein [Bos taurus]. 323 1e-88
Alignment gi|NP_001178300.1| gap junction beta-4 protein [Bos taurus]. 268 6e-72
Alignment gi|XP_002686533.1| PREDICTED: gap junction beta-4 protein-like ... 266 2e-71
Alignment gi|NP_001098465.1| gap junction beta-3 protein [Bos taurus]. 260 1e-69
Alignment gi|NP_001192836.1| gap junction beta-5 protein [Bos taurus]. 251 6e-67
Alignment gi|XP_002686534.1| PREDICTED: gap junction protein, beta 5, 31.... 251 6e-67
Alignment gi|NP_001159768.1| gap junction alpha-3 protein [Bos taurus]. 231 1e-60
>ref|NP_776494.1| gap junction beta-1 protein [Bos taurus].
Length = 284
Score = 580 bits (1495), Expect = e-166
Identities = 281/284 (98%), Positives = 283/284 (99%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKC+AYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCDAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKT+FTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTIFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|NP_001077106.1| gap junction beta-2 protein [Bos taurus].
Length = 226
Score = 333 bits (853), Expect = 2e-91
Identities = 149/224 (66%), Positives = 192/224 (85%), Gaps = 1/224 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W GL+T+L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1 MDWGGLHTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 425
+VCYDH+FPISH+RLW+LQLI VSTPALLVAMHVA+ +H +K K +R E + +EE
Sbjct: 61 KNVCYDHYFPISHIRLWALQLIFVSTPALLVAMHVAYYRHEKKRKFIRGEIKTEFKDIEE 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K+ KV I G+LWWTY S+ FR++FEAAFMYVFY++Y G+AM RLVKC A+PCPNTVDC
Sbjct: 121 IKKQKVRIEGSLWWTYTGSIFFRVIFEAAFMYVFYVMYDGFAMQRLVKCNAWPCPNTVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 737
FVSRPTEKTVFTVFM+A SGICI+LNV E+ YL+ R C+ ++++
Sbjct: 181 FVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRFCSGKSKK 224
>ref|NP_001153649.1| gap junction beta-6 protein [Bos taurus].
Length = 261
Score = 323 bits (829), Expect = 1e-88
Identities = 151/259 (58%), Positives = 201/259 (77%), Gaps = 4/259 (1%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T + GVN+HST+IG+VW++V+F+FR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFVGGVNKHSTSIGKVWVTVLFVFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H ++ R E ++ LE+
Sbjct: 61 RNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHEAARRFRRGETRSEFKDLED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+KR KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKRQKVRIEGSLWWTYTSSIFFRIVFEAAFMYVFYFLYNGYHLPWVLKCGIQPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC---ARRAQRRSNPPSRKGSGGF 776
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C ++RAQ + PP+
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKAPPN------- 233
Query: 777 GHRLSPEYKQNEINKLLSE 833
H L E KQNE+N+L+SE
Sbjct: 234 -HALK-ESKQNEMNELISE 250
>ref|NP_001015546.1| gap junction beta-6 protein [Bos taurus].
Length = 261
Score = 323 bits (829), Expect = 1e-88
Identities = 151/259 (58%), Positives = 201/259 (77%), Gaps = 4/259 (1%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T + GVN+HST+IG+VW++V+F+FR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFVGGVNKHSTSIGKVWVTVLFVFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H ++ R E ++ LE+
Sbjct: 61 RNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHEAARRFRRGETRSEFKDLED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+KR KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKRQKVRIEGSLWWTYTSSIFFRIVFEAAFMYVFYFLYNGYHLPWVLKCGIQPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC---ARRAQRRSNPPSRKGSGGF 776
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C ++RAQ + PP+
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKAPPN------- 233
Query: 777 GHRLSPEYKQNEINKLLSE 833
H L E KQNE+N+L+SE
Sbjct: 234 -HALK-ESKQNEMNELISE 250
>ref|NP_001178300.1| gap junction beta-4 protein [Bos taurus].
Length = 266
Score = 268 bits (685), Expect = 6e-72
Identities = 132/266 (49%), Positives = 180/266 (67%), Gaps = 4/266 (1%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW L +LSGVN++STA+GR+WLSV+FIFR++V VVAAE VW DE+ F+CNT QPGC
Sbjct: 1 MNWAFLRDVLSGVNKYSTALGRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA++Q E+K R G HA L+
Sbjct: 61 PNVCYDQFFPVSHVRLWALQLILVTCPSLLVVMHVAYRQERERKHRRKHGPHAPSLYDNP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTY++S++F+ + +F+Y+F+ LY Y M R+V C PCPNTVDC
Sbjct: 121 DKKR-----GGLWWTYLLSLLFKAAVDVSFLYIFHRLYKDYDMPRVVACSESPCPNTVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR---RAQRRSNPPSRKGSGGF 776
++SRPTEK +FT FM+A + +CI+LN+ EV YL+ + C R S P+R
Sbjct: 176 YISRPTEKKIFTYFMVATAVLCILLNLGEVSYLVGKRCLEILGPRPRGSRRPARLLEACP 235
Query: 777 GHRLSPEYKQNEINKLLSEQDGSLKD 854
+ LSP + N +L + + + D
Sbjct: 236 PYALSPGEHPQDGNSVLMKAEMTTVD 261
>ref|XP_002686533.1| PREDICTED: gap junction beta-4 protein-like [Bos taurus].
Length = 266
Score = 266 bits (680), Expect = 2e-71
Identities = 122/218 (55%), Positives = 163/218 (74%), Gaps = 1/218 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW L +LSGVN++STA+GR+WLSV+FIFR++V VVAAE VW DE+ F+CNT QPGC
Sbjct: 1 MNWAFLRDVLSGVNKYSTALGRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA++Q E+K R G HA L+
Sbjct: 61 PNVCYDQFFPVSHVRLWALQLILVTCPSLLVVMHVAYRQERERKHRRKHGPHAPSLYDNP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTY++S++F+ + +F+Y+F+ LY Y M R+V C PCPNTVDC
Sbjct: 121 DKKR-----GGLWWTYLLSLLFKAAVDVSFLYIFHRLYKDYDMPRVVACSESPCPNTVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC 719
++SRPTEK +FT FM+A + +CI+LN+ EV YL+ + C
Sbjct: 176 YISRPTEKKIFTYFMVATAVLCILLNLGEVSYLVGKRC 213
>ref|NP_001098465.1| gap junction beta-3 protein [Bos taurus].
Length = 270
Score = 260 bits (665), Expect = 1e-69
Identities = 124/240 (51%), Positives = 168/240 (70%), Gaps = 2/240 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 1 MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD FFPIS++RLW+LQLI V+ P+LLV +HVA+++ E++ + G L+ +
Sbjct: 61 TNVCYDEFFPISNIRLWALQLIFVTCPSLLVILHVAYREERERRHRQKHGDQCTKLYDDT 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKC-EAYPCPNTVD 602
K+H G LWWTY++S+VF+LL E F+Y+ + L+ G+ M RLV+C PCPNTVD
Sbjct: 121 GKKH-----GGLWWTYLLSLVFKLLIEFLFLYLLHTLWYGFGMPRLVQCANVAPCPNTVD 175
Query: 603 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGH 782
C+++RPTEK +FT FM+ AS +CI+L E+ YLIF R R+ P GG GH
Sbjct: 176 CYIARPTEKKLFTYFMVGASAVCIVLTFCEICYLIFHRVVRSLHRKRQP------GGRGH 229
>ref|NP_001192836.1| gap junction beta-5 protein [Bos taurus].
Length = 273
Score = 251 bits (642), Expect = 6e-67
Identities = 123/255 (48%), Positives = 169/255 (66%), Gaps = 1/255 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW LLSG N++STA GRVWLS++FIFR++V +V AE VW D+ F C+T QPGC
Sbjct: 1 MNWGIFEGLLSGANKYSTAFGRVWLSLVFIFRVLVYLVTAERVWSDDHKDFDCDTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
++VC+D FFP+SHVRLW+LQLILV+ P+LLV MHVA++Q EKK G L+L+
Sbjct: 61 SNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYRQAREKKHQEAIGKDGGRLYLDP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTYV S+VF+ +A F+YVF+ +YP Y + R+VKC+ PCPN VDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKAGVDATFLYVFHSIYPRYTLPRVVKCQVAPCPNVVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+S+P EK +FT+FM+ + +CI+LN+ E+ YL+ + C + R + S HR
Sbjct: 176 FISKPEEKNIFTLFMVITALVCIVLNLVELAYLVSKRCRECLEAR-----KARSESLDHR 230
Query: 786 LSPEYKQNEINKLLS 830
L ++ LLS
Sbjct: 231 LDWVTSSSKQGDLLS 245
>ref|XP_002686534.1| PREDICTED: gap junction protein, beta 5, 31.1kDa-like [Bos taurus].
Length = 273
Score = 251 bits (642), Expect = 6e-67
Identities = 123/255 (48%), Positives = 169/255 (66%), Gaps = 1/255 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW LLSG N++STA GRVWLS++FIFR++V +V AE VW D+ F C+T QPGC
Sbjct: 1 MNWGIFEGLLSGANKYSTAFGRVWLSLVFIFRVLVYLVTAERVWSDDHKDFDCDTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
++VC+D FFP+SHVRLW+LQLILV+ P+LLV MHVA++Q EKK G L+L+
Sbjct: 61 SNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYRQAREKKHQEAIGKDGGRLYLDP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTYV S+VF+ +A F+YVF+ +YP Y + R+VKC+ PCPN VDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKAGVDATFLYVFHSIYPRYTLPRVVKCQVAPCPNVVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+S+P EK +FT+FM+ + +CI+LN+ E+ YL+ + C + R + S HR
Sbjct: 176 FISKPEEKNIFTLFMVITALVCIVLNLVELAYLVSKRCRECLEAR-----KARSESLDHR 230
Query: 786 LSPEYKQNEINKLLS 830
L ++ LLS
Sbjct: 231 LDWVTSSSKQGDLLS 245
>ref|NP_001159768.1| gap junction alpha-3 protein [Bos taurus].
Length = 407
Score = 231 bits (588), Expect = 1e-60
Identities = 119/245 (48%), Positives = 156/245 (63%), Gaps = 13/245 (5%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L LL HST IG+VWL+V+FIFRI+VL AAE VWGDE+S F CNT QPGC
Sbjct: 3 DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRL----------EGH 401
+VCYD FPISHVR W LQ+I VSTP L+ HV H +E+K EGH
Sbjct: 63 NVCYDRAFPISHVRFWVLQIIFVSTPTLIYLGHVLHLVRMEEKRKEREEEPPKAAGPEGH 122
Query: 402 ADPLHLEEVKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAY 581
DP + + R KV I+G L TYV +++F+ LFE F+ Y LY G+ + L +C+ +
Sbjct: 123 QDPAPVRD-DRGKVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GFQLKPLYRCDRW 180
Query: 582 PCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ---RRSNPP 752
PCPNTVDCF+SRPTEKT+F +FMLA + + ++LNV E+ +L ++ + R P
Sbjct: 181 PCPNTVDCFISRPTEKTIFILFMLAVACVSLLLNVLEIYHLGWKKLKQGMTSPFRPDTPG 240
Query: 753 SRKGS 767
SR GS
Sbjct: 241 SRAGS 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,434,141
Number of extensions: 1035287
Number of successful extensions: 4824
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4767
Number of HSP's successfully gapped: 35
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001195
(1080 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_857573.1| PREDICTED: similar to Gap junction beta-1 prote... 572 e-163
Alignment gi|XP_538073.1| PREDICTED: similar to Gap junction beta-1 prote... 572 e-163
Alignment gi|NP_001184077.1| gap junction beta-2 protein [Canis lupus fam... 327 2e-89
Alignment gi|XP_539604.1| PREDICTED: similar to Gap junction beta-4 prote... 267 1e-71
Alignment gi|XP_539603.2| PREDICTED: similar to connexin 31 [Canis famili... 264 1e-70
Alignment gi|XP_539605.2| PREDICTED: similar to gap junction protein, bet... 249 4e-66
Alignment gi|XP_858969.1| PREDICTED: similar to gap junction membrane cha... 224 8e-59
Alignment gi|XP_859009.1| PREDICTED: similar to gap junction membrane cha... 223 2e-58
Alignment gi|XP_858926.1| PREDICTED: similar to gap junction membrane cha... 222 5e-58
Alignment gi|XP_543178.2| PREDICTED: similar to Gap junction alpha-3 prot... 219 4e-57
>ref|XP_857573.1| PREDICTED: similar to Gap junction beta-1 protein (Connexin 32)
(Cx32) (GAP junction 28 kDa liver protein) isoform 2
[Canis familiaris].
Length = 283
Score = 572 bits (1475), Expect = e-163
Identities = 281/284 (98%), Positives = 281/284 (98%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>ref|XP_538073.1| PREDICTED: similar to Gap junction beta-1 protein (Connexin 32)
(Cx32) (GAP junction 28 kDa liver protein) isoform 1
[Canis familiaris].
Length = 283
Score = 572 bits (1475), Expect = e-163
Identities = 281/284 (98%), Positives = 281/284 (98%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>ref|NP_001184077.1| gap junction beta-2 protein [Canis lupus familiaris].
Length = 226
Score = 327 bits (837), Expect = 2e-89
Identities = 145/224 (64%), Positives = 191/224 (85%), Gaps = 1/224 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W+ L T+L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1 MDWSTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 425
+VCYDH+FPISH+RLW+LQLI VSTPALLVAMHVA+++H +K K ++ E ++ +EE
Sbjct: 61 KNVCYDHYFPISHIRLWALQLIFVSTPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEE 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K KV I G+LWWTY S+ FR++FEA FMYVFY++Y G++M RLVKC A+PCPNTVDC
Sbjct: 121 IKSQKVRIEGSLWWTYTSSIFFRVIFEAVFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 737
FVSRPTEKTVFTVFM+A SGICI+LNV E+ YL+ R C+ ++++
Sbjct: 181 FVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRYCSGKSKK 224
>ref|XP_539604.1| PREDICTED: similar to Gap junction beta-4 protein (Connexin 30.3)
(Cx30.3) [Canis familiaris].
Length = 316
Score = 267 bits (682), Expect = 1e-71
Identities = 121/231 (52%), Positives = 164/231 (70%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW L LLSGVN++STA+GR+WLSV+F+FR++V VVAAE VW DE+ F+CNT QPGC
Sbjct: 51 MNWASLQGLLSGVNKYSTALGRIWLSVVFLFRVLVYVVAAEEVWDDEQKDFVCNTRQPGC 110
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA++Q E+K G P +
Sbjct: 111 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYRQERERKHRLKHGPGAPSLYDNP 170
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
+ + G LWWTY++S++F+ ++ F+Y+F+ LY Y M R+V C PCP+TVDC+
Sbjct: 171 SKKR----GGLWWTYLLSLIFKAAVDSGFLYIFHRLYQDYDMPRVVACSEAPCPHTVDCY 226
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRK 761
+SRPTEK VFT FM+A + ICI+LN++EV YL+ + C R P +
Sbjct: 227 ISRPTEKKVFTYFMVATAVICILLNLSEVTYLVGKRCLETFHPRRRRPHHR 277
>ref|XP_539603.2| PREDICTED: similar to connexin 31 [Canis familiaris].
Length = 434
Score = 264 bits (675), Expect = 1e-70
Identities = 124/232 (53%), Positives = 167/232 (71%), Gaps = 2/232 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 165 MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGC 224
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK-MLRLEGHADPLHLEE 425
+VCYD FFPIS++RLW+LQLI V+ P+LLV +HVA+++ E++ L+ L+ +
Sbjct: 225 TNVCYDDFFPISNIRLWALQLIFVTCPSLLVMLHVAYREERERRHRLKHGDQCARLYADA 284
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKC-EAYPCPNTVD 602
K+H G LWWTY++S+VF+L E F+YV + L+ G+AM RLV+C PCPN VD
Sbjct: 285 GKKH-----GGLWWTYLLSLVFKLAIELLFLYVLHTLWRGFAMPRLVQCANVAPCPNVVD 339
Query: 603 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSR 758
C+++RPTEK VFT FM+ AS +CI+L + E+ YLIF RR R +P SR
Sbjct: 340 CYIARPTEKKVFTYFMVGASAVCIVLTICEICYLIFHRLLRRVTRNRSPKSR 391
>ref|XP_539605.2| PREDICTED: similar to gap junction protein, beta 5 (connexin 31.1)
[Canis familiaris].
Length = 273
Score = 249 bits (635), Expect = 4e-66
Identities = 115/218 (52%), Positives = 157/218 (72%), Gaps = 1/218 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW LLSGVN++STA GR+WLS++FIFR++V +V AE VW D+ F CNT QPGC
Sbjct: 1 MNWGVFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVWSDDHKDFDCNTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH-ADPLHLEE 425
+VC+D FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EKK + G L+L+
Sbjct: 61 TNVCFDQFFPVSHVRLWALQLILVTCPSLLVLMHVAYREAQEKKHRQAAGEGGGRLYLDP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTYV S+V + +AAF+ VF+ YP Y + R+VKC PCPNTVDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVCKAGVDAAFLCVFHSFYPKYTLPRVVKCHIAPCPNTVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC 719
F+S+P+EK +FT+FM+ + +CI+LN+ E+ YL+ + C
Sbjct: 176 FISKPSEKNIFTLFMVTTAVVCILLNLVELAYLVGKRC 213
>ref|XP_858969.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 5 [Canis familiaris].
Length = 411
Score = 224 bits (572), Expect = 8e-59
Identities = 107/212 (50%), Positives = 144/212 (67%), Gaps = 1/212 (0%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L +L VN HST IGRVWL+V+FIFRI++L AAE VWGDE+S F+CNT QPGC
Sbjct: 3 DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEVK 431
+VCYD FPISH+RLW LQ+I VSTP+L+ H H +E+K E EE+K
Sbjct: 63 NVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEKRKEREA-------EELK 115
Query: 432 -RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
K + GTL TY+ ++F+ LFE F+ Y LY G+ ++ L +C +PCPN VDCF
Sbjct: 116 GAKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY-GFRILPLYRCSRWPCPNVVDCF 174
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYL 704
VSRPTEKT+F +FML+ + + + LN+ E+ +L
Sbjct: 175 VSRPTEKTIFILFMLSVASVSLFLNILEMSHL 206
>ref|XP_859009.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 6 [Canis familiaris].
Length = 418
Score = 223 bits (568), Expect = 2e-58
Identities = 107/214 (50%), Positives = 146/214 (68%), Gaps = 3/214 (1%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L +L VN HST IGRVWL+V+FIFRI++L AAE VWGDE+S F+CNT QPGC
Sbjct: 3 DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLE--- 422
+VCYD FPISH+RLW LQ+I VSTP+L+ H H +E+K R E A+ L +
Sbjct: 63 NVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEK--RKEREAEELCQQAAG 120
Query: 423 EVKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVD 602
+ K + GTL TY+ ++F+ LFE F+ Y LY G+ ++ L +C +PCPN VD
Sbjct: 121 DGGDRKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY-GFRILPLYRCSRWPCPNVVD 179
Query: 603 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYL 704
CFVSRPTEKT+F +FML+ + + + LN+ E+ +L
Sbjct: 180 CFVSRPTEKTIFILFMLSVASVSLFLNILEMSHL 213
>ref|XP_858926.1| PREDICTED: similar to gap junction membrane channel protein alpha 8
isoform 4 [Canis familiaris].
Length = 419
Score = 222 bits (565), Expect = 5e-58
Identities = 107/215 (49%), Positives = 145/215 (67%), Gaps = 4/215 (1%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L +L VN HST IGRVWL+V+FIFRI++L AAE VWGDE+S F+CNT QPGC
Sbjct: 3 DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLE--- 422
+VCYD FPISH+RLW LQ+I VSTP+L+ H H +E+K R E A+ L +
Sbjct: 63 NVCYDEAFPISHIRLWVLQIIFVSTPSLVYVGHAVHHVRMEEK--RKEREAEELIKKGGN 120
Query: 423 -EVKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTV 599
K + GTL TY+ ++F+ LFE F+ Y LY G+ ++ L +C +PCPN V
Sbjct: 121 SSKGAKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLY-GFRILPLYRCSRWPCPNVV 179
Query: 600 DCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYL 704
DCFVSRPTEKT+F +FML+ + + + LN+ E+ +L
Sbjct: 180 DCFVSRPTEKTIFILFMLSVASVSLFLNILEMSHL 214
>ref|XP_543178.2| PREDICTED: similar to Gap junction alpha-3 protein (Connexin 46)
(Cx46) [Canis familiaris].
Length = 447
Score = 219 bits (558), Expect = 4e-57
Identities = 117/258 (45%), Positives = 159/258 (61%), Gaps = 24/258 (9%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L LL HST IG+VWL+V+FIFRI+VL AAE VWGDE+S F CNT QPGC
Sbjct: 3 DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK-------MLRLE----- 395
+VCYD FPISH+R W LQ+I VSTP L+ HV H +E+K +LR E
Sbjct: 63 NVCYDRAFPISHIRFWVLQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEELLRAELPHPG 122
Query: 396 --------GHAD-PLHLEEVKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGY 548
G D PL + R +V I+G L TYV +++F+ LFE F+ Y LY G+
Sbjct: 123 PAARCGPGGQKDRPLRDD---RGRVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GF 178
Query: 549 AMVRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR- 725
+ L +C+ +PCPNTVDCF+SRPTEKT+F +FMLA + + ++LN+ E+ +L ++ +
Sbjct: 179 ELKPLYRCDRWPCPNTVDCFISRPTEKTIFIIFMLAVACVSLLLNMLEIYHLGWKKLKQG 238
Query: 726 --RAQRRSNPPSRKGSGG 773
R +P + K GG
Sbjct: 239 MTNHPRADSPEATKPGGG 256
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,970,786
Number of extensions: 1056134
Number of successful extensions: 4977
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 4937
Number of HSP's successfully gapped: 27
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001195
(1080 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091111.1| gap junction beta-1 protein [Homo sapiens]. 565 e-161
Alignment gi|NP_000157.1| gap junction beta-1 protein [Homo sapiens]. 565 e-161
Alignment gi|NP_003995.2| gap junction beta-2 protein [Homo sapiens]. 327 1e-89
Alignment gi|NP_001103689.1| gap junction beta-6 protein [Homo sapiens]. 323 2e-88
Alignment gi|NP_001103690.1| gap junction beta-6 protein [Homo sapiens]. 323 2e-88
Alignment gi|NP_001103691.1| gap junction beta-6 protein [Homo sapiens]. 323 2e-88
Alignment gi|NP_006774.2| gap junction beta-6 protein [Homo sapiens]. 323 2e-88
Alignment gi|NP_694944.1| gap junction beta-4 protein [Homo sapiens]. 261 1e-69
Alignment gi|NP_005259.1| gap junction beta-5 protein [Homo sapiens]. 256 2e-68
Alignment gi|NP_001005752.1| gap junction beta-3 protein [Homo sapiens]. 245 4e-65
>ref|NP_001091111.1| gap junction beta-1 protein [Homo sapiens].
Length = 283
Score = 565 bits (1456), Expect = e-161
Identities = 277/284 (97%), Positives = 278/284 (97%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYD FFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDQFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKC+ YPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCDVYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>ref|NP_000157.1| gap junction beta-1 protein [Homo sapiens].
Length = 283
Score = 565 bits (1456), Expect = e-161
Identities = 277/284 (97%), Positives = 278/284 (97%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYD FFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDQFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKC+ YPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCDVYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>ref|NP_003995.2| gap junction beta-2 protein [Homo sapiens].
Length = 226
Score = 327 bits (838), Expect = 1e-89
Identities = 146/224 (65%), Positives = 191/224 (85%), Gaps = 1/224 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L T+L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1 MDWGTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 425
+VCYDH+FPISH+RLW+LQLI VSTPALLVAMHVA+++H +K K ++ E ++ +EE
Sbjct: 61 KNVCYDHYFPISHIRLWALQLIFVSTPALLVAMHVAYRRHEKKRKFIKGEIKSEFKDIEE 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K KV I G+LWWTY S+ FR++FEAAFMYVFY++Y G++M RLVKC A+PCPNTVDC
Sbjct: 121 IKTQKVRIEGSLWWTYTSSIFFRVIFEAAFMYVFYVMYDGFSMQRLVKCNAWPCPNTVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 737
FVSRPTEKTVFTVFM+A SGICI+LNV E+ YL+ R C+ ++++
Sbjct: 181 FVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRYCSGKSKK 224
>ref|NP_001103689.1| gap junction beta-6 protein [Homo sapiens].
Length = 261
Score = 323 bits (828), Expect = 2e-88
Identities = 150/256 (58%), Positives = 197/256 (76%), Gaps = 1/256 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T + GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K R E D +E+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K+ KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKKQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C RR++R + H
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHP-----NHA 235
Query: 786 LSPEYKQNEINKLLSE 833
L E KQNE+N+L+S+
Sbjct: 236 LK-ESKQNEMNELISD 250
>ref|NP_001103690.1| gap junction beta-6 protein [Homo sapiens].
Length = 261
Score = 323 bits (828), Expect = 2e-88
Identities = 150/256 (58%), Positives = 197/256 (76%), Gaps = 1/256 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T + GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K R E D +E+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K+ KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKKQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C RR++R + H
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHP-----NHA 235
Query: 786 LSPEYKQNEINKLLSE 833
L E KQNE+N+L+S+
Sbjct: 236 LK-ESKQNEMNELISD 250
>ref|NP_001103691.1| gap junction beta-6 protein [Homo sapiens].
Length = 261
Score = 323 bits (828), Expect = 2e-88
Identities = 150/256 (58%), Positives = 197/256 (76%), Gaps = 1/256 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T + GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K R E D +E+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K+ KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKKQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C RR++R + H
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHP-----NHA 235
Query: 786 LSPEYKQNEINKLLSE 833
L E KQNE+N+L+S+
Sbjct: 236 LK-ESKQNEMNELISD 250
>ref|NP_006774.2| gap junction beta-6 protein [Homo sapiens].
Length = 261
Score = 323 bits (828), Expect = 2e-88
Identities = 150/256 (58%), Positives = 197/256 (76%), Gaps = 1/256 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T + GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K R E D +E+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETTRKFRRGEKRNDFKDIED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K+ KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKKQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+SRPTEKTVFT+FM++AS IC++LNVAE+ YL+ + C RR++R + H
Sbjct: 181 FISRPTEKTVFTIFMISASVICMLLNVAELCYLLLKVCFRRSKRAQTQKNHP-----NHA 235
Query: 786 LSPEYKQNEINKLLSE 833
L E KQNE+N+L+S+
Sbjct: 236 LK-ESKQNEMNELISD 250
>ref|NP_694944.1| gap junction beta-4 protein [Homo sapiens].
Length = 266
Score = 261 bits (666), Expect = 1e-69
Identities = 117/217 (53%), Positives = 159/217 (73%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW L LLSGVN++ST + R+WLSV+FIFR++V VVAAE VW DE+ F+CNT QPGC
Sbjct: 1 MNWAFLQGLLSGVNKYSTVLSRIWLSVVFIFRVLVYVVAAEEVWDDEQKDFVCNTKQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ E+K G P + +
Sbjct: 61 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREERERKHHLKHGPNAPSLYDNL 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
+ + G LWWTY++S++F+ +A F+Y+F+ LY Y M R+V C PCP+TVDC+
Sbjct: 121 SKKR----GGLWWTYLLSLIFKAAVDAGFLYIFHRLYKDYDMPRVVACSVEPCPHTVDCY 176
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC 719
+SRPTEK VFT FM+ + ICI+LN++EV YL+ + C
Sbjct: 177 ISRPTEKKVFTYFMVTTAAICILLNLSEVFYLVGKRC 213
>ref|NP_005259.1| gap junction beta-5 protein [Homo sapiens].
Length = 273
Score = 256 bits (655), Expect = 2e-68
Identities = 120/228 (52%), Positives = 166/228 (72%), Gaps = 6/228 (2%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW+ LLSGVN++STA GR+WLS++FIFR++V +V AE VW D+ F CNT QPGC
Sbjct: 1 MNWSIFEGLLSGVNKYSTAFGRIWLSLVFIFRVLVYLVTAERVWSDDHKDFDCNTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
++VC+D FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EK+ G ++ L+L
Sbjct: 61 SNVCFDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREVQEKRHREAHGENSGRLYLNP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTYV S+VF+ + AF+YVF+ YP Y + +VKC A PCPN VDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKASVDIAFLYVFHSFYPKYILPPVVKCHADPCPNIVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRAC-----ARRAQ 734
F+S+P+EK +FT+FM+A + ICI+LN+ E++YL+ + C AR+AQ
Sbjct: 176 FISKPSEKNIFTLFMVATAAICILLNLVELIYLVSKRCHECLAARKAQ 223
>ref|NP_001005752.1| gap junction beta-3 protein [Homo sapiens].
Length = 270
Score = 245 bits (626), Expect = 4e-65
Identities = 112/215 (52%), Positives = 158/215 (73%), Gaps = 2/215 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 1 MDWKTLQALLSGVNKYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTKQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD++FPIS++RLW+LQLI V+ P+LLV +HVA+++ E++ + G L+
Sbjct: 61 TNVCYDNYFPISNIRLWALQLIFVTCPSLLVILHVAYREERERRHRQKHGDQCAKLYDNA 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKC-EAYPCPNTVD 602
K+H G LWWTY+ S++F+L+ E F+Y+ + L+ G+ M RLV+C PCPN VD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIEFLFLYLLHTLWHGFNMPRLVQCANVAPCPNIVD 175
Query: 603 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLI 707
C+++RPTEK +FT FM+ AS +CI+L + E+ YLI
Sbjct: 176 CYIARPTEKKIFTYFMVGASAVCIVLTICELCYLI 210
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,217,744
Number of extensions: 1036604
Number of successful extensions: 4564
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4515
Number of HSP's successfully gapped: 32
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001195
(1080 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032150.2| gap junction beta-1 protein [Mus musculus]. 569 e-162
Alignment gi|NP_001010937.1| gap junction beta-6 protein [Mus musculus]. 325 5e-89
Alignment gi|NP_032154.1| gap junction beta-6 protein [Mus musculus]. 325 5e-89
Alignment gi|NP_032151.1| gap junction beta-2 protein [Mus musculus]. 319 2e-87
Alignment gi|NP_032153.1| gap junction beta-4 protein [Mus musculus]. 264 1e-70
Alignment gi|NP_034421.1| gap junction beta-5 protein [Mus musculus]. 257 1e-68
Alignment gi|NP_001153484.1| gap junction beta-3 protein [Mus musculus]. 257 1e-68
Alignment gi|NP_032152.1| gap junction beta-3 protein [Mus musculus]. 257 1e-68
Alignment gi|NP_058671.2| gap junction alpha-3 protein [Mus musculus]. 219 2e-57
Alignment gi|NP_032149.1| gap junction alpha-8 protein [Mus musculus]. 216 2e-56
>ref|NP_032150.2| gap junction beta-1 protein [Mus musculus].
Length = 283
Score = 569 bits (1467), Expect = e-162
Identities = 279/284 (98%), Positives = 280/284 (98%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGH DPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHGDPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEA FMYVFYLLYPGYAMVRLVKCEA+PCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAVFMYVFYLLYPGYAMVRLVKCEAFPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLI RACARRAQRRSNPPSRKGS GFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIIRACARRAQRRSNPPSRKGS-GFGHRL 239
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 240 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 283
>ref|NP_001010937.1| gap junction beta-6 protein [Mus musculus].
Length = 261
Score = 325 bits (832), Expect = 5e-89
Identities = 154/260 (59%), Positives = 202/260 (77%), Gaps = 5/260 (1%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T++ GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTVIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K +R E + LE+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETARKFIRGEKRNEFKDLED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+KR KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKRQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR----RSNPPSRKGSGG 773
F+SRPTEKTVFTVFM++AS IC++LNVAE+ YL+ + C RR++R R++P
Sbjct: 181 FISRPTEKTVFTVFMISASVICMLLNVAELCYLLLKLCFRRSKRTQAQRNHP-------- 232
Query: 774 FGHRLSPEYKQNEINKLLSE 833
H L E KQNE+N+L+S+
Sbjct: 233 -NHALK-ESKQNEMNELISD 250
>ref|NP_032154.1| gap junction beta-6 protein [Mus musculus].
Length = 261
Score = 325 bits (832), Expect = 5e-89
Identities = 154/260 (59%), Positives = 202/260 (77%), Gaps = 5/260 (1%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L+T++ GVN+HST+IG+VW++VIFIFR+M+LVVAA+ VWGDE+ F+CNTLQPGC
Sbjct: 1 MDWGTLHTVIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQH-IEKKMLRLEGHADPLHLEE 425
+VCYDHFFP+SH+RLW+LQLI VSTPALLVAMHVA+ +H +K +R E + LE+
Sbjct: 61 KNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAYYRHETARKFIRGEKRNEFKDLED 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+KR KV I G+LWWTY S+ FR++FEAAFMYVFY LY GY + ++KC PCPN VDC
Sbjct: 121 IKRQKVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHLPWVLKCGIDPCPNLVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR----RSNPPSRKGSGG 773
F+SRPTEKTVFTVFM++AS IC++LNVAE+ YL+ + C RR++R R++P
Sbjct: 181 FISRPTEKTVFTVFMISASVICMLLNVAELCYLLLKLCFRRSKRTQAQRNHP-------- 232
Query: 774 FGHRLSPEYKQNEINKLLSE 833
H L E KQNE+N+L+S+
Sbjct: 233 -NHALK-ESKQNEMNELISD 250
>ref|NP_032151.1| gap junction beta-2 protein [Mus musculus].
Length = 226
Score = 319 bits (818), Expect = 2e-87
Identities = 142/224 (63%), Positives = 187/224 (83%), Gaps = 1/224 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L ++L GVN+HST+IG++WL+V+FIFRIM+LVVAA+ VWGDE++ F+CNTLQPGC
Sbjct: 1 MDWGTLQSILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEK-KMLRLEGHADPLHLEE 425
+VCYDH FPISH+RLW+LQLI+VSTPALLVAMHVA+++H +K K ++ E + +EE
Sbjct: 61 KNVCYDHHFPISHIRLWALQLIMVSTPALLVAMHVAYRRHEKKRKFMKGEIKNEFKDIEE 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
+K KV I G+LWWTY S+ FR++FEA FMYVFY++Y G+ M RLVKC A+PCPNTVDC
Sbjct: 121 IKTQKVRIEGSLWWTYTTSIFFRVIFEAVFMYVFYIMYNGFFMQRLVKCNAWPCPNTVDC 180
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQR 737
F+SRPTEKTVFTVFM++ SGICI+LN+ E+ YL R C+ +++R
Sbjct: 181 FISRPTEKTVFTVFMISVSGICILLNITELCYLFVRYCSGKSKR 224
>ref|NP_032153.1| gap junction beta-4 protein [Mus musculus].
Length = 266
Score = 264 bits (674), Expect = 1e-70
Identities = 119/231 (51%), Positives = 166/231 (71%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW L +LSGVN++STA+GR+WLSV+FIFR++V VVAAE VW D++ FICNT QPGC
Sbjct: 1 MNWGFLQGILSGVNKYSTALGRIWLSVVFIFRVLVYVVAAEEVWDDDQKDFICNTKQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ E+K G P +
Sbjct: 61 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREERERKHRLKHGPNAPALYSNL 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
+ + G LWWTY++S++F+ ++ F+Y+F+ +Y Y M R+V C PCP+TVDC+
Sbjct: 121 SKKR----GGLWWTYLLSLIFKAAVDSGFLYIFHCIYKDYDMPRVVACSVTPCPHTVDCY 176
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRK 761
++RPTEK VFT FM+ + ICI+LN++EVVYL+ + C + R SR+
Sbjct: 177 IARPTEKKVFTYFMVVTAAICILLNLSEVVYLVGKRCMEVFRPRRRKASRR 227
>ref|NP_034421.1| gap junction beta-5 protein [Mus musculus].
Length = 271
Score = 257 bits (657), Expect = 1e-68
Identities = 117/227 (51%), Positives = 159/227 (70%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW+ LLSGVN++STA GR+WLS++F+FR++V +V AE VWGD++ F CNT QPGC
Sbjct: 1 MNWSVFEGLLSGVNKYSTAFGRIWLSLVFVFRVLVYLVTAERVWGDDQKDFDCNTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EKK G
Sbjct: 61 TNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYRKAREKKYQEKIGEGYLYPNPGK 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KR G LWWTYV S+ F+ + F+Y+F+ YP Y + +VKC A PCPNTVDCF
Sbjct: 121 KR------GGLWWTYVFSLSFKATIDIIFLYLFHAFYPRYTLPSMVKCHAEPCPNTVDCF 174
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNP 749
+++P+EK +F VFM+ + ICI+LN+ E++YL+ + C+ AQ R P
Sbjct: 175 IAKPSEKNIFIVFMVVTAVICILLNLVELIYLVIKRCSECAQLRRPP 221
>ref|NP_001153484.1| gap junction beta-3 protein [Mus musculus].
Length = 270
Score = 257 bits (656), Expect = 1e-68
Identities = 119/221 (53%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 1 MDWKKLQDLLSGVNQYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD+FFPIS++RLW+LQLI V+ P++LV +HVA+++ E+K + G L+
Sbjct: 61 TNVCYDNFFPISNIRLWALQLIFVTCPSMLVILHVAYREERERKHRQKHGEQCAKLYSHP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEA-YPCPNTVD 602
K+H G LWWTY+ S++F+L+ E F+YV + L+ G+ M RLV+C + PCPNTVD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIELVFLYVLHTLWHGFTMPRLVQCASIVPCPNTVD 175
Query: 603 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 725
C+++RPTEK VFT FM+ AS +CIIL + E+ YLIF R
Sbjct: 176 CYIARPTEKKVFTYFMVGASAVCIILTICEICYLIFHRIMR 216
>ref|NP_032152.1| gap junction beta-3 protein [Mus musculus].
Length = 270
Score = 257 bits (656), Expect = 1e-68
Identities = 119/221 (53%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L LLSGVN++STA GR+WLSV+F+FR++V VVAAE VWGDE+ F CNT QPGC
Sbjct: 1 MDWKKLQDLLSGVNQYSTAFGRIWLSVVFVFRVLVYVVAAERVWGDEQKDFDCNTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD+FFPIS++RLW+LQLI V+ P++LV +HVA+++ E+K + G L+
Sbjct: 61 TNVCYDNFFPISNIRLWALQLIFVTCPSMLVILHVAYREERERKHRQKHGEQCAKLYSHP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEA-YPCPNTVD 602
K+H G LWWTY+ S++F+L+ E F+YV + L+ G+ M RLV+C + PCPNTVD
Sbjct: 121 GKKH-----GGLWWTYLFSLIFKLIIELVFLYVLHTLWHGFTMPRLVQCASIVPCPNTVD 175
Query: 603 CFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 725
C+++RPTEK VFT FM+ AS +CIIL + E+ YLIF R
Sbjct: 176 CYIARPTEKKVFTYFMVGASAVCIILTICEICYLIFHRIMR 216
>ref|NP_058671.2| gap junction alpha-3 protein [Mus musculus].
Length = 417
Score = 219 bits (559), Expect = 2e-57
Identities = 111/245 (45%), Positives = 152/245 (62%), Gaps = 19/245 (7%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L LL HST IG+VWL+V+FIFRI+VL AAE VWGDE+S F CNT QPGC
Sbjct: 3 DWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEEVWGDEQSDFTCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKK-------MLRLEGHADP 410
+VCYD FPISH+R W+LQ+I VSTP L+ HV H +E+K +LR +
Sbjct: 63 NVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEELLRRDNPQHG 122
Query: 411 LHLEEVK------------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAM 554
E ++ R KV I+G L TYV +++F+ LFE F+ Y LY G+ +
Sbjct: 123 RGREPMRTGSPRDPPLRDDRGKVRIAGALLRTYVFNIIFKTLFEVGFIAGQYFLY-GFQL 181
Query: 555 VRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQ 734
L +C+ +PCPNTVDCF+SRPTEKT+F +FMLA + ++LN+ E+ +L ++ +
Sbjct: 182 QPLYRCDRWPCPNTVDCFISRPTEKTIFVIFMLAVACASLVLNMLEIYHLGWKKLKQGVT 241
Query: 735 RRSNP 749
NP
Sbjct: 242 NHFNP 246
>ref|NP_032149.1| gap junction alpha-8 protein [Mus musculus].
Length = 440
Score = 216 bits (551), Expect = 2e-56
Identities = 119/299 (39%), Positives = 167/299 (55%), Gaps = 22/299 (7%)
Frame = +3
Query: 72 NWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGCN 251
+W+ L +L VN HST IGRVWL+V+FIFRI++L AAE VWGDE+S F+CNT QPGC
Sbjct: 3 DWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPGCE 62
Query: 252 SVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLE------------ 395
+VCYD FPISH+RLW LQ+I VSTP+L+ H H +E+K E
Sbjct: 63 NVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHHVRMEEKRKDREAEELCQQSRSNG 122
Query: 396 GHADPLHLEEVK----------RHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPG 545
G P+ ++ K + GTL TYV ++F+ LFE F+ Y LY G
Sbjct: 123 GERVPIAPDQASIRKSSSSSKGTKKFRLEGTLLRTYVCHIIFKTLFEVGFIVGHYFLY-G 181
Query: 546 YAMVRLVKCEAYPCPNTVDCFVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACAR 725
+ ++ L +C +PCPN VDCFVSRPTEKT+F +FML+ + + + LN+ E+ +L +
Sbjct: 182 FRILPLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVAFVSLFLNIMEMSHLGMKGIRS 241
Query: 726 RAQRRSNPPSRKGSGGFGHRLSPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKS 902
+R P + + H ++ Q L E++ K + P T G+ E S
Sbjct: 242 AFKRPVEQPLGEIAEKSLHSIAVSSIQKAKGYQLLEEE---KIVSHYFPLTEVGMVETS 297
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,954,132
Number of extensions: 869333
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 3664
Number of HSP's successfully gapped: 32
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001195
(1080 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003135216.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003135215.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003135213.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003135214.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003135212.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003135211.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003135210.1| PREDICTED: gap junction beta-1 protein-like ... 583 e-167
Alignment gi|XP_003127791.1| PREDICTED: gap junction beta-5 protein-like ... 261 4e-70
Alignment gi|XP_003127789.1| PREDICTED: gap junction beta-5 protein-like ... 261 4e-70
Alignment gi|XP_003121336.1| PREDICTED: gap junction beta-7 protein-like ... 239 3e-63
>ref|XP_003135216.1| PREDICTED: gap junction beta-1 protein-like isoform 7 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003135215.1| PREDICTED: gap junction beta-1 protein-like isoform 6 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003135213.1| PREDICTED: gap junction beta-1 protein-like isoform 4 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003135214.1| PREDICTED: gap junction beta-1 protein-like isoform 5 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003135212.1| PREDICTED: gap junction beta-1 protein-like isoform 3 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003135211.1| PREDICTED: gap junction beta-1 protein-like isoform 2 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003135210.1| PREDICTED: gap junction beta-1 protein-like isoform 1 [Sus scrofa].
Length = 284
Score = 583 bits (1503), Expect = e-167
Identities = 284/284 (100%), Positives = 284/284 (100%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC
Sbjct: 1 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV
Sbjct: 61 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 120
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF
Sbjct: 121 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 180
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 788
VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL
Sbjct: 181 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHRL 240
Query: 789 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 920
SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC
Sbjct: 241 SPEYKQNEINKLLSEQDGSLKDILRRSPGTGAGLAEKSDRCSAC 284
>ref|XP_003127791.1| PREDICTED: gap junction beta-5 protein-like isoform 3 [Sus scrofa].
Length = 273
Score = 261 bits (668), Expect = 4e-70
Identities = 127/241 (52%), Positives = 167/241 (69%), Gaps = 1/241 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW LLSGVN++STA GRVWLS++FIFR++V +V AE VW D+ F C+T QPGC
Sbjct: 1 MNWGVFEGLLSGVNKYSTAFGRVWLSLVFIFRLLVYLVTAERVWSDDHKDFSCDTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EKK G L+L+
Sbjct: 61 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREAREKKHRERAGKDGGRLYLDP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTYV S+VF+ +AAF+YVF+L YP Y + R+VKC A PCPNTVDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKAGVDAAFLYVFHLFYPKYTLPRVVKCHAAPCPNTVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+S+P EK +FT+FM+ + ICI+LN+ E+ YL+ + C R + + G GHR
Sbjct: 176 FISKPAEKNIFTLFMVITAVICILLNLVELAYLVSKRCRECLAER-----KARAKGVGHR 230
Query: 786 L 788
L
Sbjct: 231 L 231
>ref|XP_003127789.1| PREDICTED: gap junction beta-5 protein-like isoform 1 [Sus scrofa].
Length = 273
Score = 261 bits (668), Expect = 4e-70
Identities = 127/241 (52%), Positives = 167/241 (69%), Gaps = 1/241 (0%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
MNW LLSGVN++STA GRVWLS++FIFR++V +V AE VW D+ F C+T QPGC
Sbjct: 1 MNWGVFEGLLSGVNKYSTAFGRVWLSLVFIFRLLVYLVTAERVWSDDHKDFSCDTRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEG-HADPLHLEE 425
+VCYD FFP+SHVRLW+LQLILV+ P+LLV MHVA+++ EKK G L+L+
Sbjct: 61 PNVCYDEFFPVSHVRLWALQLILVTCPSLLVVMHVAYREAREKKHRERAGKDGGRLYLDP 120
Query: 426 VKRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDC 605
K+ G LWWTYV S+VF+ +AAF+YVF+L YP Y + R+VKC A PCPNTVDC
Sbjct: 121 GKKR-----GGLWWTYVCSLVFKAGVDAAFLYVFHLFYPKYTLPRVVKCHAAPCPNTVDC 175
Query: 606 FVSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFRACARRAQRRSNPPSRKGSGGFGHR 785
F+S+P EK +FT+FM+ + ICI+LN+ E+ YL+ + C R + + G GHR
Sbjct: 176 FISKPAEKNIFTLFMVITAVICILLNLVELAYLVSKRCRECLAER-----KARAKGVGHR 230
Query: 786 L 788
L
Sbjct: 231 L 231
>ref|XP_003121336.1| PREDICTED: gap junction beta-7 protein-like [Sus scrofa].
Length = 262
Score = 239 bits (609), Expect = 3e-63
Identities = 110/215 (51%), Positives = 157/215 (73%)
Frame = +3
Query: 69 MNWTGLYTLLSGVNRHSTAIGRVWLSVIFIFRIMVLVVAAESVWGDEKSSFICNTLQPGC 248
M+W L LLSGVN++ST IGR+WL+V+FIFR++V +VAAE VW DE+ F CN QPGC
Sbjct: 1 MSWMFLRDLLSGVNKYSTGIGRIWLAVVFIFRLLVYMVAAEHVWKDEQKEFECNIRQPGC 60
Query: 249 NSVCYDHFFPISHVRLWSLQLILVSTPALLVAMHVAHQQHIEKKMLRLEGHADPLHLEEV 428
+VC+D+FFPIS VRLW+LQLI+VSTP+LLV +HVA++Q EK+ H +++
Sbjct: 61 ENVCFDYFFPISQVRLWALQLIMVSTPSLLVVLHVAYRQGREKR-----------HRKKL 109
Query: 429 KRHKVHISGTLWWTYVISVVFRLLFEAAFMYVFYLLYPGYAMVRLVKCEAYPCPNTVDCF 608
+ G LW+TY+IS+V + FE F+ +FY LY G+++ L+KC+ PCPNTVDCF
Sbjct: 110 YVSPGTMDGGLWYTYLISLVVKTGFEIGFLVLFYKLYGGFSVPYLMKCDLQPCPNTVDCF 169
Query: 609 VSRPTEKTVFTVFMLAASGICIILNVAEVVYLIFR 713
VS+PTEKT+F +F++ S +C++LN E+ +L+ +
Sbjct: 170 VSKPTEKTIFILFLVITSCLCVVLNFTELSFLVLK 204
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,456,100
Number of extensions: 667052
Number of successful extensions: 3123
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3100
Number of HSP's successfully gapped: 26
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001195
(1080 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 2028 0.0
>Sscrofa_ChrX
|| Length = 144288218
Score = 2028 bits (1023), Expect = 0.0
Identities = 1029/1031 (99%)
Strand = Plus / Minus
Query: 50 caggtgtgaatgaggcaggatgaactggacaggtctgtacaccttgctcagcggcgtgaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64846152 caggtgtgaatgaggcaggatgaactggacaggtctgtacaccttgctcagcggcgtgaa 64846093
Query: 110 ccggcattctactgccattggccgagtatggctctcagtcatcttcatcttcagaatcat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64846092 ccggcattctactgccattggccgagtatggctctcagtcatcttcatcttcagaatcat 64846033
Query: 170 ggtgctggtggtggctgcagagagtgtgtggggtgatgagaagtcttccttcatctgcaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64846032 ggtgctggtggtggctgcagagagtgtgtggggtgatgagaagtcttccttcatctgcaa 64845973
Query: 230 caccctccagcctggctgcaacagcgtctgctacgaccactttttccccatctcccatgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845972 caccctccagcctggctgcaacagcgtctgctacgaccactttttccccatctcccatgt 64845913
Query: 290 gcgtctgtggtctctgcagctcatcttggtttccaccccagctcttctagtggccatgca 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845912 gcgtctgtggtctctgcagctcatcttggtttccaccccagctcttctagtggccatgca 64845853
Query: 350 cgtggctcaccagcagcacatagaaaagaaaatgctgcgacttgagggccatgccgaccc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845852 cgtggctcaccagcagcacatagaaaagaaaatgctgcgacttgagggccatgccgaccc 64845793
Query: 410 cctccacctggaggaggtgaagaggcacaaggtccacatctcagggacgctgtggtggac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845792 cctccacctggaggaggtgaagaggcacaaggtccacatctcagggacgctgtggtggac 64845733
Query: 470 ctacgtcatcagcgtggtcttccggctgctgttcgaggccgccttcatgtacgtctttta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845732 ctacgtcatcagcgtggtcttccggctgctgttcgaggccgccttcatgtacgtctttta 64845673
Query: 530 tctgctctaccctggctacgccatggtgcggttggtgaagtgtgaggcctacccctgccc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845672 tctgctctaccctggctacgccatggtgcggttggtgaagtgtgaggcctacccctgccc 64845613
Query: 590 caacacagtggactgcttcgtgtcccgccccaccgagaagaccgtcttcaccgtcttcat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845612 caacacagtggactgcttcgtgtcccgccccaccgagaagaccgtcttcaccgtcttcat 64845553
Query: 650 gctggccgcctccggcatctgcatcatcctcaatgtggccgaggtggtgtacctcatctt 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845552 gctggccgcctccggcatctgcatcatcctcaatgtggccgaggtggtgtacctcatctt 64845493
Query: 710 ccgggcctgtgcccgccgagcccagcgccgctccaatccgccttcccgcaagggctcggg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845492 ccgggcctgtgcccgccgagcccagcgccgctccaatccgccttcccgcaagggctcggg 64845433
Query: 770 gggcttcggccaccgcctctcacctgaatacaagcagaacgagatcaacaagctgctgag 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845432 gggcttcggccaccgcctctcacctgaatacaagcagaacgagatcaacaagctgctgag 64845373
Query: 830 cgagcaggacggctccctgaaagacatactgcgccgcagccccggtaccggggctgggct 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845372 cgagcaggacggctccctgaaagacatactgcgccgcagccccggtaccggggctgggct 64845313
Query: 890 ggcggagaagagcgaccgctgctcagcctgctgatgccacagaccaggcaacctcccatc 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845312 ggcggagaagagcgaccgctgctcagcctgctgatgccacagaccaggcaacctcccatc 64845253
Query: 950 ctgcccctccaccctggccccgggctgcccctccttctcccctgccggctggctgagcag 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64845252 ctgcccctccaccctggccccgggctgcccctccttctcccctgccggctggctgagcag 64845193
Query: 1010 gcctctgcctgcgagggatttgctccatcaaaaccctccttccctttcttctagggcctt 1069
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 64845192 gcctctgcctgcgagggatttgctccatcaaaaccctccttcccttcctcctagggcctt 64845133
Query: 1070 ccgcctcaggg 1080
|||||||||||
Sbjct: 64845132 ccgcctcaggg 64845122
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 1 tagtgcagacacgcctgcagacattccctgggaaagggcaagcagcagccaggtg 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64852043 tagtgcagacacgcctgcagacattccctgggaaagggcaagcagcagccaggtg 64851989
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,723,702
Number of extensions: 250
Number of successful extensions: 250
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 2
Length of query: 1080
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1059
Effective length of database: 2,808,413,156
Effective search space: 2974109532204
Effective search space used: 2974109532204
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)