Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001211
(1648 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 261 1e-69
Alignment gi|XP_002696847.1| PREDICTED: IgM [Bos taurus]. 101 2e-21
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 100 3e-21
Alignment gi|XP_002696848.1| PREDICTED: IgM [Bos taurus]. 100 7e-21
Alignment gi|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos... 97 4e-20
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 88 3e-17
Alignment gi|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus]. 83 6e-16
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 72 1e-12
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 72 1e-12
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 58 3e-08
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 261 bits (667), Expect = 1e-69
Identities = 177/482 (36%), Positives = 250/482 (51%), Gaps = 20/482 (4%)
Frame = +1
Query: 79 WVVLFALL--QGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGL 252
W +LF L +GV + +L ESG LV+ +L L+C SG + SS + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKAL 64
Query: 253 EWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGN---- 420
E LA + G TA Y ++K R ++D S++ L + S+ TEDTA YYCA+
Sbjct: 65 ECLACITGGGNTA-YNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCA 123
Query: 421 -HIVYDAIDLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPE-PVT 594
+ ID WG G+ V VSS +T+P ++PL+ D +G V +GCL +FP P++
Sbjct: 124 CSSERNYIDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAG-QVVIGCLVQGFFPSAPLS 182
Query: 595 VTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATTTKVDKR 771
VTWN + V FP+VL S LY++SS +T+PAS +S TC V H +K K
Sbjct: 183 VTWNQNGDSVSVRNFPAVLAGS-LYTMSSQLTLPASLCPKGQSVTCQVQH---LSKASKT 238
Query: 772 VGTKTKPPCPI-------CPACESPGPSVFIFPPKPKDTLMISRTPQVTCVVVDVSQENP 930
V PC I P CE PS+ + PP +D L++ +TC + +
Sbjct: 239 VAV----PCIIQDSSSCCVPNCE---PSLSVQPPALED-LLLGSNASLTCTLSGLKSAE- 289
Query: 931 EVQFSWYVDGVEVHTAQTRPKEEQFNSTYRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAP 1110
F+W G + Q PK + Y V SVLP W +G+ F C V + + +
Sbjct: 290 GASFTWNPTGGKT-AVQGSPKRDSC-GCYSVSSVLPGCADPWNSGQTFSCSVTHPESKSS 347
Query: 1111 ITRIISKAKGQTREPQVYTLPPHAEELSRSK-VSITCLVIGFYPPDIDVEWQRNGQPEPE 1287
+T I K G T PQV+ LPP +EEL+ ++ V++TCLV GF P ++ V W + Q P
Sbjct: 348 LTATIKKDLGNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKEVLVRWLQGNQELPR 407
Query: 1288 GNYRTTPPQQDVD---GTYFLYSKFSVDKASWQGGGIFQCAVMHEALHNHYTQKSISKTP 1458
Y T P + T+ + S VD W+ G F C V HEAL +TQK+I +
Sbjct: 408 EKYLTWGPLPEAGQSVTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLAFTQKTIDRLA 467
Query: 1459 GK 1464
GK
Sbjct: 468 GK 469
>ref|XP_002696847.1| PREDICTED: IgM [Bos taurus].
Length = 193
Score = 101 bits (252), Expect = 2e-21
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 79 WVVLFALL--QGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGL 252
W +LF L +GV + +L ESG LV+ +L L+C SG + S V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSDNSVGWVRQAPGKAL 64
Query: 253 EWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
EWL +YSG +T Y ++K R + ++DNS++ L + S+ TEDTA YYCAR+
Sbjct: 65 EWLGVIYSGGSTG-YNPALKSRLSITKDNSKSQVSLSLSSVTTEDTATYYCARD 117
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 100 bits (250), Expect = 3e-21
Identities = 76/241 (31%), Positives = 113/241 (46%), Gaps = 3/241 (1%)
Frame = +1
Query: 82 VVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWL 261
+ L AL G + L + G + ++C GS V W +Q PG GL+ +
Sbjct: 8 LTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGVNWYQQVPGSGLKTI 67
Query: 262 AGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNHIVYDAI 441
+Y Y V RF+ S+ S NTA L ++SL+ ED A Y+CA G++ V A+
Sbjct: 68 --IYEDK---YRPSGVPDRFSGSK--SGNTATLTINSLQAEDEADYFCAA-GDYSVNTAV 119
Query: 442 DLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTW--NSGA 615
+G G + V PK+ P V P + +G L CL S ++P VTV W +
Sbjct: 120 --FGGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGST 177
Query: 616 LTSGVHTFPSVLQPSGLYSLSSMVTVPASSLSSK-SYTCNVNHPATTTKVDKRVGTKTKP 792
+T V T + Q + Y+ SS +++ +S SK SY+C V H +T TKT
Sbjct: 178 ITRNVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTV-------TKTVK 230
Query: 793 P 795
P
Sbjct: 231 P 231
Score = 60.1 bits (144), Expect = 6e-09
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 1138 GQTREPQVYTL-PPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQ 1314
GQ + P TL PP EEL+ +K ++ CL+ FYP + V W+ +G N TT
Sbjct: 130 GQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTITR-NVETTRAS 188
Query: 1315 QDVDGTYFLYSKFSVDKASWQGGGIFQCAVMHE 1413
+ + Y S S+ + W+ G + C V HE
Sbjct: 189 KQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHE 221
>ref|XP_002696848.1| PREDICTED: IgM [Bos taurus].
Length = 259
Score = 99.8 bits (247), Expect = 7e-21
Identities = 53/133 (39%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Frame = +1
Query: 79 WVVLFALL--QGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGL 252
W +LF L +GV + +L ESG LV+ +L L+C SG + SS V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSSNGVGWVRQAPGKAL 64
Query: 253 EWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGN-HIV 429
EW+ G+ D YY ++K R + ++DNS++ L + S+ EDTA YYCA++ H+
Sbjct: 65 EWVGGI-DNDGDTYYNPALKSRLSITKDNSKSQVSLSVSSVTPEDTATYYCAKDTELHLK 123
Query: 430 YDAIDLWGPGVEV 468
++ W V++
Sbjct: 124 PSSVSCWSVPVQL 136
>ref|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos taurus].
Length = 121
Score = 97.1 bits (240), Expect = 4e-20
Identities = 51/114 (44%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 79 WVVLFALL--QGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGL 252
W +LF L +GV + +L ESG LV+ +L L+C SG + SS V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTISGFSLSSYAVGWVRQAPGKAL 64
Query: 253 EWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
EW+ G+ SG +T ++K R + ++DNS++ L + S+ TEDTA YYCA++
Sbjct: 65 EWVGGISSGGSTC-LNPALKSRLSITKDNSKSQVSLSVSSVTTEDTATYYCAKD 117
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 87.8 bits (216), Expect = 3e-17
Identities = 70/234 (29%), Positives = 101/234 (43%), Gaps = 3/234 (1%)
Frame = +1
Query: 88 LFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAG 267
L L G +L + V G + ++C G + S W +Q PG+ +
Sbjct: 10 LLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH--WYQQKPGQAPVLV-- 65
Query: 268 VYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNHIVYDAIDL 447
+Y+ D A + RF+ S+ S TA L + + ED A YYC DL
Sbjct: 66 IYADDNLA---SGIPDRFSGSK--SDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDL 120
Query: 448 WGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTW--NSGALT 621
+G G V V PK+ P V P + S L CL S ++P VTV W + +T
Sbjct: 121 FGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTIT 180
Query: 622 SGVHTFPSVLQPSGLYSLSSMVTVPASSLSSK-SYTCNVNHPATTTKVDKRVGT 780
V T + Q + Y+ SS +++ S SK SY+C V H +T V K V T
Sbjct: 181 RNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGST--VTKTVKT 232
Score = 62.0 bits (149), Expect = 2e-09
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 1138 GQTREPQVYTL-PPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQ 1314
GQ + P TL PP EELS +K ++ CL+ FYP + V W+ +G N +TT
Sbjct: 131 GQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGSTITR-NVKTTRAS 189
Query: 1315 QDVDGTYFLYSKFSVDKASWQGGGIFQCAVMHE 1413
+ + Y S S+ + W+ G + C V HE
Sbjct: 190 KQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHE 222
>ref|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 226
Score = 83.2 bits (204), Expect = 6e-16
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Frame = +1
Query: 79 WVVLFALLQGVQG---EEKLVESGGGLVQTGGSLRLSCVGSGITFSS-VDVFWVRQAPGK 246
W +L L+ G QG + +L ESG L+++ +L L+C GSG + +S W+RQAPGK
Sbjct: 4 WGLLLCLVTGPQGVLSQVQLQESGPELIKSSQTLSLTCAGSGYSITSDYGRNWIRQAPGK 63
Query: 247 GLEWLAGVY-SGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNH 423
GLE + +Y +GDT YY+ S+K + RD +N LQ+ S+ TEDTA Y AR
Sbjct: 64 GLEQMGCMYYNGDT--YYSPSIKSHTSICRDTPKNQFSLQLSSVPTEDTAMCYLARN--- 118
Query: 424 IVYDAIDLW 450
++D+W
Sbjct: 119 -TALSLDIW 126
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 72.4 bits (176), Expect = 1e-12
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 8/236 (3%)
Frame = +1
Query: 85 VLFALLQGVQGEEKLVESGGGL-VQTGGSLRLSCVGSGITFSSVD--VFWVRQAPGKGLE 255
+L L G +G+ ++ +S L G + ++C S S+D + W +Q PGK +
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQAS----QSIDTKLAWYQQKPGKAPK 65
Query: 256 WLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNHIVYD 435
L +Y+ + + S F D + L + SL+ +D A YYC
Sbjct: 66 LL--IYAIPRSPSWFPSQFSGSGFGADFT-----LTISSLKADDIATYYCLSRNC----- 113
Query: 436 AIDLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTWNSGA 615
++ +G G +V + + P V+ P V++ CL + ++P+ + V W
Sbjct: 114 CVNTFGQGTKVEIKRSD-AEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDG 172
Query: 616 LTSGVHTFPSVL----QPSGLYSLSSMVTVPASSLSS-KSYTCNVNHPATTTKVDK 768
+T F + YSLSS++T+P+S S +YTC V+H + TT + K
Sbjct: 173 VTQSSSNFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVK 228
Score = 63.2 bits (152), Expect = 7e-10
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +1
Query: 1135 KGQTREPQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQ 1314
K EP V+ P E+L VS+ CLV FYP DI+V+W+ +G + N++ +
Sbjct: 127 KRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTD 186
Query: 1315 QD-VDGTYFLYSKFSVDKASWQGGGIFQCAVMHEALHNHYTQKSISK 1452
QD TY L S ++ + +Q + C V H++L KS SK
Sbjct: 187 QDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV-KSFSK 232
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 72.4 bits (176), Expect = 1e-12
Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 8/236 (3%)
Frame = +1
Query: 85 VLFALLQGVQGEEKLVESGGGL-VQTGGSLRLSCVGSGITFSSVD--VFWVRQAPGKGLE 255
+L L G +G+ ++ +S L G + ++C S S+D + W +Q PGK +
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQAS----QSIDTKLAWYQQKPGKAPK 65
Query: 256 WLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNHIVYD 435
L +Y+ + + S F D + L + SL+ +D A YYC
Sbjct: 66 LL--IYAIPRSPSWFPSQFSGSGFGADFT-----LTISSLKADDIATYYCLSRNC----- 113
Query: 436 AIDLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTWNSGA 615
++ +G G +V + + P V+ P V++ CL + ++P+ + V W
Sbjct: 114 CVNTFGQGTKVEIKRSD-AEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDG 172
Query: 616 LTSGVHTFPSVL----QPSGLYSLSSMVTVPASSLSS-KSYTCNVNHPATTTKVDK 768
+T F + YSLSS++T+P+S S +YTC V+H + TT + K
Sbjct: 173 VTQSSSNFQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVK 228
Score = 63.2 bits (152), Expect = 7e-10
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = +1
Query: 1135 KGQTREPQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQ 1314
K EP V+ P E+L VS+ CLV FYP DI+V+W+ +G + N++ +
Sbjct: 127 KRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTD 186
Query: 1315 QD-VDGTYFLYSKFSVDKASWQGGGIFQCAVMHEALHNHYTQKSISK 1452
QD TY L S ++ + +Q + C V H++L KS SK
Sbjct: 187 QDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV-KSFSK 232
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 57.8 bits (138), Expect = 3e-08
Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Frame = +1
Query: 448 WGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTW--NSGALT 621
+G G +V + PK P V P + S L CL S ++P VTV W + +T
Sbjct: 145 FGSGTKVTIPDQPKFPPSVTLFPPSTEELSTYTATLVCLISDFYPGNVTVAWKADGSPVT 204
Query: 622 SGVHTFPSVLQPSGLYSLSSMVTVPASSLSSK-SYTCNVNHPATTTKVDKRVGTKTKPP 795
GV T + Q S Y SS +T+ S K SY+C V H +T TKT P
Sbjct: 205 RGVVTSQASQQSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTV-------TKTVKP 256
Score = 55.1 bits (131), Expect = 2e-07
Identities = 27/87 (31%), Positives = 40/87 (45%)
Frame = +1
Query: 1153 PQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGT 1332
P V PP EELS ++ CL+ FYP ++ V W+ +G P G T+ Q
Sbjct: 161 PSVTLFPPSTEELSTYTATLVCLISDFYPGNVTVAWKADGSPVTRG-VVTSQASQQSSSK 219
Query: 1333 YFLYSKFSVDKASWQGGGIFQCAVMHE 1413
Y S ++ + W+ + C V HE
Sbjct: 220 YVASSYLTLTGSEWKPKSSYSCEVTHE 246
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,117,054
Number of extensions: 2401351
Number of successful extensions: 11433
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 11298
Number of HSP's successfully gapped: 17
Length of query: 549
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 442
Effective length of database: 14,140,958
Effective search space: 6250303436
Effective search space used: 6250303436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001211
(1648 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III regi... 175 1e-43
Alignment gi|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III regi... 174 2e-43
Alignment gi|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III regi... 174 3e-43
Alignment gi|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III regi... 172 9e-43
Alignment gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi... 172 1e-42
Alignment gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi... 170 4e-42
Alignment gi|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III regi... 169 6e-42
Alignment gi|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III regi... 166 5e-41
Alignment gi|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III regi... 166 5e-41
Alignment gi|XP_849385.1| PREDICTED: similar to Ig heavy chain V-III regi... 166 8e-41
>ref|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 315
Score = 175 bits (443), Expect = 1e-43
Identities = 92/158 (58%), Positives = 108/158 (68%)
Frame = +1
Query: 28 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFS 207
SVIR +HR ME L WV L A+LQGVQGE +LVESGG L + GGSLRLSCV SG+TFS
Sbjct: 156 SVIRTQHRQITMESVLGWVFLVAILQGVQGEVQLVESGGDLAKPGGSLRLSCVASGLTFS 215
Query: 208 SVDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTED 387
S + WVRQAPGKGL+W+ + ++ YY D+VKGRFT SRDN++NT YLQM+SLR ED
Sbjct: 216 SYSMSWVRQAPGKGLQWVTAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAED 275
Query: 388 TARYYCAREGNHIVYDAIDLWGPGVEVVVSSAPKTAPL 501
TA YYCA+E I G SS P APL
Sbjct: 276 TAVYYCAQEQFQIEVMGRFPVRDGASSPWSSFPPGAPL 313
>ref|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 239
Score = 174 bits (441), Expect = 2e-43
Identities = 84/129 (65%), Positives = 103/129 (79%)
Frame = +1
Query: 28 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFS 207
S I EHR M L+WV L A+++GVQGE +LVESGG LV+ GGSLRLSCV SG TFS
Sbjct: 57 SGIWTEHRQLTMTSVLSWVFLAAIVKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 116
Query: 208 SVDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTED 387
+ +++WVRQAPGKGLEW+A +Y +T YYA++VKGRFT SRDN++N AYLQM+SLR ED
Sbjct: 117 NYEMYWVRQAPGKGLEWVARIYESGSTTYYAEAVKGRFTISRDNAKNMAYLQMNSLRAED 176
Query: 388 TARYYCARE 414
TA YYCA+E
Sbjct: 177 TAVYYCAQE 185
>ref|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 186
Score = 174 bits (440), Expect = 3e-43
Identities = 88/143 (61%), Positives = 105/143 (73%)
Frame = +1
Query: 31 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSS 210
VIR +HR ME L+WV L A+LQGVQGE +LVESGG LV+ GSLRLSCV SG TFSS
Sbjct: 22 VIRTQHRQITMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPAGSLRLSCVASGFTFSS 81
Query: 211 VDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDT 390
+ WVRQAP KGL+ +AG+ SG ++ YY D+VKGRFT SRDN++NT YLQM+SLR EDT
Sbjct: 82 YSMSWVRQAPEKGLQLVAGINSGGSSTYYTDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 141
Query: 391 ARYYCAREGNHIVYDAIDLWGPG 459
A YYCA G+ + GPG
Sbjct: 142 AMYYCAEAGS----GQVSCQGPG 160
>ref|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 250
Score = 172 bits (436), Expect = 9e-43
Identities = 82/128 (64%), Positives = 101/128 (78%)
Frame = +1
Query: 31 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSS 210
+IR + R ME L+WV L A+LQGVQGE +LVESGG LV+ GGSLRLSCV SG TFS+
Sbjct: 108 LIRTQQRQTTMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSN 167
Query: 211 VDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDT 390
D+ WVRQAPGKGL+W+A + ++ YY D+VKGRFT SRDN++NT YLQM+SLR EDT
Sbjct: 168 YDMSWVRQAPGKGLQWVAAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAEDT 227
Query: 391 ARYYCARE 414
A YYCA++
Sbjct: 228 AVYYCAKD 235
Score = 117 bits (294), Expect(2) = 9e-27
Identities = 55/92 (59%), Positives = 68/92 (73%)
Frame = +1
Query: 139 GGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGR 318
G LV+ GGSLRLSCV SG TFS + WV QAPGKGL+W+A + S ++ YY D+VKGR
Sbjct: 10 GEDLVKPGGSLRLSCVTSGFTFSRYAMSWVGQAPGKGLQWVAAISSSGSSTYYVDAVKGR 69
Query: 319 FTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
FT S DN++N YLQM+SLR ED A YYC ++
Sbjct: 70 FTISIDNAKNMVYLQMNSLRAEDIAVYYCGKD 101
Score = 22.3 bits (46), Expect(2) = 9e-27
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 116 VRRSWWSLEEAWCRLGG 166
V+ SWWSL E + GG
Sbjct: 2 VKCSWWSLGEDLVKPGG 18
>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 162
Score = 172 bits (435), Expect = 1e-42
Identities = 83/127 (65%), Positives = 101/127 (79%)
Frame = +1
Query: 34 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSV 213
IR E+R M+ L WV L A+L+GVQGE +LVESGG LV+ GGSLRLSCV SG TFSS
Sbjct: 4 IRTEYRQLTMKLVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSY 63
Query: 214 DVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTA 393
++ WVRQAPGKGL+W+A +Y ++ YAD+VKGRFT SRDN++NT YLQM+SLR EDTA
Sbjct: 64 NMGWVRQAPGKGLQWVAWIYDSGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 123
Query: 394 RYYCARE 414
YYCAR+
Sbjct: 124 VYYCARD 130
>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 142
Score = 170 bits (430), Expect = 4e-42
Identities = 84/129 (65%), Positives = 103/129 (79%)
Frame = +1
Query: 28 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFS 207
S IR E+R ME + WV L A+L+GVQGE +LVESGG LV+ GGSLRLSCV SG TFS
Sbjct: 3 SGIRVENRRLNMESFVGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 62
Query: 208 SVDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTED 387
S + WVRQAPGKGL+W+A + SG ++ YYAD+VKGRFT SRDN++NT YLQM+SLR+ED
Sbjct: 63 SYAMSWVRQAPGKGLQWVAYINSGGSSTYYADAVKGRFTISRDNARNTLYLQMNSLRSED 122
Query: 388 TARYYCARE 414
TA YYC ++
Sbjct: 123 TAVYYCPKD 131
>ref|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 267
Score = 169 bits (429), Expect = 6e-42
Identities = 82/123 (66%), Positives = 98/123 (79%)
Frame = +1
Query: 43 EHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVF 222
EHR ME L+WV L +L+GVQGE +LVESGG LV+ GGSLRLSCV SG TFSS +
Sbjct: 104 EHRQRTMESALSWVFLVTILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYHMS 163
Query: 223 WVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYY 402
WVRQAPGKGL+W+A + SG ++ YAD+VKGRFT SRDN++NT YLQM+SLR EDTA YY
Sbjct: 164 WVRQAPGKGLQWVAYINSGGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYY 223
Query: 403 CAR 411
CA+
Sbjct: 224 CAK 226
>ref|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 350
Score = 166 bits (421), Expect = 5e-41
Identities = 92/193 (47%), Positives = 119/193 (61%), Gaps = 2/193 (1%)
Frame = +1
Query: 31 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSS 210
+IR + + +ME L WV L A+L+GVQGE +LVE GG LV+ GGSLRLSCV SG TFSS
Sbjct: 132 LIRTQRKQTSMESVLGWVFLVAILKGVQGELQLVELGGDLVKPGGSLRLSCVASGFTFSS 191
Query: 211 VDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDT 390
+ WV QAPGKGL+W+A + S ++ Y+ D+VKGRFT SRDN++NT YLQM+SLR EDT
Sbjct: 192 YAMSWVCQAPGKGLQWVAAISSSGSSTYHVDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 251
Query: 391 ARYYCAR--EGNHIVYDAIDLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCL 564
A YYCA G H V + L G ++V PCG + L C+
Sbjct: 252 AVYYCADTVRGPHCVQGEVQLVESGGDLV--------------KPCGL------LRLSCV 291
Query: 565 ASSYFPEPVTVTW 603
AS + ++W
Sbjct: 292 ASGFTFSSYIMSW 304
Score = 145 bits (366), Expect = 1e-34
Identities = 73/116 (62%), Positives = 87/116 (75%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
ME L+ V L A+L+GVQGE LVESGG LV+ GSLR SCV SG TFSS + WVRQAP
Sbjct: 1 MESALHRVSLVAILKGVQGEVPLVESGGELVKPEGSLRFSCVASGFTFSSYWISWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCA 408
GKGL W++ + +T Y+AD+VKGRFT SRDN++NT YLQM+SLR E T YYCA
Sbjct: 61 GKGLHWVSVINKDGSTTYHADAVKGRFTISRDNAKNTLYLQMNSLRAEGTTVYYCA 116
Score = 92.8 bits (229), Expect(2) = 2e-19
Identities = 46/72 (63%), Positives = 55/72 (76%)
Frame = +1
Query: 109 VQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGVYSGDTT 288
VQGE +LVESGG LV+ G LRLSCV SG TFSS + WVRQAPGK L+W+A + SG ++
Sbjct: 266 VQGEVQLVESGGDLVKPCGLLRLSCVASGFTFSSYIMSWVRQAPGKWLQWVAYINSGGSS 325
Query: 289 AYYADSVKGRFT 324
Y D+VKGRFT
Sbjct: 326 TRYTDAVKGRFT 337
Score = 22.7 bits (47), Expect(2) = 2e-19
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 326 SPETTPKTRPIC 361
SPETTP+T IC
Sbjct: 338 SPETTPRTCCIC 349
>ref|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 244
Score = 166 bits (421), Expect = 5e-41
Identities = 81/124 (65%), Positives = 98/124 (79%)
Frame = +1
Query: 37 RKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVD 216
+ EH+ ME L WV L A+L+GVQ E +LVESGG LV+ GSLRLSCV SG TFSS D
Sbjct: 70 KTEHKQLTMESVLCWVFLVAILKGVQSEVQLVESGGDLVKPVGSLRLSCVASGFTFSSYD 129
Query: 217 VFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTAR 396
+ WVRQAPGKGL+W+A + SG ++ YYAD+VKGRFT SRDN++NT YLQM+SLR EDTA
Sbjct: 130 MNWVRQAPGKGLQWVAYISSGGSSTYYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAM 189
Query: 397 YYCA 408
YYC+
Sbjct: 190 YYCS 193
>ref|XP_849385.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 174
Score = 166 bits (419), Expect = 8e-41
Identities = 81/129 (62%), Positives = 100/129 (77%)
Frame = +1
Query: 28 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFS 207
+V+R +HR ME L WV L A+L+GVQGE +LVESGG LV+ GGSLRLSCV SG TFS
Sbjct: 14 AVLRTQHRQLTMESVLFWVFLVAILKGVQGEVQLVESGGNLVKPGGSLRLSCVASGFTFS 73
Query: 208 SVDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTED 387
S + WVRQAPGK L+W+AG+ S ++ YY +VKGRFT SRDN++NT YLQM+SLR ED
Sbjct: 74 SYYMDWVRQAPGKRLQWVAGISSDGSSTYYPQAVKGRFTISRDNAKNTLYLQMNSLRAED 133
Query: 388 TARYYCARE 414
+A YYCA +
Sbjct: 134 SAVYYCAMD 142
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,846,312
Number of extensions: 2396978
Number of successful extensions: 11634
Number of sequences better than 1.0e-05: 161
Number of HSP's gapped: 11342
Number of HSP's successfully gapped: 260
Length of query: 549
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 441
Effective length of database: 15,274,216
Effective search space: 6735929256
Effective search space used: 6735929256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001211
(1648 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-... 166 6e-41
Alignment gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941... 164 2e-40
Alignment gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-... 164 2e-40
Alignment gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-... 164 3e-40
Alignment gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-... 162 7e-40
Alignment gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-... 159 6e-39
Alignment gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917... 159 7e-39
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 158 2e-38
Alignment gi|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797... 154 2e-37
Alignment gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-... 145 8e-35
>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 166 bits (420), Expect = 6e-41
Identities = 82/118 (69%), Positives = 97/118 (82%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L A+L+GVQ E +LV+SGGGLVQ GGSLRLSC GSG TFSS + WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVQPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLEW++ + +G T YYADSVKGRFT SRDN++N+ YLQM+SLR ED A YYCAR+
Sbjct: 61 GKGLEWVSAIGTGGGT-YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
Length = 297
Score = 164 bits (415), Expect = 2e-40
Identities = 81/118 (68%), Positives = 96/118 (81%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L A+L+GVQ E +LV+SGGGLV GGSLRLSC GSG TFSS + WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLEW++ + +G T YYADSVKGRFT SRDN++N+ YLQM+SLR ED A YYCAR+
Sbjct: 61 GKGLEWVSAIGTGGGT-YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 164 bits (415), Expect = 2e-40
Identities = 81/118 (68%), Positives = 96/118 (81%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L A+L+GVQ E +LV+SGGGLV GGSLRLSC GSG TFSS + WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLEW++ + +G T YYADSVKGRFT SRDN++N+ YLQM+SLR ED A YYCAR+
Sbjct: 61 GKGLEWVSAIGTGGGT-YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 173
Score = 164 bits (414), Expect = 3e-40
Identities = 83/124 (66%), Positives = 96/124 (77%), Gaps = 3/124 (2%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L ALL+GVQ + +LVESGGG+VQ G SLRLSC SG TFSS + WVRQAP
Sbjct: 1 MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE-- 414
GKGLEW+A + + YYADSVKGRFT SRDNS+NT YLQM+SLR DTA YYCAR+
Sbjct: 61 GKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYCARDTV 120
Query: 415 -GNH 423
G+H
Sbjct: 121 RGSH 124
>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 231
Score = 162 bits (411), Expect = 7e-40
Identities = 80/118 (67%), Positives = 94/118 (79%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV+L A+L+ VQ E +LVESGGGLVQ GGSLRLSC SG TFSS + WVRQAP
Sbjct: 1 MEFWLSWVLLVAILKDVQCEVQLVESGGGLVQPGGSLRLSCSASGFTFSSYAMHWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLE+++ + S + YYADSVKGRFT SRDNS+NT YLQM SLR EDTA YYC ++
Sbjct: 61 GKGLEYVSAISSNGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCVKD 118
>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 186
Score = 159 bits (403), Expect = 6e-39
Identities = 76/118 (64%), Positives = 94/118 (79%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L A+++GVQ + +LVESGGGLV+ GGSLRLSC SG TFS + W+RQAP
Sbjct: 1 MEFGLSWVFLVAIIKGVQCQVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLEW++ + S + YADSVKGRFT SRDN++N+ YLQM+SLR EDTA YYCAR+
Sbjct: 61 GKGLEWVSYISSSSSYTNYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARD 118
>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
Length = 295
Score = 159 bits (402), Expect = 7e-39
Identities = 79/126 (62%), Positives = 96/126 (76%)
Frame = +1
Query: 34 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSV 213
+ K + E L+W+ L A+L+GVQ E +LVESGGGLV+ GGSLRLSC SG TFS
Sbjct: 13 LHKSEKRTTKESWLSWLFLVAILKGVQCEVQLVESGGGLVKPGGSLRLSCAASGFTFSDY 72
Query: 214 DVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTA 393
+ WVRQAPGKGLEW++ + S +T YYADSVKGRFT SRDN++N+ YLQM+SLR EDTA
Sbjct: 73 YMNWVRQAPGKGLEWVSSI-SSSSTIYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTA 131
Query: 394 RYYCAR 411
YYCAR
Sbjct: 132 VYYCAR 137
Score = 80.5 bits (197), Expect = 4e-15
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Frame = +1
Query: 109 VQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSS--VDVFWVRQAPGKGLEWLAGVYSGD 282
V + L ESG LV+ +L L+C SG + S+ + V W+RQ PGK LEWLA + D
Sbjct: 164 VLSQVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMRVSWIRQPPGKALEWLARI-DWD 222
Query: 283 TTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAR 411
+Y+ S+K R T S+D S+N L M ++ DTA YYCAR
Sbjct: 223 DDKFYSTSLKTRLTISKDTSKNQVVLTMTNMDPVDTATYYCAR 265
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 158 bits (399), Expect = 2e-38
Identities = 77/118 (65%), Positives = 92/118 (77%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L A+L+GVQ E +LVESGG +VQ GGSLRLSC SG TF + WVRQAP
Sbjct: 1 MEFGLSWVFLVAILKGVQCEVQLVESGGVVVQPGGSLRLSCAASGFTFDDYAMHWVRQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLEW++ + + YYADSVKGRFT SRDNS+N+ YLQM+SLR EDTA YYCA++
Sbjct: 61 GKGLEWVSLISWDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYCAKD 118
Score = 79.0 bits (193), Expect = 1e-14
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +1
Query: 190 SGITFSSVDVFWVRQAPGKGLEWLAGVYS--GDTTAYYADSVKGRFTFSRDNSQNTAYLQ 363
SG TFS + W+RQA GKGLEW+ + + T A SVKGRFT SRD+S+NT Y+Q
Sbjct: 134 SGFTFSDFWMHWIRQASGKGLEWVGRIRTKRNSYTTECAASVKGRFTISRDDSKNTLYMQ 193
Query: 364 MHSLRTEDTARYYCAREG 417
M++L+T+ TA YY +G
Sbjct: 194 MNTLKTKYTAIYYSPGQG 211
Score = 54.7 bits (130), Expect = 2e-07
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = +1
Query: 235 APGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
+PG+GLEW+ + + Y GRF FS D S + AYLQ+ SL+ EDTA Y R+
Sbjct: 207 SPGQGLEWMGWIITYTGNPMYTHGFTGRFVFSMDTSVSMAYLQISSLKAEDTAVYDSMRD 266
>ref|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].
Length = 309
Score = 154 bits (389), Expect = 2e-37
Identities = 83/141 (58%), Positives = 100/141 (70%), Gaps = 4/141 (2%)
Frame = +1
Query: 4 RSPAPGS----RSVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSL 171
RSP+ G SVIR EH EF L+WV L A+L+ VQ E++LVESGGGLVQ GGSL
Sbjct: 108 RSPSLGIPKCLHSVIRTEHTGLTREFVLSWVFLVAILKCVQCEDQLVESGGGLVQPGGSL 167
Query: 172 RLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNT 351
R SC SG FSS + WVR+APGKG EW++ + +G T YYADSV GRFT SRDN++ +
Sbjct: 168 RPSCAASGFAFSSYVLHWVRRAPGKGPEWVSAIGTGGDT-YYADSVMGRFTISRDNAKKS 226
Query: 352 AYLQMHSLRTEDTARYYCARE 414
YLQM+SL ED A YYCAR+
Sbjct: 227 LYLQMNSLIAEDMAVYYCARD 247
>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 148
Score = 145 bits (367), Expect = 8e-35
Identities = 73/118 (61%), Positives = 86/118 (72%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEF L+WV L A+LQGV E +LVESG GL Q GG L+LS SG T S + W+ QAP
Sbjct: 1 MEFELSWVFLVAILQGVHCEVQLVESGRGLAQPGGYLKLSGAASGFTVGSWYMSWIHQAP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
GKGLEW++ + S + YADSVKGRFT S DNS+NT YLQM+SLR EDTA YYCAR+
Sbjct: 61 GKGLEWVSYISSSGCSTNYADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYCARD 118
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,141,390
Number of extensions: 2342186
Number of successful extensions: 11431
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 11305
Number of HSP's successfully gapped: 26
Length of query: 549
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 441
Effective length of database: 14,737,052
Effective search space: 6499039932
Effective search space used: 6499039932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001211
(1648 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 141 1e-33
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 141 1e-33
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 138 1e-32
Alignment gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361... 107 4e-23
Alignment gi|XP_923669.1| PREDICTED: putative V-set and immunoglobulin do... 100 3e-21
Alignment gi|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002... 99 1e-20
Alignment gi|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chai... 98 2e-20
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 86 1e-16
Alignment gi|NP_001171117.1| tyrosine-protein phosphatase non-receptor ty... 55 1e-07
Alignment gi|NP_031573.2| tyrosine-protein phosphatase non-receptor type ... 55 1e-07
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 141 bits (356), Expect = 1e-33
Identities = 107/334 (32%), Positives = 164/334 (49%), Gaps = 11/334 (3%)
Frame = +1
Query: 496 PLVYPLAPCGRDTSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLYS 672
P +YPL +S P V +GCL YFP + VTW FP L G Y+
Sbjct: 16 PTIYPLTLPPALSSDP-VIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 673 LSSMVTVPASSL-SSKSYTCNVNHPATTTK-VDKRVGTKTKPPCPICPACESPGPSVFIF 846
+SS +T+PA +S C+V H + + +D T PP P+C+ PS+ +
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQ---PSLSLQ 131
Query: 847 PPKPKDTLMISRTPQVTCVVVDVSQENPE-VQFSWYVDGVEVHTAQTRPKEEQFNST--- 1014
P +D L++ +TC + + NPE F+W E T + +++ ++
Sbjct: 132 RPALED-LLLGSDASITCTLNGL--RNPEGAVFTW-----EPSTGKDAVQKKAVQNSCGC 183
Query: 1015 YRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTREPQVYTLPPHAEELS 1194
Y V SVLP + W +G FKC V + + +T I+K T PQV+ LPP +EEL+
Sbjct: 184 YSVSSVLPGCAERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELA 242
Query: 1195 RSKV-SITCLVIGFYPPDIDVEWQR-NGQPEPEGNYRTTPPQQDVDG--TYFLYSKFSVD 1362
+++ S+TCLV F P ++ V W N + PE P ++ +G TY + S V
Sbjct: 243 LNELLSLTCLVRAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVS 302
Query: 1363 KASWQGGGIFQCAVMHEALHNHYTQKSISKTPGK 1464
+W+ G + C V HEAL ++TQK+I + GK
Sbjct: 303 AETWKQGDQYSCMVGHEALPMNFTQKTIDRLSGK 336
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 141 bits (356), Expect = 1e-33
Identities = 107/334 (32%), Positives = 164/334 (49%), Gaps = 11/334 (3%)
Frame = +1
Query: 496 PLVYPLAPCGRDTSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLYS 672
P +YPL +S P V +GCL YFP + VTW FP L G Y+
Sbjct: 75 PTIYPLTLPPALSSDP-VIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 673 LSSMVTVPASSL-SSKSYTCNVNHPATTTK-VDKRVGTKTKPPCPICPACESPGPSVFIF 846
+SS +T+PA +S C+V H + + +D T PP P+C+ PS+ +
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQ---PSLSLQ 190
Query: 847 PPKPKDTLMISRTPQVTCVVVDVSQENPE-VQFSWYVDGVEVHTAQTRPKEEQFNST--- 1014
P +D L++ +TC + + NPE F+W E T + +++ ++
Sbjct: 191 RPALED-LLLGSDASITCTLNGL--RNPEGAVFTW-----EPSTGKDAVQKKAVQNSCGC 242
Query: 1015 YRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTREPQVYTLPPHAEELS 1194
Y V SVLP + W +G FKC V + + +T I+K T PQV+ LPP +EEL+
Sbjct: 243 YSVSSVLPGCAERWNSGASFKCTVTHPE-SGTLTGTIAKVTVNTFPPQVHLLPPPSEELA 301
Query: 1195 RSKV-SITCLVIGFYPPDIDVEWQR-NGQPEPEGNYRTTPPQQDVDG--TYFLYSKFSVD 1362
+++ S+TCLV F P ++ V W N + PE P ++ +G TY + S V
Sbjct: 302 LNELLSLTCLVRAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVS 361
Query: 1363 KASWQGGGIFQCAVMHEALHNHYTQKSISKTPGK 1464
+W+ G + C V HEAL ++TQK+I + GK
Sbjct: 362 AETWKQGDQYSCMVGHEALPMNFTQKTIDRLSGK 395
Score = 122 bits (307), Expect = 6e-28
Identities = 117/403 (29%), Positives = 167/403 (41%), Gaps = 50/403 (12%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
M+ LNWV L LL G+Q E KLVESGGGLVQ GGSLRLSC SG TFS + WVRQ P
Sbjct: 1 MKLWLNWVFLLTLLHGIQCEVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPP 60
Query: 241 GKGLEWLAGVYSGDTTAY---------------------YADSVKGRFTFSRDNSQNT-- 351
GK LEW+A + + T Y Y S T+ + T
Sbjct: 61 GKRLEWIAAKSARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV 120
Query: 352 ------AYLQMHSLRTEDTARYYCAREGNHIVYDAIDLWGPGVEVVVSSAPKTAPLVYPL 513
A +++ ++ T EG + P E+ V+ + T P +
Sbjct: 121 NFPPALASGGRYTMSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSGPTPPPPITI 180
Query: 514 APCGRDTS-----------GPNVALGC-LASSYFPEPVTVTWNSGALTSGVHTFPSVLQP 657
C S G + ++ C L PE TW V +V
Sbjct: 181 PSCQPSLSLQRPALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQK-KAVQNS 239
Query: 658 SGLYSLSSMVTVPASSLSS-KSYTCNVNHP--ATTTKVDKRVGTKTKPPCPICPACESPG 828
G YS+SS++ A +S S+ C V HP T T +V T P
Sbjct: 240 CGCYSVSSVLPGCAERWNSGASFKCTVTHPESGTLTGTIAKVTVNTFP------------ 287
Query: 829 PSVFIFPPKPKDTLMISRTPQVTCVVVDVSQENPEVQFSWYVDGVEVHTAQT----RPKE 996
P V + PP P + L ++ +TC+ V NP+ ++ G E + ++ P +
Sbjct: 288 PQVHLLPP-PSEELALNELLSLTCL---VRAFNPKEVLVRWLHGNEELSPESYLVFEPLK 343
Query: 997 E--QFNSTYRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITR 1119
E + +TY V SVL + + W G ++ C V ++ LP T+
Sbjct: 344 EPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEALPMNFTQ 386
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 138 bits (347), Expect = 1e-32
Identities = 108/334 (32%), Positives = 160/334 (47%), Gaps = 11/334 (3%)
Frame = +1
Query: 496 PLVYPLAPCGRDTSGPNVALGCLASSYFPE-PVTVTWNSGALTSGVHTFPSVLQPSGLYS 672
P +YPL R S V +GCL YFP + VTW FP L G Y+
Sbjct: 11 PTIYPLT-LPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 673 LSSMVTVPASSL-SSKSYTCNVNHPATTTKVDKRVGTKTK-PPCPICPACESPGPSVFIF 846
+SS +T+PA +S C+V H + + + K PP P P S PS+ +
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQ---ELNVKCSGPPPPTTPPPPSCQPSLSLQ 126
Query: 847 PPKPKDTLMISRTPQVTCVVVDVSQENPE-VQFSWYVDGVEVHTAQTRPKEEQFNST--- 1014
P +D L++ +TC + + NPE F+W E T + +++ ++
Sbjct: 127 RPALED-LLLGSDASITCTLNGL--RNPEGAVFTW-----EPSTGKDAVQKKAVQNSCGC 178
Query: 1015 YRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTREPQVYTLPPHAEELS 1194
Y V SVLP + W +G FKC V + + +T I+K T PQV+ LPP +EEL+
Sbjct: 179 YSVSSVLPGCAERWNSGASFKCTVTHPESDT-LTGTIAKITVNTFPPQVHLLPPPSEELA 237
Query: 1195 RSK-VSITCLVIGFYPPDIDVEWQR-NGQPEPEGNYRTTPPQQDVDG--TYFLYSKFSVD 1362
++ VS+TCLV F P ++ V W N + PE P ++ +G TY + S V
Sbjct: 238 LNELVSLTCLVRAFNPKEVLVRWLHGNEELSPESYLVFEPLKEPGEGATTYLVTSVLRVS 297
Query: 1363 KASWQGGGIFQCAVMHEALHNHYTQKSISKTPGK 1464
W+ G + C V HEAL ++TQK+I + GK
Sbjct: 298 AEIWKQGDQYSCMVGHEALPMNFTQKTIDRLSGK 331
>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
Length = 411
Score = 107 bits (266), Expect = 4e-23
Identities = 60/140 (42%), Positives = 84/140 (60%), Gaps = 10/140 (7%)
Frame = +1
Query: 97 LLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGVYS 276
LL G+ + +L ESG GLV SL ++C SG + + V WVRQ PGKGLEWL G+
Sbjct: 253 LLPGILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWL-GMIW 311
Query: 277 GDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNH----------I 426
GD + Y ++K R + S+DNS++ +L+M+SL+T+DTARYYCAR+ +
Sbjct: 312 GDGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCARDTVREVQCAQCEVKL 371
Query: 427 VYDAIDLWGPGVEVVVSSAP 486
V L PG V++S AP
Sbjct: 372 VKSKGGLVQPGRSVILSCAP 391
Score = 78.6 bits (192), Expect = 1e-14
Identities = 40/94 (42%), Positives = 59/94 (62%)
Frame = +1
Query: 109 VQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGVYSGDTT 288
V + ++ ESG LVQ +L L+C SG + SS V W R+ P KGLEWL G++SG +
Sbjct: 17 VLSQVQMKESGPDLVQPSQTLSLTCTVSGFSLSSYGVHWFRKPPRKGLEWLGGIWSGG-S 75
Query: 289 AYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDT 390
YY ++ R + SRD S++ + +M SL++EDT
Sbjct: 76 IYYNPALSSRLSVSRDISKSQVFFKMSSLQSEDT 109
>ref|XP_923669.1| PREDICTED: putative V-set and immunoglobulin domain-containing
protein 6-like [Mus musculus].
Length = 208
Score = 100 bits (249), Expect = 3e-21
Identities = 50/112 (44%), Positives = 75/112 (66%)
Frame = +1
Query: 79 WVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEW 258
++ L A V + +L ESG GLV SL ++C SG + +S V WVRQ PGKGLEW
Sbjct: 7 FLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEW 66
Query: 259 LAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE 414
L +++G +T Y + ++ R + S+DNS++ +L+M+SL+T+DTA YYCAR+
Sbjct: 67 LGVIWAGGSTNYNS-ALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCARD 117
>ref|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002 [Mus musculus].
Length = 302
Score = 98.6 bits (244), Expect = 1e-20
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Frame = +1
Query: 76 NWVVLFAL--LQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKG 249
+W+ LF L GV E +L +SG L++ G S+++SC SG TF+ + WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLQQSGPELLKPGASVKISCKASGYTFTDYTMHWVKQSHGKS 63
Query: 250 LEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNHIV 429
LEW+ G+ Y + K + T + D S +TAY+++ SL +ED+A YYCAR H V
Sbjct: 64 LEWIGGINPNYGGTSYNEKFKDKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR---HSV 120
Query: 430 YDAIDLWGPGVEVVVSSA 483
+ L G E+V A
Sbjct: 121 NSEVQLQQSGPELVKPGA 138
Score = 65.5 bits (158), Expect = 1e-10
Identities = 38/104 (36%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
Frame = +1
Query: 106 GVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGV--YSG 279
GV E L +S +V+ G S+++SC SG +F+ + WV+Q+ GK L+ + + Y+G
Sbjct: 179 GVHSEVHLQQSLPKVVKAGPSVKISCKASGYSFTGYYMHWVKQSHGKILQRVEYINPYNG 238
Query: 280 DTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAR 411
T Y + K + T + D S +TAY+ + SL +ED+ Y CAR
Sbjct: 239 GTG--YIEKFKDKATLTADKSFSTAYMHLSSLTSEDSEVYSCAR 280
>ref|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].
Length = 124
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/114 (41%), Positives = 72/114 (63%), Gaps = 2/114 (1%)
Frame = +1
Query: 76 NWVVLFAL--LQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKG 249
+W+ LF L GV E +L +SG LV+ G S+++SC SG TF++ + WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLHQSGPELVKPGASVKMSCKASGYTFTNYYMHWVKQSHGKS 63
Query: 250 LEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAR 411
+EW+ +Y + Y KG+ T + D S +TAY+++ SL +ED+A YYCAR
Sbjct: 64 IEWIGYIYPNNGDTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 85.5 bits (210), Expect = 1e-16
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +1
Query: 97 LLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAGVYS 276
LL G + +L +SG LV+ G S+++SC SG TF+S + WV+Q PG+GLEW+ +
Sbjct: 4 LLAGFNSQVQLQQSGAELVRPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIDP 63
Query: 277 GDTTAYYADSVK---GRFTFSRDNSQNTAYLQMHSLRTEDTARYYC 405
D+ Y K + T + D S + AY+Q SL +ED+ YYC
Sbjct: 64 SDSETIYNQKFKDSRDKATLTVDKSSSIAYMQFSSLTSEDSVVYYC 109
>ref|NP_001171117.1| tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1
[Mus musculus].
Length = 509
Score = 55.5 bits (132), Expect = 1e-07
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 3/192 (1%)
Frame = +1
Query: 847 PPK---PKDTLMISRTPQVTCVVVDVSQENPEVQFSWYVDGVEVHTAQTRPKEEQFNSTY 1017
PP+ P D + + TC S N + W+ DG E+H +T N +Y
Sbjct: 151 PPEVSGPADRGIPDQKVNFTCKSHGFSPRN--ITLKWFKDGQELHPLETTVNPSGKNVSY 208
Query: 1018 RVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTREPQVYTLPPHAEELSR 1197
+ S + + + C+V + L R I+ R + + S
Sbjct: 209 NISSTVRVVLNSMDVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPT-SM 267
Query: 1198 SKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGTYFLYSKFSVDKASWQ 1377
++V++TC FYP D+ + W NG + ++ DGTY S F V+ ++ +
Sbjct: 268 NQVNLTCRAERFYPEDLQLIWLENGNVSRNDTPKNL--TKNTDGTYNYTSLFLVNSSAHR 325
Query: 1378 GGGIFQCAVMHE 1413
+F C V H+
Sbjct: 326 EDVVFTCQVKHD 337
>ref|NP_031573.2| tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1
[Mus musculus].
Length = 509
Score = 55.5 bits (132), Expect = 1e-07
Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 3/192 (1%)
Frame = +1
Query: 847 PPK---PKDTLMISRTPQVTCVVVDVSQENPEVQFSWYVDGVEVHTAQTRPKEEQFNSTY 1017
PP+ P D + + TC S N + W+ DG E+H +T N +Y
Sbjct: 151 PPEVSGPADRGIPDQKVNFTCKSHGFSPRN--ITLKWFKDGQELHPLETTVNPSGKNVSY 208
Query: 1018 RVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTREPQVYTLPPHAEELSR 1197
+ S + + + C+V + L R I+ R + + S
Sbjct: 209 NISSTVRVVLNSMDVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPT-SM 267
Query: 1198 SKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGTYFLYSKFSVDKASWQ 1377
++V++TC FYP D+ + W NG + ++ DGTY S F V+ ++ +
Sbjct: 268 NQVNLTCRAERFYPEDLQLIWLENGNVSRNDTPKNL--TKNTDGTYNYTSLFLVNSSAHR 325
Query: 1378 GGGIFQCAVMHE 1413
+F C V H+
Sbjct: 326 EDVVFTCQVKHD 337
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,178,137
Number of extensions: 1938635
Number of successful extensions: 9390
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 9220
Number of HSP's successfully gapped: 18
Length of query: 549
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 443
Effective length of database: 12,433,743
Effective search space: 5508148149
Effective search space used: 5508148149
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001211
(1648 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 828 0.0
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 99 9e-21
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 87 3e-17
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 65 1e-10
Alignment gi|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-... 54 3e-07
Alignment gi|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-2... 51 2e-06
Alignment gi|NP_001107166.1| SLA class II histocompatibility antigen, DQ ... 50 3e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 828 bits (2139), Expect = 0.0
Identities = 407/475 (85%), Positives = 427/475 (89%), Gaps = 7/475 (1%)
Frame = +1
Query: 61 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAP 240
MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQ GGSL+LSCV SG FS V WVR P
Sbjct: 1 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLKLSCVASGFIFSKYIVNWVRLVP 60
Query: 241 GKGLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCARE-- 414
GKGLEWLA ++S +T +YADSVKGRFT SRDNSQNTAYLQM+SLRTEDTA YYCARE
Sbjct: 61 GKGLEWLASIWSTGST-HYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVC 119
Query: 415 -----GNHIVYDAIDLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYF 579
G Y +DLWGPGVEVVVSSAPKTAP VYPLAPCGRDTSGPNVALGCLASSYF
Sbjct: 120 FRYNTGCWDGYYGMDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYF 179
Query: 580 PEPVTVTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSLSSKSYTCNVNHPATTTK 759
PEPVT+TWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSLSSKSYTCNVNHPATTTK
Sbjct: 180 PEPVTMTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSLSSKSYTCNVNHPATTTK 239
Query: 760 VDKRVGTKTKPPCPICPACESPGPSVFIFPPKPKDTLMISRTPQVTCVVVDVSQENPEVQ 939
VDKRVGTKTKPPCPICP CE GPSVFIFPPKPKDTLMIS+TP+VTCVVVDVS+E+ EVQ
Sbjct: 240 VDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQ 299
Query: 940 FSWYVDGVEVHTAQTRPKEEQFNSTYRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITR 1119
FSWYVDGVEVHTA+TRPKEEQFNSTYRVVSVLPIQHQDWL GKEFKCKVNN DLPAPITR
Sbjct: 300 FSWYVDGVEVHTAETRPKEEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITR 359
Query: 1120 IISKAKGQTREPQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYR 1299
ISKA GQ+REPQVYTLPP AEELSRSKV++TCLVIGFYPPDI VEW+ NGQPEPEGNYR
Sbjct: 360 TISKAIGQSREPQVYTLPPPAEELSRSKVTVTCLVIGFYPPDIHVEWKSNGQPEPEGNYR 419
Query: 1300 TTPPQQDVDGTYFLYSKFSVDKASWQGGGIFQCAVMHEALHNHYTQKSISKTPGK 1464
TTPPQQDVDGT+FLYSK +VDKA W G F+CAVMHEALHNHYTQKSISKT GK
Sbjct: 420 TTPPQQDVDGTFFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQGK 474
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 98.6 bits (244), Expect = 9e-21
Identities = 72/224 (32%), Positives = 100/224 (44%), Gaps = 3/224 (1%)
Frame = +1
Query: 88 LFALLQGVQGEEKLVESGGGLVQTGGSLRLSCVGSGITFSSVDVFWVRQAPGKGLEWLAG 267
L +L G +L + G V GG+ ++C G F S W +Q PG+ +
Sbjct: 10 LLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGN--FGSYYAHWYKQKPGQSPMLVIY 67
Query: 268 VYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCAREGNHIVYDAIDL 447
Y+ A + RF+ S+ S NTA L + + ED A YYC + DA L
Sbjct: 68 EYNKR-----ASGIPDRFSGSK--SGNTATLTISGAQAEDEADYYCQSSDDS---DAGPL 117
Query: 448 WGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTWNSG--ALT 621
+G G + V PK AP V P + L CL S ++P VTVTW +G +T
Sbjct: 118 FGRGTRLSVLRQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVT 177
Query: 622 SGVHTFPSVLQPSGLYSLSSMVTVPASS-LSSKSYTCNVNHPAT 750
GV T Q + Y+ SS + + AS SS +TC V H T
Sbjct: 178 QGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGT 221
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/87 (32%), Positives = 42/87 (48%)
Frame = +1
Query: 1153 PQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGT 1332
P V PP +EEL +K ++ CL+ FYP + V W+ G +G TT P + +
Sbjct: 134 PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQG-VETTKPSKQSNNK 192
Query: 1333 YFLYSKFSVDKASWQGGGIFQCAVMHE 1413
Y S ++ + W+ F C V HE
Sbjct: 193 YAASSYLALSASDWKSSSGFTCQVTHE 219
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 87.0 bits (214), Expect = 3e-17
Identities = 72/233 (30%), Positives = 101/233 (43%), Gaps = 9/233 (3%)
Frame = +1
Query: 79 WVVLFALLQGVQG---EEKLVESGGGLVQTGGSLRLSCV-GSGITFSSVDVFWVRQAPGK 246
W VL L V + +++ V GG++ L+C SG SS W +Q PG+
Sbjct: 3 WTVLLIGLLAVGSGVDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSDYPGWFQQTPGQ 62
Query: 247 GLEWLAGVYSGDTTAYYADSVKGRFTFSRDNSQNTAYLQMHSLRTEDTARYYCA--REGN 420
+ +YS ++ S FS S N A L + + ED A Y+CA + G
Sbjct: 63 PPRTV--IYSTNSRPTGVPS-----RFSGAISGNKATLTITGAQAEDEADYFCALRKSGG 115
Query: 421 HIVYDAIDLWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVT 600
+ + G G V V PK AP V P + L CL S ++P VTVT
Sbjct: 116 TVTF------GGGTHVTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVT 169
Query: 601 WNSG--ALTSGVHTFPSVLQPSGLYSLSSMVTVPASS-LSSKSYTCNVNHPAT 750
W +G +T GV T Q + Y+ SS + + AS SS +TC V H T
Sbjct: 170 WKAGGTTVTQGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGT 222
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/87 (32%), Positives = 42/87 (48%)
Frame = +1
Query: 1153 PQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGT 1332
P V PP +EEL +K ++ CL+ FYP + V W+ G +G TT P + +
Sbjct: 135 PTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQG-VETTKPSKQSNNK 193
Query: 1333 YFLYSKFSVDKASWQGGGIFQCAVMHE 1413
Y S ++ + W+ F C V HE
Sbjct: 194 YAASSYLALSASDWKSSSGFTCQVTHE 220
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 64.7 bits (156), Expect = 1e-10
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Frame = +1
Query: 445 LWGPGVEVVVSSAPKTAPLVYPLAPCGRDTSGPNVALGCLASSYFPEPVTVTWNSG--AL 618
++G G + V PK AP V P + S L CL S ++P VTVTW +G +
Sbjct: 95 VFGGGTRLTVLGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTI 154
Query: 619 TSGVHTFPSVLQPSGLYSLSSMVTVPASS-LSSKSYTCNVNHPATTTK 759
T GV T Q + Y+ SS + + AS SS +TC V H T +
Sbjct: 155 TQGVDTSQPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVE 202
Score = 56.2 bits (134), Expect = 5e-08
Identities = 27/87 (31%), Positives = 42/87 (48%)
Frame = +1
Query: 1153 PQVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGT 1332
P V PP EELS +K ++ CL+ FYP + V W+ G +G T+ P + +
Sbjct: 112 PTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTITQG-VDTSQPSKQSNNK 170
Query: 1333 YFLYSKFSVDKASWQGGGIFQCAVMHE 1413
Y S ++ + W+ F C V H+
Sbjct: 171 YAASSYLALSASDWKSSSGFTCQVTHQ 197
>ref|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-receptor type substrate
1-like [Sus scrofa].
Length = 323
Score = 53.9 bits (128), Expect = 3e-07
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Frame = +1
Query: 856 PKDTLMISRTPQVTCVVVDVSQENPEVQFSWYVDGVEVHTAQTRPKEEQFNSTYRVVSVL 1035
P + +I + +C+ EN + W+ +G E+ + QT + + ++ Y++ S
Sbjct: 123 PLEKALIGQAVNFSCISYGFFPEN--ITLKWFKNGKEISSLQTHVVKLKESNVYKISSTT 180
Query: 1036 PI--QHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTREPQVYTLPPHAEELSRSKVS 1209
+ QD+ C VN+ L P+ +K P T+ +S++K++
Sbjct: 181 EVVLSLQDFY--AYITCDVNHLSLHYPLQGTADLSKTMLVPP---TMSIFEHPVSKNKIN 235
Query: 1210 ITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGTYFLYSKFSVDK 1365
+TC FYP I + W +NG +T P + DG Y + S V+K
Sbjct: 236 VTCKAKKFYPKGIWLTWLKNGNVSRID--KTLTPTKRRDGLYTVQSSILVNK 285
Score = 51.6 bits (122), Expect = 1e-06
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Frame = +1
Query: 358 LQMHSLRTEDTARYYCAR--EGN-HIVYDAIDLWGPGVEVVVSSAPKTAPLVYPLAPCGR 528
+++ + D Y+C + EG I Y + G G +V V AP + P++ + P +
Sbjct: 74 IRISEISLADAGTYFCVKFKEGKPDIEYQS----GQGTQVTVI-APPSLPVI--IGPLEK 126
Query: 529 DTSGPNVALGCLASSYFPEPVTVTW-NSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASS 705
G V C++ +FPE +T+ W +G S + T L+ S +Y +SS V S
Sbjct: 127 ALIGQAVNFSCISYGFFPENITLKWFKNGKEISSLQTHVVKLKESNVYKISSTTEVVLSL 186
Query: 706 LSSKSY-TCNVNH 741
+Y TC+VNH
Sbjct: 187 QDFYAYITCDVNH 199
>ref|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-22-like [Sus scrofa].
Length = 308
Score = 50.8 bits (120), Expect = 2e-06
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = +1
Query: 1141 QTREPQVYTLPPHAEELSRS-KVSITCLVIGFYPPDIDVEWQRNGQPEPEG------NYR 1299
Q R P+V P E+SR+ K ++ CL GFYP +++ W NG+ G YR
Sbjct: 136 QVRPPKVAVFEPSEAEISRTQKATLVCLATGFYPDHVELSWWVNGKQVQSGVSTDLQPYR 195
Query: 1300 TTPPQQDVDGTYFLYSKFSVDKASWQG-GGIFQCAVMHEAL 1419
P + D +Y L S+ V A W F+C V L
Sbjct: 196 EDPSRN--DSSYCLSSRLRVTAAFWHNPRNHFRCQVQFYGL 234
>ref|NP_001107166.1| SLA class II histocompatibility antigen, DQ haplotype C beta chain
precursor [Sus scrofa].
Length = 261
Score = 50.4 bits (119), Expect = 3e-06
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 1/210 (0%)
Frame = +1
Query: 799 PICPACESPGPSVFIFPPKPKDTLMISRTPQVTCVVVDVSQENPEVQFSWYVDGVEVHTA 978
P+ +SP VF F + + T +V V + + ++F V T
Sbjct: 28 PVAEGRDSPQDFVFQFKG---ECYFYNGTQRVRGVARYIYNQEEHLRFDSDVGEFRAVTP 84
Query: 979 QTRPKEEQFNSTYRVVSVLPIQHQDWLNGKEFKCKVNNKDLPAPITRIISKAKGQTR-EP 1155
RP+ + +NS V+ + + + CK N + I Q R +P
Sbjct: 85 LGRPEADSWNSQKDVLEQMRAE-------VDRVCKHNYQ--------IEEGTTLQRRVQP 129
Query: 1156 QVYTLPPHAEELSRSKVSITCLVIGFYPPDIDVEWQRNGQPEPEGNYRTTPPQQDVDGTY 1335
V P AE L+ + + C V FYP + V+W RNGQ E G +TP ++ D TY
Sbjct: 130 TVTISPSKAEALNHHNL-LVCAVTDFYPSQVKVQWFRNGQEETAG-VVSTPLIRNGDWTY 187
Query: 1336 FLYSKFSVDKASWQGGGIFQCAVMHEALHN 1425
+ + + Q G ++ C V H +L N
Sbjct: 188 QVLVMLEM---NLQRGDVYTCRVEHSSLQN 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 48,533,222
Number of extensions: 1651782
Number of successful extensions: 7083
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7016
Number of HSP's successfully gapped: 11
Length of query: 549
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 445
Effective length of database: 8,754,644
Effective search space: 3895816580
Effective search space used: 3895816580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001211
(1648 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896171.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 432 e-118
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 196 3e-47
gb|GL896389.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 3e-25
gb|GL896490.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 109 5e-21
>gb|GL896171.1| Sus scrofa unplaced genomic scaffold chrU_scaffold538
Length = 591
Score = 432 bits (218), Expect = e-118
Identities = 281/302 (93%)
Strand = Plus / Plus
Query: 832 tcggtcttcatcttccctccaaaacccaaggacaccctcatgatctcccggacaccccag 891
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 230 tcggtcttcctcttccctccaaaacccaaggacatcctcatgatctcccggacacccaag 289
Query: 892 gtcacgtgcgtggtggttgatgtgagccaggagaacccggaggtccagttctcctggtac 951
||||||||||||||||| || |||||||||||| | | || ||||||||||||||||||
Sbjct: 290 gtcacgtgcgtggtggtggacgtgagccaggaggaggctgaagtccagttctcctggtac 349
Query: 952 gtggacggcgtagaggtgcacacggcccagacgaggccaaaggaggagcagttcaacagc 1011
|||||||||||| || || ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 350 gtggacggcgtacagttgtacacggcccagacgaggccaatggaggagcagttcaacagc 409
Query: 1012 acctaccgcgtggtcagcgtcctacccatccagcaccaggactggctgaacgggaaggag 1071
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 410 acctaccgcgtggtcagcgtcctgcccatccagcaccaggactggctgaaggggaaggag 469
Query: 1072 ttcaagtgcaaggtcaacaacaaagacctcccagcccccatcacaaggatcatctccaag 1131
||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||
Sbjct: 470 ttcaagtgcaaggtcaacaacaaagacctcctttcccccatcacgaggaccatctccaag 529
Query: 1132 gc 1133
||
Sbjct: 530 gc 531
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 196 bits (99), Expect = 3e-47
Identities = 117/123 (95%)
Strand = Plus / Minus
Query: 290 cctactatgcagactctgtgaagggccgattcacattctccagagacaactcccaaaaca 349
||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct: 2584 cctactacgcagactctgtgaagggccgattcaccatctccagcgacaactcccagaaca 2525
Query: 350 cggcctatctgcaaatgcacagcctgagaaccgaagacacggcccgctattactgtgcaa 409
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 cggcctatctgcaaatgaacagcctgagaaccgaagacacggcccgctattactgtgcaa 2465
Query: 410 gag 412
|||
Sbjct: 2464 gag 2462
>gb|GL896389.1| Sus scrofa unplaced genomic scaffold chrU_scaffold734
Length = 255
Score = 123 bits (62), Expect = 3e-25
Identities = 74/78 (94%)
Strand = Plus / Minus
Query: 1183 gaggagctgtccaggagcaaagtcagcataacctgcctggtcattggcttctacccacct 1242
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 255 gaggagctgtccaggagcaaagtcaccgtaacctgcctggtcattggcttctacccacct 196
Query: 1243 gacatcgatgtcgagtgg 1260
|||||| |||| ||||||
Sbjct: 195 gacatccatgttgagtgg 178
>gb|GL896490.1| Sus scrofa unplaced genomic scaffold chrU_scaffold825
Length = 298
Score = 109 bits (55), Expect = 5e-21
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 690 cgtgccggccagcagcctgtccagcaagagctacacctgcaatgtcaaccacccggccac 749
|||| |||||||||||||||||| | ||||||||| ||||| ||| |||||||||||||
Sbjct: 211 cgtggcggccagcagcctgtccaccctgagctacacgtgcaacgtctaccacccggccac 270
Query: 750 caccaccaaggtggacaagcgtgttgg 776
|| ||||||||||||||||||||||||
Sbjct: 271 caacaccaaggtggacaagcgtgttgg 297
Score = 83.8 bits (42), Expect = 3e-13
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 496 ccattggtctaccctctggccccctgcggcagggacacgtctggccctaacgtggccttg 555
|||| ||||||||||||||||||||| ||||||||| ||||| | |||||||||||||
Sbjct: 38 ccatcggtctaccctctggccccctgtggcagggacgtgtctgatcataacgtggccttg 97
Query: 556 ggctgcctgg 565
||||||||||
Sbjct: 98 ggctgcctgg 107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,128,686
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 5
Length of query: 1648
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1626
Effective length of database: 2,808,408,574
Effective search space: 4566472341324
Effective search space used: 4566472341324
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)