Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001230
(1001 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 ... 227 1e-59
Alignment gi|XP_002694217.1| PREDICTED: chromodomain helicase DNA binding... 129 3e-30
Alignment gi|XP_609360.4| PREDICTED: chromodomain helicase DNA binding pr... 129 3e-30
>ref|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 [Bos taurus].
Length = 1912
Score = 227 bits (579), Expect = 1e-59
Identities = 139/276 (50%), Positives = 142/276 (51%), Gaps = 7/276 (2%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEE+DMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEDDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKE-------LGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 532
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKERLLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 533 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 712
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 121 GPKKEKKSKSKRKEEEEEDEDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 180
Query: 713 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXX 892
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESM 240
Query: 893 XXXXXXXXXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 VTATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKG 276
>ref|XP_002694217.1| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos taurus].
Length = 2099
Score = 129 bits (325), Expect = 3e-30
Identities = 74/175 (42%), Positives = 88/175 (50%)
Frame = +2
Query: 476 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 655
+S+SEGSDY+P QL+ +WG++
Sbjct: 173 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDEEDDNEDGCLKEPKSSGQLMAEWGLD 232
Query: 656 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 835
D+D++FSE DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 233 DVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 292
Query: 836 SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
S I +AK KEGK P R+K KG
Sbjct: 293 SA-AAAAAAVAAAVETVTIAPPLAISPQQAPQPVPIRKAKTKEGKGPGVRKKIKG 346
>ref|XP_609360.4| PREDICTED: chromodomain helicase DNA binding protein 5 [Bos taurus].
Length = 2048
Score = 129 bits (325), Expect = 3e-30
Identities = 74/175 (42%), Positives = 88/175 (50%)
Frame = +2
Query: 476 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 655
+S+SEGSDY+P QL+ +WG++
Sbjct: 122 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDEEDDNEDGCLKEPKSSGQLMAEWGLD 181
Query: 656 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 835
D+D++FSE DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 182 DVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 241
Query: 836 SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
S I +AK KEGK P R+K KG
Sbjct: 242 SA-AAAAAAVAAAVETVTIAPPLAISPQQAPQPVPIRKAKTKEGKGPGVRKKIKG 295
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,662,441
Number of extensions: 675268
Number of successful extensions: 2963
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2952
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,273,310
Effective search space: 3282861300
Effective search space used: 3282861300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001230
(1001 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867915.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867901.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867887.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867881.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867875.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867867.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867860.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867852.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867844.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
Alignment gi|XP_867839.1| PREDICTED: similar to chromodomain helicase DNA... 235 4e-62
>ref|XP_867915.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 24 [Canis familiaris].
Length = 1892
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867901.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 22 [Canis familiaris].
Length = 1933
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867887.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 21 [Canis familiaris].
Length = 1889
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867881.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 20 [Canis familiaris].
Length = 1850
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867875.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 19 [Canis familiaris].
Length = 1887
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867867.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 18 [Canis familiaris].
Length = 1760
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867860.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 17 [Canis familiaris].
Length = 1910
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867852.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 16 [Canis familiaris].
Length = 1756
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867844.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 15 [Canis familiaris].
Length = 1963
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_867839.1| PREDICTED: similar to chromodomain helicase DNA binding protein 4
isoform 14 [Canis familiaris].
Length = 1779
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,975,267
Number of extensions: 695274
Number of successful extensions: 2996
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2918
Number of HSP's successfully gapped: 29
Length of query: 333
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 230
Effective length of database: 15,440,896
Effective search space: 3551406080
Effective search space used: 3551406080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001230
(1001 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Ho... 228 5e-60
Alignment gi|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Ho... 132 6e-31
Alignment gi|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 ... 122 4e-28
Alignment gi|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 iso... 122 4e-28
Alignment gi|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 ... 122 4e-28
>ref|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Homo sapiens].
Length = 1912
Score = 228 bits (582), Expect = 5e-60
Identities = 140/276 (50%), Positives = 142/276 (51%), Gaps = 7/276 (2%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKE-------LGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXX 532
RQKKE LGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKL 120
Query: 533 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 712
AQLLEDWGMEDIDHVFSEEDYRTLTNYKA
Sbjct: 121 GPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKA 180
Query: 713 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXX 892
FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 FSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESM 240
Query: 893 XXXXXXXXXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 VTATEVAPPPPPVEVPIRKAKTKEGKGPNARRKPKG 276
>ref|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Homo sapiens].
Length = 1954
Score = 132 bits (331), Expect = 6e-31
Identities = 75/175 (42%), Positives = 89/175 (50%)
Frame = +2
Query: 476 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 655
+S+SEGSDY+P QL+ +WG++
Sbjct: 85 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEDDNDDGCLKEPKSSGQLMAEWGLD 144
Query: 656 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 835
D+D++FSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 145 DVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 204
Query: 836 SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
S I +AK KEGK P R+K KG
Sbjct: 205 SA-AAAAAAVAAAVETVTISPPLAVSPPQVPQPVPIRKAKTKEGKGPGVRKKIKG 258
>ref|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 isoform 1 [Homo
sapiens].
Length = 2000
Score = 122 bits (307), Expect = 4e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 626 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 805
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 806 FSTNNPFKGSS 838
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
>ref|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 isoform 2 [Homo
sapiens].
Length = 1966
Score = 122 bits (307), Expect = 4e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 626 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 805
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 806 FSTNNPFKGSS 838
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
>ref|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 isoform 3 [Homo
sapiens].
Length = 2059
Score = 122 bits (307), Expect = 4e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 626 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 805
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 195 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 254
Query: 806 FSTNNPFKGSS 838
FS NNPFKGS+
Sbjct: 255 FSANNPFKGSA 265
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,268,191
Number of extensions: 677714
Number of successful extensions: 2875
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2869
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 230
Effective length of database: 14,901,872
Effective search space: 3427430560
Effective search space used: 3427430560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001230
(1001 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mu... 235 4e-62
Alignment gi|NP_001074845.1| chromodomain helicase DNA binding protein 5 ... 127 1e-29
Alignment gi|NP_083492.2| chromodomain helicase DNA binding protein 5 iso... 127 1e-29
Alignment gi|NP_666131.2| chromodomain helicase DNA binding protein 3 [Mu... 122 3e-28
>ref|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mus musculus].
Length = 1915
Score = 235 bits (600), Expect = 4e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPDEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEEDEDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|NP_001074845.1| chromodomain helicase DNA binding protein 5 isoform 1 [Mus musculus].
Length = 1952
Score = 127 bits (319), Expect = 1e-29
Identities = 66/124 (53%), Positives = 78/124 (62%)
Frame = +2
Query: 629 QLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREF 808
QL+ +WG++D+D++FSE+DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREF
Sbjct: 139 QLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREF 198
Query: 809 STNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPQAKDKEGKSPHARR 988
S NNPFKGSS I +AK KEGK P R+
Sbjct: 199 SANNPFKGSSA-AAAAAAVAAAVETVTIAPPLAISPQQVPQTLPIRKAKTKEGKGPGVRK 257
Query: 989 KPKG 1000
K KG
Sbjct: 258 KNKG 261
>ref|NP_083492.2| chromodomain helicase DNA binding protein 5 isoform 2 [Mus musculus].
Length = 1915
Score = 127 bits (319), Expect = 1e-29
Identities = 66/124 (53%), Positives = 78/124 (62%)
Frame = +2
Query: 629 QLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREF 808
QL+ +WG++D+D++FSE+DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREF
Sbjct: 139 QLMAEWGLDDVDYLFSEDDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREF 198
Query: 809 STNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPQAKDKEGKSPHARR 988
S NNPFKGSS I +AK KEGK P R+
Sbjct: 199 SANNPFKGSSA-AAAAAAVAAAVETVTIAPPLAISPQQVPQTLPIRKAKTKEGKGPGVRK 257
Query: 989 KPKG 1000
K KG
Sbjct: 258 KNKG 261
>ref|NP_666131.2| chromodomain helicase DNA binding protein 3 [Mus musculus].
Length = 2021
Score = 122 bits (307), Expect = 3e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 626 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 805
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 188 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 247
Query: 806 FSTNNPFKGSS 838
FS NNPFKGS+
Sbjct: 248 FSANNPFKGSA 258
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,612,773
Number of extensions: 557553
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2312
Number of HSP's successfully gapped: 6
Length of query: 333
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 231
Effective length of database: 12,553,887
Effective search space: 2899947897
Effective search space used: 2899947897
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001230
(1001 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126577.2| PREDICTED: chromodomain-helicase-DNA-binding... 235 3e-62
Alignment gi|XP_003127574.2| PREDICTED: chromodomain-helicase-DNA-binding... 130 1e-30
Alignment gi|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding... 122 2e-28
Alignment gi|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding... 122 2e-28
>ref|XP_003126577.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Sus scrofa].
Length = 1295
Score = 235 bits (600), Expect = 3e-62
Identities = 140/269 (52%), Positives = 142/269 (52%)
Frame = +2
Query: 194 MASGLGSPSPCSAGSEEEDMDALLNNSLXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXX 373
MASGLGSPSPCSAGSEEEDMDALLNNSL T
Sbjct: 1 MASGLGSPSPCSAGSEEEDMDALLNNSLPPPHPENEEDPEEDLSEAETPKLKKKKKPKKP 60
Query: 374 XXXXXXXXXRQKKELGDSSXXXXXXXXXXXXXALRSDSEGSDYTPGXXXXXXXXXXXXXX 553
RQKKELGDSS ALRSDSEGSDYTPG
Sbjct: 61 RDPKIPKSKRQKKELGDSSGEGPEFVEEEEEVALRSDSEGSDYTPGKKKKKKLGPKKEKK 120
Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 733
AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP
Sbjct: 121 SKSKRKEEEEEDDDDDDSKEPKSSAQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRP 180
Query: 734 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGXXXXXXXXXXXXXXXXXXXXXXXX 913
LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSG
Sbjct: 181 LIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGSSGASVAAAAAAAVAVVESMVTATEVA 240
Query: 914 XXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
I +AK KEGK P+ARRKPKG
Sbjct: 241 PPPPPVEVPIRKAKTKEGKGPNARRKPKG 269
>ref|XP_003127574.2| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Sus scrofa].
Length = 2054
Score = 130 bits (326), Expect = 1e-30
Identities = 74/175 (42%), Positives = 88/175 (50%)
Frame = +2
Query: 476 RSDSEGSDYTPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQLLEDWGME 655
+S+SEGSDY+P QL+ +WG++
Sbjct: 106 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDEDDNDDGCLKEPKSSGQLMAEWGLD 165
Query: 656 DIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPFKGS 835
D+D++FSE DY TLTNYKAFSQF+RPLIA KNPKI +SKMM VLGAKWREFS NNPFKGS
Sbjct: 166 DVDYLFSEADYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGS 225
Query: 836 SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPQAKDKEGKSPHARRKPKG 1000
S I +AK KEGK P R+K KG
Sbjct: 226 SA-AAAAAAVAAAVETVTIAPPLTISPQQAPQPVPIRKAKTKEGKGPGVRKKVKG 279
>ref|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1
[Sus scrofa].
Length = 1968
Score = 122 bits (307), Expect = 2e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 626 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 805
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 806 FSTNNPFKGSS 838
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
>ref|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2
[Sus scrofa].
Length = 2002
Score = 122 bits (307), Expect = 2e-28
Identities = 56/71 (78%), Positives = 63/71 (88%)
Frame = +2
Query: 626 AQLLEDWGMEDIDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKWRE 805
A LL WG+ED++HVFSEEDY TLTNYKAFSQF+RPLIA KNPKI +SKMM +LGAKWRE
Sbjct: 136 ATLLLTWGLEDVEHVFSEEDYHTLTNYKAFSQFMRPLIAKKNPKIPMSKMMTILGAKWRE 195
Query: 806 FSTNNPFKGSS 838
FS NNPFKGS+
Sbjct: 196 FSANNPFKGSA 206
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,557,167
Number of extensions: 438815
Number of successful extensions: 1953
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1937
Number of HSP's successfully gapped: 5
Length of query: 333
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,879,129
Effective search space: 2077716186
Effective search space used: 2077716186
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001230
(1001 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 355 3e-95
Sscrofa_Chr06 72 6e-10
>Sscrofa_Chr05
|| Length = 111506441
Score = 355 bits (179), Expect = 3e-95
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 115 gtgactcgggccagtgtcgagggccccaggccgcaggcaggagcagctgggccaattccc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66505618 gtgactcgggccagtgtcgagggccccaggccgcaggcaggagcagctgggccaattccc 66505559
Query: 175 tggccgggagcggaaggggatggcgtcgggcctgggctccccgtccccctgctcagcggg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66505558 tggccgggagcggaaggggatggcgtcgggcctgggctccccgtccccctgctcagcggg 66505499
Query: 235 cagtgaggaggaggatatggatgcacttttgaacaacagcctgcccccaccccacccag 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66505498 cagtgaggaggaggatatggatgcacttttgaacaacagcctgcccccaccccacccag 66505440
Score = 297 bits (150), Expect = 6e-78
Identities = 194/216 (89%)
Strand = Plus / Minus
Query: 729 gacccctcattgctgccaaaaaccccaagatcgctgtctccaagatgatgatggttttgg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66500930 gacccctcattgctgccaaaaaccccaagatcgctgtctccaagatgatgatggttttgg 66500871
Query: 789 gtgcgaagtggcgggagttcagcaccaacaaccccttcaaaggcagttctggggcttctg 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66500870 gtgcgaagtggcgggagttcagcaccaacaaccccttcaaaggcagttctggggcttctg 66500811
Query: 849 tgnnnnnnnnnnnnnnnnnnnnnntggccgtggtggagagcatggtgacggccacagagg 908
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 66500810 tggcagcggcagcagcagcagcagtggccgtggtggagagcatggtgacggccacagagg 66500751
Query: 909 ttgcaccacctccaccccccgtggaggtgcctatcc 944
||||||||||||||||||||||||||||||||||||
Sbjct: 66500750 ttgcaccacctccaccccccgtggaggtgcctatcc 66500715
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Minus
Query: 609 aggagcctaaatcatctgctcagctcttggaagactggggcatggaagacattgaccacg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501174 aggagcctaaatcatctgctcagctcttggaagactggggcatggaagacattgaccacg 66501115
Query: 669 tgttctcagaggaagattatcgcaccctcaccaactacaaggccttcagccagtttgtcc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501114 tgttctcagaggaagattatcgcaccctcaccaactacaaggccttcagccagtttgtcc 66501055
Query: 729 g 729
|
Sbjct: 66501054 g 66501054
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 291 cagaaaacgaagaggacccggaagaggatttgtccgaagcagagactccaaagctcaaga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501913 cagaaaacgaagaggacccggaagaggatttgtccgaagcagagactccaaagctcaaga 66501854
Query: 351 agaagaaaaagcctaagaaacctcgggaccctaaaattcctaagagcaagcgcc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501853 agaagaaaaagcctaagaaacctcgggaccctaaaattcctaagagcaagcgcc 66501800
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 6 agaggcgacgctggagccggagccattttccccccttcggccgcggcgaggaggagccgg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66506413 agaggcgacgctggagccggagccattttccccccttcggccgcggcgaggaggagccgg 66506354
Query: 66 agcgggagtgacacccggccggaccctgcgcgacctgcggcggctccggg 115
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66506353 agcgggagtgacacccggccggaccctgcgcgacctgcggcggctccggg 66506304
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 414 agctgggggacagctctggggaggggccggagtttgtggaggaggaagaagaggtggctc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66501580 agctgggggacagctctggggaggggccggagtttgtggaggaggaagaagaggtggctc 66501521
Query: 474 tgcgctcagacagtgagggcagcgactatacccccggc 511
||||||||||||||||||||||||||||||||||||||
Sbjct: 66501520 tgcgctcagacagtgagggcagcgactatacccccggc 66501483
Score = 71.9 bits (36), Expect = 6e-10
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 577 ggaggaggaggacgacgatgacgatgattcaaaggagcct 616
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66501417 ggaggaggaggacgacgatgacgatgattcaaaggtgcct 66501378
>Sscrofa_Chr06
|| Length = 157765593
Score = 71.9 bits (36), Expect = 6e-10
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 767 tccaagatgatgatggttttgggtgcgaagtggcgggagttcagcaccaacaaccccttc 826
||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 61983483 tccaagatgatgaccgtcctgggtgccaagtggcgggagttcagtgccaacaaccccttc 61983424
Query: 827 aaaggcag 834
|| |||||
Sbjct: 61983423 aagggcag 61983416
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,027,362
Number of extensions: 340
Number of successful extensions: 340
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 9
Length of query: 1001
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 980
Effective length of database: 2,808,413,156
Effective search space: 2752244892880
Effective search space used: 2752244892880
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)