Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001245
(1547 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068775.1| pre-mRNA-splicing factor 38A [Bos taurus]. 409 e-114
>ref|NP_001068775.1| pre-mRNA-splicing factor 38A [Bos taurus].
Length = 312
Score = 409 bits (1051), Expect = e-114
Identities = 204/222 (91%), Positives = 204/222 (91%)
Frame = +3
Query: 216 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 395
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 396 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 575
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 576 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 755
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 756 VSALXXXXXXXXXXXXXXXXXXKLERVPSPDHRRRSYRDLDK 881
VSAL KLERVPSPDHRRRSYRDLDK
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDK 222
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,058,525
Number of extensions: 1312427
Number of successful extensions: 5840
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5781
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,140,958
Effective search space: 5769510864
Effective search space used: 5769510864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001245
(1547 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532574.2| PREDICTED: similar to PRP38 pre-mRNA processing... 409 e-114
>ref|XP_532574.2| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast)
domain containing A isoform 2 [Canis familiaris].
Length = 312
Score = 409 bits (1051), Expect = e-114
Identities = 204/222 (91%), Positives = 204/222 (91%)
Frame = +3
Query: 216 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 395
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 396 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 575
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 576 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 755
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 756 VSALXXXXXXXXXXXXXXXXXXKLERVPSPDHRRRSYRDLDK 881
VSAL KLERVPSPDHRRRSYRDLDK
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDK 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,496,118
Number of extensions: 1363206
Number of successful extensions: 6146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6084
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 408
Effective length of database: 15,307,552
Effective search space: 6245481216
Effective search space used: 6245481216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001245
(1547 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116253.2| pre-mRNA-splicing factor 38A [Homo sapiens]. 409 e-114
>ref|NP_116253.2| pre-mRNA-splicing factor 38A [Homo sapiens].
Length = 312
Score = 409 bits (1051), Expect = e-114
Identities = 204/222 (91%), Positives = 204/222 (91%)
Frame = +3
Query: 216 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 395
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 396 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 575
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 576 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 755
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 756 VSALXXXXXXXXXXXXXXXXXXKLERVPSPDHRRRSYRDLDK 881
VSAL KLERVPSPDHRRRSYRDLDK
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDK 222
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,475,690
Number of extensions: 1343704
Number of successful extensions: 6013
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5959
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 408
Effective length of database: 14,770,016
Effective search space: 6026166528
Effective search space used: 6026166528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001245
(1547 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766285.2| pre-mRNA-splicing factor 38A [Mus musculus]. 402 e-112
>ref|NP_766285.2| pre-mRNA-splicing factor 38A [Mus musculus].
Length = 312
Score = 402 bits (1032), Expect = e-112
Identities = 201/222 (90%), Positives = 202/222 (90%)
Frame = +3
Query: 216 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 395
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMEL+FVGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60
Query: 396 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 575
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 576 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 755
EPLYNDYRKIKSQNRNGEF LMHVDEFI ELLHSERVCDIILPRLQKRYVLEEAEQLEPR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 756 VSALXXXXXXXXXXXXXXXXXXKLERVPSPDHRRRSYRDLDK 881
VSAL KLERVPSPDHRRRSYRDLDK
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDK 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,612,745
Number of extensions: 1136644
Number of successful extensions: 5028
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4969
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 409
Effective length of database: 12,433,743
Effective search space: 5085400887
Effective search space used: 5085400887
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001245
(1547 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360734.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl... 406 e-113
Alignment gi|XP_003128054.1| PREDICTED: pre-mRNA-splicing factor 38A-like... 201 1e-51
>ref|XP_003360734.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor 38A-like
[Sus scrofa].
Length = 312
Score = 406 bits (1043), Expect = e-113
Identities = 203/222 (91%), Positives = 203/222 (91%)
Frame = +3
Query: 216 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 395
MANRTVKDAHSIHGTNPQ LVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQXLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 396 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 575
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120
Query: 576 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 755
EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180
Query: 756 VSALXXXXXXXXXXXXXXXXXXKLERVPSPDHRRRSYRDLDK 881
VSAL KLERVPSPDHRRRSYRDLDK
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDK 222
>ref|XP_003128054.1| PREDICTED: pre-mRNA-splicing factor 38A-like [Sus scrofa].
Length = 97
Score = 201 bits (510), Expect = 1e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Frame = +3
Query: 216 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 395
MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV
Sbjct: 1 MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60
Query: 396 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFK 506
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFK
Sbjct: 61 YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFK 97
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,865,397
Number of extensions: 844199
Number of successful extensions: 3875
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3833
Number of HSP's successfully gapped: 2
Length of query: 515
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 412
Effective length of database: 8,779,541
Effective search space: 3617170892
Effective search space used: 3617170892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001245
(1547 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 636 e-180
>Sscrofa_Chr06
|| Length = 157765593
Score = 636 bits (321), Expect = e-180
Identities = 337/345 (97%)
Strand = Plus / Minus
Query: 1 acgtacttccgccaacgtgccctgggcctcggtcgcgacgcgattcacggaagttcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147478527 acgtacttccgccaacgtgccctgggcctcggtcgcgacgcgattcacggaagttcctga 147478468
Query: 61 agcagaagcgattccggtttcaagaggatcggctaagctgttcagtgagacttcctccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147478467 agcagaagcgattccggtttcaagaggatcggctaagctgttcagtgagacttcctccaa 147478408
Query: 121 ctttctcaggccctctcgggttgttgttgcnnnnnnnnaacctggatgtgacgtactaaa 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 147478407 ctttctcaggccctctcgggttgttgttgcttttttttaacctggatgtgacgtactaaa 147478348
Query: 181 ggagtcgacggaagtagaaccgaaggggttctaaaatggcgaaccgtacggtaaaggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147478347 ggagtcgacggaagtagaaccgaaggggttctaaaatggcgaaccgtacggtaaaggatg 147478288
Query: 241 cgcacagcatccacggcaccaaccctcagtatctggtggagaagatcattcggactcgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147478287 cgcacagcatccacggcaccaaccctcagtatctggtggagaagatcattcggactcgaa 147478228
Query: 301 tctatgagtccaagtattggaaggaggagtgctttggccttacgg 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147478227 tctatgagtccaagtattggaaggaggagtgctttggccttacgg 147478183
Score = 410 bits (207), Expect = e-112
Identities = 236/242 (97%), Gaps = 3/242 (1%)
Strand = Plus / Plus
Query: 1308 aatgaaagaggtactgagttttgtatctctttttgaattgtaatccacatatttgaggga 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147313331 aatgaaagaggtactgagttttgtatctctttttgaattgtaatccacatatttgaggga 147313390
Query: 1368 tgatgcttcccaaaagctgcttttgacctctttgtatgaccaaccttgtttgtactcaaa 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147313391 tgatgcttcccaaaagctgcttttgacctctttgtatgaccaaccttgtttgtactcaaa 147313450
Query: 1428 ttatgagggtagaatgcatttggatagagggtacgaatgatggggaggatgtggcccccg 1487
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 147313451 ttatgagggtagaatgcatttggatagagggtacgaatgatggggaggatgtagcccccg 147313510
Query: 1488 gtgatccttttgctnat-aatttgatatacccatttcctatttttctgtgg-ttagtttt 1545
|||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 147313511 gtga-ccttttgctattaaatttgatatacccatttcctatttttctgtggtttagtttt 147313569
Query: 1546 gg 1547
||
Sbjct: 147313570 gg 147313571
Score = 325 bits (164), Expect = 4e-86
Identities = 164/164 (100%)
Strand = Plus / Minus
Query: 345 gctgaacttgtagttgataaagccatggaattaaggttcgtgggtggtgtctatggtggc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147476228 gctgaacttgtagttgataaagccatggaattaaggttcgtgggtggtgtctatggtggc 147476169
Query: 405 aacataaagccaactcccttcctgtgtttgaccttgaagatgcttcagattcagcccgag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147476168 aacataaagccaactcccttcctgtgtttgaccttgaagatgcttcagattcagcccgag 147476109
Query: 465 aaggatatcattgtagagtttatcaaaaatgaagatttcaagta 508
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147476108 aaggatatcattgtagagtttatcaaaaatgaagatttcaagta 147476065
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 1110 agatctaagaaaagccacaagaagagccggagagggaatgagtaatggactcagtctggt 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147313132 agatctaagaaaagccacaagaagagccggagagggaatgagtaatggactcagtctggt 147313191
Query: 1170 tttagtccagatggccttctgtggaggagacagcatctgtgtgggagaacaaatgaagat 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147313192 tttagtccagatggccttctgtggaggagacagcatctgtgtgggagaacaaatgaagat 147313251
Query: 1230 ctattccccaggcagctatgggaata 1255
||||||||||||||||||||||||||
Sbjct: 147313252 ctattccccaggcagctatgggaata 147313277
Score = 230 bits (116), Expect = 2e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 823 agctggagagagtgccatcacctgatcaccgccggagaagttaccgagacttggacaagc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147310080 agctggagagagtgccatcacctgatcaccgccggagaagttaccgagacttggacaagc 147310139
Query: 883 cccgtcgctctcccacactacggtatcggaggagcaggagtcgatctcccagaagg 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147310140 cccgtcgctctcccacactacggtatcggaggagcaggagtcgatctcccagaagg 147310195
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 963 agcccctcccctcgccgcgaaaggcatcggagcaagagtccaagacgtcaccgtagcagg 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147311191 agcccctcccctcgccgcgaaaggcatcggagcaagagtccaagacgtcaccgtagcagg 147311250
Query: 1023 tctcgtgacagacggcacagatcccgttccaagtccccaggt 1064
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Sbjct: 147311251 tctcgtgacagacggcacagatcccgttccaagtccccaggt 147311292
Score = 103 bits (52), Expect = 3e-19
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 1056 tccccaggtcatcaccgtagtcacagacacaggagccactcaaagtctcctgaaag 1111
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Sbjct: 147311755 tccccaggtcatcaccgtagtcacagacacaggagccactcaaagtctcccgaaag 147311810
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,109,752
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 8
Length of query: 1547
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1526
Effective length of database: 2,808,413,156
Effective search space: 4285638476056
Effective search space used: 4285638476056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)