Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001257
(1480 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014894.1| 60S ribosomal protein L4 [Bos taurus]. 645 0.0
Alignment gi|XP_002695663.1| PREDICTED: 60S ribosomal protein L4-like [Bo... 622 e-178
Alignment gi|XP_871569.1| PREDICTED: 60S ribosomal protein L4-like isofor... 622 e-178
>ref|NP_001014894.1| 60S ribosomal protein L4 [Bos taurus].
Length = 422
Score = 645 bits (1665), Expect = 0.0
Identities = 323/362 (89%), Positives = 325/362 (89%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLDELYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAAL+A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALEA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
>ref|XP_002695663.1| PREDICTED: 60S ribosomal protein L4-like [Bos taurus].
Length = 422
Score = 622 bits (1605), Expect = e-178
Identities = 312/362 (86%), Positives = 319/362 (88%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYS+KGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSKKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGG TH SGQGAFGNMCRGGRMFAPTKTW+RWH RVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGRTHHSGQGAFGNMCRGGRMFAPTKTWQRWHHRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSELAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKSKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNR RIQRRGPCIIYNEDNGIIKAFR+IPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRHRIQRRGPCIIYNEDNGIIKAFRSIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGG+VGRFCIWTESAFRKLDELYGTW KAA+LKSNYN PMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGYVGRFCIWTESAFRKLDELYGTWCKAASLKSNYNHPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAA++A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAAVEA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
>ref|XP_871569.1| PREDICTED: 60S ribosomal protein L4-like isoform 2 [Bos taurus].
Length = 422
Score = 622 bits (1605), Expect = e-178
Identities = 312/362 (86%), Positives = 319/362 (88%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYS+KGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSKKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGG TH SGQGAFGNMCRGGRMFAPTKTW+RWH RVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGRTHHSGQGAFGNMCRGGRMFAPTKTWQRWHHRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSELAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKSKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNR RIQRRGPCIIYNEDNGIIKAFR+IPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRHRIQRRGPCIIYNEDNGIIKAFRSIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGG+VGRFCIWTESAFRKLDELYGTW KAA+LKSNYN PMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGYVGRFCIWTESAFRKLDELYGTWCKAASLKSNYNHPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAA++A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAAVEA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,328,161
Number of extensions: 1419347
Number of successful extensions: 4344
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4342
Number of HSP's successfully gapped: 3
Length of query: 493
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 387
Effective length of database: 14,174,046
Effective search space: 5485355802
Effective search space used: 5485355802
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001257
(1480 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535522.1| PREDICTED: similar to ribosomal protein L4 isof... 642 0.0
Alignment gi|XP_849762.1| PREDICTED: similar to ribosomal protein L4 isof... 642 0.0
Alignment gi|XP_852791.1| PREDICTED: similar to ribosomal protein L4 isof... 642 0.0
Alignment gi|XP_859663.1| PREDICTED: similar to ribosomal protein L4 isof... 611 e-175
Alignment gi|XP_852986.1| PREDICTED: similar to ribosomal protein L4 [Can... 610 e-174
Alignment gi|XP_850171.1| PREDICTED: similar to ribosomal protein L4 isof... 602 e-172
Alignment gi|XP_866430.1| PREDICTED: similar to 60S ribosomal protein L4 ... 540 e-153
Alignment gi|XP_866420.1| PREDICTED: similar to 60S ribosomal protein L4 ... 506 e-143
Alignment gi|XP_859635.1| PREDICTED: similar to ribosomal protein L4 isof... 453 e-127
Alignment gi|XP_866407.1| PREDICTED: similar to ribosomal protein L4 isof... 453 e-127
>ref|XP_535522.1| PREDICTED: similar to ribosomal protein L4 isoform 1 [Canis
familiaris].
Length = 422
Score = 642 bits (1657), Expect = 0.0
Identities = 320/362 (88%), Positives = 325/362 (89%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA+NHK+RMDKAAAAL+A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
>ref|XP_849762.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis
familiaris].
Length = 422
Score = 642 bits (1657), Expect = 0.0
Identities = 320/362 (88%), Positives = 325/362 (89%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA+NHK+RMDKAAAAL+A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
>ref|XP_852791.1| PREDICTED: similar to ribosomal protein L4 isoform 1 [Canis
familiaris].
Length = 422
Score = 642 bits (1657), Expect = 0.0
Identities = 320/362 (88%), Positives = 325/362 (89%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA+NHK+RMDKAAAAL+A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
>ref|XP_859663.1| PREDICTED: similar to ribosomal protein L4 isoform 4 [Canis
familiaris].
Length = 411
Score = 611 bits (1575), Expect = e-175
Identities = 309/362 (85%), Positives = 314/362 (86%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPR GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPR-----------GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 109
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 110 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 169
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 170 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 229
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 230 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 289
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA+NHK+RMDKAAAAL+A
Sbjct: 290 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 349
Query: 1145 KS 1150
KS
Sbjct: 350 KS 351
>ref|XP_852986.1| PREDICTED: similar to ribosomal protein L4 [Canis familiaris].
Length = 411
Score = 610 bits (1572), Expect = e-174
Identities = 308/362 (85%), Positives = 314/362 (86%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPR GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPR-----------GAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 109
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 110 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 169
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQR+RAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 170 KKVYASQRLRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 229
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 230 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 289
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA+NHK+RMDKAAAAL+A
Sbjct: 290 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 349
Query: 1145 KS 1150
KS
Sbjct: 350 KS 351
>ref|XP_850171.1| PREDICTED: similar to ribosomal protein L4 isoform 2 [Canis
familiaris].
Length = 411
Score = 602 bits (1552), Expect = e-172
Identities = 305/362 (84%), Positives = 312/362 (86%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVY EKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRK+NRQPYAVSELAGH
Sbjct: 1 MACARPLISVYYEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKSNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPR GAFGNMCRGGRMFAPTKTW RWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPR-----------GAFGNMCRGGRMFAPTKTWCRWHRRVNTTQK 109
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 110 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 169
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 170 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 229
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 230 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 289
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQA+NHK+RMD+AAAAL+A
Sbjct: 290 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDQAAAALEA 349
Query: 1145 KS 1150
KS
Sbjct: 350 KS 351
>ref|XP_866430.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) isoform 8
[Canis familiaris].
Length = 309
Score = 540 bits (1390), Expect = e-153
Identities = 267/307 (86%), Positives = 270/307 (87%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LKSNYNLPMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR 300
Query: 965 ALRAPRK 985
ALRAPR+
Sbjct: 301 ALRAPRR 307
>ref|XP_866420.1| PREDICTED: similar to 60S ribosomal protein L4 (L1) isoform 7
[Canis familiaris].
Length = 295
Score = 506 bits (1302), Expect = e-143
Identities = 256/306 (83%), Positives = 257/306 (83%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLD+LYGT LPMHKMLNTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDDLYGTC-----------LPMHKMLNTDLSRILKSPEIQR 289
Query: 965 ALRAPR 982
ALRAPR
Sbjct: 290 ALRAPR 295
>ref|XP_859635.1| PREDICTED: similar to ribosomal protein L4 isoform 3 [Canis
familiaris].
Length = 328
Score = 453 bits (1165), Expect = e-127
Identities = 226/268 (84%), Positives = 231/268 (86%)
Frame = +2
Query: 347 MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXX 526
MCRGGRMFAPTKTWRRWHRRVNTTQKRYAIC VMSKGHRI
Sbjct: 1 MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60
Query: 527 XDKVESYXXXXXXXXXXXXXXAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 706
DKVE Y AWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED
Sbjct: 61 EDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120
Query: 707 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLK 886
NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LK
Sbjct: 121 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLK 180
Query: 887 SNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT 1066
SNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT
Sbjct: 181 SNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT 240
Query: 1067 MRRNTILRQARNHKIRMDKAAAALKAKS 1150
MRRNTILRQA+NHK+RMDKAAAAL+AKS
Sbjct: 241 MRRNTILRQAKNHKLRMDKAAAALEAKS 268
>ref|XP_866407.1| PREDICTED: similar to ribosomal protein L4 isoform 6 [Canis
familiaris].
Length = 328
Score = 453 bits (1165), Expect = e-127
Identities = 226/268 (84%), Positives = 231/268 (86%)
Frame = +2
Query: 347 MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXX 526
MCRGGRMFAPTKTWRRWHRRVNTTQKRYAIC VMSKGHRI
Sbjct: 1 MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVV 60
Query: 527 XDKVESYXXXXXXXXXXXXXXAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 706
DKVE Y AWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED
Sbjct: 61 EDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNED 120
Query: 707 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLK 886
NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLD+LYGTWRKAA+LK
Sbjct: 121 NGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLK 180
Query: 887 SNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT 1066
SNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT
Sbjct: 181 SNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKT 240
Query: 1067 MRRNTILRQARNHKIRMDKAAAALKAKS 1150
MRRNTILRQA+NHK+RMDKAAAAL+AKS
Sbjct: 241 MRRNTILRQAKNHKLRMDKAAAALEAKS 268
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,296,129
Number of extensions: 1411352
Number of successful extensions: 4516
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 4508
Number of HSP's successfully gapped: 24
Length of query: 493
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 386
Effective length of database: 15,307,552
Effective search space: 5908715072
Effective search space used: 5908715072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001257
(1480 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000959.2| 60S ribosomal protein L4 [Homo sapiens]. 637 0.0
>ref|NP_000959.2| 60S ribosomal protein L4 [Homo sapiens].
Length = 427
Score = 637 bits (1643), Expect = 0.0
Identities = 320/365 (87%), Positives = 325/365 (89%), Gaps = 3/365 (0%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLDELYGTWRKAA+LKSNYNLPMHKM+NTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDK---AAAA 1135
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHK+R+DK AAAA
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVDKAAAAAAA 360
Query: 1136 LKAKS 1150
L+AKS
Sbjct: 361 LQAKS 365
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,492,193
Number of extensions: 1402268
Number of successful extensions: 4201
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4198
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 386
Effective length of database: 14,770,016
Effective search space: 5701226176
Effective search space used: 5701226176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001257
(1480 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077174.1| 60S ribosomal protein L4 [Mus musculus]. 630 0.0
>ref|NP_077174.1| 60S ribosomal protein L4 [Mus musculus].
Length = 419
Score = 630 bits (1626), Expect = 0.0
Identities = 317/365 (86%), Positives = 321/365 (87%), Gaps = 3/365 (0%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVE Y AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLDELYGTWRKAA+LKSNYNLPMHKM+NTDLSRILKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDK---AAAA 1135
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHK+R+ K AA A
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVKKLEAAATA 360
Query: 1136 LKAKS 1150
L KS
Sbjct: 361 LATKS 365
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,583,042
Number of extensions: 1195561
Number of successful extensions: 3610
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3610
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 388
Effective length of database: 12,463,779
Effective search space: 4835946252
Effective search space used: 4835946252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001257
(1480 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121789.2| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma... 648 0.0
>ref|XP_003121789.2| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L4 [Sus
scrofa].
Length = 427
Score = 648 bits (1672), Expect = 0.0
Identities = 325/362 (89%), Positives = 325/362 (89%)
Frame = +2
Query: 65 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 244
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
Sbjct: 1 MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH 60
Query: 245 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 424
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
Sbjct: 61 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK 120
Query: 425 RYAICXXXXXXXXXXXVMSKGHRIXXXXXXXXXXXDKVESYXXXXXXXXXXXXXXAWNDI 604
RYAIC VMSKGHRI DKVESY AWNDI
Sbjct: 121 RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDI 180
Query: 605 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 784
KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL
Sbjct: 181 KKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKL 240
Query: 785 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQR 964
APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSR LKSPEIQR
Sbjct: 241 APGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRXLKSPEIQR 300
Query: 965 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 1144
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKA 360
Query: 1145 KS 1150
KS
Sbjct: 361 KS 362
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,999,270
Number of extensions: 957150
Number of successful extensions: 2656
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2652
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,779,541
Effective search space: 3424020990
Effective search space used: 3424020990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001257
(1480 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1400 0.0
Sscrofa_Chr02 696 0.0
Sscrofa_Chr06 400 e-109
Sscrofa_Chr03 317 1e-83
Sscrofa_Chr08 176 2e-41
Sscrofa_Chr14 157 2e-35
Sscrofa_Chr15 115 7e-23
Sscrofa_Chr07 111 1e-21
>Sscrofa_Chr01
|| Length = 315321322
Score = 1400 bits (706), Expect = 0.0
Identities = 941/1017 (92%), Gaps = 6/1017 (0%)
Strand = Plus / Plus
Query: 261 cttggggtactggcagagctgtggctcgaattcccagggttcgaggtggtgggactcacc 320
||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||
Sbjct: 215499396 cttggggtactggcagagctgaggctcgaattcccagggttcaaggtggcgggactcact 215499455
Query: 321 gttctggccagggtgcttttggaaatatgtgtcgtgggggccgcatgtttgcgccaacca 380
||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 215499456 gttctgggcagggtg-ttttggaaatatgtgtcgtgggggccacatgtttgcaccaacca 215499514
Query: 381 agacctggcgacgttggcatcgcagagtgaacacaacacagaagcgatatgccatctgct 440
|||||||||||| |||| | | ||||||||| |||||||||||||||||||||||||||
Sbjct: 215499515 agacctggcgacattggtaccacagagtgaaggcaacacagaagcgatatgccatctgct 215499574
Query: 441 ctgcactggctgcctcagccttaccagcgctggtcatgtctaaaggtcatcggattgagg 500
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 215499575 ctgcactggctgcctcggccttaccagcgctggtcatgtctaaaggtcattggattgaag 215499634
Query: 501 aagttcctgaacttcctttggtggttgaagataaagttgaaagctacnnnnnnnccaagg 560
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 215499635 aagttcctgaactacctttggtggttgaagataaagttgaaagttacaaaaagaccaagg 215499694
Query: 561 aggctgttctgcttctgaagaagcttaaggcctggaatgatatcaagaa-ggtttatgcc 619
|||||||||||||| ||||||||||||||| ||||||||||||||| || ||| ||||||
Sbjct: 215499695 aggctgttctgcttttgaagaagcttaaggtctggaatgatatcaaaaaaggtctatgcc 215499754
Query: 620 tctcagcgaatgagagctggtaaaggcaaaatgagaaaccgtcgccgaatccagcgcagg 679
||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct: 215499755 tctcagcaaatgagagctggtaaaggcaaaatgagaaaccatcaccgtatccagcgcagg 215499814
Query: 680 ggaccctgcatcatctataatgaggacaatggtatcatcaaagccttcagaaacatccct 739
||| ||| |||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 215499815 ggatcctccatcatctatgatgatgacaatggtatcatcaaggccttcagaaacatccct 215499874
Query: 740 ggaattactctgcttaacgtaagcaaactgaacattttgaaacttgctcctggtgggcat 799
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215499875 ggaattactctgcttaatgtaagcaaactgaacattttgaaacttgctcctggtgggcat 215499934
Query: 800 gtgggacgtttctgcatttggactgaaagtgctttccgcaagttagatgagctctatggc 859
||||||||||||||||||||||||||||||| |||||||||||||||| |||| | || |
Sbjct: 215499935 gtgggacgtttctgcatttggactgaaagtgttttccgcaagttagataagctatgtg-c 215499993
Query: 860 acttggcgtaaagctgctaccctcaagagtaactacaaccttcccatgcataagatgctc 919
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 215499994 acttggagtaaagccacttccctcaagagtaactacaaccttcccatgcataagatgttc 215500053
Query: 920 aatacagaccttagcagaatcttgaaaagcccagagatccaaagagccctccgcgcacca 979
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 215500054 aatacagaccttagcagaatcttgaaaagcccagagatccaaagagccctccatgcacca 215500113
Query: 980 cgcaagaagattcatcgtagagttctgaagaagaatccactgaaaaacctgagaatcatg 1039
||||||| ||| ||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 215500114 tgcaagaaaatttatcatagagttttgaagaagaatccactgaaaaacctcagaatcatg 215500173
Query: 1040 ttgaagctaaacccgtatgcaaagacaatgcgccgaaacaccattcttcgccaggccagg 1099
||||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 215500174 ttgaagctaaacctgtatgcacagacaatgtgctgaaacaccattcttcgccaggccagg 215500233
Query: 1100 aatcacaaaatccggatggataaggcggcagcagcactgaaagccaaatcaggtgagaag 1159
||| ||||||| ||||| ||||||| |||||||||||| ||||||||||||||| ||
Sbjct: 215500234 gatcgcaaaatctggatgaataaggcagcagcagcactggaagccaaatcaggtg---ag 215500290
Query: 1160 ggggttccagacaagaagcccgtggtagagaagaaaggaaagaaggctattggcaagaag 1219
| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 215500291 gaggttccagacaataagcctgtggtagagaagaaaggaaagaaggctattggcaagaag 215500350
Query: 1220 gctgttggcgttaaaaagcagaagaagcctttggtggggaaaaaggctgtagtgacc 1276
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215500351 gctgttggcgttaagaagcagaagaagcctttggtggggaaaaaggctgtagtgacc 215500407
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 67 ggcgtgtgctcgtccactgatatcagtgtactcagaaaaaggggagtcatctggcaaaaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182229858 ggcgtgtgctcgtccactgatatcagtgtactcagaaaaaggggagtcatctggcaaaaa 182229799
Query: 127 tgtcactttgcctgctgtgttcaaggctcccattcgaccagacatcgtgaactttgttca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182229798 tgtcactttgcctgctgtgttcaaggctcccattcgaccagacatcgtgaactttgttca 182229739
Query: 187 caccaacctgcgcaaaaacaacagacagccatatgctgtcagtgaattagcaggt 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182229738 caccaacctgcgcaaaaacaacagacagccatatgctgtcagtgaattagcaggt 182229684
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1103 cacaaaatccggatggataaggcggcagcagcactgaaagccaaatcaggtgagaagggg 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182226700 cacaaaatccggatggataaggcggcagcagcactgaaagccaaatcaggtgagaagggg 182226641
Query: 1163 gttccagacaagaagcccgtggtagagaagaaaggaaagaaggctattggcaagaaggct 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182226640 gttccagacaagaagcccgtggtagagaagaaaggaaagaaggctattggcaagaaggct 182226581
Query: 1223 gttggcgttaaaaagcagaagaagcctttggtggggaaaaaggctgtagtgacc 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182226580 gttggcgttaaaaagcagaagaagcctttggtggggaaaaaggctgtagtgacc 182226527
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 740 ggaattactctgcttaacgtaagcaaactgaacattttgaaacttgctcctggtgggcat 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182227519 ggaattactctgcttaacgtaagcaaactgaacattttgaaacttgctcctggtgggcat 182227460
Query: 800 gtgggacgtttctgcatttggactgaaagtgctttccgcaagttagatgagctctatggc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182227459 gtgggacgtttctgcatttggactgaaagtgctttccgcaagttagatgagctctatggc 182227400
Query: 860 acttggcgtaaagctgctaccctcaagagtaactacaa 897
||||||||||||||||||||||||||||||||||||||
Sbjct: 182227399 acttggcgtaaagctgctaccctcaagagtaactacaa 182227362
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 347 atgtgtcgtgggggccgcatgtttgcgccaaccaagacctggcgacgttggcatcgcaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182228823 atgtgtcgtgggggccgcatgtttgcgccaaccaagacctggcgacgttggcatcgcaga 182228764
Query: 407 gtgaacacaacacagaagcgatatgccatctgctctgcactggctgcctcagccttacca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182228763 gtgaacacaacacagaagcgatatgccatctgctctgcactggctgcctcagccttacca 182228704
Query: 467 gcgctggtcatgtctaaaggt 487
|||||||||||||||||||||
Sbjct: 182228703 gcgctggtcatgtctaaaggt 182228683
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 609 aggtttatgcctctcagcgaatgagagctggtaaaggcaaaatgagaaaccgtcgccgaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182227894 aggtttatgcctctcagcgaatgagagctggtaaaggcaaaatgagaaaccgtcgccgaa 182227835
Query: 669 tccagcgcaggggaccctgcatcatctataatgaggacaatggtatcatcaaagccttca 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182227834 tccagcgcaggggaccctgcatcatctataatgaggacaatggtatcatcaaagccttca 182227775
Query: 729 gaaacatccctgg 741
|||||||||||||
Sbjct: 182227774 gaaacatccctgg 182227762
Score = 242 bits (122), Expect = 5e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 981 gcaagaagattcatcgtagagttctgaagaagaatccactgaaaaacctgagaatcatgt 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182226909 gcaagaagattcatcgtagagttctgaagaagaatccactgaaaaacctgagaatcatgt 182226850
Query: 1041 tgaagctaaacccgtatgcaaagacaatgcgccgaaacaccattcttcgccaggccagga 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182226849 tgaagctaaacccgtatgcaaagacaatgcgccgaaacaccattcttcgccaggccagga 182226790
Query: 1101 at 1102
||
Sbjct: 182226789 at 182226788
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 237 caggtcatcaaaccagtgctgagtcttggggtactggcagagctgtggctcgaattccca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182229508 caggtcatcaaaccagtgctgagtcttggggtactggcagagctgtggctcgaattccca 182229449
Query: 297 gggttcgaggtggtgggactcaccgttctggccagggtgcttttggaaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182229448 gggttcgaggtggtgggactcaccgttctggccagggtgcttttggaaat 182229399
Score = 214 bits (108), Expect = 1e-52
Identities = 122/129 (94%)
Strand = Plus / Minus
Query: 484 aggtcatcggattgaggaagttcctgaacttcctttggtggttgaagataaagttgaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182228287 aggtcatcggattgaggaagttcctgaacttcctttggtggttgaagataaagttgaaag 182228228
Query: 544 ctacnnnnnnnccaaggaggctgttctgcttctgaagaagcttaaggcctggaatgatat 603
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182228227 ctacaaaaaaaccaaggaggctgttctgcttctgaagaagcttaaggcctggaatgatat 182228168
Query: 604 caagaaggt 612
|||||||||
Sbjct: 182228167 caagaaggt 182228159
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1337 gctgttgcataaacttaaatttgtttagtccataaaagtcaaatcacttggacagctaat 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182226466 gctgttgcataaacttaaatttgtttagtccataaaagtcaaatcacttggacagctaat 182226407
Query: 1397 tttgaataaagacctgatcaaagcagcagtgtgaaacat 1435
|||||||||||||||||||||||||||||||||||||||
Sbjct: 182226406 tttgaataaagacctgatcaaagcagcagtgtgaaacat 182226368
Score = 151 bits (76), Expect = 1e-33
Identities = 83/84 (98%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 898 ccttcccatgcataagatgctcaatacagaccttagcagaatcttgaaaagcccagagat 957
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 182227089 ccttcccatgcataagatgctcaatacagaccttagcagaatc-tgaaaagcccagagat 182227031
Query: 958 ccaaagagccctccgcgcaccacg 981
||||||||||||||||||||||||
Sbjct: 182227030 ccaaagagccctccgcgcaccacg 182227007
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 14 cctgtgggagccgccgggttgagaggagcgtggccttctcctctccccaccatgg 68
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182231625 cctgtgggagccgccgggttgagaggagcgtggccttctcctctccccaccatgg 182231571
Score = 81.8 bits (41), Expect = 1e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 347 atgtgtcgtgggggccgcatgtttgcgccaaccaagacctggcgacgttggcatcgcaga 406
|||||||||||||||| |||||||||||||||||||| ||||||| ||| | | ||||||
Sbjct: 182230857 atgtgtcgtgggggcctcatgtttgcgccaaccaagatctggcgatgttagtaccgcaga 182230798
Query: 407 gtgaa 411
|||||
Sbjct: 182230797 gtgaa 182230793
Score = 79.8 bits (40), Expect = 4e-12
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1342 tgcataaacttaaatttgtttagtccataaaagtcaaatcactt-ggacagctaattttg 1400
||||||||||||||||| || | |||||||| || |||||| || |||||||||||||||
Sbjct: 215500473 tgcataaacttaaatttattaattccataaaggttaaatcattttggacagctaattttg 215500532
Query: 1401 aataaagacctgatca 1416
|||||||||| |||||
Sbjct: 215500533 aataaagaccagatca 215500548
Score = 65.9 bits (33), Expect = 6e-08
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 1379 atcacttggacagctaattttgaataaagacctgatcaaag 1419
|||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 109903525 atcatttggacagctaattttgaacaaagacctgatcaaag 109903485
Score = 61.9 bits (31), Expect = 9e-07
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 1172 aagaagcccgtggtagagaagaaaggaaagaaggctattggca 1214
|||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct: 109903722 aagaagcctgtggtagagaagaaaggaaagaaagctgttggca 109903680
>Sscrofa_Chr02
|| Length = 162569375
Score = 696 bits (351), Expect = 0.0
Identities = 978/1186 (82%), Gaps = 40/1186 (3%)
Strand = Plus / Minus
Query: 36 gaggagcgtggccttctcctctccccaccatggcgtgtgctcgtccactgatatcagtgt 95
|||||| ||||||||||||||||| | |||| | ||| || | ||||||||||||||||
Sbjct: 44065370 gaggagtgtggccttctcctctcctcgccatagtgtgggcctgcccactgatatcagtgt 44065311
Query: 96 actcagaaaaaggggagtcatctggcaaaaatgtcactttgcctgctgtgttcaaggctc 155
|| | ||| | | || |||| | ||||||| |||| ||||| | |||||||||||||
Sbjct: 44065310 accctgaagaggagggatcattgcgtaaaaatggcactgtgccttccgtgttcaaggctc 44065251
Query: 156 ccattcgaccagacatcgtgaactttgttcacaccaacctgcgcaaaaacaacagacagc 215
|| || |||||| || ||||||||||||| ||||||| || |||||||||||||| |||
Sbjct: 44065250 ccttttgaccagctatggtgaactttgttcccaccaacttgtgcaaaaacaacaga-agc 44065192
Query: 216 catatgctgtcagtgaattagcaggtcatcaaaccagtgctgagtcttggggtactggca 275
| || ||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 44065191 cctagactgtcagtgaattagcaggtcatcaaaccagcgctgagtcttaggctactggca 44065132
Query: 276 gagctgtggctcgaattcccagggttcgaggtggtgggactcaccgttctggccagggtg 335
|||||| || || || |||||||||| ||||||| ||| | ||| | |||||||| |||
Sbjct: 44065131 gagctggggttcaaactcccagggtttgaggtggcaggatt-accatgctggccagagtg 44065073
Query: 336 cttttggaaatatgtgtcgtgggggccgcatgtttgcgccaaccaagacctggcgacgtt 395
|||||||||||| || || || |||||||||||||| |||||||||||||||||||| |
Sbjct: 44065072 cttttggaaataggtatcatgcgggccgcatgtttgtgccaaccaagacctggcgacact 44065013
Query: 396 ggcatcgcagagtgaacacaacacagaagcgatatgccatctgctctgcactggctgcct 455
|||| | |||||||||||||| |||||| |||||||| |||||||| | |||||||||
Sbjct: 44065012 ggcacctcagagtgaacacaatgcagaagagatatgccgtctgctctaccttggctgcct 44064953
Query: 456 cagccttaccagcgctggtcatgtctaaaggtcatcggattgaggaagttcctgaacttc 515
||||||| | | ||| ||| |||||| ||||||||||||| ||||||||
Sbjct: 44064952 tggccttacga----------tatctgaagttcatcgtattgaggaagttcttgaacttc 44064903
Query: 516 ctttggtggttgaagataaagttgaaagctacnnnnnnnccaaggaggctgttctgcttc 575
|||||||||| ||||||||||||||| |||| |||||||||||||| ||| ||
Sbjct: 44064902 ctttggtggtggaagataaagttgaagactacaagaagaccaaggaggctgttttgcgtc 44064843
Query: 576 tgaagaagcttaaggcctggaatgatatcaagaaggtttatgcctctcagcgaatgagag 635
||||||| || ||||| ||||||||||||| ||| |||| |||||||| |||||||||
Sbjct: 44064842 tgaagaaactggaggccaggaatgatatcaaaaagttttacacctctcagtgaatgagag 44064783
Query: 636 ctggtaaaggcaaaatgagaaaccgtcgccgaatccagcgcaggggaccctgcatcatct 695
|||| | || | | ||||||||| | |||| || ||| ||||| ||||||||| |||
Sbjct: 44064782 ctggcagagaccagatgagaaactgatgccgtatggagcacagggacccctgcatcgtct 44064723
Query: 696 ataatgaggacaatggtatcatcaaagccttcagaaacatccctggaattactctg-ctt 754
||||||||||||| ||||||||||| |||||||||||||||||||||||| | ||| |||
Sbjct: 44064722 ataatgaggacaa-ggtatcatcaaggccttcagaaacatccctggaattgc-ctgactt 44064665
Query: 755 aacgtaagcaaactgaacattttgaaacttgctcctggtgggcatgtgggacgtttctgc 814
|| ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct: 44064664 aatgtaagcaaactgaacattttgaaacttgctcctggtgggtacgtgggacatttctgc 44064605
Query: 815 atttggactgaaagtgctttccgcaagttagatgagctctatggcacttggcgtaaagct 874
|||||||||||||||||||||||| |||||| |||||| |||||||| | |||| | |
Sbjct: 44064604 ctttggactgaaagtgctttccgcatgttagacaagctctgtggcacttagtgtaacgtt 44064545
Query: 875 gctaccctcaagagtaactacaaccttcccatgcataagatgctcaatacagaccttagc 934
|| ||||||||||||||||||| || | || || ||||||||||| ||||||||||||
Sbjct: 44064544 gcctccctcaagagtaactacaagctcctca--cacaagatgctcaacacagaccttagc 44064487
Query: 935 agaatcttgaaaagcccagagatccaaagag-------------------ccctccgc-- 973
|||||| ||||||||||||||| |||||||| |||||| |
Sbjct: 44064486 agaatcatgaaaagcccagagagccaaagagccctgccccctgacaccccccctcccctg 44064427
Query: 974 -gcaccacgcaagaagattcatcgtagagttctgaagaagaatccactgaaaaacctgag 1032
|||||| ||||||||||||||| || || |||| |||||| |||||||||| ||||||
Sbjct: 44064426 agcaccaagcaagaagattcatcacagcgtcctgaggaagaagccactgaaaaccctgag 44064367
Query: 1033 aatcatgttgaagctaaacccgtatgcaaagacaatgcgccgaaacaccattcttcgcca 1092
||| || ||||||||||||| |||||||||| | | ||| ||||||||||| | |||
Sbjct: 44064366 aattat-ttgaagctaaacctgtatgcaaagcccacatgccagaacaccattctgcacca 44064308
Query: 1093 ggccaggaatcacaaaatccggatggataaggcggcagcagcactgaaagccaaatcagg 1152
||||| || |||||||||| |||||||||||| || |||||||| | ||||||||||
Sbjct: 44064307 ggccaagatccacaaaatcctgatggataaggcagccacagcactggaggccaaatcaga 44064248
Query: 1153 tgagaagggggttccagacaagaagcccgtggtagagaagaaagga 1198
||||||||||||||||| ||||||||| |||||| |||||||||
Sbjct: 44064247 tgagaagggggttccaggcaagaagcctctggtaggaaagaaagga 44064202
>Sscrofa_Chr06
|| Length = 157765593
Score = 400 bits (202), Expect = e-109
Identities = 607/736 (82%), Gaps = 8/736 (1%)
Strand = Plus / Minus
Query: 331 gggtgcttttggaaatatgtgtcgtgggggccgcatgtttgcgccaaccaagacctggcg 390
||||||||||||||||||| || |||||| |||||| ||| |||| |||||||
Sbjct: 113626512 gggtgcttttggaaatatgcatcaagggggctgcatgtctgcaccaattggaacctggca 113626453
Query: 391 acgttggcatcgcagagtgaacacaacacagaagcgatatgccatctgctctgcactggc 450
| ||||||| | |||| ||||||||| ||||| | |||| |||| ||||||||| ||||
Sbjct: 113626452 atgttggcaccacagaatgaacacaatacaga-gtgatacgccacctgctctgccttggc 113626394
Query: 451 tgcctcagccttaccagcgctggtcatgtctaaaggtcatcggattgaggaagttcctga 510
||| | ||||||||||| ||| | |||||||||||||| |||| |||||||||| |
Sbjct: 113626393 tgctttggccttaccagcactgattatgtctaaaggtcactatattggggaagttcctaa 113626334
Query: 511 acttcctttggtggttgaagataaagttgaaag-ctacnnnnnnnccaaggaggctgttc 569
|| |||||| || |||||||||||| | |||| |||| ||||| |||||||||
Sbjct: 113626333 acatccttttgtagttgaagataaaagtcaaaggctacaaga---ccaagcaggctgttc 113626277
Query: 570 tgcttctgaagaagcttaaggcctggaatgatatcaagaaggtttatgcctctcagcgaa 629
|||||| ||||| ||||||||||||||||||||| |||| | |||||||| || |
Sbjct: 113626276 tgcttcctaagaaatttaaggcctggaatgatatca-gaag-tctatgcctcatagaaga 113626219
Query: 630 tgagagctggtaaaggcaaaatgagaaaccgtcgccgaatccagcgcaggggaccctgca 689
||| |||||| ||||||||||||||||| || | |||||| | ||| || ||||||
Sbjct: 113626218 tgatagctggcaaaggcaaaatgagaaaatgttatcatatccagtgtaggagagcctgca 113626159
Query: 690 tcatctataatgaggacaatggtatcatcaaagccttcagaaacatccctggaattactc 749
|||||||||||||||||||||||||||| | | ||| |||||||| |||| ||||||||
Sbjct: 113626158 tcatctataatgaggacaatggtatcattgaggtcttgagaaacattcctgaaattactc 113626099
Query: 750 tgcttaacgtaagcaaactgaacattttgaaacttgctcctggtgggcatgtgggacgtt 809
||||||| |||||||||| ||| ||||||||||| |||||| || ||||||||||| ||
Sbjct: 113626098 tgcttaatataagcaaactaaactttttgaaacttactcctgatgagcatgtgggacatt 113626039
Query: 810 tctgcatttggactgaaagtgctttccgcaagttagatgagctctatggcacttggcgta 869
| || |||||||||| || || ||||| |||||||||||| || |||||| |||| ||
Sbjct: 113626038 tttgtatttggactggaaatgttttcctcaagttagatgatctacatggcagttggtgtg 113625979
Query: 870 aagctgctaccctcaagagtaactacaaccttcccatgcataagatgctcaatacagacc 929
||||||| || ||||||||||||||||| ||||||| ||||||||||||| ||||||
Sbjct: 113625978 aagctgcctccttcaagagtaactacaacattcccatttctaagatgctcaat-cagacc 113625920
Query: 930 ttagcagaatcttgaaaagcccagagatccaaagagccctccgcgcaccacgcaagaaga 989
|||||||||||||| |||||||||| ||| |||||||||||| | ||||| ||||||||
Sbjct: 113625919 ttagcagaatcttggaaagcccagaaatcgaaagagccctccaagtaccacacaagaaga 113625860
Query: 990 ttcatcgtagagttctgaagaagaatccactgaaaaacctgagaatcatgttgaagctaa 1049
|||||| ||||| || |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 113625859 ttcatcacagagtcttggagaagaatccactgaaaaccctgagaatcacactgaagctaa 113625800
Query: 1050 acccgtatgcaaagac 1065
|| | |||||||||||
Sbjct: 113625799 actcatatgcaaagac 113625784
Score = 91.7 bits (46), Expect = 1e-15
Identities = 82/94 (87%)
Strand = Plus / Minus
Query: 173 gtgaactttgttcacaccaacctgcgcaaaaacaacagacagccatatgctgtcagtgaa 232
||||||| ||||||||| || ||| |||||||||||||||||| ||| || ||| |||
Sbjct: 113626649 gtgaactctgttcacactaagttgcacaaaaacaacagacagccctatactatcaaagaa 113626590
Query: 233 ttagcaggtcatcaaaccagtgctgagtcttggg 266
|||||||||||||||||||| ||||||||||||
Sbjct: 113626589 ttagcaggtcatcaaaccagctctgagtcttggg 113626556
>Sscrofa_Chr03
|| Length = 144787322
Score = 317 bits (160), Expect = 1e-83
Identities = 275/311 (88%), Gaps = 3/311 (0%)
Strand = Plus / Minus
Query: 34 gagaggagcgtggccttctcctctccccaccatggcgtgtgctcgtccactgatatcagt 93
||||| |||||||||||||||| || ||||| ||| |||| || || ||||||| |||
Sbjct: 77748548 gagagaagcgtggccttctcctgtcaccaccgtggtgtgt--tcatctactgatagtagt 77748491
Query: 94 gtactcagaaaaaggggagtcatctggcaaaaa-tgtcactttgcctgctgtgttcaagg 152
|||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 77748490 gtactctgaaaagggggagtcatctggcaaaaaatatcactttgcctgctgtgttcaagg 77748431
Query: 153 ctcccattcgaccagacatcgtgaactttgttcacaccaacctgcgcaaaaacaacagac 212
|||||||||||||||| | ||||| ||||||||||||||| || |||||||||||||||
Sbjct: 77748430 ctcccattcgaccagatacagtgaaatttgttcacaccaacttgtgcaaaaacaacagac 77748371
Query: 213 agccatatgctgtcagtgaattagcaggtcatcaaaccagtgctgagtcttggggtactg 272
|||| ||||||| ||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 77748370 agccctatgctgccagtgaattagcaggtcatcaaacccacgctgaatcttggggtacca 77748311
Query: 273 gcagagctgtggctcgaattcccagggttcgaggtggtgggactcaccgttctggccagg 332
|||||||||||||| |||||||||||||| ||||||| ||||||| | |||||||||||
Sbjct: 77748310 gcagagctgtggcttgaattcccagggtttgaggtggcgggactcgctgttctggccagc 77748251
Query: 333 gtgcttttgga 343
||||||||||
Sbjct: 77748250 ttgcttttgga 77748240
>Sscrofa_Chr08
|| Length = 148491826
Score = 176 bits (89), Expect = 2e-41
Identities = 122/134 (91%), Gaps = 1/134 (0%)
Strand = Plus / Plus
Query: 487 tcatcggattgaggaagttcctgaacttcctttggtggttgaagataaagttgaaagcta 546
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 46056192 tcatgggattgaggaagttcctgaacttcctttggtggttgaagataaagttgaaagcca 46056251
Query: 547 cnnnnnnn-ccaaggaggctgttctgcttctgaagaagcttaaggcctggaatgatatca 605
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46056252 caaaaaagtccaaggaggctgttctgcttctgaagaagcttaaggcctggaatgatatca 46056311
Query: 606 agaaggtttatgcc 619
| ||||| ||||||
Sbjct: 46056312 aaaaggtctatgcc 46056325
Score = 103 bits (52), Expect = 3e-19
Identities = 111/134 (82%), Gaps = 15/134 (11%)
Strand = Plus / Plus
Query: 1142 gccaaatcaggtgagaagggggttccagacaagaagcccgtggtagagaagaaaggaaag 1201
|||||||||||||||||||| |||||| |||||||| || |||||||||||||||||
Sbjct: 46056323 gccaaatcaggtgagaagggagttccaaacaagaaggccctggtagagaagaaagga--- 46056379
Query: 1202 aaggctattggcaagaaggctgttggcgttaaaaagcagaagaagcctttggtggggaaa 1261
|||||||||||||| |||| |||||||||||||||||||| ||||||
Sbjct: 46056380 ------------aagaaggctgttggtgttaggaagcagaagaagcctttggtcgggaaa 46056427
Query: 1262 aaggctgtagtgac 1275
||||||||||||||
Sbjct: 46056428 aaggctgtagtgac 46056441
Score = 101 bits (51), Expect = 1e-18
Identities = 79/87 (90%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1337 gctgttgcataaacttaaatttgtttagtccataaaagtcaaatca-cttggacagctaa 1395
|||| |||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 46056503 gctgctgcataaacttaaatttgtttattccataaaggtcaaatcattttggacagctac 46056562
Query: 1396 ttttgaataaagacctgatcaaagcag 1422
||||||||||| ||||||||| |||||
Sbjct: 46056563 ttttgaataaatacctgatcagagcag 46056589
>Sscrofa_Chr14
|| Length = 153851969
Score = 157 bits (79), Expect = 2e-35
Identities = 209/252 (82%), Gaps = 2/252 (0%)
Strand = Plus / Minus
Query: 385 ctggcgacgttggcatcgcagagtgaacacaacacagaagcgatatgccatctgctctgc 444
|||||| ||||||| ||||||||| |||||||||||| |||| |||||| ||||||||
Sbjct: 62311911 ctggcgccgttggcccagcagagtgatcacaacacagaaacgatgtgccatttgctctgc 62311852
Query: 445 actggctgcctcagccttaccagcgctggtcatgtctaaaggtcatcggattgaggaagt 504
|||||||| || |||||| |||||||||||| |||||||||| | ||||||||||
Sbjct: 62311851 cctggctgcttcggccttaggggcgctggtcatggctaaaggtcagtgtattgaggaag- 62311793
Query: 505 tcctgaacttcctttggtggttgaagataaagttgaaagctac-nnnnnnnccaaggagg 563
||||||||||||||||||||||| |||||| ||||| ||||| | |||| |
Sbjct: 62311792 tcctgaacttcctttggtggttgtagataacattgaaggctactgagaagacgaagggga 62311733
Query: 564 ctgttctgcttctgaagaagcttaaggcctggaatgatatcaagaaggtttatgcctctc 623
||||| ||||||| ||||| ||||||||||||||| ||||||| ||||| | ||| |||
Sbjct: 62311732 ctgttttgcttcttaagaaacttaaggcctggaataatatcaaaaaggtctctgcgtctg 62311673
Query: 624 agcgaatgagag 635
||||||||||||
Sbjct: 62311672 agcgaatgagag 62311661
>Sscrofa_Chr15
|| Length = 157681621
Score = 115 bits (58), Expect = 7e-23
Identities = 232/292 (79%), Gaps = 21/292 (7%)
Strand = Plus / Minus
Query: 760 aagcaaactgaacattttgaaacttgctcctggtgggcatgtgggacgtttctgcatttg 819
||||| |||||||||||||||||| ||||||||||| ||| | |||||||||||
Sbjct: 16485637 aagcacactgaacattttgaaact-gctcctggtggacatat-------ttctgcatttg 16485586
Query: 820 gactgaaagtgctttccgcaagttagatgagctctatggcacttggcgtaaagctgctac 879
|||| ||||||||||| |||||||||| | | |||| ||||||| |||||||||| |
Sbjct: 16485585 gacttcaagtgctttccacaagttagataatgtgtatgacacttggtgtaaagctgcctc 16485526
Query: 880 cctcaagagtaactacaaccttcccatgcataagatgctcaatacagaccttagcagaat 939
|||||||||| || || | ||| ||| |||||||||| |||||| ||
Sbjct: 16485525 cctcaagagtgac-------------tgtacaagttgcccaatacagactttagcaaaac 16485479
Query: 940 cttgaaaagcccagagatccaaagagccctccgcgcaccacgcaagaagattcatcgtag 999
||||||||||||| ||||||||||| ||||| | ||||| |||||||||| ||| ||
Sbjct: 16485478 cttgaaaagcccaaagatccaaagattcctccaagaaccacacaagaagattaatcacag 16485419
Query: 1000 agttctgaagaagaatccactgaaaaacctgagaatcatgttgaagctaaac 1051
| | | |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 16485418 actcccacagaagaatccactgaaaaacctaagaatcgtgttgaagctaaac 16485367
Score = 87.7 bits (44), Expect = 2e-14
Identities = 111/133 (83%), Gaps = 4/133 (3%)
Strand = Plus / Minus
Query: 406 agtgaacacaacacagaagcgatatgccatctgctctgcactggctgcctcagccttacc 465
||||||||||||||||||| ||| |||||| | || ||| ||| || ||||||| ||
Sbjct: 16486245 agtgaacacaacacagaagtgatgtgccattttctgtgccctgtct----cagccttgcc 16486190
Query: 466 agcgctggtcatgtctaaaggtcatcggattgaggaagttcctgaacttcctttggtggt 525
|| || ||| ||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct: 16486189 agaactagtcctgtctaaaggtcatcatattgaggaagtttctgaacttccattggtgaa 16486130
Query: 526 tgaagataaagtt 538
|||||||||||||
Sbjct: 16486129 tgaagataaagtt 16486117
>Sscrofa_Chr07
|| Length = 134764511
Score = 111 bits (56), Expect = 1e-21
Identities = 137/166 (82%), Gaps = 16/166 (9%)
Strand = Plus / Plus
Query: 1109 atccggatggataaggcggcagcagcactgaaagccaaatcaggtgagaagggggttcca 1168
||||||||||||||||| |||||||||||| |||||| ||||||||||||| | ||||||
Sbjct: 50923497 atccggatggataaggcagcagcagcactggaagccagatcaggtgagaagcgtgttcca 50923556
Query: 1169 gacaagaagcccgtggtagagaagaaaggaaagaaggctattggcaagaaggctgttggc 1228
|||||||||| | | | |||||||||||| ||||||||||||| |
Sbjct: 50923557 gacaagaagcttg-gatggagaagaaagga---------------aagaaggctgttgac 50923600
Query: 1229 gttaaaaagcagaagaagcctttggtggggaaaaaggctgtagtga 1274
|||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 50923601 attaagaagcagaaggagcctttggtggggaaaaaggctgtagtga 50923646
Score = 71.9 bits (36), Expect = 1e-09
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1345 ataaacttaaatttgtttagtccataaaagtcaaatcacttgg-acagctaattttgaat 1403
||||||| |||| | |||| |||||||| ||||||||| |||| |||||||||||||||
Sbjct: 50923702 ataaactgaaatatatttattccataaaggtcaaatcatttgggacagctaattttgaag 50923761
Query: 1404 aaagacctgatcaaag 1419
|||||||||| |||||
Sbjct: 50923762 aaagacctgagcaaag 50923777
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,813,325
Number of extensions: 361
Number of successful extensions: 361
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 40
Length of query: 1480
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1459
Effective length of database: 2,808,413,156
Effective search space: 4097474794604
Effective search space used: 4097474794604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)