Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001264
(1823 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 507 e-143
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 505 e-143
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 501 e-142
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 498 e-141
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 498 e-141
Alignment gi|NP_001099121.1| BOLA class I histocompatibility antigen, alp... 496 e-140
Alignment gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ... 489 e-138
Alignment gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur... 487 e-137
Alignment gi|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus]. 487 e-137
Alignment gi|NP_001108327.1| major histocompatibility complex, class I, A... 480 e-135
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 507 bits (1305), Expect = e-143
Identities = 246/333 (73%), Positives = 268/333 (80%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP FI VGYVDDTQFVRFDSDA +PR+EPRA W+E+EG EYWD+
Sbjct: 24 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYWDQ 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR+ +AQ FR LN LRGYYNQSEAGSHTLQWMYGC +GPDG LLRG+ QFGY+G D
Sbjct: 84 ETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEGRD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAADTAAQISKRKWEAAD AER+R+YL+GTCVEWL +YLE GKDTL RA
Sbjct: 144 YIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLLRA 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP S VTLRCWALGFYP+EISLTWQR G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KW ALVVP GEEQ YTC VQHEGLQEPLTLRW+PPQ
Sbjct: 264 KWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQ-TSFLTMGIIVGLVLLVTGAVVAG 322
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
W KKRSGEKGG+Y QA+ SDSAQGSDVSLT
Sbjct: 323 FVIWMKKRSGEKGGNYIQASRSDSAQGSDVSLT 355
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 505 bits (1301), Expect = e-143
Identities = 248/359 (69%), Positives = 271/359 (75%)
Frame = +1
Query: 25 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRF 204
+R+MGP HS+ YFSTAVSRP GEP ++EVGYVDDTQFVRF
Sbjct: 1 MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60
Query: 205 DSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQ 384
DSDAPNPRMEPRA W+++EG EYWD ET+R G Q FR +LN LRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120
Query: 385 WMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAADAAERR 564
WM GC +GPDG L RG+ QFGYDG DYLALNEDLRSWTAADT AQISKRK EAA AAE
Sbjct: 121 WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180
Query: 565 RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 744
R Y++GTCVEWL++YLE GKDTL RA+PPK HVT HP SD VTLRCWALGFYPKEISLT
Sbjct: 181 RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240
Query: 745 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 924
WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300
Query: 925 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
PQ WRKK SGEKG +YTQA+ +DSAQGSDVSLT
Sbjct: 301 PQ--TPFLTVGIIVGLVLLVVAVVAGAVIWRKKCSGEKGRTYTQASSNDSAQGSDVSLT 357
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 501 bits (1291), Expect = e-142
Identities = 244/333 (73%), Positives = 263/333 (78%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF T VSRP GEP FI VGYVDDTQFVRFDSDA +PR EPR PW+E+EG EYWDR
Sbjct: 27 HSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYWDR 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR + AQTFR +LN L GYYNQSEAGSHTLQWMYGC + PDG LRGY Q YDG D
Sbjct: 87 ETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDGRD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALN+DLRSWTAADTAAQI+KRKWEAA AERRR+YL+G CVEWL++YLE GKDTL RA
Sbjct: 147 YIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLLRA 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVTRHPSSD VTLRCWALGFYP+EISLTWQ G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVP GEEQ YTC VQHEGL+EPLTLRW+PPQ
Sbjct: 267 KWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEPPQ--TSFLTMGIIVGLVVLVVAVVAG 324
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
WRKK SGEKG YTQAA SDSAQGSDVSLT
Sbjct: 325 AVIWRKKHSGEKGRIYTQAASSDSAQGSDVSLT 357
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 498 bits (1283), Expect = e-141
Identities = 244/359 (67%), Positives = 268/359 (74%)
Frame = +1
Query: 25 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRF 204
+R+MGP HSL YF TAVSRP GEP FI VGYVDDTQFVRF
Sbjct: 1 MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 205 DSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQ 384
DSDAPNPRMEPRA W+E+EG EYWDRETR AQ FR LN LRGYYNQSEAGSHTLQ
Sbjct: 61 DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120
Query: 385 WMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAADAAERR 564
MYGCY+GPDG L RG++Q+GYDG DYLALNEDLRSWTA +T AQISKRK EAA AE++
Sbjct: 121 LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180
Query: 565 RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 744
R+YL+G CVEWL++YLE GKDTL RA+PPK HVTRHP S VTLRCWALGFYP+EISLT
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240
Query: 745 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 924
WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300
Query: 925 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
PQ KKRSGEK G+Y QA+ SDSAQGSDVSLT
Sbjct: 301 PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQASSSDSAQGSDVSLT 359
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 498 bits (1281), Expect = e-141
Identities = 244/333 (73%), Positives = 263/333 (78%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YFSTAVSRP GEP FI VGYVDDTQF RFDSDAPNPR EPR PW+E+EG EYWDR
Sbjct: 24 HSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYWDR 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
TR AQTFR LN LRGYYNQSEAGSHTLQWM GC +GPDG LLRG+ QFGYDG +
Sbjct: 84 NTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDGRN 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAADTAAQI+KRKWEAA AAE R+Y++G CVE L++YLE GKD L RA
Sbjct: 144 YIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALLRA 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP S+ VTLRCWALGFYP+EISLTWQREG+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVP GEEQ YTC VQHEGLQEPLTLRW+PPQ
Sbjct: 264 KWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEPPQ--TSFLTMGIIVGLVLLVVAVVAG 321
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
WRKKRSGEKG YTQAA SDS QGSD+SLT
Sbjct: 322 AVIWRKKRSGEKGRIYTQAASSDSTQGSDMSLT 354
>ref|NP_001099121.1| BOLA class I histocompatibility antigen, alpha chain BL3-6 precursor
[Bos taurus].
Length = 360
Score = 496 bits (1278), Expect = e-140
Identities = 237/333 (71%), Positives = 262/333 (78%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YFSTAVSRP GEP ++EVGYVDDTQFVRFDSDA NPRMEPR W+++EG EYWDR
Sbjct: 24 HSMRYFSTAVSRPGFGEPRYLEVGYVDDTQFVRFDSDARNPRMEPRTRWVKQEGPEYWDR 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
TR GNAQ+FR LN LRGYYNQSEAGSHTLQWM GCY+GPDG LLRG+ Q+GYDG D
Sbjct: 84 NTRNAKGNAQSFRVGLNTLRGYYNQSEAGSHTLQWMSGCYVGPDGRLLRGFMQYGYDGRD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
YLALNEDLRSWTAADT AQI+KRKWEA AE +R+YL+G CVEWL++++E GKDTL RA
Sbjct: 144 YLALNEDLRSWTAADTEAQITKRKWEAEGYAEVQRNYLEGECVEWLRRHMENGKDTLLRA 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP SD VTLRCWALGFYP+EISLTWQ G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 204 DPPKAHVTHHPISDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVP GEEQ YTC VQHEGLQEPLTL+W+PPQ
Sbjct: 264 KWAALVVPSGEEQKYTCRVQHEGLQEPLTLKWEPPQPSFLTMGIIVGLVLLVVTGAVVAG 323
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
KK SGEK G+Y QA SDSAQGSDVSLT
Sbjct: 324 VVICMKKPSGEKRGTYIQALSSDSAQGSDVSLT 356
>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
Length = 398
Score = 489 bits (1259), Expect(2) = e-138
Identities = 243/343 (70%), Positives = 266/343 (77%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP FI VGYVDDT+FVRFDSDAP+PRMEPRA W+E+EG EYWD+
Sbjct: 52 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR+ AQTFR +LN+LRGYYNQSEAGSHTLQ MYGC +GPDG LLRGY Q+GYDG D
Sbjct: 112 ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAADTAAQISKRK EAA A R R YL G CVE L++YLE GK+TL RA
Sbjct: 172 YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP S VTLRCWALGFYP+EI LTWQ G+DQ+QDMELVETRP GDG FQ
Sbjct: 232 DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+PPQ
Sbjct: 292 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQ--TPFLTMGIIVGLVLLVVAVVAG 349
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV*DSCL 1131
WRKKRSGEKG +YTQA+ SDSAQGSDVSLT P+ C+
Sbjct: 350 AVIWRKKRSGEKGRTYTQASSSDSAQGSDVSLTV-PKAASECI 391
Score = 23.9 bits (50), Expect(2) = e-138
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 1196 VSAAAFECVCVPMSI 1240
V AA EC+C P+SI
Sbjct: 383 VPKAASECICAPISI 397
>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 487 bits (1254), Expect = e-137
Identities = 237/364 (65%), Positives = 264/364 (72%)
Frame = +1
Query: 7 SPPTRRLRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDD 186
SP TRR+R+MGP HSLSYF T VSRP GEP F VGYVDD
Sbjct: 69 SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128
Query: 187 TQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEA 366
TQF RFDSDAPNPRMEPRAPW+E+EG EYW+ TR Q R LN LRG+YNQSEA
Sbjct: 129 TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188
Query: 367 GSHTLQWMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAA 546
GSHTLQW++GC +GP+G LLRG Q YDGADYLALNEDLRSWTAA+T AQI+KRKWE +
Sbjct: 189 GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248
Query: 547 DAAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 726
AE +R+YL+ CV+WL ++LE GKDTL RA+PPKTHV HP SD VTLRCWALGFYP
Sbjct: 249 GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308
Query: 727 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 906
+EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309 EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368
Query: 907 TLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1086
+LRW PPQ WR K SG+ G YTQAA SDSAQGS
Sbjct: 369 SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAASSDSAQGS 428
Query: 1087 DVSL 1098
DVSL
Sbjct: 429 DVSL 432
>ref|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 487 bits (1254), Expect = e-137
Identities = 237/364 (65%), Positives = 264/364 (72%)
Frame = +1
Query: 7 SPPTRRLRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDD 186
SP TRR+R+MGP HSLSYF T VSRP GEP F VGYVDD
Sbjct: 69 SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128
Query: 187 TQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEA 366
TQF RFDSDAPNPRMEPRAPW+E+EG EYW+ TR Q R LN LRG+YNQSEA
Sbjct: 129 TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188
Query: 367 GSHTLQWMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAA 546
GSHTLQW++GC +GP+G LLRG Q YDGADYLALNEDLRSWTAA+T AQI+KRKWE +
Sbjct: 189 GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248
Query: 547 DAAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 726
AE +R+YL+ CV+WL ++LE GKDTL RA+PPKTHV HP SD VTLRCWALGFYP
Sbjct: 249 GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308
Query: 727 KEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 906
+EISLTWQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309 EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368
Query: 907 TLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1086
+LRW PPQ WR K SG+ G YTQAA SDSAQGS
Sbjct: 369 SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAASSDSAQGS 428
Query: 1087 DVSL 1098
DVSL
Sbjct: 429 DVSL 432
>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 363
Score = 480 bits (1235), Expect = e-135
Identities = 235/333 (70%), Positives = 257/333 (77%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP FI VGYVDDTQFVRFDSDAP+PR+EP A W+E+EG EYW +
Sbjct: 28 HSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYWHQ 87
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET+R AQ FR LN LRGYYNQSEAGSHT+Q MYGC +GPDGLL RGY QF YDG D
Sbjct: 88 ETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGLL-RGYDQFAYDGRD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAADTAAQ++K EAA A R R YL+G CVEWL++YL GKDTL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLLRA 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPKTHV HP SD VTLRCWALGFYP+EISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 207 DPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+PPQ
Sbjct: 267 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIPIMGIIVGLVHLMVTGAMVTG 326
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
WRKK SGEKG Y+QA+ SDS QGSDV LT
Sbjct: 327 AVIWRKKHSGEKGRIYSQASSSDSDQGSDVPLT 359
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 65,955,735
Number of extensions: 2086366
Number of successful extensions: 13238
Number of sequences better than 1.0e-05: 84
Number of HSP's gapped: 12927
Number of HSP's successfully gapped: 85
Length of query: 607
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,107,870
Effective search space: 7039827130
Effective search space used: 7039827130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001264
(1823 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 473 e-133
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 464 e-130
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 442 e-124
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 376 e-104
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 376 e-104
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 196 6e-50
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 142 1e-33
Alignment gi|NP_001014403.1| major histocompatibility complex, class II, ... 70 5e-12
Alignment gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote... 70 9e-12
Alignment gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote... 70 9e-12
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 473 bits (1216), Expect = e-133
Identities = 233/338 (68%), Positives = 260/338 (76%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF T+VSRP RG+P FI VGYVDDTQFVRFDSDA RMEPRAPW+E+EG EYWDR
Sbjct: 27 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYWDR 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR V AQ +R L+ LRGYYNQSEAGSHT Q MYGC LGP G LLRGYSQ YDGAD
Sbjct: 87 ETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDGAD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAADTAAQI++RKWEAA AE R+YL+ TCVEWL++YLEMGK+TL RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLLRA 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 EPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVIVSIAALVLLVVSGVIG 324
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 325 AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 464 bits (1194), Expect = e-130
Identities = 228/338 (67%), Positives = 258/338 (76%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF T+VSRP RG+P FI VGYVDDTQFVRFDSDA RMEPRAPW+E+EG EYWD
Sbjct: 24 HSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYWDP 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
+TR + A+TFR L+ LRGYYNQSEAGSHT QWM+GC LGP G LLRGYSQ YDGAD
Sbjct: 84 QTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDGAD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAAD AAQI++RK EAA A R+YL+ TCVEWL++YLEMGK+TL RA
Sbjct: 144 YIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLLRA 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
EPP T VTRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 204 EPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P
Sbjct: 264 KWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEP--SPLSTIVIVSIAALVLLVVAGVIG 321
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 322 AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 358
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 442 bits (1137), Expect = e-124
Identities = 215/338 (63%), Positives = 253/338 (74%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL +F TAVSRP RG+P +I VGYVDDTQF+RF+SDA +P++EPRA W+E+EG E+W+
Sbjct: 27 HSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFWEE 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
+T +AQT R +L GYYNQSEAGSHT QW GC +GPDG LLRGY QF YDGAD
Sbjct: 87 QTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDGAD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
YLAL+EDLRSWTAAD AAQI++RKWEAA AA+ R YLQG CV+ L KYLE GK+TLQ
Sbjct: 147 YLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQLT 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK ++TRHP SD VTLRCWALGFYP EI+LTWQR+G+DQ+QD E+V+TRP+GDGTFQ
Sbjct: 207 DPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P
Sbjct: 267 KWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEP--SPLSTIVIVSIAALVLLVVAGVIG 324
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 325 AVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 376 bits (966), Expect = e-104
Identities = 187/349 (53%), Positives = 231/349 (66%), Gaps = 5/349 (1%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL + +T VSRP GEP V YVDDT F RF+S+ R EP W+E+EG EYW+
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 283 ETRRVMGNAQTFRGSLNNL-RGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
T Q R +LN + + Y NQS GSHT Q + GC +GPDG LRGY + YDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ L+EDLRSW D AQI++RKW+AA AE R+++L+G C+EWL+++LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXXX 996
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ PPQ
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331
Query: 997 XXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTKDPRV*DSCLV 1134
WRKK SG KGGSY+QA G SAQ S +S+ P SCLV
Sbjct: 332 VGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLV 379
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 376 bits (966), Expect = e-104
Identities = 187/349 (53%), Positives = 231/349 (66%), Gaps = 5/349 (1%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL + +T VSRP GEP V YVDDT F RF+S+ R EP W+E+EG EYW+
Sbjct: 32 HSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYWEE 91
Query: 283 ETRRVMGNAQTFRGSLNNL-RGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
T Q R +LN + + Y NQS GSHT Q + GC +GPDG LRGY + YDG
Sbjct: 92 RTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYDGL 151
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ L+EDLRSW D AQI++RKW+AA AE R+++L+G C+EWL+++LE G++TLQR
Sbjct: 152 DYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETLQR 211
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
A+PPKT VTR P S+ VTL+CWALGFYP EI+LTWQR+G+DQ+QD ELVETRP GDGTF
Sbjct: 212 ADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDGTF 271
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PPQXXXXXXXXXXXXXXXXXXXXXX 996
QKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ PPQ
Sbjct: 272 QKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGAML 331
Query: 997 XXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTKDPRV*DSCLV 1134
WRKK SG KGGSY+QA G SAQ S +S+ P SCLV
Sbjct: 332 VGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLV 379
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 196 bits (498), Expect = 6e-50
Identities = 103/280 (36%), Positives = 154/280 (55%), Gaps = 3/280 (1%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
P+SLS+F T +SRP G P F Y++D F +DS+ + PR PW + EG E W+
Sbjct: 27 PYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSETG--KAIPRYPWSQMEGIEDWE 84
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
+E++ F +L ++ YY E GSHT Q M+GC L + + ++ YDG
Sbjct: 85 KESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDGR 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADA-AERRRSYLQGTCVEWLQKYLEMGKDTLQ 636
+++ N+++ +W D AA +K+KWEA + +R ++YL+ C LQ+YLE GK L
Sbjct: 143 NFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYLD 202
Query: 637 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 816
R EPP +T H + + TL+CW GFYP+EI L W + D + PSG+ T
Sbjct: 203 RQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNNT 261
Query: 817 FQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPPQ 930
+Q W + P + SY+C V+H L +PLT+ WD Q
Sbjct: 262 YQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQ 301
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 142 bits (358), Expect = 1e-33
Identities = 88/276 (31%), Positives = 136/276 (49%), Gaps = 2/276 (0%)
Frame = +1
Query: 106 SLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWI-EKEGQEYWDR 282
SL Y TAVS P G P F G++ Q++ +++ + EP W+ E + YW++
Sbjct: 28 SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET + F +L L + G +TLQ + GC LGPD + ++F +G D
Sbjct: 86 ETTDLRTKEGLFLEALKAL------GDGGPYTLQGLLGCELGPDNTSVP-VAKFALNGED 138
Query: 463 YLALNEDLRSWTAADTAAQ-ISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
++ + L +W + +SKR + A A + R++L +C + L +LE G+ L+
Sbjct: 139 FMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGRGNLEW 198
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
EPP + P S L C A FYP E+ L + R G + P+GDG+F
Sbjct: 199 KEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPNGDGSF 256
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 927
W++L V G+E Y C VQH GL +PLT+ + P
Sbjct: 257 HAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESP 292
>ref|NP_001014403.1| major histocompatibility complex, class II, DQ beta 1 [Canis lupus
familiaris].
Length = 269
Score = 70.5 bits (171), Expect = 5e-12
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 8/187 (4%)
Frame = +1
Query: 382 QWMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAA-DAAE 558
Q+ CY +R +++ Y+ +++ + D+ + A + W D +
Sbjct: 42 QYKAECYFTNGTERVRLLTKYIYNREEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMD 101
Query: 559 RRRSYLQGTCVEWLQKYLEMGKDTLQRAEPP-------KTHVTRHPSSDLGVTLRCWALG 717
R R+ L C Y TLQR P KT V H + L C
Sbjct: 102 RVRAELDTVC---RHNYGREELTTLQRRVEPTVTIFPSKTEVLNHHN-----LLVCSVTD 153
Query: 718 FYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQ 897
FYP +I + W R Q+Q+ + +GD TFQ L + P YTCHV+H LQ
Sbjct: 154 FYPGQIKVRWFRNDQEQTAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQ 213
Query: 898 EPLTLRW 918
P+T++W
Sbjct: 214 SPITVQW 220
>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 1 [Canis familiaris].
Length = 357
Score = 69.7 bits (169), Expect = 9e-12
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Frame = +1
Query: 379 LQWMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAA----DTAAQISKRKWEAA 546
+Q GC L G G+ ++ Y G D + SW + A Q S +
Sbjct: 114 VQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 170
Query: 547 DAAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 723
+ E + G C ++ L++GK LQR P+ ++ PS G + L C GFY
Sbjct: 171 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 230
Query: 724 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 900
PK + + W R G+ + Q + + P DGT+ +L V E +C V+H L +
Sbjct: 231 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 289
Query: 901 PLTLRWDPP 927
+ L W+ P
Sbjct: 290 DMVLHWEQP 298
>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 2 [Canis familiaris].
Length = 352
Score = 69.7 bits (169), Expect = 9e-12
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 6/189 (3%)
Frame = +1
Query: 379 LQWMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAA----DTAAQISKRKWEAA 546
+Q GC L G G+ ++ Y G D + SW + A Q S +
Sbjct: 109 VQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 165
Query: 547 DAAERRRSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 723
+ E + G C ++ L++GK LQR P+ ++ PS G + L C GFY
Sbjct: 166 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 225
Query: 724 PKEISLTWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 900
PK + + W R G+ + Q + + P DGT+ +L V E +C V+H L +
Sbjct: 226 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 284
Query: 901 PLTLRWDPP 927
+ L W+ P
Sbjct: 285 DMVLHWEQP 293
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 68,585,016
Number of extensions: 2074686
Number of successful extensions: 13860
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 13517
Number of HSP's successfully gapped: 28
Length of query: 607
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 498
Effective length of database: 15,240,880
Effective search space: 7589958240
Effective search space used: 7589958240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001264
(1823 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 477 e-134
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 473 e-133
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 473 e-133
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 470 e-132
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 468 e-131
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 460 e-129
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 446 e-125
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 417 e-116
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 416 e-116
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 249 6e-66
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 477 bits (1228), Expect = e-134
Identities = 233/335 (69%), Positives = 261/335 (77%), Gaps = 2/335 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YF T+VSRP RGEP FI VGYVDDTQFVRFDSDA +PR EPRAPWIE+EG EYWDR
Sbjct: 27 HSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYWDR 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
T+ AQT R SL NLRGYYNQSEAGSHTLQ MYGC +GPDG LLRG+ Q+ YDG D
Sbjct: 87 NTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAADTAAQI++RKWEAA AE+RR+YL+G CVEWL++YLE GKD L+RA
Sbjct: 147 YIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLERA 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPKTHVT HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GD TFQ
Sbjct: 207 DPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP--PQXXXXXXXXXXXXXXXXXXXXXX 996
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIGAV 326
Query: 997 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
R+K SG KGGSY+QAA SDSAQGSDVSLT
Sbjct: 327 VAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSLT 361
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 473 bits (1217), Expect = e-133
Identities = 230/335 (68%), Positives = 256/335 (76%), Gaps = 2/335 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YF T+VSRP RGEP FI VGYVDDTQFVRFDSDA + RMEPRAPWIE+EG EYWD+
Sbjct: 27 HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQ 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR V +QT R L LRGYYNQSEAGSHT+Q MYGC +G DG LRGY Q YDG D
Sbjct: 87 ETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAAD AAQI+KRKWEAA AE+ R+YL GTCVEWL++YLE GK+TLQR
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQRT 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPKTH+T HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 996
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAV 326
Query: 997 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
WR+K S KGGSYTQAA SDSAQGSDVSLT
Sbjct: 327 VAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLT 361
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 473 bits (1216), Expect = e-133
Identities = 236/361 (65%), Positives = 264/361 (73%), Gaps = 3/361 (0%)
Frame = +1
Query: 25 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRF 204
+R+M P HS+ YF TAVSRP RGEP FI VGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 205 DSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQ 384
DSDA +PR EPRAPW+E+EG EYWDRET+ AQ R SL NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 385 WMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAADAAERR 564
MYGC LGPDG LLRGY Q YDG DY+ALNEDLRSWTAADTAAQI++RK EAA AAE+
Sbjct: 121 RMYGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 565 RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 744
R+YL+GTCVEWL++YLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 745 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 924
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 925 ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1095
P R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360
Query: 1096 L 1098
L
Sbjct: 361 L 361
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 470 bits (1209), Expect = e-132
Identities = 235/361 (65%), Positives = 264/361 (73%), Gaps = 3/361 (0%)
Frame = +1
Query: 25 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRF 204
+R+M P HS+ YF TAVSRP RGEP FI VGYVDDTQFVRF
Sbjct: 1 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF 60
Query: 205 DSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQ 384
DSDA +PR EPRAPW+E+EG EYWDRET++ AQ R SL NLRGYYNQSE GSHTLQ
Sbjct: 61 DSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQ 120
Query: 385 WMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAADAAERR 564
M GC LGPDG LLRGY Q YDG DY+ALNEDLRSWTAADTAAQI++RK EAA AAE+
Sbjct: 121 RMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQL 180
Query: 565 RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 744
R+YL+GTCVEWL++YLE GK+TLQRAEPPKTHVT HP SD TLRCWALGFYP EI+LT
Sbjct: 181 RAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITLT 240
Query: 745 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 924
WQR+G+DQ+QD ELVETRP+GDGTFQKWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P
Sbjct: 241 WQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEP 300
Query: 925 ---PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1095
P R+K SG KGGS +QAA S+SAQGSD S
Sbjct: 301 SSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDES 360
Query: 1096 L 1098
L
Sbjct: 361 L 361
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 468 bits (1203), Expect = e-131
Identities = 226/335 (67%), Positives = 257/335 (76%), Gaps = 2/335 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YF T+VSRP RGEP FI VGYVDDTQFVRFDSDA + +MEPRAPWIE+EG EYWD+
Sbjct: 27 HSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYWDQ 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR + ++QT R +L LRGYYNQSE GSHT+Q MYGC +GPDG LRGY Q YDG D
Sbjct: 87 ETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDGKD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDLRSWTAAD AAQI+KRKWEA AAE+RR YL+G CV+ L++YLE GK+TLQR
Sbjct: 147 YIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQRT 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPKTH+T HP SD TLRCWALGFYP EI+LTWQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 996
KWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITGAV 326
Query: 997 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1101
WR+K S KGGSYTQAA SDSAQGSDVSLT
Sbjct: 327 VAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLT 361
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
sapiens].
Length = 358
Score = 460 bits (1183), Expect = e-129
Identities = 222/331 (67%), Positives = 246/331 (74%), Gaps = 2/331 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF T+VSRP RGEP FI VGYVDDTQFVRFD+DA +PRM PRAPW+E+EG EYWDR
Sbjct: 24 HSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYWDR 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR AQ FR +L LRGYYNQSEAGSHTLQWM+GC LGPDG LRGY QF YDG D
Sbjct: 84 ETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDGKD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
YL LNEDLRSWTA DTAAQIS++K A AE +R+YL+ TCVEWL KYLE GK+TL
Sbjct: 144 YLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLLHL 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
EPPKTHVT HP SD TLRCWALGFYP EI+LTWQ++G+ +QD ELVETRP+GDGTFQ
Sbjct: 204 EPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ--XXXXXXXXXXXXXXXXXXXXXX 996
KWAA+VVP GEEQ YTCHVQHEGL EP+TLRW P
Sbjct: 264 KWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSGAV 323
Query: 997 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSD 1089
WRKK SG KGGSY++A SDSAQGS+
Sbjct: 324 VAAVIWRKKSSGGKGGSYSKAEWSDSAQGSE 354
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 446 bits (1147), Expect = e-125
Identities = 208/272 (76%), Positives = 230/272 (84%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YFS AVSRP RGEP FI +GYVDDTQFVRFDSD+ PRMEPRAPW+E+EG EYW+
Sbjct: 27 HSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYWEE 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETR +AQT R +L LRGYYNQSEA SHTLQWM GC LG DG LLRGY Q+ YDG D
Sbjct: 87 ETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDGKD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
YLALNEDLRSWTAADTAAQISKRK EAA+ AE+RR+YL+GTCVEWL +YLE GK+ LQRA
Sbjct: 147 YLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQRA 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPKTHVT HP D TLRCWALGFYP EI LTWQR+G+DQ+QD+ELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRW 918
KWAA+VVP GEEQ YTCHVQHEGL EPL LRW
Sbjct: 267 KWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRW 298
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 417 bits (1073), Expect = e-116
Identities = 205/330 (62%), Positives = 237/330 (71%), Gaps = 2/330 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YFSTAVSRP RGEP +I V YVDDTQF+RFDSDA PRMEPR PW+E+EG +YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
T NAQT R +L NL YNQSEAGSHTLQ M GC +GPDG LLRGY Q YDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y++LNEDLRSWTAADT AQI++R +EA + AE R+YL+G C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 996
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323
Query: 997 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1086
WRKK S GSY+QAA G+
Sbjct: 324 VAAVMWRKKSSDRNRGSYSQAAAYSVVSGN 353
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 416 bits (1070), Expect = e-116
Identities = 204/322 (63%), Positives = 235/322 (72%), Gaps = 2/322 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YFSTAVSRP RGEP +I V YVDDTQF+RFDSDA PRMEPR PW+E+EG +YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
T NAQT R +L NL YNQSEAGSHTLQ M GC +GPDG LLRGY Q YDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y++LNEDLRSWTAADT AQI++R +EA + AE R+YL+G C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HV HP SD TLRCWALGFYP EI+LTWQR+G++Q+QD ELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PPQXXXXXXXXXXXXXXXXXXXXXX 996
KWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ P
Sbjct: 264 KWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAV 323
Query: 997 XXXXXWRKKRSGEKGGSYTQAA 1062
WRKK S GSY+QAA
Sbjct: 324 VAAVMWRKKSSDRNRGSYSQAA 345
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 249 bits (636), Expect = 6e-66
Identities = 122/181 (67%), Positives = 142/181 (78%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YFSTAVSRP RGEP +I V YVDDTQF+RFDSDA PRMEPR PW+E+EG +YW+
Sbjct: 24 HSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEW 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
T NAQT R +L NL YNQSEAGSHTLQ M GC +GPDG LLRGY Q YDG D
Sbjct: 84 TTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y++LNEDLRSWTAADT AQI++R +EA + AE R+YL+G C+E L++YLE GK+TLQRA
Sbjct: 144 YISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRA 203
Query: 643 E 645
E
Sbjct: 204 E 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 66,602,597
Number of extensions: 1973890
Number of successful extensions: 12913
Number of sequences better than 1.0e-05: 77
Number of HSP's gapped: 12619
Number of HSP's successfully gapped: 80
Length of query: 607
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 499
Effective length of database: 14,737,052
Effective search space: 7353788948
Effective search space used: 7353788948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001264
(1823 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 431 e-121
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 425 e-119
Alignment gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al... 422 e-118
Alignment gi|NP_001020379.1| MHC class I family member [Mus musculus]. 421 e-117
Alignment gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a... 419 e-117
Alignment gi|XP_003086974.1| PREDICTED: h-2 class I histocompatibility an... 419 e-117
Alignment gi|XP_003086973.1| PREDICTED: h-2 class I histocompatibility an... 419 e-117
Alignment gi|XP_003086972.1| PREDICTED: h-2 class I histocompatibility an... 419 e-117
Alignment gi|XP_003086969.1| PREDICTED: h-2 class I histocompatibility an... 419 e-117
Alignment gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph... 418 e-117
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 431 bits (1109), Expect = e-121
Identities = 195/275 (70%), Positives = 229/275 (83%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YF T+VSRP GEP FI VGYVDDTQFVRFDSDA PRMEPRAPW+E+EG EYW+R
Sbjct: 27 HSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYWER 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET+R GN Q+F SL L GYYNQSE+GSHT+QWMYGC +G DG LRGY Q+ YDG D
Sbjct: 87 ETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDGRD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTAAD AA I++RKWE A AAE R+YL+ CVEWL +YLE+GK+TL R
Sbjct: 147 YIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLLRT 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPKTHVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 207 DPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 927
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+PP
Sbjct: 267 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPP 301
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 425 bits (1093), Expect = e-119
Identities = 204/335 (60%), Positives = 244/335 (72%), Gaps = 2/335 (0%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHS+ YF TAVSRP GEP FI VGYVDDTQFVRFD DA NPRMEPRAPW+E+EG EYW+
Sbjct: 27 PHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYWE 86
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
RET+ G+ Q F+GSL NL YYNQS GSHT Q MYGC LG DG LLRGY QF YDG+
Sbjct: 87 RETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDGS 146
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ALN+DL++WTAAD AAQI++R+WE AE R+YL+ C+EWL++YLE+GK+TL R
Sbjct: 147 DYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLLR 206
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
+PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 207 TDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 266
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-PQXXXXXXXXXXXXXXXXXXXXXX 996
QKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P P
Sbjct: 267 QKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPRPSRDSNMVIIAVLVVLGVVIIIGA 326
Query: 997 XXXXXWRKKRS-GEKGGSYTQAAGSDSAQGSDVSL 1098
+ +R G K +Y A GS+S QGS + L
Sbjct: 327 MVPFVLKSRRKIGGKEENYALAGGSNSVQGSALFL 361
>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
[Mus musculus].
Length = 357
Score = 422 bits (1084), Expect = e-118
Identities = 196/276 (71%), Positives = 224/276 (81%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSL YF+TAVSRP GEP FI VGYVDDTQFVRFDSDA NPRMEPRA WIE+EG EYW+
Sbjct: 22 PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
RET + + FR +L L GYYNQS SHTLQWMYGC +GPDG LLRGY Q YDG
Sbjct: 82 RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY++LNEDLRSWTA D A+QISK K EA D A ++R+YLQG CVEWL +YL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
++PPK HVT HP S+ VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 927
QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+PP
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEPP 297
>ref|NP_001020379.1| MHC class I family member [Mus musculus].
Length = 382
Score = 421 bits (1082), Expect = e-117
Identities = 204/334 (61%), Positives = 239/334 (71%), Gaps = 2/334 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YF TAVSRP GEP FI VGYVDDTQFVRFD DA NPR EP APW+E+EG EYW+R
Sbjct: 24 HSMRYFETAVSRPGLGEPRFISVGYVDDTQFVRFDGDAENPRYEPWAPWMEQEGPEYWER 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET+ N Q+FRGSL NL YYNQSE GSHT Q + GC LG DG LLRGY QF Y+G D
Sbjct: 84 ETQIAKDNVQSFRGSLRNLLLYYNQSEGGSHTFQRLSGCDLGSDGRLLRGYLQFAYEGQD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTAAD AA I++RKWE A AAE ++YL+G CVEWL++YLE GK+TL R
Sbjct: 144 YIALNEDLKTWTAADMAALITRRKWEQAGAAELYKAYLEGECVEWLRRYLERGKETLLRT 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP + VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP--QXXXXXXXXXXXXXXXXXXXXXX 996
KWA++VVP G+EQ YTCHV HEGL EPLTLRW+PP
Sbjct: 264 KWASVVVPLGKEQKYTCHVHHEGLPEPLTLRWEPPPSTVSNMIIIEVLIVLGAVINIGAM 323
Query: 997 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1098
K++ G KGG Y A GS+S GS + L
Sbjct: 324 VAFVLKSKRKIGGKGGVYALAGGSNSIHGSALFL 357
>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
musculus].
Length = 334
Score = 419 bits (1078), Expect = e-117
Identities = 192/278 (69%), Positives = 229/278 (82%), Gaps = 3/278 (1%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP FI VGYVDDTQFVRFDSDA NPRMEPRA W+E+EG EYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET+ G+ Q+FRGSL + YYNQS+ GSHTLQWMYGC +G DG LLRGY QF Y+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTA D AAQI++RKWE A AE+ ++YL+GTC++ L++YLE+GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLELGKETLLRT 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTL---RWDPP 927
KWA++VVP G+EQ+YTCHV HEGL EPLTL RW+PP
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRWGRWEPP 301
>ref|XP_003086974.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 6 [Mus musculus].
Length = 361
Score = 419 bits (1077), Expect = e-117
Identities = 205/334 (61%), Positives = 240/334 (71%), Gaps = 2/334 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP ++EVGYVD+T+FVRFDSDA NPR EPRA WIE+EG EYW+R
Sbjct: 26 HSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWER 85
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETRR GN Q+FR L YYNQS GSHTLQWM GC + DG LLRGY QF YDG D
Sbjct: 86 ETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCD 145
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTAAD AAQI++RKWE A AAER R+YL+G CVEWL++YL+ G TL R
Sbjct: 146 YIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRT 205
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT H + VTLRCWALGFYP +I+LTWQ G++ +Q+MELVETRP+GDGTFQ
Sbjct: 206 DPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQ 265
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWA++VVP G+EQ YTCHV+HEGL EPLTLRW+PP
Sbjct: 266 KWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPPSSTKTNTVIIAVPVVLGAVVILGAV 325
Query: 1003 XXXWRKKR--SGEKGGSYTQAAGSDSAQGSDVSL 1098
K+R +G KGG Y A GS Q SD+SL
Sbjct: 326 MAFVMKRRRNTGGKGGDYALAPGS---QSSDMSL 356
>ref|XP_003086973.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 5 [Mus musculus].
Length = 371
Score = 419 bits (1077), Expect = e-117
Identities = 205/334 (61%), Positives = 240/334 (71%), Gaps = 2/334 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP ++EVGYVD+T+FVRFDSDA NPR EPRA WIE+EG EYW+R
Sbjct: 36 HSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWER 95
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETRR GN Q+FR L YYNQS GSHTLQWM GC + DG LLRGY QF YDG D
Sbjct: 96 ETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCD 155
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTAAD AAQI++RKWE A AAER R+YL+G CVEWL++YL+ G TL R
Sbjct: 156 YIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRT 215
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT H + VTLRCWALGFYP +I+LTWQ G++ +Q+MELVETRP+GDGTFQ
Sbjct: 216 DPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQ 275
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWA++VVP G+EQ YTCHV+HEGL EPLTLRW+PP
Sbjct: 276 KWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPPSSTKTNTVIIAVPVVLGAVVILGAV 335
Query: 1003 XXXWRKKR--SGEKGGSYTQAAGSDSAQGSDVSL 1098
K+R +G KGG Y A GS Q SD+SL
Sbjct: 336 MAFVMKRRRNTGGKGGDYALAPGS---QSSDMSL 366
>ref|XP_003086972.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 4 [Mus musculus].
Length = 376
Score = 419 bits (1077), Expect = e-117
Identities = 205/334 (61%), Positives = 240/334 (71%), Gaps = 2/334 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP ++EVGYVD+T+FVRFDSDA NPR EPRA WIE+EG EYW+R
Sbjct: 41 HSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWER 100
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETRR GN Q+FR L YYNQS GSHTLQWM GC + DG LLRGY QF YDG D
Sbjct: 101 ETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCD 160
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTAAD AAQI++RKWE A AAER R+YL+G CVEWL++YL+ G TL R
Sbjct: 161 YIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRT 220
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT H + VTLRCWALGFYP +I+LTWQ G++ +Q+MELVETRP+GDGTFQ
Sbjct: 221 DPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQ 280
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWA++VVP G+EQ YTCHV+HEGL EPLTLRW+PP
Sbjct: 281 KWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPPSSTKTNTVIIAVPVVLGAVVILGAV 340
Query: 1003 XXXWRKKR--SGEKGGSYTQAAGSDSAQGSDVSL 1098
K+R +G KGG Y A GS Q SD+SL
Sbjct: 341 MAFVMKRRRNTGGKGGDYALAPGS---QSSDMSL 371
>ref|XP_003086969.1| PREDICTED: h-2 class I histocompatibility antigen, D-P alpha
chain-like isoform 1 [Mus musculus].
Length = 362
Score = 419 bits (1077), Expect = e-117
Identities = 205/334 (61%), Positives = 240/334 (71%), Gaps = 2/334 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP ++EVGYVD+T+FVRFDSDA NPR EPRA WIE+EG EYW+R
Sbjct: 27 HSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWER 86
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ETRR GN Q+FR L YYNQS GSHTLQWM GC + DG LLRGY QF YDG D
Sbjct: 87 ETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDGCD 146
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTAAD AAQI++RKWE A AAER R+YL+G CVEWL++YL+ G TL R
Sbjct: 147 YIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLRT 206
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT H + VTLRCWALGFYP +I+LTWQ G++ +Q+MELVETRP+GDGTFQ
Sbjct: 207 DPPKAHVTHHRRPEGDVTLRCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQ 266
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWA++VVP G+EQ YTCHV+HEGL EPLTLRW+PP
Sbjct: 267 KWASVVVPLGKEQKYTCHVEHEGLPEPLTLRWEPPSSTKTNTVIIAVPVVLGAVVILGAV 326
Query: 1003 XXXWRKKR--SGEKGGSYTQAAGSDSAQGSDVSL 1098
K+R +G KGG Y A GS Q SD+SL
Sbjct: 327 MAFVMKRRRNTGGKGGDYALAPGS---QSSDMSL 357
>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
precursor [Mus musculus].
Length = 334
Score = 418 bits (1075), Expect = e-117
Identities = 191/278 (68%), Positives = 229/278 (82%), Gaps = 3/278 (1%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL YF TAVSRP GEP FI VGYVDDTQFVRFDSDA NPRMEPRA W+E+EG EYW+R
Sbjct: 24 HSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYWER 83
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET+ G+ Q+FRGSL + YYNQS+ GSHTLQWMYGC +G DG LLRGY QF Y+G D
Sbjct: 84 ETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEGRD 143
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ALNEDL++WTA D AAQI++RKWE A AE+ ++YL+GTC++ L++YL++GK+TL R
Sbjct: 144 YIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLLRT 203
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK HVT HP S VTLRCWALGFYP +I+LTWQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 204 DPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 263
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTL---RWDPP 927
KWA++VVP G+EQ+YTCHV HEGL EPLTL RW+PP
Sbjct: 264 KWASVVVPLGKEQNYTCHVNHEGLPEPLTLRWGRWEPP 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 55,661,539
Number of extensions: 1614024
Number of successful extensions: 9990
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 9727
Number of HSP's successfully gapped: 139
Length of query: 607
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 500
Effective length of database: 12,403,707
Effective search space: 6201853500
Effective search space used: 6201853500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001264
(1823 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 587 e-168
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 580 e-166
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 565 e-161
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 562 e-160
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 561 e-160
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 531 e-151
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 457 e-129
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 449 e-126
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 410 e-115
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 253 2e-67
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 587 bits (1513), Expect = e-168
Identities = 282/339 (83%), Positives = 293/339 (86%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSL YF TAVSRPDRG+P FI VGYVDDTQFVRFDSDAPNPRMEPRAPWIE+EGQEYWD
Sbjct: 23 PHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYWD 82
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
ETR MG+AQTFR +LNNLRGYYNQSEAGSHTLQ MYGC +GPD L LRGYSQ YDGA
Sbjct: 83 EETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDGA 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ALNEDLRSWTAADTAAQI+KRKWEAAD AE+ RSYL+G CVEWLQKYL+MG +TLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQR 202
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 999
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1000 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRKKR GEKGGSYTQAAGSDSAQGSDVSLTKDPRV
Sbjct: 323 GVVIWRKKRPGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 361
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 580 bits (1495), Expect = e-166
Identities = 285/364 (78%), Positives = 297/364 (81%)
Frame = +1
Query: 25 LRIMGPXXXXXXXXXXXXXXXXXXXPHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRF 204
+R+ GP PHSLSYF TAVSRPDRG+ FI VGYVDDTQFVRF
Sbjct: 1 MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60
Query: 205 DSDAPNPRMEPRAPWIEKEGQEYWDRETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQ 384
DSDAPNPRMEPRAPWI++EGQ+YWDRETR VMG+AQT R +L LRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120
Query: 385 WMYGCYLGPDGLLLRGYSQFGYDGADYLALNEDLRSWTAADTAAQISKRKWEAADAAERR 564
MYGC +GPDGLLLRGY Q YDGADY+ALNEDLRSWTAADTAAQI+KRKWEAADAAE
Sbjct: 121 VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180
Query: 565 RSYLQGTCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 744
RSYLQG CVE LQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT
Sbjct: 181 RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240
Query: 745 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 924
WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300
Query: 925 PQXXXXXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK 1104
PQ WRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK
Sbjct: 301 PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK 360
Query: 1105 DPRV 1116
DPRV
Sbjct: 361 DPRV 364
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 565 bits (1456), Expect = e-161
Identities = 275/339 (81%), Positives = 286/339 (84%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSLSYF TAVSRPDRG+ FI VGYVDDTQFVRFD+ APNPRMEPR PWI++EGQ+YWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYWD 82
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
ETR+V NAQT+ LN LRGYYNQSEAGSHTLQ M+GCYLGPDGLLL GY Q YDGA
Sbjct: 83 EETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDGA 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ALNEDLRSWTAAD AAQISKRKWEAADAAE RSYLQG CVE L++YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQR 202
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 999
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1000 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRK RSGEKGGSYTQAAGSDS QGSDVSLTKDPRV
Sbjct: 323 GVVIWRKTRSGEKGGSYTQAAGSDSDQGSDVSLTKDPRV 361
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 562 bits (1449), Expect = e-160
Identities = 276/339 (81%), Positives = 286/339 (84%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSLSYF TAVSRPD G+ FIEVGYVDDTQFVRFDSDA NPRMEPRAPWIEKEGQ+YWD
Sbjct: 23 PHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYWD 82
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
ETR+V AQ R L LRGYYNQSEAGSHTLQ M+GCYLGPDGLLLRGY Q YDGA
Sbjct: 83 EETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDGA 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ALNEDLRSWTAADTAAQI+KRKWEAAD AE+ RSYLQG CVE L++YLEMGKDTLQR
Sbjct: 143 DYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQR 202
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
A+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 ADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 999
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1000 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRKKRSGEKGGSYTQAAGSDS QGSDVSLTK PRV
Sbjct: 323 GVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 561 bits (1447), Expect = e-160
Identities = 276/339 (81%), Positives = 284/339 (83%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSLSYF TAVSRPDRG+ F VGYVDDTQFVRFDSDAPN +MEPRA WI++EG EYWD
Sbjct: 23 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYWD 82
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
RET+ AQT+R L LRGYYNQSEAGSHTLQ MYGCYLGPDGLLLRGY Q YDGA
Sbjct: 83 RETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDGA 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DYLALNEDLRSWTAADTAAQI+KRKWEAAD AE RSYLQG CVE L+KYLEMGKDTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQR 202
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 999
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVVA 322
Query: 1000 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WRKKRSGEKGGSYTQAAGSDS QGSDVSLTK PRV
Sbjct: 323 GVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 531 bits (1367), Expect = e-151
Identities = 263/339 (77%), Positives = 274/339 (80%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSLSY T+VSRP RGEP FI VG VDDT VRFDSDA PR EPRA WIE+EG EYWD
Sbjct: 23 PHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYWD 82
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
ETR NAQT RG+LN LRGYYNQSEA SHT+Q ++GC +GPD LLLR Y Q YDGA
Sbjct: 83 EETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDGA 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DYLALNEDLRSWTAADTAAQI+KRKWE A+ AE+ RSYLQG CVE LQKYLEMG+DTLQR
Sbjct: 143 DYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQR 202
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF
Sbjct: 203 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 262
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 999
QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q
Sbjct: 263 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQTPVPMVGIIVGLVLVLVAGAMVA 322
Query: 1000 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1116
WR KRSGEKGGSYTQAAGSDSAQGSDV L DPRV
Sbjct: 323 GVVIWRLKRSGEKGGSYTQAAGSDSAQGSDVFLPMDPRV 361
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 457 bits (1176), Expect = e-129
Identities = 223/331 (67%), Positives = 247/331 (74%)
Frame = +1
Query: 100 PHSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWD 279
PHSL YF TAVSRP R +P F VGYVDDTQFVRFDS+APNPR EPR PW+E EG E D
Sbjct: 23 PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82
Query: 280 RETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGA 459
R TR +Q F+ SLN LRGYYNQSEAGSHT QW+ GCY+ DG LLRGYSQF YDGA
Sbjct: 83 RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142
Query: 460 DYLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
DY+ LNEDLRSWTA AAQI++RKWE AE+ R+YL+ CV+ L +YL GK+TLQR
Sbjct: 143 DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
++PPKTHVTRHPSSD VTLRCWALGFYPKEISLTWQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203 SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXX 999
+KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQ
Sbjct: 263 RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVTGAVVT 322
Query: 1000 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDV 1092
WRKK SG K Y QA S ++ S V
Sbjct: 323 GVVIWRKKCSGGKVRKYQQAERSSRSENSGV 353
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 449 bits (1154), Expect = e-126
Identities = 215/331 (64%), Positives = 252/331 (76%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HS+ YF T VSRP GEP ++EVGYVDDTQFVRFDS+A NPRMEPRAPW+E+EGQEYWD
Sbjct: 22 HSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYWDE 81
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET+RV Q FR +L LRGYYNQSE GSHT Q YGC G G L + Q+ YDG D
Sbjct: 82 ETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDGED 141
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ LNEDL SWTAAD AA++++RKW+ + A ER +SYL+GTCVEWL++YLE G++ LQRA
Sbjct: 142 YITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQRA 201
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
+PPK +VT HPSSD VTLRCWALGFYPKEISLTW+REGQDQSQD+E+VETRPSGDGTFQ
Sbjct: 202 DPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGTFQ 261
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P +
Sbjct: 262 KWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR----LSAITIVGIVAGLVLLGAVI 317
Query: 1003 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1095
W+K+ SG K GSY+QA ++S + SDVS
Sbjct: 318 TVIWKKRFSGRKRGSYSQAPSNNSVENSDVS 348
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 410 bits (1055), Expect = e-115
Identities = 197/320 (61%), Positives = 230/320 (71%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL Y VSRP G + VG++DDTQFVRF SDA NPR+EPRAPW+E+EG+EYWDR
Sbjct: 52 HSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYWDR 111
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
+T +++ R +L + G +N S++ SH+ W+ GC +G +G +LRGY QF YDG D
Sbjct: 112 QTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDGDD 171
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADAAERRRSYLQGTCVEWLQKYLEMGKDTLQRA 642
Y+ LNEDLRSWTA T AQI +RKWEA AE+ R+YL+ CVEWL+KYLE GKD LQRA
Sbjct: 172 YIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQRA 231
Query: 643 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTFQ 822
PPKTHVTRHP D VTLRCWALGFYPKEISLTWQR+G+DQ+QDMELVETRPSGDGTFQ
Sbjct: 232 VPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGTFQ 291
Query: 823 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQXXXXXXXXXXXXXXXXXXXXXXXX 1002
KWAALVVP GEEQSYTC VQHEGLQEPLTLRW+PP
Sbjct: 292 KWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEPP---PLSLNLIMICIAVSVLVVTVLG 348
Query: 1003 XXXWRKKRSGEKGGSYTQAA 1062
WRK+ SG G+Y QAA
Sbjct: 349 TVIWRKRNSGGNRGNYVQAA 368
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 253 bits (646), Expect = 2e-67
Identities = 127/276 (46%), Positives = 174/276 (63%), Gaps = 1/276 (0%)
Frame = +1
Query: 103 HSLSYFSTAVSRPDRGEPCFIEVGYVDDTQFVRFDSDAPNPRMEPRAPWIEKEGQEYWDR 282
HSL Y A+S P G P F+ VGYVDD F+R+DS + EP+APW+ +YW++
Sbjct: 42 HSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYWEK 99
Query: 283 ETRRVMGNAQTFRGSLNNLRGYYNQSEAGSHTLQWMYGCYLGPDGLLLRGYSQFGYDGAD 462
ET++ A+ + + + GYYNQS +G H+ Q M+GC + DG G+ QFG+DG D
Sbjct: 100 ETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDGQD 157
Query: 463 YLALNEDLRSWTAADTAAQISKRKWEAADA-AERRRSYLQGTCVEWLQKYLEMGKDTLQR 639
+L+L+ + SW +A+ A +KR WE AE ++Y++G C+ L+KYLE+G R
Sbjct: 158 HLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRFSR 217
Query: 640 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGTF 819
EPP VT+H + D G TLRCWALGFYP++ISL+W ++ + E VETRPSGDGT+
Sbjct: 218 REPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDGTY 277
Query: 820 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPP 927
Q W A VP GEE YTCHVQH L LT+ W+ P
Sbjct: 278 QTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWESP 313
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,723,363
Number of extensions: 1503465
Number of successful extensions: 8441
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 8267
Number of HSP's successfully gapped: 39
Length of query: 607
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 502
Effective length of database: 8,729,747
Effective search space: 4382332994
Effective search space used: 4382332994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001264
(1823 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 537 e-150
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22 155 1e-34
gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 70 5e-09
>Sscrofa_Chr07
|| Length = 134764511
Score = 537 bits (271), Expect = e-150
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 537 bits (271), Expect = e-150
Identities = 277/279 (99%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 521 bits (263), Expect = e-145
Identities = 275/279 (98%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 513 bits (259), Expect = e-142
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
|||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 507 bits (256), Expect = e-141
Identities = 300/317 (94%)
Strand = Plus / Plus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacacagatttgttcacgtcccactttg 1172
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactgagtgacacagatttgttcacgtcccactttg 24604705
Query: 1173 tgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtcccta 1232
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24604706 tgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtcccta 24604765
Query: 1233 tgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcctc 1292
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24604766 tgagcatcctgagaggaggtggggaccctggcccagtcctgccccccacgtcccctcctc 24604825
Query: 1293 accctgacctgtgttctcttccctgatcctctttccagttccagcaggtnnnnnnnctgg 1352
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 24604826 accctgacctgtgttctcttccctgatcctctttccagttccagcaggtgggggggctgg 24604885
Query: 1353 gccatctccatccctgtcctaactctgtgttgcactggtaatgtcttaattttcctgttg 1412
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24604886 gccatcttcatccctgtcctaactctgtgttgcactggtaatgtcttaattttcctgttg 24604945
Query: 1413 gaaataaaatccaatat 1429
|||||||||||||||||
Sbjct: 24604946 gaaataaaatccaatat 24604962
Score = 498 bits (251), Expect = e-138
Identities = 273/279 (97%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 498 bits (251), Expect = e-138
Identities = 272/279 (97%)
Strand = Plus / Minus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 434 bits (219), Expect = e-119
Identities = 264/279 (94%)
Strand = Plus / Plus
Query: 641 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 700
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121
Query: 701 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 760
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181
Query: 761 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 820
||||||||||||| ||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241
Query: 821 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301
Query: 881 agcacgagggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||||||||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 406 bits (205), Expect = e-110
Identities = 259/277 (93%)
Strand = Plus / Minus
Query: 367 gggtctcacaccctccagtggatgtacggctgctacttgggaccagacgggctcctcctc 426
|||||||||||| ||||| | |||||||||||| || |||| ||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306
Query: 427 cgcgggtacagtcagtttggctacgacggcgccgattacctcgccctgaacgaggacctg 486
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246
Query: 487 cgctcctggaccgcggcggacacggcggctcagatctccaagcgcaagtgggaggcggcc 546
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186
Query: 547 gatgcggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 606
||||||||||||| | ||| ||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126
Query: 607 tacctggagatggggaaggacacgctgcagcgcgcag 643
||||||||||||||||| ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089
Score = 404 bits (204), Expect = e-110
Identities = 255/272 (93%)
Strand = Plus / Minus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949
Query: 277 gatcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaac 336
||||||||||||||| |||||||||| |||||||||| ||||| || |||||| | |
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889
Query: 337 ctgcgcggctactacaaccagagcgaggccgg 368
||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857
Score = 391 bits (197), Expect = e-105
Identities = 257/277 (92%)
Strand = Plus / Minus
Query: 367 gggtctcacaccctccagtggatgtacggctgctacttgggaccagacgggctcctcctc 426
|||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672
Query: 427 cgcgggtacagtcagtttggctacgacggcgccgattacctcgccctgaacgaggacctg 486
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612
Query: 487 cgctcctggaccgcggcggacacggcggctcagatctccaagcgcaagtgggaggcggcc 546
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552
Query: 547 gatgcggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 606
|||| ||||||||| | |||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492
Query: 607 tacctggagatggggaaggacacgctgcagcgcgcag 643
|||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 379 bits (191), Expect = e-102
Identities = 251/271 (92%)
Strand = Plus / Minus
Query: 649 ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 708
|||||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541
Query: 709 gccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggaccag 768
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481
Query: 769 agccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 828
||||| ||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421
Query: 829 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 888
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361
Query: 889 ggcctgcaggagcccctcaccctgagatggg 919
|||||||||||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330
Score = 375 bits (189), Expect = e-101
Identities = 255/277 (92%)
Strand = Plus / Minus
Query: 367 gggtctcacaccctccagtggatgtacggctgctacttgggaccagacgggctcctcctc 426
|||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158
Query: 427 cgcgggtacagtcagtttggctacgacggcgccgattacctcgccctgaacgaggacctg 486
| ||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098
Query: 487 cgctcctggaccgcggcggacacggcggctcagatctccaagcgcaagtgggaggcggcc 546
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038
Query: 547 gatgcggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 606
||||||||||||| ||||||||||||||||||| ||||||||||| ||||| | |
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978
Query: 607 tacctggagatggggaaggacacgctgcagcgcgcag 643
|||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941
Score = 371 bits (187), Expect = e-100
Identities = 251/271 (92%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 98 gtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccct 157
|||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799
Query: 158 gtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 217
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644798 gtt-catctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740
Query: 218 ccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattggg 277
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680
Query: 278 atcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaacc 337
|| |||||||||| | |||||||| ||||||||||||||||| || |||||||||||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620
Query: 338 tgcgcggctactacaaccagagcgaggccgg 368
|||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589
Score = 361 bits (182), Expect = 9e-97
Identities = 251/274 (91%)
Strand = Plus / Plus
Query: 646 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 705
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 706 tgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggccaggac 765
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 766 cagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 825
|||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 826 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 885
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 886 gagggcctgcaggagcccctcaccctgagatggg 919
||||||||||||||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 349 bits (176), Expect = 3e-93
Identities = 248/272 (91%)
Strand = Plus / Minus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048
Query: 277 gatcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaac 336
||| |||||||||| | ||||| ||||||||||| | ||||| || |||||| | |
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988
Query: 337 ctgcgcggctactacaaccagagcgaggccgg 368
||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956
Score = 319 bits (161), Expect = 3e-84
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 367 gggtctcacaccctccagtggatgtacggctgctacttgggaccagacgggctcctcctc 426
|||||||||||||||||| | ||| |||||| || ||||||||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102
Query: 427 cgcgggtacagtcagtttggctacgacggcgccgattacctcgccctgaacgaggacctg 486
||| ||||| | | | ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042
Query: 487 cgctcctggaccgcggcggacacggcggctcagatctccaagcgcaagtgggaggcggcc 546
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982
Query: 547 gatgcggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 606
||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922
Query: 607 tacctggagatggggaaggacacgctgcagcgcgcag 643
||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885
Score = 319 bits (161), Expect = 3e-84
Identities = 248/277 (89%)
Strand = Plus / Minus
Query: 367 gggtctcacaccctccagtggatgtacggctgctacttgggaccagacgggctcctcctc 426
|||||||||||||||||| | ||| |||||| || ||||||||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231
Query: 427 cgcgggtacagtcagtttggctacgacggcgccgattacctcgccctgaacgaggacctg 486
||| ||||| | | | | |||||||||||||||||| ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171
Query: 487 cgctcctggaccgcggcggacacggcggctcagatctccaagcgcaagtgggaggcggcc 546
||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111
Query: 547 gatgcggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 606
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051
Query: 607 tacctggagatggggaaggacacgctgcagcgcgcag 643
||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014
Score = 317 bits (160), Expect = 1e-83
Identities = 244/272 (89%)
Strand = Plus / Minus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|| ||||||||||||||||| |||| |||||||||| || ||||||||||||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533
Query: 277 gatcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaac 336
||| |||||||||| |||| || |||||||||||||| | ||| | ||||||||| |
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473
Query: 337 ctgcgcggctactacaaccagagcgaggccgg 368
||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441
Score = 305 bits (154), Expect = 5e-80
Identities = 212/230 (92%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacaca-gatttgttcacgtcccacttt 1171
||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactgagtgacacaagatttgttcacgtcccacttt 24704821
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||||||| || ||||| ||||| |||||||||| |||| ||||||||||||||| |||
Sbjct: 24704820 gtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcct 24704761
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct: 24704760 atgcgcatcatgagaggaggtggggacactggcccagccctgtcccccacgtcccctcct 24704701
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttccagcaggt 1341
|||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 24704700 caccctgacctgtgttctcttccctgatccacttttcagctccagcaggt 24704651
Score = 305 bits (154), Expect = 5e-80
Identities = 206/222 (92%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacac-agatttgttcacgtcccacttt 1171
||||||||| |||||||||||| |||| |||| || ||||| |||||| |||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggaccaagtgttacgagattcgttcacatcccacttt 26674501
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 26674500 gtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccct 26674441
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 26674440 atgagcatcatgagaggaggtggggaccctggcccagccctgtcccccacgtcccctcct 26674381
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttc 1333
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26674380 caccctgacctgtgttctcttccctgatcctctttccagttc 26674339
Score = 297 bits (150), Expect = 1e-77
Identities = 205/222 (92%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacaca-gatttgttcacgtcccacttt 1171
||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagggacacaagatttgttcacgtcccacttt 24721030
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||||| | || ||||| ||| ||||||||||||||||| |||| |||||||||| |||
Sbjct: 24721029 gtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcct 24720970
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 24720969 atgagcatcatgagaagaggtggggaccctggcccagtcctgccccccatgtccccttct 24720910
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttc 1333
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24720909 caccctgacctgtgttctcttccctgatcctctttccagttc 24720868
Score = 297 bits (150), Expect = 1e-77
Identities = 205/222 (92%), Gaps = 1/222 (0%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacaca-gatttgttcacgtcccacttt 1171
||||||||| | |||||||||| |||||||| |||||| ||||||||||| |||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagggacacaagatttgttcacatcccacttt 24748462
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||||||| || ||||| |||||||||||||||| |||| |||| | |||||||| |||
Sbjct: 24748461 gtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcct 24748402
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24748401 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccacgtcccctcct 24748342
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttc 1333
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24748341 caccctgacctgtgttctcttccctgatcctctttccagttc 24748300
Score = 278 bits (140), Expect = 1e-71
Identities = 239/272 (87%)
Strand = Plus / Minus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|| |||||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370
Query: 277 gatcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaac 336
|||| | |||||||| ||||| || | ||||||| || |||||||| |||| | |
Sbjct: 24707369 gatcagcagacgcggaatgtcaaggaagaggcacagatttaccgagggaacctgcgcggc 24707310
Query: 337 ctgcgcggctactacaaccagagcgaggccgg 368
| |||||||||||||||||||| ||||||
Sbjct: 24707309 gctctcggctactacaaccagagcgtggccgg 24707278
Score = 274 bits (138), Expect = 2e-70
Identities = 208/230 (90%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacaca-gatttgttcacgtcccacttt 1171
||||||||| |||||||||||| ||||| || |||||| |||||||||||||||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggactaagggacacaagatttgttcacgtcccacttt 24642127
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||||||| || ||||| ||||| |||||||||| || | |||| | |||||||| |||
Sbjct: 24642126 gtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcct 24642067
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 24642066 atgagcatcctgagaggaggtggggaccctggcccagccctgccccccatgtcccctctt 24642007
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttccagcaggt 1341
||||||||||||||||||||| |||||||| |||||||| |||| |||||
Sbjct: 24642006 caccctgacctgtgttctctttcctgatccactttccagctccaacaggt 24641957
Score = 272 bits (137), Expect = 6e-70
Identities = 242/277 (87%)
Strand = Plus / Minus
Query: 367 gggtctcacaccctccagtggatgtacggctgctacttgggaccagacgggctcctcctc 426
|||||||||||||||||| | ||| |||||| || |||||||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030
Query: 427 cgcgggtacagtcagtttggctacgacggcgccgattacctcgccctgaacgaggacctg 486
| | ||||||| ||| | ||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970
Query: 487 cgctcctggaccgcggcggacacggcggctcagatctccaagcgcaagtgggaggcggcc 546
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910
Query: 547 gatgcggcggagcgtaggaggagctacctgcagggcacgtgtgtggagtggctccagaaa 606
||| ||| |||| ||||||||||||||||||| ||||||||||||||||| | |
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850
Query: 607 tacctggagatggggaaggacacgctgcagcgcgcag 643
||| ||||||||| |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813
Score = 250 bits (126), Expect = 2e-63
Identities = 205/230 (89%), Gaps = 1/230 (0%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacaca-gatttgttcacgtcccacttt 1171
||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagggacacaagatttgttcacgtcccacttt 24655900
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||||||| || ||||| |||||||||||||||| || | |||| |||||||||| ||
Sbjct: 24655899 gtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttct 24655840
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
|||||||||||||||| ||||||| || |||||| | ||||| |||||| |||||||||
Sbjct: 24655839 atgagcatcatgagagtaggtgggaacactggcctaaccctgtcccccacatcccctcct 24655780
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttccagcaggt 1341
|||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 24655779 caccctgacctgtgttctcttccctgatccacttttcagctccagcaggt 24655730
Score = 218 bits (110), Expect = 8e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860
Score = 218 bits (110), Expect = 8e-54
Identities = 230/270 (85%)
Strand = Plus / Minus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||||||| ||| |||| | ||||||||||| | |||||||||||||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
| ||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|| || | | ||| ||||||||||||| | |||| || ||||||||| ||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602
Query: 277 gatcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaac 336
|| |||||||||| || || ||||||||||||| || |||||| ||||||| |
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542
Query: 337 ctgcgcggctactacaaccagagcgaggcc 366
||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512
Score = 218 bits (110), Expect = 8e-54
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338
Score = 210 bits (106), Expect = 2e-51
Identities = 230/270 (85%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||||||| ||| |||| | ||||||||||| | |||||||||||||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
| ||||||| ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|| || | | ||| ||||||||||||| | |||| || ||||||||| |||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473
Query: 277 gatcgggagacgcggcgtgtcatgggcaacgcacagactttccgagggagcctgaacaac 336
|| |||||||||| || || ||||||||||||| ||||||||| ||||||| |
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413
Query: 337 ctgcgcggctactacaaccagagcgaggcc 366
||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383
Score = 204 bits (103), Expect = 1e-49
Identities = 109/111 (98%)
Strand = Plus / Minus
Query: 922 cctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctggtc 981
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 26675478 cctccacagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtc 26675419
Query: 982 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675418 gctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368
Score = 202 bits (102), Expect = 5e-49
Identities = 111/114 (97%)
Strand = Plus / Minus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988
Score = 202 bits (102), Expect = 5e-49
Identities = 111/114 (97%)
Strand = Plus / Plus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571
Score = 198 bits (100), Expect = 8e-48
Identities = 191/222 (86%), Gaps = 12/222 (5%)
Strand = Plus / Minus
Query: 1113 agtgtgagatagctgccttgtgtggactgagtgacaca-gatttgttcacgtcccacttt 1171
||||||||| |||||||||||| | |||||| |||||| |||||||||||||||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagggacacaagatttgttcacgtcccacttt 24683960
Query: 1172 gtgacttcggaaaccctgcctcctgtttctgcagcagcatttgaatgtgtctgtgtccct 1231
|||| | | || ||||| |||||||||||||||| || | |||| | |||||||| |||
Sbjct: 24683959 gtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcct 24683900
Query: 1232 atgagcatcatgagaggaggtggggaccctggcccagccctgccccccatgtcccctcct 1291
||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 24683899 atgagcatcctgagaggaggtggggaccctgg-----------cccccacgtcccctcct 24683851
Query: 1292 caccctgacctgtgttctcttccctgatcctctttccagttc 1333
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24683850 caccctgacctgtgttctcttccatgatcctctttccagttc 24683809
Score = 194 bits (98), Expect = 1e-46
Identities = 110/114 (96%)
Strand = Plus / Minus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892
Score = 186 bits (94), Expect = 3e-44
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824
Score = 186 bits (94), Expect = 3e-44
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676
Score = 172 bits (87), Expect = 4e-40
Identities = 93/95 (97%)
Strand = Plus / Minus
Query: 5 cttctcccccgacccggaggctgaggatcatggggcctggagccctcttcctgctgctgt 64
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751634 cttctccccagaccccgaggctgaggatcatggggcctggagccctcttcctgctgctgt 24751575
Query: 65 cggggaccctggccctgaccgggacccaggcgggt 99
|||||||||||||||||||||||||||||||||||
Sbjct: 24751574 cggggaccctggccctgaccgggacccaggcgggt 24751540
Score = 168 bits (85), Expect = 7e-39
Identities = 154/177 (87%)
Strand = Plus / Minus
Query: 103 cactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccctgtttc 162
|||||| |||| |||||| ||| | |||||||||||||| || |||||||||| | | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407
Query: 163 atcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcccccaat 222
| || |||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347
Query: 223 ccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgggat 279
||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggat 27210290
Score = 168 bits (85), Expect = 7e-39
Identities = 154/177 (87%)
Strand = Plus / Minus
Query: 103 cactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccctgtttc 162
|||||| |||| |||||| ||| | |||||||||||||| || |||||||||| | | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933
Query: 163 atcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcccccaat 222
| || |||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873
Query: 223 ccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgggat 279
||| ||||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggat 27629816
Score = 165 bits (83), Expect = 1e-37
Identities = 92/95 (96%)
Strand = Plus / Minus
Query: 5 cttctcccccgacccggaggctgaggatcatggggcctggagccctcttcctgctgctgt 64
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24687120 cttctccccagactccgaggctgaggatcatggggcctggagccctcttcctgctgctgt 24687061
Query: 65 cggggaccctggccctgaccgggacccaggcgggt 99
|||||||||||||||||||||||||||||||||||
Sbjct: 24687060 cggggaccctggccctgaccgggacccaggcgggt 24687026
Score = 163 bits (82), Expect = 4e-37
Identities = 106/114 (92%)
Strand = Plus / Minus
Query: 919 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 978
|||||| |||||||||| |||||||| |||| |||||||||||||||||| || ||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819
Query: 979 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1032
||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765
Score = 141 bits (71), Expect = 2e-30
Identities = 101/111 (90%)
Strand = Plus / Plus
Query: 412 gacgggctcctcctccgcgggtacagtcagtttggctacgacggcgccgattacctcgcc 471
||||||| |||||||||||||||||||||||| | ||| |||||||| |||||| ||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997
Query: 472 ctgaacgaggacctgcgctcctggaccgcggcggacacggcggctcagatc 522
||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatc 27615048
Score = 125 bits (63), Expect = 9e-26
Identities = 150/179 (83%)
Strand = Plus / Plus
Query: 102 ccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccctgttt 161
|||||||||||| || ||| |||||||||||||||||||| |||| ||||| || | |
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356
Query: 162 catcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcccccaa 221
||| | ||||||||||||||||||||||| || || ||||||||||||||||||| ||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416
Query: 222 tccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgggatc 280
|||| | |||||| |||| || ||||||| ||| || |||||| |||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggatc 24620475
Score = 121 bits (61), Expect = 1e-24
Identities = 222/273 (81%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||| ||||||| ||| ||||||||||| || || |||| |||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 216
| ||| || |||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568
Query: 217 cccaatccgcggatggagccgcgggcgccgtggatagagaaggaggggcaggagtattgg 276
|| |||||| || |||||||||| | |||||| | ||| |||||| | |||||||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628
Query: 277 gatcgggagacgcggcgtgt-catgggcaacgcacagactttccgagggagcctgaacaa 335
|||||| | || | || | | || || || | |||||| ||||| || |||||||||
Sbjct: 27614629 gatcggaacacac-gcatctacaaggacacctcacagaatttccaagtgagcctgaatgt 27614687
Query: 336 cctgcgcggctactacaaccagagcgaggccgg 368
|||||||||||||||||||||||||||||||||
Sbjct: 27614688 cctgcgcggctactacaaccagagcgaggccgg 27614720
Score = 113 bits (57), Expect = 3e-22
Identities = 78/85 (91%)
Strand = Plus / Minus
Query: 5 cttctcccccgacccggaggctgaggatcatggggcctggagccctcttcctgctgctgt 64
||||||||| ||| | | ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 24659068 cttctccccagactccgcggctgaggatcatggggccccgagccctcttcctgctgctgt 24659009
Query: 65 cggggaccctggccctgaccgggac 89
||||| |||||||||||||||||||
Sbjct: 24659008 cgggggccctggccctgaccgggac 24658984
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1061 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24604434 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 24604487
Score = 101 bits (51), Expect = 1e-18
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 21 gaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggaccctggccct 80
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 24645253 gaggctgaggatcatggggccccgagccctcttcttgctgctgtcggggaccctggccct 24645194
Query: 81 gac 83
|||
Sbjct: 24645193 gac 24645191
Score = 101 bits (51), Expect = 1e-18
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 21 gaggctgaggatcatggggcctggagccctcttcctgctgctgtcggggaccctggccct 80
|||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct: 24707953 gaggctaaggatcatggggcctggagcccttgtcctgctgctgtccggggccctggccct 24707894
Query: 81 gaccgggacccaggcgggt 99
|||||||||| |||||||
Sbjct: 24707893 gaccgggacctgggcgggt 24707875
Score = 99.6 bits (50), Expect = 5e-18
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1061 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1114
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 24684231 caggcagtgacagtgaccagggctccgatgtgtcccttaccaaggatcctagag 24684178
Score = 97.6 bits (49), Expect = 2e-17
Identities = 76/85 (89%)
Strand = Plus / Minus
Query: 5 cttctcccccgacccggaggctgaggatcatggggcctggagccctcttcctgctgctgt 64
||||||||| ||| | | ||||||||||||||||||| ||| ||||||||||||||| |
Sbjct: 24724194 cttctccccagactccgcggctgaggatcatggggccccgaggcctcttcctgctgctct 24724135
Query: 65 cggggaccctggccctgaccgggac 89
||||| |||||||||||||||||||
Sbjct: 24724134 cgggggccctggccctgaccgggac 24724110
Score = 93.7 bits (47), Expect = 3e-16
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 179 tggacgacacgcagttcgtgcggttcgacagcgacgcccccaatccgcggatggagccgc 238
||||||||||||||||||| |||||| |||||| ||| | ||||| || ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343
Query: 239 gggcgccgtggatagagaaggaggggcaggagtattgggatcg 281
||||||||||||| ||| ||||||||| ||| |||||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 27603386
Score = 91.7 bits (46), Expect = 1e-15
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 1061 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1114
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345
Score = 91.7 bits (46), Expect = 1e-15
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 1061 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1114
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 24748733 caggcagtgacagtgaccagggctccgatgtgtcccttaccaagggtcctagag 24748680
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1026 ctcaggtgaaaaaggagggagctacactcaggctgcagg 1064
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1028 caggtgaaaaaggagggagctacactcaggctgcagg 1064
|||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1028 caggtgaaaaaggagggagctacactcaggctgcagg 1064
|||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358
Score = 73.8 bits (37), Expect = 3e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1028 caggtgaaaaaggagggagctacactcaggctgcagg 1064
|||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857
Score = 69.9 bits (35), Expect = 5e-09
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 447 ctacgacggcgccgattacctcgccctgaacgaggacctgcgctcctggaccgcg 501
||||||||||| ||||||| ||| |||||| || |||||||||||||||||||||
Sbjct: 27603798 ctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852
Score = 65.9 bits (33), Expect = 7e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1032 tgaaaaaggagggagctacactcaggctgcagg 1064
|||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898
Score = 63.9 bits (32), Expect = 3e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1028 caggtgaaaaaggagggagctacactcaggct 1059
||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432
Score = 61.9 bits (31), Expect = 1e-06
Identities = 48/51 (94%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 567 gagctacctgcagggcacgtgtgtggagtggctccagaa-atacctggaga 616
|||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 27209731 gagctacctggagggcacgtgtgtggagtggctc-agaagatacctggaga 27209682
Score = 61.9 bits (31), Expect = 1e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 585 gtgtgtggagtggctccagaaatacctggagatggggaaggacacgctgcagcgcgcag 643
||||||||||||||||| || ||||| |||| |||||||||| ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994
Score = 61.9 bits (31), Expect = 1e-06
Identities = 48/51 (94%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 567 gagctacctgcagggcacgtgtgtggagtggctccagaa-atacctggaga 616
|||||||||| ||||||||||||||||||||||| |||| |||||||||||
Sbjct: 27629257 gagctacctggagggcacgtgtgtggagtggctc-agaagatacctggaga 27629208
Score = 60.0 bits (30), Expect = 4e-06
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 58 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 99
|||||||||||| |||||||||||||||||||| |||||||
Sbjct: 24627347 ctgctgtcgggggccctggccctgaccgggacctgggcgggt 24627306
Score = 60.0 bits (30), Expect = 4e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1061 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1114
||||||||||||||||||||||||| ||||||| ||| | | |||||||||||
Sbjct: 24656172 caggcagtgacagtgcccagggctctgatgtgtttcttccaatggatcctagag 24656119
Score = 60.0 bits (30), Expect = 4e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1061 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1114
||||||| |||||||||||| |||| | ||||||||| | ||||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719
>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
Length = 107
Score = 155 bits (78), Expect = 1e-34
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 97 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 156
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61
Query: 157 tgtttcatcgaagtcggctacgtggacgacacgcagttcgtgcggt 202
| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107
>gb|GL896105.1| Sus scrofa unplaced genomic scaffold chrU_scaffold479
Length = 309
Score = 69.9 bits (35), Expect = 5e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 1291 tcaccctgacctgtgttctcttccctgatcctctttccagttccagcaggt 1341
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Sbjct: 1 tcaccctgacctgtgttctctttcctgatccactttccagctccaacaggt 51
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 57,600,346
Number of extensions: 932
Number of successful extensions: 932
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 78
Length of query: 1823
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1801
Effective length of database: 2,808,408,574
Effective search space: 5057943841774
Effective search space used: 5057943841774
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)