Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001279
(1105 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001007813.1| ATP synthase subunit s, mitochondrial precur... 50 4e-06
>ref|NP_001007813.1| ATP synthase subunit s, mitochondrial precursor [Bos taurus].
Length = 200
Score = 50.1 bits (118), Expect = 4e-06
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Frame = +2
Query: 170 AVREYLLRKQAL-KVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 346
A E+LLR A+ + H + R+Q + + L + +QA+DA+ I G
Sbjct: 50 AASEWLLRCGAMVRYHGQQRWQ--------KDYNHLPTGPLDKYKIQAIDATDSCIMSIG 101
Query: 347 LDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHH 517
D+ +C +++D CL RL QL + S+ E+ + C V+++G+ LHH
Sbjct: 102 FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 161
Query: 518 LQ 523
+
Sbjct: 162 FR 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,980,124
Number of extensions: 1373470
Number of successful extensions: 5999
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5977
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,240,222
Effective search space: 3759418608
Effective search space used: 3759418608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001279
(1105 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiar... 203 2e-52
>ref|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiaris].
Length = 400
Score = 203 bits (517), Expect = 2e-52
Identities = 110/192 (57%), Positives = 126/192 (65%), Gaps = 30/192 (15%)
Frame = +2
Query: 38 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 211
LH VA N+ T IR LSR PEG+Q+KGR+LLQFLAD F DV+A+REYLLRKQA K+
Sbjct: 151 LHLVAPRWNAGTRGIRGLSRAAAPEGNQKKGRSLLQFLADRFYDVQALREYLLRKQAWKM 210
Query: 212 HRKNR---------------------------FQDNEWIQSG-RGLSSLEFRKFREVPVQ 307
H+KNR FQ EWI+S RG SL+F K + VPV+
Sbjct: 211 HQKNRPFTYIRERYGPYAAGAYFILKLGGAVKFQGKEWIRSNARGHFSLDFLKLQTVPVE 270
Query: 308 AVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRV 487
AVDASGCA+NYQGLD+ RCPHVDDWCL RLH LA SLQELSLAGCP++
Sbjct: 271 AVDASGCAVNYQGLDSLLALKELQVLWLQRCPHVDDWCLSRLHPLASSLQELSLAGCPKI 330
Query: 488 SERGLACLHHLQ 523
SERGLACLHHLQ
Sbjct: 331 SERGLACLHHLQ 342
Score = 75.1 bits (183), Expect = 1e-13
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +1
Query: 694 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 831
DISDLPAVS+P LTQILVEEMLP+C+V G+DWA+GLK+G EEQ +D
Sbjct: 348 DISDLPAVSNPGLTQILVEEMLPDCKVVGADWARGLKVGQEEQYQD 393
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,937,781
Number of extensions: 1412969
Number of successful extensions: 6156
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6138
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 264
Effective length of database: 15,407,560
Effective search space: 4067595840
Effective search space used: 4067595840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001279
(1105 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161343.1| ATP synthase subunit s-like protein isoform ... 193 2e-49
Alignment gi|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [... 179 5e-45
Alignment gi|NP_001161339.1| ATP synthase subunit s-like protein isoform ... 174 1e-43
Alignment gi|NP_001161342.1| ATP synthase subunit s-like protein isoform ... 117 2e-26
Alignment gi|NP_001161341.1| ATP synthase subunit s-like protein isoform ... 102 6e-22
Alignment gi|NP_001161340.1| ATP synthase subunit s-like protein isoform ... 98 2e-20
>ref|NP_001161343.1| ATP synthase subunit s-like protein isoform 5 [Homo sapiens].
Length = 230
Score = 193 bits (491), Expect = 2e-49
Identities = 102/172 (59%), Positives = 119/172 (69%), Gaps = 3/172 (1%)
Frame = +2
Query: 17 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 190
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 191 RKQALKVHRKNRFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCAINYQGLDNXXXX 367
+++ KVH KNRF+D EWI+ + G S EF F EVPV+AVDA C INY+GLDN
Sbjct: 61 QREMYKVHEKNRFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNLLRL 120
Query: 368 XXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACLHHLQ 523
RC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACLHHLQ
Sbjct: 121 KELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACLHHLQ 172
Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +1
Query: 694 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 831
DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 178 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 223
>ref|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [Homo sapiens].
Length = 257
Score = 179 bits (453), Expect = 5e-45
Identities = 102/199 (51%), Positives = 119/199 (59%), Gaps = 30/199 (15%)
Frame = +2
Query: 17 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 190
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 191 RKQALKVHRKNR---------------------------FQDNEWIQSGR-GLSSLEFRK 286
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 287 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELS 466
F EVPV+AVDA C INY+GLDN RC HVDDWCL RL+ LADSLQELS
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELS 180
Query: 467 LAGCPRVSERGLACLHHLQ 523
LAGCPR+SERGLACLHHLQ
Sbjct: 181 LAGCPRISERGLACLHHLQ 199
Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +1
Query: 694 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 831
DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 205 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 250
>ref|NP_001161339.1| ATP synthase subunit s-like protein isoform 1 [Homo sapiens].
Length = 263
Score = 174 bits (441), Expect = 1e-43
Identities = 94/184 (51%), Positives = 111/184 (60%), Gaps = 28/184 (15%)
Frame = +2
Query: 56 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNR--- 226
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNR
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 227 ------------------------FQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 331
F+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 332 INYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACL 511
INY+GLDN RC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACL
Sbjct: 142 INYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACL 201
Query: 512 HHLQ 523
HHLQ
Sbjct: 202 HHLQ 205
Score = 78.2 bits (191), Expect = 1e-14
Identities = 38/46 (82%), Positives = 40/46 (86%)
Frame = +1
Query: 694 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 831
DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 211 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 256
>ref|NP_001161342.1| ATP synthase subunit s-like protein isoform 6 [Homo sapiens].
Length = 158
Score = 117 bits (292), Expect = 2e-26
Identities = 66/132 (50%), Positives = 81/132 (61%), Gaps = 3/132 (2%)
Frame = +2
Query: 17 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 190
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 191 RKQALKVHRKNRFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCAINYQGLDNXXXX 367
+++ KVH KNRF+D EWI+ + G S EF F EVPV+AVDA C INY+GLDN
Sbjct: 61 QREMYKVHEKNRFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCDINYEGLDNLRTS 120
Query: 368 XXXXXXXXXRCP 403
CP
Sbjct: 121 AGWTSRTSLPCP 132
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = +2
Query: 680 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 799
TSAGW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 119 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 158
>ref|NP_001161341.1| ATP synthase subunit s-like protein isoform 3 [Homo sapiens].
Length = 185
Score = 102 bits (254), Expect = 6e-22
Identities = 66/159 (41%), Positives = 81/159 (50%), Gaps = 30/159 (18%)
Frame = +2
Query: 17 MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 190
MAA ASL VA N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1 MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60
Query: 191 RKQALKVHRKNR---------------------------FQDNEWIQSGR-GLSSLEFRK 286
+++ KVH KNR F+D EWI+ + G S EF
Sbjct: 61 QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120
Query: 287 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCP 403
F EVPV+AVDA C INY+GLDN CP
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLRTSAGWTSRTSLPCP 159
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = +2
Query: 680 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 799
TSAGW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 146 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 185
>ref|NP_001161340.1| ATP synthase subunit s-like protein isoform 2 [Homo sapiens].
Length = 191
Score = 97.8 bits (242), Expect = 2e-20
Identities = 58/144 (40%), Positives = 73/144 (50%), Gaps = 28/144 (19%)
Frame = +2
Query: 56 NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNR--- 226
N I L V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++ KVH KNR
Sbjct: 22 NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81
Query: 227 ------------------------FQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 331
F+D EWI+ + G S EF F EVPV+AVDA C
Sbjct: 82 WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141
Query: 332 INYQGLDNXXXXXXXXXXXXXRCP 403
INY+GLDN CP
Sbjct: 142 INYEGLDNLRTSAGWTSRTSLPCP 165
Score = 57.4 bits (137), Expect = 2e-08
Identities = 25/40 (62%), Positives = 26/40 (65%)
Frame = +2
Query: 680 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 799
TSAGW S T L CP SLR+WWRRCCP R TG RA
Sbjct: 152 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 191
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,062,270
Number of extensions: 1384465
Number of successful extensions: 5864
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5839
Number of HSP's successfully gapped: 12
Length of query: 368
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 264
Effective length of database: 14,868,908
Effective search space: 3925391712
Effective search space used: 3925391712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001279
(1105 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079780.2| ATP synthase subunit s-like protein [Mus muscul... 172 5e-43
>ref|NP_079780.2| ATP synthase subunit s-like protein [Mus musculus].
Length = 257
Score = 172 bits (435), Expect = 5e-43
Identities = 98/193 (50%), Positives = 117/193 (60%), Gaps = 31/193 (16%)
Frame = +2
Query: 38 LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 211
LH AR N I +S V P+ S+ K RTLLQFL+DHF D++ +REYLL+KQ KV
Sbjct: 7 LHLGAREWNGRARRIHGMSELVTPDSSREKKRTLLQFLSDHFQDIQTLREYLLQKQISKV 66
Query: 212 HRKNR---------------------------FQDNE-WIQ-SGRGLSSLEFRKFREVPV 304
+R+NR FQD E WI+ + R E +KF+ VPV
Sbjct: 67 NRENRSFTNIQEKYGPYVAGAVFILKQGGAVKFQDKEEWIRPNNRSHFLAEIQKFQNVPV 126
Query: 305 QAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPR 484
+AVDASGCAINYQGL N RCP++DDWCL RL+ LA SLQELSLAGCPR
Sbjct: 127 EAVDASGCAINYQGLSNLLPLKELRSLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPR 186
Query: 485 VSERGLACLHHLQ 523
+SERGLACLHHLQ
Sbjct: 187 ISERGLACLHHLQ 199
Score = 69.7 bits (169), Expect = 4e-12
Identities = 34/46 (73%), Positives = 38/46 (82%)
Frame = +1
Query: 694 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 831
DISDLPAVS P LTQILVEEMLP+CEV G+DWAQ LKL ++Q D
Sbjct: 205 DISDLPAVSHPGLTQILVEEMLPHCEVLGADWAQNLKLEPDKQPPD 250
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,632,877
Number of extensions: 1132338
Number of successful extensions: 4858
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4827
Number of HSP's successfully gapped: 2
Length of query: 368
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 265
Effective length of database: 12,523,851
Effective search space: 3318820515
Effective search space used: 3318820515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001279
(1105 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127203.1| PREDICTED: ATP synthase subunit s-like prote... 299 2e-81
Alignment gi|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochond... 52 6e-07
>ref|XP_003127203.1| PREDICTED: ATP synthase subunit s-like protein-like [Sus scrofa].
Length = 232
Score = 299 bits (765), Expect = 2e-81
Identities = 156/196 (79%), Positives = 156/196 (79%), Gaps = 27/196 (13%)
Frame = +2
Query: 17 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 196
MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK
Sbjct: 1 MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 60
Query: 197 QALKVHRKNR---------------------------FQDNEWIQSGRGLSSLEFRKFRE 295
QALKVHRKNR FQDNEWIQSGRGLSSLEFRKFRE
Sbjct: 61 QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 120
Query: 296 VPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAG 475
VPVQAVDASGCAINYQGLDN RCPHVDDWCLGRLHQLADSLQELSLAG
Sbjct: 121 VPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAG 180
Query: 476 CPRVSERGLACLHHLQ 523
CPRVSERGLACLHHLQ
Sbjct: 181 CPRVSERGLACLHHLQ 196
Score = 55.5 bits (132), Expect = 5e-08
Identities = 26/26 (100%), Positives = 26/26 (100%)
Frame = +1
Query: 694 DISDLPAVSSPDLTQILVEEMLPNCE 771
DISDLPAVSSPDLTQILVEEMLPNCE
Sbjct: 202 DISDLPAVSSPDLTQILVEEMLPNCE 227
>ref|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochondrial-like [Sus scrofa].
Length = 247
Score = 52.0 bits (123), Expect = 6e-07
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Frame = +2
Query: 170 AVREYLLRKQAL-KVHRKNRFQDNEWIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQG 346
A E+LLR A+ + H + R+Q + + L + +QA+DA+ I G
Sbjct: 97 AASEWLLRCGAMVRYHGQERWQ--------KDYNHLPTGPLDKYKIQAIDATDSCIMSIG 148
Query: 347 LDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQ---LADSLQELSLAGCPRVSERGLACLHH 517
D+ +C +++D+CL RL Q L S+ E+ + C ++++G+ LHH
Sbjct: 149 FDHMEGLQYVEKIRFCKCHYIEDYCLERLSQIENLQKSMLEMEIISCGNITDKGIIALHH 208
Query: 518 LQ 523
L+
Sbjct: 209 LR 210
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,117,048
Number of extensions: 890753
Number of successful extensions: 3885
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3874
Number of HSP's successfully gapped: 3
Length of query: 368
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,854,232
Effective search space: 2372934176
Effective search space used: 2372934176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001279
(1105 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1402 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1402 bits (707), Expect = 0.0
Identities = 738/747 (98%), Gaps = 1/747 (0%)
Strand = Plus / Plus
Query: 360 tggccctgaaggagctccagtccctgtcgctgcagcgctgtccccacgtggacgactggt 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45227472 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45227531
Query: 420 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227532 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45227591
Query: 480 cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227592 cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 45227651
Query: 540 ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227652 ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 45227711
Query: 600 tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227712 tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 45227771
Query: 660 catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227772 catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 45227831
Query: 720 cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227832 cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 45227891
Query: 780 gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227892 gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 45227951
Query: 840 cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227952 cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 45228011
Query: 900 ccaccgacgttcactcacccgaagggttgggctgggatgaggggcactggcaagtctata 959
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 45228012 ccaccgacgttcactcagccgaagggttgggctgggatgaggggcactggcaggtctata 45228071
Query: 960 ccctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcctt 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45228072 ccctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcctt 45228131
Query: 1020 ctcctgccccctcaggtctagggcttctggctaacaatagctctcctttgtggtttcccc 1079
|||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct: 45228132 ctcctgcctcctcaggtctagggcttctggctacaagtagctctcccttgtggtttcccc 45228191
Query: 1080 a-gccacgcccgcctctgtgtcaggca 1105
| |||||||||||||||||||||||||
Sbjct: 45228192 acgccacgcccgcctctgtgtcaggca 45228218
Score = 1402 bits (707), Expect = 0.0
Identities = 738/747 (98%), Gaps = 1/747 (0%)
Strand = Plus / Minus
Query: 360 tggccctgaaggagctccagtccctgtcgctgcagcgctgtccccacgtggacgactggt 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45297914 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45297855
Query: 420 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297854 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45297795
Query: 480 cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297794 cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 45297735
Query: 540 ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297734 ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 45297675
Query: 600 tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297674 tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 45297615
Query: 660 catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297614 catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 45297555
Query: 720 cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297554 cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 45297495
Query: 780 gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297494 gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 45297435
Query: 840 cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297434 cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 45297375
Query: 900 ccaccgacgttcactcacccgaagggttgggctgggatgaggggcactggcaagtctata 959
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 45297374 ccaccgacgttcactcagccgaagggttgggctgggatgaggggcactggcaggtctata 45297315
Query: 960 ccctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcctt 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297314 ccctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcctt 45297255
Query: 1020 ctcctgccccctcaggtctagggcttctggctaacaatagctctcctttgtggtttcccc 1079
|||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct: 45297254 ctcctgcctcctcaggtctagggcttctggctacaagtagctctcccttgtggtttcccc 45297195
Query: 1080 a-gccacgcccgcctctgtgtcaggca 1105
| |||||||||||||||||||||||||
Sbjct: 45297194 acgccacgcccgcctctgtgtcaggca 45297168
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 34 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224724 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45224783
Query: 94 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224784 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45224843
Query: 154 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224844 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45224903
Query: 214 ccgaaaaaaccggt 227
||||||||||||||
Sbjct: 45224904 ccgaaaaaaccggt 45224917
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Minus
Query: 34 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300663 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45300604
Query: 94 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300603 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45300544
Query: 154 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300543 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45300484
Query: 214 ccgaaaaaaccggt 227
||||||||||||||
Sbjct: 45300483 ccgaaaaaaccggt 45300470
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 225 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227249 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 45227308
Query: 285 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227309 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 45227368
Query: 345 gcctggacaacctct 359
|||||||||||||||
Sbjct: 45227369 gcctggacaacctct 45227383
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 225 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298137 ggtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccgga 45298078
Query: 285 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298077 agttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaag 45298018
Query: 345 gcctggacaacctct 359
|||||||||||||||
Sbjct: 45298017 gcctggacaacctct 45298003
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 gcttaattccagcaagatggcggcgtccagggcg 34
||||||||||||||||||||||||||||||||||
Sbjct: 45223449 gcttaattccagcaagatggcggcgtccagggcg 45223482
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 gcttaattccagcaagatggcggcgtccagggcg 34
||||||||||||||||||||||||||||||||||
Sbjct: 45301940 gcttaattccagcaagatggcggcgtccagggcg 45301907
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,782,086
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 8
Length of query: 1105
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1084
Effective length of database: 2,808,413,156
Effective search space: 3044319861104
Effective search space used: 3044319861104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)