Animal-Genome cDNA 20110601C-001319


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001319
         (1774 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos ta...   365   e-101
Alignment   gi|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos ...   160   3e-39
Alignment   gi|XP_002683786.1| PREDICTED: small nuclear ribonucleoprotein p...   160   3e-39
Alignment   gi|NP_001070585.1| RNA-binding protein 40 [Bos taurus].               50   8e-06

>ref|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos taurus].
          Length = 282

 Score =  365 bits (938), Expect = e-101
 Identities = 199/282 (70%), Positives = 200/282 (70%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV            SQETPA
Sbjct: 61  EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120

Query: 441 SKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXXX 620
           +KK                        TQ PRIMHH                        
Sbjct: 121 AKKAVQGGAAAPVVGTVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQL 180

Query: 621 XXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 800
                                SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240

Query: 801 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282


>ref|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos taurus].
          Length = 218

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 141 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 200

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 201 QGFKITPSHAMKITYAKK 218


>ref|XP_002683786.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B'' [Bos
           taurus].
          Length = 218

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 141 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 200

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 201 QGFKITPSHAMKITYAKK 218


>ref|NP_001070585.1| RNA-binding protein 40 [Bos taurus].
          Length = 516

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 102 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 269
           PN  IY+ NL + +++ +LK     Y  FS   Q  + DI + +  +M+GQAF+      
Sbjct: 417 PNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 476

Query: 270 SATNALRSMQGFPFYDKPMRIQYAKT 347
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 477 AAAKALKEANGYVLFGKPMVVQFARS 502


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,524,478
Number of extensions: 1738923
Number of successful extensions: 8015
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7875
Number of HSP's successfully gapped: 7
Length of query: 591
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,107,870
Effective search space: 6814101210
Effective search space used: 6814101210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001319
         (1774 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_533663.2| PREDICTED: similar to U1 small nuclear ribonucl...   365   e-101
Alignment   gi|XP_547687.2| PREDICTED: similar to U1 small nuclear ribonucl...   190   4e-48
Alignment   gi|XP_860797.1| PREDICTED: similar to U1 small nuclear ribonucl...   190   4e-48
Alignment   gi|XP_850163.1| PREDICTED: similar to small nuclear ribonucleop...   188   1e-47
Alignment   gi|XP_850387.1| PREDICTED: similar to small nuclear ribonucleop...   162   7e-40
Alignment   gi|XP_534338.2| PREDICTED: similar to U2 small nuclear ribonucl...   160   3e-39
Alignment   gi|XP_857793.1| PREDICTED: similar to U2 small nuclear ribonucl...   160   3e-39
Alignment   gi|XP_857753.1| PREDICTED: similar to U2 small nuclear ribonucl...   160   3e-39
Alignment   gi|XP_857709.1| PREDICTED: similar to U2 small nuclear ribonucl...   160   3e-39
Alignment   gi|XP_857667.1| PREDICTED: similar to U2 small nuclear ribonucl...   160   3e-39

>ref|XP_533663.2| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
           snRNP protein A) (U1A protein) (U1-A) [Canis
           familiaris].
          Length = 282

 Score =  365 bits (938), Expect = e-101
 Identities = 199/282 (70%), Positives = 200/282 (70%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV            SQETPA
Sbjct: 61  EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120

Query: 441 SKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXXX 620
           +KK                        TQ PRIMHH                        
Sbjct: 121 AKKAVQGGAAAPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180

Query: 621 XXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 800
                                SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240

Query: 801 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282


>ref|XP_547687.2| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
           snRNP protein A) (U1-A) (Sex determination protein snf)
           isoform 1 [Canis familiaris].
          Length = 215

 Score =  190 bits (482), Expect = 4e-48
 Identities = 97/102 (95%), Positives = 98/102 (96%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPET PNHTIYIN+LNEKIKKDELKKSLYAIFSQFGQIL ILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETCPNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 386
           EVS ATNALRSMQGFPFYDKPM IQYAKTDSDIIAKMKGTFV
Sbjct: 61  EVSRATNALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFV 102



 Score =  150 bits (380), Expect = 3e-36
 Identities = 75/81 (92%), Positives = 76/81 (93%)
 Frame = +3

Query: 684 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 863
           SENPPNH LFLTNLPEETNELMLSMLFNQFPGFKEVRL PG HDIAFVEFDNEVQA  AR
Sbjct: 135 SENPPNHFLFLTNLPEETNELMLSMLFNQFPGFKEVRLDPGWHDIAFVEFDNEVQAEDAR 194

Query: 864 DALQGFKITQNNAMKISFAKK 926
           +ALQGFKITQNNAMKISFAKK
Sbjct: 195 NALQGFKITQNNAMKISFAKK 215


>ref|XP_860797.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A (U1
           snRNP protein A) (U1-A) (Sex determination protein snf)
           isoform 3 [Canis familiaris].
          Length = 229

 Score =  190 bits (482), Expect = 4e-48
 Identities = 97/102 (95%), Positives = 98/102 (96%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPET PNHTIYIN+LNEKIKKDELKKSLYAIFSQFGQIL ILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETCPNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 386
           EVS ATNALRSMQGFPFYDKPM IQYAKTDSDIIAKMKGTFV
Sbjct: 61  EVSRATNALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFV 102



 Score =  150 bits (380), Expect = 3e-36
 Identities = 75/81 (92%), Positives = 76/81 (93%)
 Frame = +3

Query: 684 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 863
           SENPPNH LFLTNLPEETNELMLSMLFNQFPGFKEVRL PG HDIAFVEFDNEVQA  AR
Sbjct: 149 SENPPNHFLFLTNLPEETNELMLSMLFNQFPGFKEVRLDPGWHDIAFVEFDNEVQAEDAR 208

Query: 864 DALQGFKITQNNAMKISFAKK 926
           +ALQGFKITQNNAMKISFAKK
Sbjct: 209 NALQGFKITQNNAMKISFAKK 229


>ref|XP_850163.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
           isoform 2 [Canis familiaris].
          Length = 217

 Score =  188 bits (478), Expect = 1e-47
 Identities = 96/101 (95%), Positives = 97/101 (96%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPET PNHTIYIN+LNEKIKKDELKKSLYAIFSQFGQIL ILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETCPNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           EVS ATNALRSMQGFPFYDKPM IQYAKTDSDIIAKMKGTF
Sbjct: 61  EVSRATNALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTF 101



 Score =  150 bits (380), Expect = 3e-36
 Identities = 75/81 (92%), Positives = 76/81 (93%)
 Frame = +3

Query: 684 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 863
           SENPPNH LFLTNLPEETNELMLSMLFNQFPGFKEVRL PG HDIAFVEFDNEVQA  AR
Sbjct: 137 SENPPNHFLFLTNLPEETNELMLSMLFNQFPGFKEVRLDPGWHDIAFVEFDNEVQAEDAR 196

Query: 864 DALQGFKITQNNAMKISFAKK 926
           +ALQGFKITQNNAMKISFAKK
Sbjct: 197 NALQGFKITQNNAMKISFAKK 217


>ref|XP_850387.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide A
           (predicted) [Canis familiaris].
          Length = 233

 Score =  162 bits (411), Expect = 7e-40
 Identities = 80/81 (98%), Positives = 80/81 (98%)
 Frame = +3

Query: 684 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 863
           SENPPNHILFLTNLPEETNELM SMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR
Sbjct: 153 SENPPNHILFLTNLPEETNELMPSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAR 212

Query: 864 DALQGFKITQNNAMKISFAKK 926
           DALQGFKITQNNAMKISFAKK
Sbjct: 213 DALQGFKITQNNAMKISFAKK 233



 Score =  162 bits (409), Expect = 1e-39
 Identities = 90/123 (73%), Positives = 92/123 (74%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           E SSATN                  YAKTDSDIIAK+KGTFV            SQETPA
Sbjct: 61  EASSATN------------------YAKTDSDIIAKIKGTFVERDRKREKRKPKSQETPA 102

Query: 441 SKK 449
           +KK
Sbjct: 103 AKK 105


>ref|XP_534338.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
           1 [Canis familiaris].
          Length = 260

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 37  DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 96

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 97  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 133



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 183 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 242

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 243 QGFKITPSHAMKITYAKK 260


>ref|XP_857793.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
           9 [Canis familiaris].
          Length = 253

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 37  DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 96

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 97  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 133



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 176 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 235

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 236 QGFKITPSHAMKITYAKK 253


>ref|XP_857753.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
           8 [Canis familiaris].
          Length = 250

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 37  DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 96

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 97  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 133



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 173 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 232

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 233 QGFKITPSHAMKITYAKK 250


>ref|XP_857709.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
           7 [Canis familiaris].
          Length = 262

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 37  DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 96

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 97  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 133



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 185 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 244

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 245 QGFKITPSHAMKITYAKK 262


>ref|XP_857667.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B isoform
           6 [Canis familiaris].
          Length = 297

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 37  DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 96

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 97  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 133



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 220 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 279

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 280 QGFKITPSHAMKITYAKK 297


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,818,269
Number of extensions: 1551418
Number of successful extensions: 8517
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 8362
Number of HSP's successfully gapped: 30
Length of query: 591
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 483
Effective length of database: 15,274,216
Effective search space: 7377446328
Effective search space used: 7377446328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001319
         (1774 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapi...   365   e-101
Alignment   gi|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sa...   160   3e-39
Alignment   gi|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sa...   160   3e-39
Alignment   gi|NP_060089.1| RNA-binding protein 40 [Homo sapiens].                50   7e-06

>ref|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapiens].
          Length = 282

 Score =  365 bits (938), Expect = e-101
 Identities = 199/282 (70%), Positives = 200/282 (70%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV            SQETPA
Sbjct: 61  EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120

Query: 441 SKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXXX 620
           +KK                        TQ PRIMHH                        
Sbjct: 121 TKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180

Query: 621 XXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 800
                                SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240

Query: 801 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282


>ref|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens].
          Length = 225

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 208 QGFKITPSHAMKITYAKK 225


>ref|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens].
          Length = 225

 Score =  160 bits (406), Expect = 3e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98



 Score =  140 bits (354), Expect = 3e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 208 QGFKITPSHAMKITYAKK 225


>ref|NP_060089.1| RNA-binding protein 40 [Homo sapiens].
          Length = 517

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 102 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 269
           PN  IY+ NL + +++ +LK     Y  FS   Q  + DI + +  +M+GQAF+      
Sbjct: 418 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 477

Query: 270 SATNALRSMQGFPFYDKPMRIQYAKT 347
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 478 AAAKALKEANGYVLFGKPMVVQFARS 503


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,020,649
Number of extensions: 1459393
Number of successful extensions: 7685
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7514
Number of HSP's successfully gapped: 7
Length of query: 591
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,737,052
Effective search space: 7117996116
Effective search space used: 7117996116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001319
         (1774 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus mu...   349   5e-96
Alignment   gi|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus muscu...   349   5e-96
Alignment   gi|XP_003086803.1| PREDICTED: u1 small nuclear ribonucleoprotei...   338   6e-93
Alignment   gi|XP_356179.3| PREDICTED: u1 small nuclear ribonucleoprotein A...   333   3e-91
Alignment   gi|XP_995150.2| PREDICTED: u1 small nuclear ribonucleoprotein A...   319   4e-87
Alignment   gi|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus mus...   160   2e-39
Alignment   gi|NP_001033785.1| RNA-binding protein 40 [Mus musculus].             50   7e-06
Alignment   gi|NP_080319.2| RNA-binding protein 40 [Mus musculus].                50   7e-06

>ref|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus musculus].
          Length = 287

 Score =  349 bits (895), Expect = 5e-96
 Identities = 192/283 (67%), Positives = 197/283 (69%)
 Frame = +3

Query: 78  SMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIF 257
           +M VPETR NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR +KMRGQAFVIF
Sbjct: 6   TMPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIF 65

Query: 258 KEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETP 437
           KEV+SATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGT+V            SQETP
Sbjct: 66  KEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETP 125

Query: 438 ASKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXX 617
           A+KK                         Q PRIMHH                       
Sbjct: 126 AAKK-AVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQ 184

Query: 618 XXXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 797
                                 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL
Sbjct: 185 IPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 244

Query: 798 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 245 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287


>ref|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus musculus].
          Length = 287

 Score =  349 bits (895), Expect = 5e-96
 Identities = 192/283 (67%), Positives = 197/283 (69%)
 Frame = +3

Query: 78  SMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIF 257
           +M VPETR NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR +KMRGQAFVIF
Sbjct: 6   TMPVPETRANHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIF 65

Query: 258 KEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETP 437
           KEV+SATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGT+V            SQETP
Sbjct: 66  KEVTSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETP 125

Query: 438 ASKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXX 617
           A+KK                         Q PRIMHH                       
Sbjct: 126 AAKK-AVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQ 184

Query: 618 XXXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 797
                                 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL
Sbjct: 185 IPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 244

Query: 798 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 245 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287


>ref|XP_003086803.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Mus
           musculus].
          Length = 282

 Score =  338 bits (868), Expect = 6e-93
 Identities = 185/282 (65%), Positives = 190/282 (67%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYIN+LNEKIKKDELKKS YAIFSQFGQILDILVS+SLKMRGQ+FVIFK
Sbjct: 1   MAVPETRPNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           EVSS  NALRSMQGFPFY KPM IQYAKTDSDIIAKMKGTFV            SQE PA
Sbjct: 61  EVSSTINALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPA 120

Query: 441 SKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXXX 620
           +KK                         Q PR+MHH                        
Sbjct: 121 AKKAVQGGAAAPVVGAVQPPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQI 180

Query: 621 XXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 800
                                SENPPNHILFLTNLPEETNELMLSMLF QFPGFKEVRLV
Sbjct: 181 PSRAMPPQQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLV 240

Query: 801 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           PGRHDI FVEFDNEVQAGAARD LQGFKITQNNAMKISFAKK
Sbjct: 241 PGRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 282


>ref|XP_356179.3| PREDICTED: u1 small nuclear ribonucleoprotein A-like isoform 1 [Mus
           musculus].
          Length = 281

 Score =  333 bits (854), Expect = 3e-91
 Identities = 185/282 (65%), Positives = 189/282 (67%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYIN+LNEKIKKDELKKS YAIFSQFGQILDILVS+SLKMRGQ+FVIFK
Sbjct: 1   MAVPETRPNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           EVSS  NALRSMQGFPFY KPM IQYAKTDSDIIAKMKGTFV            SQE PA
Sbjct: 61  EVSSTINALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQEKPA 120

Query: 441 SKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXXX 620
            KK                         Q PR+MHH                        
Sbjct: 121 VKK-GCSGWGSAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQI 179

Query: 621 XXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 800
                                SENPPNHILFLTNLPEETNELMLSMLF QFPGFKEVRLV
Sbjct: 180 PSRAMPPQQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLV 239

Query: 801 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           PGRHDI FVEFDNEVQAGAARD LQGFKITQNNAMKISFAKK
Sbjct: 240 PGRHDIDFVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 281


>ref|XP_995150.2| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Mus
           musculus].
          Length = 309

 Score =  319 bits (818), Expect = 4e-87
 Identities = 180/283 (63%), Positives = 185/283 (65%)
 Frame = +3

Query: 78  SMAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIF 257
           +M V ETR NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS+SLKMRGQ FVIF
Sbjct: 3   TMPVLETRSNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIF 62

Query: 258 KEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETP 437
           KEV+ ATNAL SM GFPFYDKPMRIQY KT+SD IAKMKGTFV            SQETP
Sbjct: 63  KEVTIATNALWSMLGFPFYDKPMRIQYTKTESDNIAKMKGTFVERDHKGEKRKPKSQETP 122

Query: 438 ASKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXX 617
           A+KK                         Q PRIMHH                       
Sbjct: 123 AAKK-AVQGGAAAPVVGAVQPVPGMPPMPQAPRIMHHVPGQPPYMPPAGMIPPTGLAPGQ 181

Query: 618 XXXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL 797
                                 SENPPNHILFLTNLPEETNELMLSMLF QFPGFKE  L
Sbjct: 182 IPPGAMPPQQLMPGQMPPAPPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEAHL 241

Query: 798 VPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           VPG HDIAFVEFDNEVQAGAA DALQGFKITQNNAMKISF KK
Sbjct: 242 VPGCHDIAFVEFDNEVQAGAALDALQGFKITQNNAMKISFVKK 284


>ref|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus musculus].
          Length = 225

 Score =  160 bits (406), Expect = 2e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98



 Score =  140 bits (354), Expect = 2e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 208 QGFKITPSHAMKITYAKK 225


>ref|NP_001033785.1| RNA-binding protein 40 [Mus musculus].
          Length = 514

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
 Frame = +3

Query: 102 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 269
           PN  IY+ NL   +++ +LK     Y  FS   Q  + DI + +  +M+GQAFV      
Sbjct: 416 PNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEK 475

Query: 270 SATNALRSMQGFPFYDKPMRIQYAKT 347
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 476 AAAKALKEANGYVLFGKPMVVQFARS 501


>ref|NP_080319.2| RNA-binding protein 40 [Mus musculus].
          Length = 514

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
 Frame = +3

Query: 102 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 269
           PN  IY+ NL   +++ +LK     Y  FS   Q  + DI + +  +M+GQAFV      
Sbjct: 416 PNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEK 475

Query: 270 SATNALRSMQGFPFYDKPMRIQYAKT 347
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 476 AAAKALKEANGYVLFGKPMVVQFARS 501


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,381,753
Number of extensions: 1196533
Number of successful extensions: 5954
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5769
Number of HSP's successfully gapped: 14
Length of query: 591
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 484
Effective length of database: 12,403,707
Effective search space: 6003394188
Effective search space used: 6003394188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001319
         (1774 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus sc...   369   e-102
Alignment   gi|NP_001070696.1| hypothetical protein LOC768116 [Sus scrofa].      160   2e-39
Alignment   gi|XP_003125932.2| PREDICTED: RNA-binding protein 40-like [Sus ...    50   5e-06
Alignment   gi|XP_003125931.1| PREDICTED: RNA-binding protein 40-like [Sus ...    50   5e-06

>ref|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus scrofa].
          Length = 282

 Score =  369 bits (946), Expect = e-102
 Identities = 201/282 (71%), Positives = 201/282 (71%)
 Frame = +3

Query: 81  MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 260
           MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK
Sbjct: 1   MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60

Query: 261 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVXXXXXXXXXXXXSQETPA 440
           EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV            SQETPA
Sbjct: 61  EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPA 120

Query: 441 SKKXXXXXXXXXXXXXXXXXXXXXXXXTQTPRIMHHXXXXXXXXXXXXXXXXXXXXXXXX 620
           SKK                        TQTPRIMHH                        
Sbjct: 121 SKKAVQGGAAAPVVGAVQGPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQI 180

Query: 621 XXXXXXXXXXXXXXXXXXXXXSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 800
                                SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV
Sbjct: 181 PPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240

Query: 801 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 926
           PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282


>ref|NP_001070696.1| hypothetical protein LOC768116 [Sus scrofa].
          Length = 225

 Score =  160 bits (406), Expect = 2e-39
 Identities = 73/97 (75%), Positives = 90/97 (92%)
 Frame = +3

Query: 93  ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSS 272
           + RPNHTIYINN+N+KIKK+ELK+SLYA+FSQFG ++DI+  +++KMRGQAFVIFKE+ S
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 273 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTF 383
           +TNALR +QGFPFY KPMRIQYAKTDSDII+KM+GTF
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98



 Score =  140 bits (354), Expect = 2e-33
 Identities = 67/78 (85%), Positives = 75/78 (96%)
 Frame = +3

Query: 693 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDAL 872
           PPN+ILFL NLPEETNE+MLSMLFNQFPGFKEVRLVPGRHDIAFVEF+N+ QAGAARDAL
Sbjct: 148 PPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDAL 207

Query: 873 QGFKITQNNAMKISFAKK 926
           QGFKIT ++AMKI++AKK
Sbjct: 208 QGFKITPSHAMKITYAKK 225


>ref|XP_003125932.2| PREDICTED: RNA-binding protein 40-like [Sus scrofa].
          Length = 669

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 102 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 269
           PN  IY+ NL + +++ +LK     Y  FS   Q  + DI + +  +M+GQAF+      
Sbjct: 570 PNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 629

Query: 270 SATNALRSMQGFPFYDKPMRIQYAKT 347
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 630 AAAKALKEANGYVLFGKPMVVQFARS 655


>ref|XP_003125931.1| PREDICTED: RNA-binding protein 40-like [Sus scrofa].
          Length = 515

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
 Frame = +3

Query: 102 PNHTIYINNLNEKIKKDELKKSL--YAIFSQFGQ--ILDILVSRSLKMRGQAFVIFKEVS 269
           PN  IY+ NL + +++ +LK     Y  FS   Q  + DI + +  +M+GQAF+      
Sbjct: 416 PNCRIYVKNLAKHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 475

Query: 270 SATNALRSMQGFPFYDKPMRIQYAKT 347
           +A  AL+   G+  + KPM +Q+A++
Sbjct: 476 AAAKALKEANGYVLFGKPMVVQFARS 501


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,506,965
Number of extensions: 1506798
Number of successful extensions: 5186
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5091
Number of HSP's successfully gapped: 6
Length of query: 591
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 486
Effective length of database: 8,729,747
Effective search space: 4242657042
Effective search space used: 4242657042
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001319
         (1774 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                         361   9e-97

>Sscrofa_Chr06 
||          Length = 157765593

 Score =  361 bits (182), Expect = 9e-97
 Identities = 182/182 (100%)
 Strand = Plus / Plus

                                                                            
Query: 326      gcgcatccagtacgccaagaccgactcggatatcatcgccaagatgaagggcaccttcgt 385
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44662621 gcgcatccagtacgccaagaccgactcggatatcatcgccaagatgaagggcaccttcgt 44662680

                                                                            
Query: 386      ggagcgggaccgcaagcgggagaagaggaagcccaagagccaagagaccccggcctccaa 445
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44662681 ggagcgggaccgcaagcgggagaagaggaagcccaagagccaagagaccccggcctccaa 44662740

                                                                            
Query: 446      gaaggccgtgcagggcggggcagccgcccccgtggtgggcgccgttcagggtcctgtccc 505
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44662741 gaaggccgtgcagggcggggcagccgcccccgtggtgggcgccgttcagggtcctgtccc 44662800

                  
Query: 506      gg 507
                ||
Sbjct: 44662801 gg 44662802



 Score =  345 bits (174), Expect = 5e-92
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                            
Query: 153      gagctgaagaagtccctgtacgccatcttctcccagtttggccagatcctggatatcctg 212
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44660030 gagctgaagaagtccctgtacgccatcttctcccagtttggccagatcctggatatcctg 44660089

                                                                            
Query: 213      gtctcacgaagcctgaagatgaggggccaggcctttgtcatcttcaaggaggtcagcagc 272
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44660090 gtctcacgaagcctgaagatgaggggccaggcctttgtcatcttcaaggaggtcagcagc 44660149

                                                                      
Query: 273      gccaccaatgccctgcgctccatgcagggtttccccttctacgacaagcccatg 326
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44660150 gccaccaatgccctgcgctccatgcagggtttccccttctacgacaagcccatg 44660203



 Score =  319 bits (161), Expect = 3e-84
 Identities = 161/161 (100%)
 Strand = Plus / Plus

                                                                            
Query: 770      gttccctggcttcaaggaggtccggctggtccctgggcggcacgacatcgcctttgtgga 829
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44666845 gttccctggcttcaaggaggtccggctggtccctgggcggcacgacatcgcctttgtgga 44666904

                                                                            
Query: 830      gtttgacaacgaggtgcaggcgggggccgctcgcgatgccctgcagggcttcaagatcac 889
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44666905 gtttgacaacgaggtgcaggcgggggccgctcgcgatgccctgcagggcttcaagatcac 44666964

                                                         
Query: 890      ccagaacaacgccatgaagatctccttcgccaagaagtagc 930
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 44666965 ccagaacaacgccatgaagatctccttcgccaagaagtagc 44667005



 Score =  305 bits (154), Expect = 4e-80
 Identities = 168/175 (96%)
 Strand = Plus / Plus

                                                                            
Query: 506      gggcatgccgccgatgactcagacaccccgcatcatgcaccacatgccgggccagcctcc 565
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44664772 gggcatgccgccgatgactcagacaccccgcatcatgcaccacatgccgggccagcctcc 44664831

                                                                            
Query: 566      ctacatgccgccccctggcatgatcccgcctccaggcctcgcgcccggccagatcccgcc 625
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44664832 ctacatgccgccccctggcatgatcccgcctccaggcctcgcgcccggccagatcccgcc 44664891

                                                                       
Query: 626      cggggccatgnnnnnnnagcagcttatgcctgggcagatgccacctgcccagcct 680
                ||||||||||       ||||||||||||||||||||||||||||||||||||||
Sbjct: 44664892 cggggccatgcccccccagcagcttatgcctgggcagatgccacctgcccagcct 44664946



 Score =  190 bits (96), Expect = 2e-45
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                            
Query: 58       gctctgtctcagcaactccttccatggcagttcccgagacccgtcccaatcacactattt 117
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44656470 gctctgtctcagcaactccttccatggcagttcccgagacccgtcccaatcacactattt 44656529

                                                    
Query: 118      atatcaacaatctcaacgagaagatcaagaaggatg 153
                ||||||||||||||||||||||||||||||||||||
Sbjct: 44656530 atatcaacaatctcaacgagaagatcaagaaggatg 44656565



 Score =  180 bits (91), Expect = 2e-42
 Identities = 91/91 (100%)
 Strand = Plus / Plus

                                                                            
Query: 681      ctttcagaaaacccaccaaatcacatcttgttcctcaccaacctgccggaggagaccaac 740
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44665349 ctttcagaaaacccaccaaatcacatcttgttcctcaccaacctgccggaggagaccaac 44665408

                                               
Query: 741      gagctcatgctttccatgcttttcaaccagt 771
                |||||||||||||||||||||||||||||||
Sbjct: 44665409 gagctcatgctttccatgcttttcaaccagt 44665439



 Score =  109 bits (55), Expect = 5e-21
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4        tttgtggtcggcgcacagcaacgcagaaggtgccgcttgcgggagctgcgacttg 58
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44655948 tttgtggtcggcgcacagcaacgcagaaggtgccgcttgcgggagctgcgacttg 44656002


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,058,976
Number of extensions: 312
Number of successful extensions: 312
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 7
Length of query: 1774
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1752
Effective length of database: 2,808,408,574
Effective search space: 4920331821648
Effective search space used: 4920331821648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)