Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001323
(1477 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776851.1| protein Plunc precursor [Bos taurus]. 187 3e-47
>ref|NP_776851.1| protein Plunc precursor [Bos taurus].
Length = 255
Score = 187 bits (474), Expect = 3e-47
Identities = 100/153 (65%), Positives = 112/153 (73%)
Frame = +2
Query: 194 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 373
SP DL EG+LGIL NLPLLDILK GN P PLL
Sbjct: 43 SPPDLAGSLTGALSNGLLSEGLLGILENLPLLDILKTRGNAPSGLLGSLLGKVTSLTPLL 102
Query: 374 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVEL 553
N+I++L+IT+PQLLELGLVQSPDGHRLYVTIPL ++LNVKTS+VGSLLKLAVKLNITVEL
Sbjct: 103 NNIIELKITNPQLLELGLVQSPDGHRLYVTIPLGMILNVKTSLVGSLLKLAVKLNITVEL 162
Query: 554 LAVKDEQGKSHLVLGDCTHSPGSLKISLLDG*G 652
LAV DEQ HLV+G+CTHSPGSL+I LLDG G
Sbjct: 163 LAVTDEQKHVHLVVGNCTHSPGSLQIFLLDGLG 195
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,470,444
Number of extensions: 1818457
Number of successful extensions: 7869
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7848
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 386
Effective length of database: 14,174,046
Effective search space: 5471181756
Effective search space used: 5471181756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001323
(1477 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852441.1| PREDICTED: similar to Protein Plunc precursor (... 182 9e-46
Alignment gi|XP_863018.1| PREDICTED: similar to Long palate, lung and nas... 66 8e-11
Alignment gi|XP_534384.1| PREDICTED: similar to Long palate, lung and nas... 66 8e-11
>ref|XP_852441.1| PREDICTED: similar to Protein Plunc precursor (Palate lung and
nasal epithelium clone protein) (Lung specific X
protein) (Nasopharyngeal carcinoma-related protein)
(Tracheal epithelium enriched protein) (Secretory
protein in upper respiratory tracts) (Von Ebn... [Canis
familiaris].
Length = 255
Score = 182 bits (461), Expect = 9e-46
Identities = 102/193 (52%), Positives = 119/193 (61%), Gaps = 6/193 (3%)
Frame = +2
Query: 86 MSQVAGLIVFCG------XXXXXXXXXXXXXXXXXXXXXXDQSPTDLVXXXXXXXXXXXX 247
M Q GLIVFCG D SPTDL
Sbjct: 1 MFQTGGLIVFCGLLAQTTTLLEALSLPLEHTLFLEATPGQDPSPTDLAGDLTDGLSSGLL 60
Query: 248 XEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGL 427
G+L IL NLPLL+ILK GG T +PLL+ I++L+IT+PQLLELGL
Sbjct: 61 SGGLLDILENLPLLNILKTGGGTSGGLLGGLLGKVTSMVPLLDSIIELKITNPQLLELGL 120
Query: 428 VQSPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCT 607
VQSPDGHRLYVTIPL +VLNV T + SL+KLAVKLNIT E+LAVK++QGK HL+LGDCT
Sbjct: 121 VQSPDGHRLYVTIPLGIVLNVNTPLTSSLVKLAVKLNITAEILAVKNDQGKIHLILGDCT 180
Query: 608 HSPGSLKISLLDG 646
HSPGSL+ISLL+G
Sbjct: 181 HSPGSLQISLLNG 193
>ref|XP_863018.1| PREDICTED: similar to Long palate, lung and nasal epithelium
carcinoma associated protein 1 precursor (Von Ebner
minor salivary gland protein) (VEMSGP) isoform 2 [Canis
familiaris].
Length = 475
Score = 66.2 bits (160), Expect = 8e-11
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +2
Query: 266 ILGNLPLLDIL--KAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSP 439
IL LPLL + K G P +LN I+ L++T +L+L + S
Sbjct: 52 ILQQLPLLSSIREKPAGGIPILGNVVNS--------ILNHIIWLKVTSANILQLQVEPSD 103
Query: 440 DGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPG 619
+G L V IPL +V + T +V +++++ ++ + + +E+G +HLVL DC+ S G
Sbjct: 104 EGQGLTVKIPLDMVAGLNTPLVKTIVEMHMETEVQAIIRVNTNERGHAHLVLADCSTSQG 163
Query: 620 SLKISLL 640
SL+ISLL
Sbjct: 164 SLRISLL 170
>ref|XP_534384.1| PREDICTED: similar to Long palate, lung and nasal epithelium
carcinoma associated protein 1 precursor (Von Ebner
minor salivary gland protein) (VEMSGP) isoform 1 [Canis
familiaris].
Length = 475
Score = 66.2 bits (160), Expect = 8e-11
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Frame = +2
Query: 266 ILGNLPLLDIL--KAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSP 439
IL LPLL + K G P +LN I+ L++T +L+L + S
Sbjct: 52 ILQQLPLLSSIREKPAGGIPILGNVVNS--------ILNHIIWLKVTSANILQLQVEPSD 103
Query: 440 DGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPG 619
+G L V IPL +V + T +V +++++ ++ + + +E+G +HLVL DC+ S G
Sbjct: 104 EGQGLTVKIPLDMVAGLNTPLVKTIVEMHMETEVQAIIRVNTNERGHAHLVLADCSTSQG 163
Query: 620 SLKISLL 640
SL+ISLL
Sbjct: 164 SLRISLL 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,024,149
Number of extensions: 1720621
Number of successful extensions: 7526
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7481
Number of HSP's successfully gapped: 3
Length of query: 492
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 385
Effective length of database: 15,307,552
Effective search space: 5893407520
Effective search space used: 5893407520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001323
(1477 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230122.1| protein Plunc precursor [Homo sapiens]. 172 5e-43
Alignment gi|NP_057667.1| protein Plunc precursor [Homo sapiens]. 172 5e-43
Alignment gi|NP_570913.1| protein Plunc precursor [Homo sapiens]. 172 5e-43
>ref|NP_001230122.1| protein Plunc precursor [Homo sapiens].
Length = 256
Score = 172 bits (437), Expect = 5e-43
Identities = 94/154 (61%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Frame = +2
Query: 194 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 373
SPT L G+LGIL NLPLLDILK GG T IP L
Sbjct: 43 SPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGL 102
Query: 374 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVG-SLLKLAVKLNITVE 550
N+I+D+++TDPQLLELGLVQSPDGHRLYVTIPL + L V T +VG SLL+LAVKL+IT E
Sbjct: 103 NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAE 162
Query: 551 LLAVKDEQGKSHLVLGDCTHSPGSLKISLLDG*G 652
+LAV+D+Q + HLVLGDCTHSPGSL+ISLLDG G
Sbjct: 163 ILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLG 196
>ref|NP_057667.1| protein Plunc precursor [Homo sapiens].
Length = 256
Score = 172 bits (437), Expect = 5e-43
Identities = 94/154 (61%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Frame = +2
Query: 194 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 373
SPT L G+LGIL NLPLLDILK GG T IP L
Sbjct: 43 SPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGL 102
Query: 374 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVG-SLLKLAVKLNITVE 550
N+I+D+++TDPQLLELGLVQSPDGHRLYVTIPL + L V T +VG SLL+LAVKL+IT E
Sbjct: 103 NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAE 162
Query: 551 LLAVKDEQGKSHLVLGDCTHSPGSLKISLLDG*G 652
+LAV+D+Q + HLVLGDCTHSPGSL+ISLLDG G
Sbjct: 163 ILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLG 196
>ref|NP_570913.1| protein Plunc precursor [Homo sapiens].
Length = 256
Score = 172 bits (437), Expect = 5e-43
Identities = 94/154 (61%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Frame = +2
Query: 194 SPTDLVXXXXXXXXXXXXXEGVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLL 373
SPT L G+LGIL NLPLLDILK GG T IP L
Sbjct: 43 SPTGLAGSLTNALSNGLLSGGLLGILENLPLLDILKPGGGTSGGLLGGLLGKVTSVIPGL 102
Query: 374 NDIVDLQITDPQLLELGLVQSPDGHRLYVTIPLSLVLNVKTSVVG-SLLKLAVKLNITVE 550
N+I+D+++TDPQLLELGLVQSPDGHRLYVTIPL + L V T +VG SLL+LAVKL+IT E
Sbjct: 103 NNIIDIKVTDPQLLELGLVQSPDGHRLYVTIPLGIKLQVNTPLVGASLLRLAVKLDITAE 162
Query: 551 LLAVKDEQGKSHLVLGDCTHSPGSLKISLLDG*G 652
+LAV+D+Q + HLVLGDCTHSPGSL+ISLLDG G
Sbjct: 163 ILAVRDKQERIHLVLGDCTHSPGSLQISLLDGLG 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,007,768
Number of extensions: 1687294
Number of successful extensions: 7631
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7593
Number of HSP's successfully gapped: 3
Length of query: 492
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 385
Effective length of database: 14,770,016
Effective search space: 5686456160
Effective search space used: 5686456160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001323
(1477 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035256.2| protein Plunc precursor [Mus musculus]. 182 8e-46
Alignment gi|NP_080266.2| palate lung and nasal carcinoma-like protein pr... 130 2e-30
>ref|NP_035256.2| protein Plunc precursor [Mus musculus].
Length = 278
Score = 182 bits (461), Expect = 8e-46
Identities = 91/131 (69%), Positives = 106/131 (80%)
Frame = +2
Query: 254 GVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQ 433
G+LGIL N+PLLD++K+GG ++PLLN+I+D++ITDPQLLELGLVQ
Sbjct: 88 GLLGILENIPLLDVIKSGGGNSNGLVGGLLGKLTSSVPLLNNILDIKITDPQLLELGLVQ 147
Query: 434 SPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHS 613
SPDGHRLYVTIPL L LNV VVGSLL+LAVKLNIT E+LAVKD QG+ HLVLGDCTHS
Sbjct: 148 SPDGHRLYVTIPLGLTLNVNMPVVGSLLQLAVKLNITAEVLAVKDNQGRIHLVLGDCTHS 207
Query: 614 PGSLKISLLDG 646
PGSLKISLL+G
Sbjct: 208 PGSLKISLLNG 218
>ref|NP_080266.2| palate lung and nasal carcinoma-like protein precursor [Mus
musculus].
Length = 270
Score = 130 bits (328), Expect = 2e-30
Identities = 68/130 (52%), Positives = 94/130 (72%)
Frame = +2
Query: 254 GVLGILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQ 433
G+L L ++PLL+ ++ G+ +IPLLN+I+D+++T+PQLLE+GLVQ
Sbjct: 81 GILSFLEHIPLLNYVRPTGSNAGGLVGVLGKVIS-SIPLLNNILDIRVTNPQLLEIGLVQ 139
Query: 434 SPDGHRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHS 613
S D HRLYVTIPL L V T VVGSLL+L+VKL++T E+ AV+D G+S LV+GDC +
Sbjct: 140 SYDFHRLYVTIPLGFDLRVNTLVVGSLLELSVKLDVTAEVYAVRDSYGRSRLVIGDCIYP 199
Query: 614 PGSLKISLLD 643
PGSL+ISLL+
Sbjct: 200 PGSLRISLLN 209
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,898,629
Number of extensions: 1410709
Number of successful extensions: 6232
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6212
Number of HSP's successfully gapped: 2
Length of query: 492
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 387
Effective length of database: 12,463,779
Effective search space: 4823482473
Effective search space used: 4823482473
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001323
(1477 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005727.1| protein Plunc precursor [Sus scrofa]. 251 7e-67
Alignment gi|NP_001094502.1| long palate, lung and nasal epithelium carci... 59 5e-09
>ref|NP_001005727.1| protein Plunc precursor [Sus scrofa].
Length = 249
Score = 251 bits (641), Expect = 7e-67
Identities = 140/192 (72%), Positives = 140/192 (72%)
Frame = +2
Query: 86 MSQVAGLIVFCGXXXXXXXXXXXXXXXXXXXXXXDQSPTDLVXXXXXXXXXXXXXEGVLG 265
M QVAGLIVFCG DQSPTDLV EGVLG
Sbjct: 1 MFQVAGLIVFCGLLAQTTALLEALPLGKALPLALDQSPTDLVGSLTSTLSNGLLSEGVLG 60
Query: 266 ILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSPDG 445
ILGNLPLLDILKAGGNTP TIPLLNDIVDLQITDPQLLELGLVQSPDG
Sbjct: 61 ILGNLPLLDILKAGGNTPSGLLGGLLGKLSSTIPLLNDIVDLQITDPQLLELGLVQSPDG 120
Query: 446 HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL 625
HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL
Sbjct: 121 HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL 180
Query: 626 KISLLDG*GQRV 661
KISLLDG G V
Sbjct: 181 KISLLDGLGPLV 192
Score = 61.2 bits (147), Expect = 1e-09
Identities = 31/36 (86%), Positives = 32/36 (88%)
Frame = +1
Query: 1123 LGPLVPQDLLDSITGVLDNVLPGLVQGEVSGVKVEV 1230
LGPLVPQDLLDSITGVLDNVLPGLVQGEV + EV
Sbjct: 188 LGPLVPQDLLDSITGVLDNVLPGLVQGEVCPLVNEV 223
>ref|NP_001094502.1| long palate, lung and nasal epithelium carcinoma-associated protein
1 precursor [Sus scrofa].
Length = 472
Score = 59.3 bits (142), Expect = 5e-09
Identities = 36/125 (28%), Positives = 64/125 (51%)
Frame = +2
Query: 266 ILGNLPLLDILKAGGNTPXXXXXXXXXXXXXTIPLLNDIVDLQITDPQLLELGLVQSPDG 445
+L LPLLD ++ +L I L++T +L+L + P+G
Sbjct: 52 VLQQLPLLDAMQESSQ---------GVLARLVSSILKYITWLKVTSASILQLQVQPLPNG 102
Query: 446 HRLYVTIPLSLVLNVKTSVVGSLLKLAVKLNITVELLAVKDEQGKSHLVLGDCTHSPGSL 625
L V IPL +V + T +V ++++L +++ + + E G+ LVL +C+++ GSL
Sbjct: 103 QELLVKIPLDMVAGLNTPLVKTIVELHMQVEVEAIIHVETSETGEDQLVLSNCSNTRGSL 162
Query: 626 KISLL 640
+ISLL
Sbjct: 163 RISLL 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,029,871
Number of extensions: 1385085
Number of successful extensions: 4963
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4950
Number of HSP's successfully gapped: 3
Length of query: 492
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,779,541
Effective search space: 3415241449
Effective search space used: 3415241449
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001323
(1477 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 1045 0.0
>Sscrofa_Chr17
|| Length = 69701581
Score = 1045 bits (527), Expect = 0.0
Identities = 527/527 (100%)
Strand = Plus / Plus
Query: 789 taggagagtaggtgcttcccatgtatcatctcaatgaatcctcatgacaactacatacta 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709424 taggagagtaggtgcttcccatgtatcatctcaatgaatcctcatgacaactacatacta 41709483
Query: 849 agcactgttggttcatttacggattctacacagttttatcgaacacctactctggttgga 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709484 agcactgttggttcatttacggattctacacagttttatcgaacacctactctggttgga 41709543
Query: 909 actgtgtctattctacatgcgcccagtgtgtgcactgctgtggagggtgtcactccttct 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709544 actgtgtctattctacatgcgcccagtgtgtgcactgctgtggagggtgtcactccttct 41709603
Query: 969 ggtgggtcccttgttagtgtgacgtggatgtggatgcacgaggctctgtctctgtgacac 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709604 ggtgggtcccttgttagtgtgacgtggatgtggatgcacgaggctctgtctctgtgacac 41709663
Query: 1029 agtgatgagactgcgatgggcacactggcccctccgaaggctcctccataccagctccag 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709664 agtgatgagactgcgatgggcacactggcccctccgaaggctcctccataccagctccag 41709723
Query: 1089 gcccctgtgctgcccatggcttttctctttcagattgggccccctcgtccctcaagacct 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709724 gcccctgtgctgcccatggcttttctctttcagattgggccccctcgtccctcaagacct 41709783
Query: 1149 tcttgacagcatcactggagtcttggataatgtccttcctgggctggtgcagggcgaggt 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709784 tcttgacagcatcactggagtcttggataatgtccttcctgggctggtgcagggcgaggt 41709843
Query: 1209 aagtggggtaaaagtggaggttcctgatccttggctcttggggcttctcgggctaaaaga 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709844 aagtggggtaaaagtggaggttcctgatccttggctcttggggcttctcgggctaaaaga 41709903
Query: 1269 agcccctggggtgagcttttctgaaccactcaatttgataagtaaat 1315
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709904 agcccctggggtgagcttttctgaaccactcaatttgataagtaaat 41709950
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 496 gtctgtggtcggaagtctgctaaagctggccgtgaagctcaacatcactgtagaactctt 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709131 gtctgtggtcggaagtctgctaaagctggccgtgaagctcaacatcactgtagaactctt 41709190
Query: 556 agctgtgaaagacgaacaggggaagagccacctggtccttggtgactgcactcactcccc 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709191 agctgtgaaagacgaacaggggaagagccacctggtccttggtgactgcactcactcccc 41709250
Query: 616 tggcagcctgaaaatctccctgcttgatgggtgaggccagagggtcagctgttccaggcc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709251 tggcagcctgaaaatctccctgcttgatgggtgaggccagagggtcagctgttccaggcc 41709310
Query: 676 agagacaatcaaatgggat 694
|||||||||||||||||||
Sbjct: 41709311 agagacaatcaaatgggat 41709329
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 228 ctctcagcaatggcctgctctctgagggtgtgctgggcattcttggaaaccttccactct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706858 ctctcagcaatggcctgctctctgagggtgtgctgggcattcttggaaaccttccactct 41706917
Query: 288 tggacatcctgaaggctggagggaacactcccagtggcctgctgggaggcctgcttggga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706918 tggacatcctgaaggctggagggaacactcccagtggcctgctgggaggcctgcttggga 41706977
Query: 348 aactgtcctcaacgatccctctcctgaacgacatcgttga 387
||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706978 aactgtcctcaacgatccctctcctgaacgacatcgttga 41707017
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Plus
Query: 71 cagacatcaagagagatgtctcaagttgcaggcctcattgtcttctgtgggctgctggcc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706528 cagacatcaagagagatgtctcaagttgcaggcctcattgtcttctgtgggctgctggcc 41706587
Query: 131 cagaccacagcgctgctggaagccctgcccctgggcaaggctctgcccttggccctggac 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706588 cagaccacagcgctgctggaagccctgcccctgggcaaggctctgcccttggccctggac 41706647
Query: 191 caaagtcccacagatcttgttggaagcttgacaagta 227
|||||||||||||||||||||||||||||||||||||
Sbjct: 41706648 caaagtcccacagatcttgttggaagcttgacaagta 41706684
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 388 tctgcagatcactgatccccagctgctggaactcggccttgtgcagagccccgatggcca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41708433 tctgcagatcactgatccccagctgctggaactcggccttgtgcagagccccgatggcca 41708492
Query: 448 tcgtctctatgtcaccatccctctgagtctggtcctcaatgtgaaaacgt 497
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41708493 tcgtctctatgtcaccatccctctgagtctggtcctcaatgtgaaaacgt 41708542
Score = 176 bits (89), Expect = 2e-41
Identities = 98/101 (97%)
Strand = Plus / Plus
Query: 1377 aaaatatattgttttttgctctgagccagtccctggatgtgtccacactacccctgcaac 1436
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 41710012 aaaatatattgttttttgctctgagccagtccctggatgtgtccacactacccctgaaac 41710071
Query: 1437 agattggctcctggtccaggaagctcccagtccaccccaac 1477
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 41710072 agattggctcctgtcccaggaagctcccagtccaccccaac 41710112
Score = 137 bits (69), Expect = 2e-29
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 1 gagacggccttcccaggagaagaaagccaggaagaggagaccaggacagccaccaaaacc 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 41704924 gagacggccttcccaggagaagcaagccaggaagaggagaccaggacagccaccaaaacc 41704983
Query: 61 tctgggaagtcag 73
|||||||||||||
Sbjct: 41704984 tctgggaagtcag 41704996
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,893,503
Number of extensions: 374
Number of successful extensions: 374
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 7
Length of query: 1477
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1456
Effective length of database: 2,808,413,156
Effective search space: 4089049555136
Effective search space used: 4089049555136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)