Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001336
(2122 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776456.1| cathepsin B precursor [Bos taurus]. 614 e-176
Alignment gi|XP_002685665.1| PREDICTED: tubulointerstitial nephritis anti... 146 6e-35
Alignment gi|XP_887401.3| PREDICTED: tubulointerstitial nephritis antigen... 146 6e-35
Alignment gi|NP_001030279.1| tubulointerstitial nephritis antigen [Bos ta... 133 5e-31
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 108 1e-23
Alignment gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus]. 93 1e-18
Alignment gi|NP_001071303.1| cathepsin Z precursor [Bos taurus]. 86 2e-16
Alignment gi|NP_001028787.1| cathepsin S precursor [Bos taurus]. 82 2e-15
Alignment gi|NP_001077155.1| cathepsin L1 [Bos taurus]. 80 7e-15
Alignment gi|NP_776457.1| cathepsin L2 precursor [Bos taurus]. 79 1e-14
>ref|NP_776456.1| cathepsin B precursor [Bos taurus].
Length = 335
Score = 614 bits (1584), Expect = e-176
Identities = 281/335 (83%), Positives = 296/335 (88%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MWR R SL+F PLSDELVNF+NKQNTTW AGHNFYNVDLSYVKKLCG
Sbjct: 1 MWRLLATLSCLLVLTSARSSLYFPPLSDELVNFVNKQNTTWKAGHNFYNVDLSYVKKLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
LGGPKLPQR AFAAD++LP+SFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 AILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICI SNGRVNVEVSAEDMLT FPSGAWNFWTKKGLVSGGLY+SHVGCR
Sbjct: 121 ICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSK CEPGY+PSYKEDKHFGCSSYS++ NEKEIM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAF+VYSDFL YKSGVYQHV+G++MGGHAIRILGWGVENGTPYWLVGNSW
Sbjct: 241 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESEIVAG+PCT +
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEIVAGMPCTHQY 335
>ref|XP_002685665.1| PREDICTED: tubulointerstitial nephritis antigen-like 1-like [Bos
taurus].
Length = 534
Score = 146 bits (369), Expect = 6e-35
Identities = 98/330 (29%), Positives = 153/330 (46%), Gaps = 29/330 (8%)
Frame = +2
Query: 221 LSDELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQRAAFAADM---- 379
+ ++++ IN + W AG++ F+ + L ++ GT + ++F A+M
Sbjct: 209 VDEDMIEAINHGDYGWRAGNHSAFWGMTLDEGIRYRLGTV-------RPSSFVANMNEIH 261
Query: 380 -------ILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNV 538
+LP++F+A E+WPN I + DQG+C WAF SDR+ I S G ++
Sbjct: 262 TVLGPGEVLPRTFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMSP 319
Query: 539 EVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLY--DSHVGCRPYSIPPCEH 712
+S +++L+ GAW F ++G+VS Y H PPC
Sbjct: 320 VLSPQNLLSCDTHNQQGCRGGRL-DGAWWFLRRRGVVSDHCYPFSGHGRDEAVPAPPCMM 378
Query: 713 HVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPV 892
H G G ++ C Y + D + +Y + NEKEIM E+ +NGPV
Sbjct: 379 HSRAM-----GRGKRQATAR-CPNSYV--HANDIYQVTPAYRLGSNEKEIMKELMENGPV 430
Query: 893 EGAFTVYSDFLQYKSGVYQHVTGDL--------MGGHAIRILGWGVE-----NGTPYWLV 1033
+ V+ DF Y+SG+Y H L G H+++I GWG E YW
Sbjct: 431 QALMEVHEDFFLYQSGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTIKYWTA 490
Query: 1034 GNSWNTDWGDNGFFKILRGQDHCGIESEIV 1123
NSW WG+ G F+I+RG + C IES ++
Sbjct: 491 ANSWGPAWGERGHFRIVRGANECDIESFVL 520
>ref|XP_887401.3| PREDICTED: tubulointerstitial nephritis antigen-like 1 isoform 2 [Bos
taurus].
Length = 534
Score = 146 bits (369), Expect = 6e-35
Identities = 98/330 (29%), Positives = 153/330 (46%), Gaps = 29/330 (8%)
Frame = +2
Query: 221 LSDELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQRAAFAADM---- 379
+ ++++ IN + W AG++ F+ + L ++ GT + ++F A+M
Sbjct: 209 VDEDMIEAINHGDYGWRAGNHSAFWGMTLDEGIRYRLGTV-------RPSSFVANMNEIH 261
Query: 380 -------ILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNV 538
+LP++F+A E+WPN I + DQG+C WAF SDR+ I S G ++
Sbjct: 262 TVLGPGEVLPRTFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMSP 319
Query: 539 EVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLY--DSHVGCRPYSIPPCEH 712
+S +++L+ GAW F ++G+VS Y H PPC
Sbjct: 320 VLSPQNLLSCDTHNQQGCRGGRL-DGAWWFLRRRGVVSDHCYPFSGHGRDEAVPAPPCMM 378
Query: 713 HVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPV 892
H G G ++ C Y + D + +Y + NEKEIM E+ +NGPV
Sbjct: 379 HSRAM-----GRGKRQATAR-CPNSYV--HANDIYQVTPAYRLGSNEKEIMKELMENGPV 430
Query: 893 EGAFTVYSDFLQYKSGVYQHVTGDL--------MGGHAIRILGWGVE-----NGTPYWLV 1033
+ V+ DF Y+SG+Y H L G H+++I GWG E YW
Sbjct: 431 QALMEVHEDFFLYQSGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTIKYWTA 490
Query: 1034 GNSWNTDWGDNGFFKILRGQDHCGIESEIV 1123
NSW WG+ G F+I+RG + C IES ++
Sbjct: 491 ANSWGPAWGERGHFRIVRGANECDIESFVL 520
>ref|NP_001030279.1| tubulointerstitial nephritis antigen [Bos taurus].
Length = 476
Score = 133 bits (335), Expect = 5e-31
Identities = 100/338 (29%), Positives = 144/338 (42%), Gaps = 30/338 (8%)
Frame = +2
Query: 203 SLHFQPLSDELVNFINKQNTTWTAGH--NFYNVDLSY-VKKLCGTFLGGPKLPQRAAFAA 373
S H + L+ +NK + WTA + F+ + L K GT P L A
Sbjct: 150 SQHVCLVQPGLIEHVNKGDYGWTAQNYSQFWGMTLEEGFKYRLGTLPPSPLLLSMNEVTA 209
Query: 374 DMI----LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVE 541
+ LP+ F A +WP DQ +C + WAF +DRI I+S GR
Sbjct: 210 SLTKTTDLPEFFIASYKWPGWT--HGPLDQKNCAASWAFSTASVAADRIAIQSQGRYTAN 267
Query: 542 VSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVN 721
+S +++++ AW + K+GLVS Y P N
Sbjct: 268 LSPQNLISCCAKKRHGCNSGSVDR-AWWYLRKRGLVSHACY------------PLFKDQN 314
Query: 722 GSRPPCT------GEGD---TPKCSKICEPGYTPSYKEDKHFGCSS-YSISRNEKEIMAE 871
+ C G G T C E K ++ + CS Y +S NE EIM E
Sbjct: 315 ATNNGCAMASRSDGRGKRHATTPCPNSIE-------KSNRIYQCSPPYRVSSNETEIMRE 367
Query: 872 IYKNGPVEGAFTVYSDFLQYKSGVYQHVTGD--------LMGGHAIRILGWGVENGT--- 1018
I +NGPV+ V+ DF YK+G+Y+H+T HA+++ GWG G
Sbjct: 368 IMQNGPVQAIMQVHEDFFNYKTGIYRHITSTNEDSEKYRKFRTHAVKLTGWGTLRGAQGQ 427
Query: 1019 --PYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVA 1126
+W+ NSW WG+NG+F+ILRG + IE I+A
Sbjct: 428 KEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIA 465
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 108 bits (271), Expect = 1e-23
Identities = 90/320 (28%), Positives = 137/320 (42%), Gaps = 18/320 (5%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGH--NFYNVDLSYVKKLCGTFLGGPKLPQRAAFAAD-----MILP 388
+ V IN +WTA + + L + + G P+ A A+ + LP
Sbjct: 173 DFVKAINAIQKSWTAAPYMEYETLTLKEMIRRGGGHSRRIPRPKPAPITAEIQKKILHLP 232
Query: 389 KSFDAREQWPNCPTIK---EIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDM 559
S+D W N I +R+QGSCGSC++F ++ + RI I +N +S +++
Sbjct: 233 TSWD----WRNVHGINFVTPVRNQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEV 288
Query: 560 LTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPC 739
++ + A + GLV C PY+ G+ PC
Sbjct: 289 VSCSQYAQGCEGGFPYLI-AGKYAQDFGLVEED-------CFPYT---------GTDSPC 331
Query: 740 TGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSD 919
+ G Y + H+ Y NE + E+ GP+ AF VY D
Sbjct: 332 R-----------LKEGCFRYYSSEYHYVGGFYG-GCNEALMKLELVHQGPMAVAFEVYDD 379
Query: 920 FLQYKSGVYQHV------TGDLMGGHAIRILGWGVE--NGTPYWLVGNSWNTDWGDNGFF 1075
FL Y+ GVY H + HA+ ++G+G + +G YW+V NSW T WG+NG+F
Sbjct: 380 FLHYRKGVYHHTGLRDPFNPFELTNHAVLLVGYGTDAASGLDYWIVKNSWGTSWGENGYF 439
Query: 1076 KILRGQDHCGIESEIVAGIP 1135
+I RG D C IES +A P
Sbjct: 440 RIRRGTDECAIESIALAATP 459
>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
Length = 335
Score = 92.8 bits (229), Expect = 1e-18
Identities = 81/303 (26%), Positives = 135/303 (44%), Gaps = 12/303 (3%)
Frame = +2
Query: 236 VNFINKQNTTWTAGHNFYNVDLSYVKKLCGTFLGGPKLPQRAAFAADMIL------PKSF 397
+N N +N T+ G N ++ D+S+ +L +L PQ + L P S
Sbjct: 65 INAHNARNHTFKMGLNQFS-DMSF-DELKRKYLWSE--PQNCSATKSNYLRGTGPYPPSM 120
Query: 398 DAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTXXXX 577
D R++ + +++QGSCGSCW F A+ + I + G++ ++ + ++
Sbjct: 121 DWRKKGN---FVTPVKNQGSCGSCWTFSTTGALESAVAI-ATGKLPF-LAEQQLVDCAQN 175
Query: 578 XXXXXXXXXFPSGAWNFWT-KKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGD 754
PS A+ + KG++ Y PY G
Sbjct: 176 FNNHGCQGGLPSQAFEYIRYNKGIMGEDTY-------PY------------------RGQ 210
Query: 755 TPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAE-IYKNGPVEGAFTVYSDFLQY 931
C +P ++ +D +I+ N++E M E + + PV AF V +DF+ Y
Sbjct: 211 DGDCKY--QPSKAIAFVKDVA------NITLNDEEAMVEAVALHNPVSFAFEVTADFMMY 262
Query: 932 KSGVYQ----HVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDH 1099
+ G+Y H T D + HA+ +G+G E G PYW+V NSW +WG G+F I RG++
Sbjct: 263 RKGIYSSTSCHKTPDKVN-HAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERGKNM 321
Query: 1100 CGI 1108
CG+
Sbjct: 322 CGL 324
>ref|NP_001071303.1| cathepsin Z precursor [Bos taurus].
Length = 304
Score = 85.5 bits (210), Expect = 2e-16
Identities = 65/259 (25%), Positives = 98/259 (37%), Gaps = 6/259 (2%)
Frame = +2
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEI---RDQGS---CGSCWAFGAV 487
T LG P+ + + LPKS+D W N + R+Q CGSCWA G+
Sbjct: 44 TQLGRRTYPRPHEYLSPSDLPKSWD----WRNVNGVNYASVTRNQHIPQYCGSCWAHGST 99
Query: 488 EAISDRICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYD 667
A++DRI I+ G + + + P W + + G+
Sbjct: 100 SAMADRINIKRKGAWPSTLLSVQHVIDCGDAGSCEGGNDLP--VWEYAHRHGIPDET--- 154
Query: 668 SHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISR 847
C Y E C C++ E +Y K Y
Sbjct: 155 ----CNNYQAKDQE---------CDKFNQCGTCTEFKECHVIKNYTLWK---VGDYGSLS 198
Query: 848 NEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYW 1027
+++MAEIY NGP+ Y G+Y H + + GWGV +G YW
Sbjct: 199 GREKMMAEIYTNGPISCGIMATEKMSNYTGGIYSEYNDQAFINHIVSVAGWGVSDGMEYW 258
Query: 1028 LVGNSWNTDWGDNGFFKIL 1084
+V NSW WG++G+ +I+
Sbjct: 259 IVRNSWGEPWGEHGWMRIV 277
>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
Length = 331
Score = 82.0 bits (201), Expect = 2e-15
Identities = 70/260 (26%), Positives = 116/260 (44%), Gaps = 7/260 (2%)
Frame = +2
Query: 350 PQRAAFAAD--MILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSN 523
P+ + +D LP S D RE+ C T E++ QG+CGSCWAF AV A+ ++ +++
Sbjct: 102 PRNVTYKSDPNQKLPDSMDWREK--GCVT--EVKYQGACGSCWAFSAVGALEAQVKLKT- 156
Query: 524 GRVNVEVSAEDMLTXXXXXXXXXXXXX-FPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIP 700
G++ V +SA++++ F + A+ + ++ DS PY
Sbjct: 157 GKL-VSLSAQNLVDCSTAKYGNKGCNGGFMTEAFQY-----IIDNNGIDSEASY-PYKAM 209
Query: 701 P--CEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEI 874
C++ V C+ + P FG +E+ + +
Sbjct: 210 DGKCQYDVKNRAATCSRYIELP-------------------FG--------SEEALKEAV 242
Query: 875 YKNGPVE-GAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNT 1051
GPV G +S F YK+GVY + H + ++G+G +G YWLV NSW
Sbjct: 243 ANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGNLDGKDYWLVKNSWGL 302
Query: 1052 DWGDNGFFKILRGQ-DHCGI 1108
+GD G+ ++ R +HCGI
Sbjct: 303 HFGDQGYIRMARNSGNHCGI 322
>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
Length = 333
Score = 80.1 bits (196), Expect = 7e-15
Identities = 71/251 (28%), Positives = 108/251 (43%), Gaps = 9/251 (3%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
+P S D RE+ P +++QG CGSCWAF A A+ ++ + G++ V +S ++++
Sbjct: 114 IPPSVDWREKGYVTP----VKNQGKCGSCWAFSATGALEGQM-FQKTGKL-VSLSEQNLV 167
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYS--IPPCEHHVNGSRPP 736
F A+ + L GGL DS PY+ + C ++ N S
Sbjct: 168 DCSQPEGNRGCHGGFIDNAFQYV----LDVGGL-DSEESY-PYTGLVGTCLYNPNNSAAN 221
Query: 737 CTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYS 916
TG D PK EK +M + GP+ A ++
Sbjct: 222 ETGFVDLPK----------------------------QEKALMKAVANLGPISVAVDAHN 253
Query: 917 DFLQ-YKSGVYQHVTGDLMG-GHAIRILGWGVENG----TPYWLVGNSWNTDWGDNGFFK 1078
Q YKSG+Y HA+ ++G+G E YWLV NSW WG NG+ K
Sbjct: 254 PSFQFYKSGIYYEPNCSSESVDHAVLVVGYGFEGADSDDNKYWLVKNSWGEHWGMNGYIK 313
Query: 1079 ILRGQ-DHCGI 1108
+ + + +HCGI
Sbjct: 314 MAKDRNNHCGI 324
>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
Length = 334
Score = 79.3 bits (194), Expect = 1e-14
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 7/249 (2%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
+PKS D W + +++QG CGSCWAF A A+ ++ R G++ V +S ++++
Sbjct: 114 VPKSVD----WTKKGYVTPVKNQGQCGSCWAFSATGALEGQM-FRKTGKL-VSLSEQNLV 167
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
A+ + +GGL DS Y + + +P C+
Sbjct: 168 DCSRAQGNQGCNGGLMDNAFQYIKD----NGGL-DSE---ESYPYLATDTNSCNYKPECS 219
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTV-YSD 919
DT G+ I + EK +M + GP+ A ++
Sbjct: 220 AANDT---------GFV--------------DIPQREKALMKAVATVGPISVAIDAGHTS 256
Query: 920 FLQYKSGVYQHVTGDLMG-GHAIRILGWGVE----NGTPYWLVGNSWNTDWGDNGFFKIL 1084
F YKSG+Y H + ++G+G E N +W+V NSW +WG NG+ K+
Sbjct: 257 FQFYKSGIYYDPDCSCKDLDHGVLVVGYGFEGTDSNNNKFWIVKNSWGPEWGWNGYVKMA 316
Query: 1085 RGQ-DHCGI 1108
+ Q +HCGI
Sbjct: 317 KDQNNHCGI 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 86,657,201
Number of extensions: 2581453
Number of successful extensions: 11668
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 11571
Number of HSP's successfully gapped: 15
Length of query: 707
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 598
Effective length of database: 14,074,782
Effective search space: 8416719636
Effective search space used: 8416719636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001336
(2122 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543203.2| PREDICTED: similar to cathepsin B preproprotein... 590 e-168
Alignment gi|XP_535330.2| PREDICTED: similar to P3ECSL [Canis familiaris]. 143 7e-34
Alignment gi|XP_538969.2| PREDICTED: similar to tubulointerstitial nephri... 141 3e-33
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 108 2e-23
Alignment gi|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I pr... 104 4e-22
Alignment gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca... 100 6e-21
Alignment gi|XP_854795.1| PREDICTED: similar to Cathepsin Z precursor (Ca... 84 4e-16
Alignment gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari... 84 5e-16
Alignment gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA... 79 2e-14
Alignment gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar... 77 5e-14
>ref|XP_543203.2| PREDICTED: similar to cathepsin B preproprotein [Canis familiaris].
Length = 420
Score = 590 bits (1520), Expect = e-168
Identities = 268/338 (79%), Positives = 294/338 (86%)
Frame = +2
Query: 143 KMWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLC 322
KMW+ + L F+ LSDELV+++NK+NTTW AGHNF+NVD SY+++LC
Sbjct: 81 KMWQLLTTLSCLVMLTGAQSRLPFRALSDELVDYVNKRNTTWKAGHNFHNVDPSYLRRLC 140
Query: 323 GTFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISD 502
GTFLGGPKLPQR FA ++ILP+SFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISD
Sbjct: 141 GTFLGGPKLPQRVQFAKNLILPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISD 200
Query: 503 RICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGC 682
RICIR+NG VNVEVSAEDMLT FP+ AWNFWTK+GLVSGGLYDSHVGC
Sbjct: 201 RICIRTNGHVNVEVSAEDMLTCCGDQCGDGCNGGFPAEAWNFWTKQGLVSGGLYDSHVGC 260
Query: 683 RPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEI 862
RPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY+PSYKEDKH+GCSSYS+S NEKEI
Sbjct: 261 RPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPSYKEDKHYGCSSYSVSDNEKEI 320
Query: 863 MAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNS 1042
MAEIYKNGPVE AFTVYSDFL YKSGVYQHVTG++MGGHA+RILGWGVE+GTPYWLVGNS
Sbjct: 321 MAEIYKNGPVEAAFTVYSDFLLYKSGVYQHVTGEMMGGHAVRILGWGVEDGTPYWLVGNS 380
Query: 1043 WNTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF*K 1156
WNTDWGDNGFFKILRG+DHCGIESEIVAGIPCT + K
Sbjct: 381 WNTDWGDNGFFKILRGRDHCGIESEIVAGIPCTDQYWK 418
>ref|XP_535330.2| PREDICTED: similar to P3ECSL [Canis familiaris].
Length = 550
Score = 143 bits (360), Expect = 7e-34
Identities = 96/322 (29%), Positives = 146/322 (45%), Gaps = 21/322 (6%)
Frame = +2
Query: 221 LSDELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQ----RAAFAADM 379
+ +++N IN+ N W AG++ F+ + L ++ GT +
Sbjct: 225 VDQDMINAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVTNMNEIHTVLRPGE 284
Query: 380 ILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDM 559
+LP +F+A E+WPN I E DQG+C WAF SDR+ I S G + +S +++
Sbjct: 285 VLPTAFEAAEKWPNL--IHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 342
Query: 560 LTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPC 739
L+ GAW F ++G+VS Y VG P + SR
Sbjct: 343 LSCDTHNQQGCRGGRL-DGAWWFLRRRGVVSDHCYP-FVGREQDEAGPAPRCMMHSRAMG 400
Query: 740 TGEGD-TPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYS 916
G+ T +C + + D + +Y + NEKEIM E+ +NGPV+ V+
Sbjct: 401 RGKRQATARCPS------SHVHANDIYQVTPAYRLGTNEKEIMKELMENGPVQALMEVHE 454
Query: 917 DFLQYKSGVYQHVTGDL--------MGGHAIRILGWGVE-----NGTPYWLVGNSWNTDW 1057
DF Y+ G+Y H L G H+++I GWG E YW NSW W
Sbjct: 455 DFFLYQGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAW 514
Query: 1058 GDNGFFKILRGQDHCGIESEIV 1123
G+ G F+I+RG + C IES ++
Sbjct: 515 GERGHFRIVRGANECDIESFVL 536
>ref|XP_538969.2| PREDICTED: similar to tubulointerstitial nephritis antigen [Canis
familiaris].
Length = 476
Score = 141 bits (355), Expect = 3e-33
Identities = 100/327 (30%), Positives = 147/327 (44%), Gaps = 28/327 (8%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGH--NFYNVDLSY-VKKLCGTFLGGPKL----PQRAAFAADMILP 388
EL+ +NK + WTA + F+ + L K GT P L A+ A LP
Sbjct: 159 ELIEHVNKGDYGWTAQNYSQFWGMTLEEGFKYRLGTLPPSPMLLSMNEMTASLPATTDLP 218
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
+ F A +WP DQ +C + WAF +DRI I+SNGR +S +++++
Sbjct: 219 EFFIASYKWPGWT--HGPLDQKNCAASWAFSTASVAADRIAIQSNGRYTANLSPQNLISC 276
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYD-------SHVGCRPYSIPPCEHHVNGS 727
AW F K+GLVS Y ++ GC S + +
Sbjct: 277 CAKNRHGCNSGSIDR-AWWFLRKRGLVSHACYPLFKDQNATNYGCAMASRSDGRGKRHAT 335
Query: 728 RPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSS-YSISRNEKEIMAEIYKNGPVEGAF 904
+P C E K ++ + CS Y +S NE EIM EI +NGPV+
Sbjct: 336 KP----------CPNNIE-------KSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAIM 378
Query: 905 TVYSDFLQYKSGVYQHVTG--------DLMGGHAIRILGWGVENGT-----PYWLVGNSW 1045
V+ DF YK+G+Y+H+T + HA+++ GWG G +W+ NSW
Sbjct: 379 QVHEDFFHYKTGIYRHITRTNEESRKYQKLQTHAVKLTGWGTLKGAQGQKEKFWIAANSW 438
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVA 1126
WG+NG+F+ILRG + IE I+A
Sbjct: 439 GISWGENGYFRILRGVNESDIEKLIIA 465
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 108 bits (270), Expect = 2e-23
Identities = 85/322 (26%), Positives = 136/322 (42%), Gaps = 20/322 (6%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHNFYNVDLSYVKKLCGTFLGGPKLPQRAAFAADMILPKSFDARE 409
E V IN +WTA L+ + T +GG K+P+ P + + E
Sbjct: 172 EFVKAINTIQKSWTATRYIEYETLTLRDMM--TRVGGRKIPRPKP------TPLTAEIHE 223
Query: 410 QWPNCPT------------IKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAE 553
+ PT + +R+Q SCGSC+AF + + RI I +N +S +
Sbjct: 224 EISRLPTSWDWRNVRGTNFVSPVRNQASCGSCYAFASTAMLEARIRILTNNTQTPILSPQ 283
Query: 554 DMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRP 733
++++ + A + GLV C PY+ GS
Sbjct: 284 EIVSCSQYAQGCEGGFPYLI-AGKYAQDFGLV-------EEACFPYA---------GSDS 326
Query: 734 PCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVY 913
P C+P Y +++ + + NE + E+ ++GP+ AF VY
Sbjct: 327 P-------------CKPNDCFRYYSSEYYYVGGFYGACNEALMKLELVRHGPMAVAFEVY 373
Query: 914 SDFLQYKSGVYQHV------TGDLMGGHAIRILGWGVE--NGTPYWLVGNSWNTDWGDNG 1069
DF Y+ G+Y H + HA+ ++G+G + +G YW+V NSW + WG++G
Sbjct: 374 DDFFHYQKGIYYHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDG 433
Query: 1070 FFKILRGQDHCGIESEIVAGIP 1135
+F+I RG D C IES VA P
Sbjct: 434 YFRIRRGTDECAIESIAVAATP 455
>ref|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I precursor (DPP-I) (DPPI)
(Cathepsin C) (Cathepsin J) (Dipeptidyl transferase),
partial [Canis familiaris].
Length = 481
Score = 104 bits (259), Expect = 4e-22
Identities = 88/315 (27%), Positives = 134/315 (42%), Gaps = 13/315 (4%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHNFYNVDLSY---VKKLCGTFLGGPKLPQRAAFAADMI--LPKS 394
E V IN +WTA L+ +++ G + PK A + I LP S
Sbjct: 194 EFVKAINTIQKSWTATRYIEYETLTLRDMMRRAGGRKIPRPKPTPLTAEIHEEISRLPTS 253
Query: 395 FDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTXXX 574
+D R + +R+Q SCGSC+AF + + RI I +N +S +++++
Sbjct: 254 WDWRNV-RGTNFVSPVRNQASCGSCYAFASTVMLEARIRILTNNTQTPILSPQEIVSCSQ 312
Query: 575 XXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGD 754
+ K GL D C Y+ GS PC
Sbjct: 313 YAQGCEGGFPYLIAG------KYAQDFGLVDE--ACFSYA---------GSDSPCKPND- 354
Query: 755 TPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYK 934
C Y+ Y H+ Y NE + E+ ++GP+ AF VY DF Y+
Sbjct: 355 -------CFHYYSSEY----HYVGGFYGAC-NEALMKLELVRHGPMAVAFEVYDDFFHYQ 402
Query: 935 SGVYQH------VTGDLMGGHAIRILGWGVEN--GTPYWLVGNSWNTDWGDNGFFKILRG 1090
G+Y H + + HA+ ++G+G ++ G YW+V NSW + WG++G+F+I RG
Sbjct: 403 KGIYYHTGLRDPINPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDGYFQICRG 462
Query: 1091 QDHCGIESEIVAGIP 1135
D C IES VA P
Sbjct: 463 TDECAIESIAVAATP 477
>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
Length = 304
Score = 100 bits (249), Expect = 6e-21
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 5/231 (2%)
Frame = +2
Query: 431 IKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFP 610
+ +++QGSCGSCW F A+ I I+S +++ AE L
Sbjct: 97 VSPVKNQGSCGSCWTFSTTGALESAIAIKSGKLLSL---AEQQLVDC------------- 140
Query: 611 SGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY 790
A NF ++ GC+ Y P GE P + + Y
Sbjct: 141 --AQNF-------------NNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDCKY 185
Query: 791 TPSYKEDKHFGCSSYSISRNEKEIMAE-IYKNGPVEGAFTVYSDFLQYKSGVYQ----HV 955
PS + F +I+ N+++ M E + PV AF V SDF+ Y+ G+Y H
Sbjct: 186 QPS--KAIAFVKDVANITINDEQAMVEAVALYNPVSFAFEVTSDFMMYRKGIYSSTSCHK 243
Query: 956 TGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 1108
T D + HA+ +G+G +NG PYW+V NSW WG NG+F + RG++ CG+
Sbjct: 244 TPDKVN-HAVLAVGYGEQNGIPYWIVKNSWGPQWGMNGYFLMERGKNMCGL 293
>ref|XP_854795.1| PREDICTED: similar to Cathepsin Z precursor (Cathepsin X) (Cathepsin
P) [Canis familiaris].
Length = 375
Score = 84.3 bits (207), Expect = 4e-16
Identities = 69/251 (27%), Positives = 104/251 (41%), Gaps = 6/251 (2%)
Frame = +2
Query: 350 PQRAAFAADMILPKSFDAREQWPNCPTIK---EIRDQGS---CGSCWAFGAVEAISDRIC 511
P+ + + LPKS+D W N + R+Q CGSCWA G+ A++DRI
Sbjct: 123 PRPHEYLSPSDLPKSWD----WRNVNGVNYASATRNQHIPQYCGSCWAHGSTSAMADRIN 178
Query: 512 IRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPY 691
I+ G + + + P W++ + G+ C Y
Sbjct: 179 IKRKGAWPSTLLSVQHVLDCANAGSCEGGNDLP--VWSYAHEHGIPDET-------CNNY 229
Query: 692 SIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAE 871
E + CT + +C I YT D +G S+S EK +MAE
Sbjct: 230 QAKDQECNKFNQCGTCT---EFKECHAI--QNYTLWRVGD--YG----SLSGREK-MMAE 277
Query: 872 IYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNT 1051
IY NGP+ + Y G++ H I ++GWGV +GT YW+V NSW
Sbjct: 278 IYANGPISCGIMATEKMVNYTGGIHAEYQEQAYINHVISVVGWGVSDGTEYWIVRNSWGE 337
Query: 1052 DWGDNGFFKIL 1084
WG+ G+ +I+
Sbjct: 338 PWGERGWMRIV 348
>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
Length = 331
Score = 84.0 bits (206), Expect = 5e-16
Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 13/306 (4%)
Frame = +2
Query: 236 VNFINKQNTTWTAGHNFYNVDLSYVKKLCG----TFLGGPKLPQR------AAFAADMIL 385
+ F+ N + G + Y++ ++++ + G + +G ++P + ++ L
Sbjct: 56 LKFVMLHNLEHSMGMHSYDLGMNHLGDMTGEEVISLMGSLRVPSQWQRNVTYRSNSNQKL 115
Query: 386 PKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLT 565
P S D RE+ C T E++ QGSCG+CWAF AV A+ ++ +++ G++ V +SA++++
Sbjct: 116 PDSVDWREK--GCVT--EVKYQGSCGACWAFSAVGALEAQLKLKT-GKL-VSLSAQNLVD 169
Query: 566 XXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTG 745
+G + + ++ DS PY + + + T
Sbjct: 170 CSTEKYGNKGC----NGGFMTTAFQYIIDNNGIDSEASY-PYKAMNGKCRYDSKKRAAT- 223
Query: 746 EGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTV--YSD 919
CSK E FG +E + + GPV A YS
Sbjct: 224 ------CSKYTE----------LPFG--------SEDALKEAVANKGPVSVAIDASHYSF 259
Query: 920 FLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQ-D 1096
FL Y+SGVY + H + ++G+G NG YWLV NSW ++GD G+ ++ R +
Sbjct: 260 FL-YRSGVYYEPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDQGYIRMARNSGN 318
Query: 1097 HCGIES 1114
HCGI S
Sbjct: 319 HCGIAS 324
>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
familiaris].
Length = 442
Score = 78.6 bits (192), Expect = 2e-14
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 3/237 (1%)
Frame = +2
Query: 413 WPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTXXXXXXXXX 592
W + + +++DQG CGSCWAF + + ++ +++ S +++L
Sbjct: 235 WRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKEGTLLSL--SEQELLDCDKVDKACL 292
Query: 593 XXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSK 772
PS A++ + GGL YS +G CS
Sbjct: 293 GG--LPSNAYSAI----MTLGGLETED----DYSY----------------QGHLQACSF 326
Query: 773 ICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGV--- 943
S K+ + + S +S+NE+++ A + K GP+ A + Y+ G+
Sbjct: 327 --------SAKKARVYINDSMELSQNEQKLAAWLAKKGPISVAINAFG-MQFYRHGISHP 377
Query: 944 YQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 1114
+ + + HA+ ++G+G +G P+W + NSW TDWG+ G++ + RG CG+ +
Sbjct: 378 LRPLCSPWLIDHAVLLVGYGNRSGIPFWAIKNSWGTDWGEEGYYYLHRGSGACGVNT 434
>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
Length = 333
Score = 77.4 bits (189), Expect = 5e-14
Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 8/263 (3%)
Frame = +2
Query: 344 KLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSN 523
K+ Q FA +PKS D RE+ P +++QG CGSCWAF A A+ ++ R
Sbjct: 104 KMFQEPLFAE---IPKSVDWREKGYVTP----VKNQGQCGSCWAFSATGALEGQM-FRKT 155
Query: 524 GRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPP 703
G++ V +S ++++ A+ + G + ++G
Sbjct: 156 GKL-VSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLG---RDTET 211
Query: 704 CEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKN 883
C + +P C+ DT G+ + + EK +M +
Sbjct: 212 CNY-----KPECSAANDT---------GFV--------------DLPQREKALMKAVATL 243
Query: 884 GPVEGAFTV-YSDFLQYKSGVY---QHVTGDLMGGHAIRILGWGVE---NGTPYWLVGNS 1042
GP+ A + F YKSG+Y + DL H + ++G+G E + +W+V NS
Sbjct: 244 GPISVAIDAGHQSFQFYKSGIYFDPDCSSKDL--DHGVLVVGYGFEGTDSNNKFWIVKNS 301
Query: 1043 WNTDWGDNGFFKILRGQ-DHCGI 1108
W +WG NG+ K+ + Q +HCGI
Sbjct: 302 WGPEWGWNGYVKMAKDQNNHCGI 324
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 90,023,765
Number of extensions: 2629529
Number of successful extensions: 11717
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 11654
Number of HSP's successfully gapped: 14
Length of query: 707
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 597
Effective length of database: 15,207,544
Effective search space: 9078903768
Effective search space used: 9078903768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001336
(2122 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_680093.1| cathepsin B preproprotein [Homo sapiens]. 566 e-161
Alignment gi|NP_680092.1| cathepsin B preproprotein [Homo sapiens]. 566 e-161
Alignment gi|NP_680091.1| cathepsin B preproprotein [Homo sapiens]. 566 e-161
Alignment gi|NP_680090.1| cathepsin B preproprotein [Homo sapiens]. 566 e-161
Alignment gi|NP_001899.1| cathepsin B preproprotein [Homo sapiens]. 566 e-161
Alignment gi|NP_001191344.1| tubulointerstitial nephritis antigen-like is... 141 3e-33
Alignment gi|NP_071447.1| tubulointerstitial nephritis antigen-like isofo... 141 3e-33
Alignment gi|NP_001191343.1| tubulointerstitial nephritis antigen-like is... 139 1e-32
Alignment gi|NP_055279.3| tubulointerstitial nephritis antigen [Homo sapi... 137 5e-32
Alignment gi|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein ... 109 9e-24
>ref|NP_680093.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 566 bits (1458), Expect = e-161
Identities = 255/335 (76%), Positives = 283/335 (84%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MW+ R F PLSDELVN++NK+NTTW AGHNFYNVD+SY+K+LCG
Sbjct: 1 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
TFLGGPK PQR F D+ LP SFDAREQWP CPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICI +N V+VEVSAED+LT +P+ AWNFWT+KGLVSGGLY+SHVGCR
Sbjct: 121 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY+P+YK+DKH+G +SYS+S +EK+IM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAF+VYSDFL YKSGVYQHVTG++MGGHAIRILGWGVENGTPYWLV NSW
Sbjct: 241 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESE+VAGIP T +
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335
>ref|NP_680092.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 566 bits (1458), Expect = e-161
Identities = 255/335 (76%), Positives = 283/335 (84%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MW+ R F PLSDELVN++NK+NTTW AGHNFYNVD+SY+K+LCG
Sbjct: 1 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
TFLGGPK PQR F D+ LP SFDAREQWP CPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICI +N V+VEVSAED+LT +P+ AWNFWT+KGLVSGGLY+SHVGCR
Sbjct: 121 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY+P+YK+DKH+G +SYS+S +EK+IM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAF+VYSDFL YKSGVYQHVTG++MGGHAIRILGWGVENGTPYWLV NSW
Sbjct: 241 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESE+VAGIP T +
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335
>ref|NP_680091.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 566 bits (1458), Expect = e-161
Identities = 255/335 (76%), Positives = 283/335 (84%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MW+ R F PLSDELVN++NK+NTTW AGHNFYNVD+SY+K+LCG
Sbjct: 1 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
TFLGGPK PQR F D+ LP SFDAREQWP CPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICI +N V+VEVSAED+LT +P+ AWNFWT+KGLVSGGLY+SHVGCR
Sbjct: 121 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY+P+YK+DKH+G +SYS+S +EK+IM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAF+VYSDFL YKSGVYQHVTG++MGGHAIRILGWGVENGTPYWLV NSW
Sbjct: 241 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESE+VAGIP T +
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335
>ref|NP_680090.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 566 bits (1458), Expect = e-161
Identities = 255/335 (76%), Positives = 283/335 (84%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MW+ R F PLSDELVN++NK+NTTW AGHNFYNVD+SY+K+LCG
Sbjct: 1 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
TFLGGPK PQR F D+ LP SFDAREQWP CPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICI +N V+VEVSAED+LT +P+ AWNFWT+KGLVSGGLY+SHVGCR
Sbjct: 121 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY+P+YK+DKH+G +SYS+S +EK+IM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAF+VYSDFL YKSGVYQHVTG++MGGHAIRILGWGVENGTPYWLV NSW
Sbjct: 241 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESE+VAGIP T +
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335
>ref|NP_001899.1| cathepsin B preproprotein [Homo sapiens].
Length = 339
Score = 566 bits (1458), Expect = e-161
Identities = 255/335 (76%), Positives = 283/335 (84%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MW+ R F PLSDELVN++NK+NTTW AGHNFYNVD+SY+K+LCG
Sbjct: 1 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
TFLGGPK PQR F D+ LP SFDAREQWP CPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICI +N V+VEVSAED+LT +P+ AWNFWT+KGLVSGGLY+SHVGCR
Sbjct: 121 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGY+P+YK+DKH+G +SYS+S +EK+IM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAF+VYSDFL YKSGVYQHVTG++MGGHAIRILGWGVENGTPYWLV NSW
Sbjct: 241 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESE+VAGIP T +
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 335
>ref|NP_001191344.1| tubulointerstitial nephritis antigen-like isoform 3 [Homo sapiens].
Length = 362
Score = 141 bits (355), Expect = 3e-33
Identities = 98/321 (30%), Positives = 144/321 (44%), Gaps = 23/321 (7%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQRAAFAADM----ILP 388
+++ IN+ N W AG++ F+ + L ++ GT + + +LP
Sbjct: 40 DMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMHEIYTVLNPGEVLP 99
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
+F+A E+WPN I E DQG+C WAF SDR+ I S G + +S +++L+
Sbjct: 100 TAFEASEKWPNL--IHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC 157
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGE 748
GAW F ++G+VS C P+S E G PPC
Sbjct: 158 DTHQQQGCRGGRL-DGAWWFLRRRGVVSDH-------CYPFS--GRERDEAGPAPPCMMH 207
Query: 749 GDTPKCSKICEPGYTP-SY--KEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSD 919
K + P SY D + Y + N+KEIM E+ +NGPV+ V+ D
Sbjct: 208 SRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHED 267
Query: 920 FLQYKSGVYQHVTGDL--------MGGHAIRILGWGVE-----NGTPYWLVGNSWNTDWG 1060
F YK G+Y H L G H+++I GWG E YW NSW WG
Sbjct: 268 FFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWG 327
Query: 1061 DNGFFKILRGQDHCGIESEIV 1123
+ G F+I+RG + C IES ++
Sbjct: 328 ERGHFRIVRGVNECDIESFVL 348
>ref|NP_071447.1| tubulointerstitial nephritis antigen-like isoform 1 precursor [Homo
sapiens].
Length = 467
Score = 141 bits (355), Expect = 3e-33
Identities = 98/321 (30%), Positives = 144/321 (44%), Gaps = 23/321 (7%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQRAAFAADM----ILP 388
+++ IN+ N W AG++ F+ + L ++ GT + + +LP
Sbjct: 145 DMIKAINQGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSSVMNMHEIYTVLNPGEVLP 204
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
+F+A E+WPN I E DQG+C WAF SDR+ I S G + +S +++L+
Sbjct: 205 TAFEASEKWPNL--IHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC 262
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGE 748
GAW F ++G+VS C P+S E G PPC
Sbjct: 263 DTHQQQGCRGGRL-DGAWWFLRRRGVVSDH-------CYPFS--GRERDEAGPAPPCMMH 312
Query: 749 GDTPKCSKICEPGYTP-SY--KEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSD 919
K + P SY D + Y + N+KEIM E+ +NGPV+ V+ D
Sbjct: 313 SRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHED 372
Query: 920 FLQYKSGVYQHVTGDL--------MGGHAIRILGWGVE-----NGTPYWLVGNSWNTDWG 1060
F YK G+Y H L G H+++I GWG E YW NSW WG
Sbjct: 373 FFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWG 432
Query: 1061 DNGFFKILRGQDHCGIESEIV 1123
+ G F+I+RG + C IES ++
Sbjct: 433 ERGHFRIVRGVNECDIESFVL 453
>ref|NP_001191343.1| tubulointerstitial nephritis antigen-like isoform 2 precursor [Homo
sapiens].
Length = 436
Score = 139 bits (349), Expect = 1e-32
Identities = 88/264 (33%), Positives = 122/264 (46%), Gaps = 16/264 (6%)
Frame = +2
Query: 380 ILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDM 559
+LP +F+A E+WPN I E DQG+C WAF SDR+ I S G + +S +++
Sbjct: 171 VLPTAFEASEKWPNL--IHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNL 228
Query: 560 LTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPC 739
L+ GAW F ++G+VS C P+S E G PPC
Sbjct: 229 LSCDTHQQQGCRGGRL-DGAWWFLRRRGVVSDH-------CYPFS--GRERDEAGPAPPC 278
Query: 740 TGEGDTPKCSKICEPGYTP-SY--KEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTV 910
K + P SY D + Y + N+KEIM E+ +NGPV+ V
Sbjct: 279 MMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEV 338
Query: 911 YSDFLQYKSGVYQHVTGDL--------MGGHAIRILGWGVE-----NGTPYWLVGNSWNT 1051
+ DF YK G+Y H L G H+++I GWG E YW NSW
Sbjct: 339 HEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGP 398
Query: 1052 DWGDNGFFKILRGQDHCGIESEIV 1123
WG+ G F+I+RG + C IES ++
Sbjct: 399 AWGERGHFRIVRGVNECDIESFVL 422
>ref|NP_055279.3| tubulointerstitial nephritis antigen [Homo sapiens].
Length = 476
Score = 137 bits (344), Expect = 5e-32
Identities = 100/331 (30%), Positives = 144/331 (43%), Gaps = 23/331 (6%)
Frame = +2
Query: 203 SLHFQPLSDELVNFINKQNTTWTAGH--NFYNVDLSYVKKL-CGTFLGGPKL----PQRA 361
S H + EL+ +NK + WTA + F+ + L K GT P L A
Sbjct: 150 SQHVCLVRSELIEQVNKGDYGWTAQNYSQFWGMTLEDGFKFRLGTLPPSPMLLSMNEMTA 209
Query: 362 AFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVE 541
+ A LP+ F A +WP DQ +C + WAF +DRI I+S GR
Sbjct: 210 SLPATTDLPEFFVASYKWPGWT--HGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTAN 267
Query: 542 VSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVN 721
+S +++++ AW + K+GLVS Y P N
Sbjct: 268 LSPQNLISCCAKNRHGCNSGSIDR-AWWYLRKRGLVSHACY------------PLFKDQN 314
Query: 722 GSRPPCT--GEGDTPKCSKICEPGYTPSYKEDKHFGCSS-YSISRNEKEIMAEIYKNGPV 892
+ C D +P K ++ + CS Y +S NE EIM EI +NGPV
Sbjct: 315 ATNNGCAMASRSDGRGKRHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPV 374
Query: 893 EGAFTVYSDFLQYKSGVYQHVTGD--------LMGGHAIRILGWGVENGT-----PYWLV 1033
+ V DF YK+G+Y+HVT + HA+++ GWG G +W+
Sbjct: 375 QAIMQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIA 434
Query: 1034 GNSWNTDWGDNGFFKILRGQDHCGIESEIVA 1126
NSW WG+NG+F+ILRG + IE I+A
Sbjct: 435 ANSWGKSWGENGYFRILRGVNESDIEKLIIA 465
>ref|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein [Homo sapiens].
Length = 463
Score = 109 bits (273), Expect = 9e-24
Identities = 81/262 (30%), Positives = 119/262 (45%), Gaps = 11/262 (4%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIK---EIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAE 553
LP S+D W N I +R+Q SCGSC++F ++ + RI I +N +S +
Sbjct: 231 LPTSWD----WRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQ 286
Query: 554 DMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRP 733
++++ + A + GLV C PY+ G+
Sbjct: 287 EVVSCSQYAQGCEGGFPYLI-AGKYAQDFGLV-------EEACFPYT---------GTDS 329
Query: 734 PCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVY 913
PC K + C Y+ Y H+ Y NE + E+ +GP+ AF VY
Sbjct: 330 PC-------KMKEDCFRYYSSEY----HYVGGFYG-GCNEALMKLELVHHGPMAVAFEVY 377
Query: 914 SDFLQYKSGVYQHV------TGDLMGGHAIRILGWGVE--NGTPYWLVGNSWNTDWGDNG 1069
DFL YK G+Y H + HA+ ++G+G + +G YW+V NSW T WG+NG
Sbjct: 378 DDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENG 437
Query: 1070 FFKILRGQDHCGIESEIVAGIP 1135
+F+I RG D C IES VA P
Sbjct: 438 YFRIRRGTDECAIESIAVAATP 459
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 88,336,695
Number of extensions: 2585176
Number of successful extensions: 11774
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 11595
Number of HSP's successfully gapped: 21
Length of query: 707
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 597
Effective length of database: 14,671,124
Effective search space: 8758661028
Effective search space used: 8758661028
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001336
(2122 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031824.1| cathepsin B preproprotein [Mus musculus]. 541 e-154
Alignment gi|NP_036163.3| tubulointerstitial nephritis antigen [Mus muscu... 139 1e-32
Alignment gi|NP_001161805.1| tubulointerstitial nephritis antigen-like pr... 134 2e-31
Alignment gi|NP_075965.2| tubulointerstitial nephritis antigen-like precu... 134 2e-31
Alignment gi|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus muscu... 102 1e-21
Alignment gi|NP_031827.2| pro-cathepsin H preproprotein [Mus musculus]. 94 3e-19
Alignment gi|NP_067256.2| cathepsin S preproprotein [Mus musculus]. 86 1e-16
Alignment gi|NP_081620.2| cathepsin L-like 3 [Mus musculus]. 85 2e-16
Alignment gi|NP_954599.2| hypothetical protein LOC218275 [Mus musculus]. 79 1e-14
Alignment gi|NP_071720.1| cathepsin Z preproprotein [Mus musculus]. 78 2e-14
>ref|NP_031824.1| cathepsin B preproprotein [Mus musculus].
Length = 339
Score = 541 bits (1394), Expect = e-154
Identities = 243/313 (77%), Positives = 271/313 (86%)
Frame = +2
Query: 212 FQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCGTFLGGPKLPQRAAFAADMILPK 391
F PLSD+L+N+INKQNTTW AG NFYNVD+SY+KKLCGT LGGPKLP R AF D+ LP+
Sbjct: 23 FHPLSDDLINYINKQNTTWQAGRNFYNVDISYLKKLCGTVLGGPKLPGRVAFGEDIDLPE 82
Query: 392 SFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTXX 571
+FDAREQW NCPTI +IRDQGSCGSCWAFGAVEAISDR CI +NGRVNVEVSAED+LT
Sbjct: 83 TFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCC 142
Query: 572 XXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEG 751
+PSGAW+FWTKKGLVSGG+Y+SHVGC PY+IPPCEHHVNGSRPPCTGEG
Sbjct: 143 GIQCGDGCNGGYPSGAWSFWTKKGLVSGGVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEG 202
Query: 752 DTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQY 931
DTP+C+K CE GY+PSYKEDKHFG +SYS+S + KEIMAEIYKNGPVEGAFTV+SDFL Y
Sbjct: 203 DTPRCNKSCEAGYSPSYKEDKHFGYTSYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTY 262
Query: 932 KSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIE 1111
KSGVY+H GD+MGGHAIRILGWGVENG PYWL NSWN DWGDNGFFKILRG++HCGIE
Sbjct: 263 KSGVYKHEAGDMMGGHAIRILGWGVENGVPYWLAANSWNLDWGDNGFFKILRGENHCGIE 322
Query: 1112 SEIVAGIPCTPHF 1150
SEIVAGIP T +
Sbjct: 323 SEIVAGIPRTDQY 335
>ref|NP_036163.3| tubulointerstitial nephritis antigen [Mus musculus].
Length = 475
Score = 139 bits (349), Expect = 1e-32
Identities = 100/329 (30%), Positives = 148/329 (44%), Gaps = 21/329 (6%)
Frame = +2
Query: 203 SLHFQPLSDELVNFINKQNTTWTAGH--NFYNVDLSYVKKL-CGTFLGGPKL----PQRA 361
S H + EL++ INK + WTA + F+ + L K GT P L A
Sbjct: 149 SQHVCLVHPELIDHINKGDYGWTAQNYSQFWGMTLEEGFKFRLGTLPPSPMLLSMNEMTA 208
Query: 362 AFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVE 541
+F LP+ F A +WP DQ +C + WAF +DRI I+S GR
Sbjct: 209 SFPPRADLPEIFIASYKWPGWT--HGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTAN 266
Query: 542 VSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVN 721
+S +++++ AW F K+GLVS Y + +++
Sbjct: 267 LSPQNLISCCAKNRHGCNSGSIDR-AWWFLRKRGLVSHACYPL------FKDQNTTNNIC 319
Query: 722 GSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSS-YSISRNEKEIMAEIYKNGPVEG 898
G G +K C + K ++ + CS Y +S NE EIM EI +NGPV+
Sbjct: 320 AMASRSDGRGKR-HATKPCPNSFE---KSNRIYQCSPPYRVSSNETEIMREIIQNGPVQA 375
Query: 899 AFTVYSDFLQYKSGVYQHVTG--------DLMGGHAIRILGWGVENGT-----PYWLVGN 1039
V+ DF YK+G+Y+HV + HA+++ GWG G +W+ N
Sbjct: 376 IMQVHEDFFYYKTGIYRHVVSTNEEPEKYKKLRTHAVKLTGWGTLRGARGKKEKFWIAAN 435
Query: 1040 SWNTDWGDNGFFKILRGQDHCGIESEIVA 1126
SW WG+NG+F+ILRG + IE I+A
Sbjct: 436 SWGKSWGENGYFRILRGVNESDIEKLIIA 464
>ref|NP_001161805.1| tubulointerstitial nephritis antigen-like precursor [Mus musculus].
Length = 466
Score = 134 bits (338), Expect = 2e-31
Identities = 94/318 (29%), Positives = 142/318 (44%), Gaps = 20/318 (6%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQR----AAFAADMILP 388
+++ IN+ N W AG++ F+ + L ++ GT + +LP
Sbjct: 144 DMIKAINRGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSTVMNMNEIYTVLGQGEVLP 203
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
+F+A E+WPN I E DQG+C WAF SDR+ I S G + +S +++L+
Sbjct: 204 TAFEASEKWPNL--IHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSC 261
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGE 748
GAW F ++G+VS Y G P + SR G
Sbjct: 262 DTHHQQGCRGGRL-DGAWWFLRRRGVVSDNCYPFS-GREQNEASPTPRCMMHSR--AMGR 317
Query: 749 GDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQ 928
G S+ C G S D + +Y + +EKEIM E+ +NGPV+ V+ DF
Sbjct: 318 GKRQATSR-CPNGQVDS--NDIYQVTPAYRLGSDEKEIMKELMENGPVQALMEVHEDFFL 374
Query: 929 YKSGVYQHVTGD--------LMGGHAIRILGWGVE-----NGTPYWLVGNSWNTDWGDNG 1069
Y+ G+Y H G H+++I GWG E YW NSW WG+ G
Sbjct: 375 YQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERG 434
Query: 1070 FFKILRGQDHCGIESEIV 1123
F+I+RG + C IE+ ++
Sbjct: 435 HFRIVRGTNECDIETFVL 452
>ref|NP_075965.2| tubulointerstitial nephritis antigen-like precursor [Mus musculus].
Length = 466
Score = 134 bits (338), Expect = 2e-31
Identities = 94/318 (29%), Positives = 142/318 (44%), Gaps = 20/318 (6%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQR----AAFAADMILP 388
+++ IN+ N W AG++ F+ + L ++ GT + +LP
Sbjct: 144 DMIKAINRGNYGWQAGNHSAFWGMTLDEGIRYRLGTIRPSSTVMNMNEIYTVLGQGEVLP 203
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
+F+A E+WPN I E DQG+C WAF SDR+ I S G + +S +++L+
Sbjct: 204 TAFEASEKWPNL--IHEPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSC 261
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGE 748
GAW F ++G+VS Y G P + SR G
Sbjct: 262 DTHHQQGCRGGRL-DGAWWFLRRRGVVSDNCYPFS-GREQNEASPTPRCMMHSR--AMGR 317
Query: 749 GDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQ 928
G S+ C G S D + +Y + +EKEIM E+ +NGPV+ V+ DF
Sbjct: 318 GKRQATSR-CPNGQVDS--NDIYQVTPAYRLGSDEKEIMKELMENGPVQALMEVHEDFFL 374
Query: 929 YKSGVYQHVTGD--------LMGGHAIRILGWGVE-----NGTPYWLVGNSWNTDWGDNG 1069
Y+ G+Y H G H+++I GWG E YW NSW WG+ G
Sbjct: 375 YQRGIYSHTPVSQGRPEQYRRHGTHSVKITGWGEETLPDGRTIKYWTAANSWGPWWGERG 434
Query: 1070 FFKILRGQDHCGIESEIV 1123
F+I+RG + C IE+ ++
Sbjct: 435 HFRIVRGTNECDIETFVL 452
>ref|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus musculus].
Length = 462
Score = 102 bits (254), Expect = 1e-21
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 10/261 (3%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
LP+S+D R + +R+Q SCGSC++F ++ + RI I +N +S ++++
Sbjct: 230 LPESWDWRNV-QGVNYVSPVRNQESCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVV 288
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
+ + + G Y G V S P T
Sbjct: 289 SCSPYAQGCDGGFPY-------------LIAGKYAQDFGV-----------VEESCFPYT 324
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHF--GCSSYSISRNEKEIMAEIYKNGPVEGAFTVYS 916
+ K + C Y+ Y F GC NE + E+ K+GP+ AF V+
Sbjct: 325 AKDSPCKPRENCLRYYSSDYYYVGGFYGGC-------NEALMKLELVKHGPMAVAFEVHD 377
Query: 917 DFLQYKSGVYQHV------TGDLMGGHAIRILGWGVE--NGTPYWLVGNSWNTDWGDNGF 1072
DFL Y SG+Y H + HA+ ++G+G + G YW++ NSW ++WG++G+
Sbjct: 378 DFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRDPVTGIEYWIIKNSWGSNWGESGY 437
Query: 1073 FKILRGQDHCGIESEIVAGIP 1135
F+I RG D C IES VA IP
Sbjct: 438 FRIRRGTDECAIESIAVAAIP 458
>ref|NP_031827.2| pro-cathepsin H preproprotein [Mus musculus].
Length = 333
Score = 94.4 bits (233), Expect = 3e-19
Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 6/247 (2%)
Frame = +2
Query: 386 PKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLT 565
P S D R++ + +++QG+CGSCW F A+ + I S +++ + + ++
Sbjct: 115 PSSMDWRKKGN---VVSPVKNQGACGSCWTFSTTGALESAVAIASGKMLSL--AEQQLVD 169
Query: 566 XXXXXXXXXXXXXFPSGAWNFWT-KKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
PS A+ + KG++ Y PY
Sbjct: 170 CAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSY-------PYI---------------- 206
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAE-IYKNGPVEGAFTVYSD 919
G C + P ++ F + +I+ N++ M E + PV AF V D
Sbjct: 207 --GKDSSCR------FNP--QKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTED 256
Query: 920 FLQYKSGVYQ----HVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR 1087
FL YKSGVY H T D + HA+ +G+G +NG YW+V NSW + WG+NG+F I R
Sbjct: 257 FLMYKSGVYSSKSCHKTPDKVN-HAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIER 315
Query: 1088 GQDHCGI 1108
G++ CG+
Sbjct: 316 GKNMCGL 322
>ref|NP_067256.2| cathepsin S preproprotein [Mus musculus].
Length = 340
Score = 85.9 bits (211), Expect = 1e-16
Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 14/307 (4%)
Frame = +2
Query: 236 VNFINKQNTTWTAGHNFYNV------DLSYVKKLCGTFLGGPKLPQRAAFA------ADM 379
+ FI N ++ G + Y V D++ + LC +G ++P+++ ++
Sbjct: 64 LKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEILCR--MGALRIPRQSPKTVTFRSYSNR 121
Query: 380 ILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDM 559
LP + D RE+ C T E++ QGSCG+CWAF AV A+ ++ +++ G++ + +SA+++
Sbjct: 122 TLPDTVDWREK--GCVT--EVKYQGSCGACWAFSAVGALEGQLKLKT-GKL-ISLSAQNL 175
Query: 560 LTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPC 739
+ G + + ++ G ++ PY + H N
Sbjct: 176 VDCSNEEKYGNKGC---GGGYMTEAFQYIIDNGGIEADASY-PYKATDEKCHYNSKNRAA 231
Query: 740 TGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVE-GAFTVYS 916
T CS+ + FG +E + + GPV G +S
Sbjct: 232 T-------CSRYIQ----------LPFG--------DEDALKEAVATKGPVSVGIDASHS 266
Query: 917 DFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR-GQ 1093
F YKSGVY + H + ++G+G +G YWLV NSW ++GD G+ ++ R +
Sbjct: 267 SFFFYKSGVYDDPSCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARNNK 326
Query: 1094 DHCGIES 1114
+HCGI S
Sbjct: 327 NHCGIAS 333
>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
Length = 331
Score = 85.1 bits (209), Expect = 2e-16
Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 4/249 (1%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
+PKS D W + + ++DQGSCGSCWAF AV ++ ++ R G++ V +S ++++
Sbjct: 115 VPKSVD----WRDHGYVTPVKDQGSCGSCWAFSAVGSLEGQM-FRKTGKL-VPLSVQNLV 168
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
P A+ + +GGL D+ V PY +NG+ C
Sbjct: 169 DCSWSQGNQGCDGGLPDLAFQYVKD----NGGL-DTSVSY-PYEA------LNGT---CR 213
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVE-GAFTVYSD 919
PK S G+ ++ +E +M + GP+ G T +
Sbjct: 214 YN---PKNSAATVTGFV--------------NVQSSEDALMKAVATVGPISVGIDTKHKS 256
Query: 920 FLQYKSGVYQHVT-GDLMGGHAIRILGWGVEN-GTPYWLVGNSWNTDWGDNGFFKILRGQ 1093
F YK G+Y + HA+ ++G+G E+ G YWLV NSW DWG NG+ K+ + +
Sbjct: 257 FQFYKEGMYYEPDCSSTVLDHAVLVVGYGEESDGRKYWLVKNSWGRDWGMNGYIKMAKDR 316
Query: 1094 -DHCGIESE 1117
++CGI S+
Sbjct: 317 NNNCGIASD 325
>ref|NP_954599.2| hypothetical protein LOC218275 [Mus musculus].
Length = 330
Score = 79.0 bits (193), Expect = 1e-14
Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 5/247 (2%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
+PKS D W + + ++DQG CGSCWAF AV ++ +I R G++ V +S ++++
Sbjct: 114 VPKSVD----WRDHGYVTPVKDQGHCGSCWAFSAVGSLEGQI-FRKTGKL-VPLSEQNLM 167
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
+W++ +VGC + +V +R T
Sbjct: 168 DC----------------SWSY-------------GNVGCNGGLMELAFQYVKENRGLDT 198
Query: 743 GEGDTPKC-SKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVE-GAFTVYS 916
E + C Y P Y G +S E +M + GPV G T +
Sbjct: 199 RESYAYEAWDGPCR--YDPKYSAVNITGFVKVPLS--EDALMNAVASVGPVSVGIDTHHH 254
Query: 917 DFLQYKSGVYQHVTGDLMG-GHAIRILGWGVEN-GTPYWLVGNSWNTDWGDNGFFKILRG 1090
F Y+ G Y HA+ ++G+G E+ G YWLV NSW DWG +G+ K+ +
Sbjct: 255 SFRFYRGGTYYEPDCSSTNLDHAVLVVGYGEESDGRKYWLVKNSWGEDWGMDGYIKMAKD 314
Query: 1091 QD-HCGI 1108
+D +CGI
Sbjct: 315 RDNNCGI 321
>ref|NP_071720.1| cathepsin Z preproprotein [Mus musculus].
Length = 306
Score = 78.2 bits (191), Expect = 2e-14
Identities = 65/265 (24%), Positives = 101/265 (38%), Gaps = 14/265 (5%)
Frame = +2
Query: 332 LGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEI---RDQGS---CGSCWAFGAVEA 493
LG P+ + + LPK++D W N + R+Q CGSCWA G+ A
Sbjct: 47 LGRRTYPRPHEYLSPADLPKNWD----WRNVNGVNYASVTRNQHIPQYCGSCWAHGSTSA 102
Query: 494 ISDRICIRSNGR-VNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDS 670
++DRI I+ G ++ +S ++++ W + K G+
Sbjct: 103 MADRINIKRKGAWPSILLSVQNVIDCGNAGSCEGGNDL---PVWEYAHKHGIPDET---- 155
Query: 671 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKH------FGCSS 832
C Y + C K + G +KE +
Sbjct: 156 ---CNNY------------------QAKDQDCDKFNQCGTCTEFKECHTIQNYTLWRVGD 194
Query: 833 YSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVEN 1012
Y +++MAEIY NGP+ Y G+Y + H I + GWGV N
Sbjct: 195 YGSLSGREKMMAEIYANGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSN 254
Query: 1013 -GTPYWLVGNSWNTDWGDNGFFKIL 1084
G YW+V NSW WG+ G+ +I+
Sbjct: 255 DGIEYWIVRNSWGEPWGEKGWMRIV 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 74,491,279
Number of extensions: 2145609
Number of successful extensions: 9467
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 9306
Number of HSP's successfully gapped: 28
Length of query: 707
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 599
Effective length of database: 12,373,671
Effective search space: 7411828929
Effective search space used: 7411828929
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001336
(2122 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090927.1| cathepsin B precursor [Sus scrofa]. 661 0.0
Alignment gi|XP_003127800.2| PREDICTED: tubulointerstitial nephritis anti... 140 3e-33
Alignment gi|XP_001927698.3| PREDICTED: tubulointerstitial nephritis anti... 133 3e-31
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 108 2e-23
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 99 9e-21
Alignment gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa]. 84 3e-16
Alignment gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa]. 84 3e-16
Alignment gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa]. 84 4e-16
Alignment gi|NP_001116576.1| cathepsin Z [Sus scrofa]. 82 9e-16
Alignment gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa]. 78 2e-14
>ref|NP_001090927.1| cathepsin B precursor [Sus scrofa].
Length = 335
Score = 661 bits (1706), Expect = 0.0
Identities = 308/335 (91%), Positives = 308/335 (91%)
Frame = +2
Query: 146 MWRXXXXXXXXXXXXXXRESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 325
MWR RESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG
Sbjct: 1 MWRLLATLSCLVLLTSARESLHFQPLSDELVNFINKQNTTWTAGHNFYNVDLSYVKKLCG 60
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 505
TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR
Sbjct: 61 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDR 120
Query: 506 ICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCR 685
ICIRSNGRVNVEVSAEDMLT FPSGAWNFWTKKGLVSGGLYDSHVGCR
Sbjct: 121 ICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYDSHVGCR 180
Query: 686 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 865
PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM
Sbjct: 181 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIM 240
Query: 866 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 1045
AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW
Sbjct: 241 AEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSW 300
Query: 1046 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 1150
NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF
Sbjct: 301 NTDWGDNGFFKILRGQDHCGIESEIVAGIPCTPHF 335
>ref|XP_003127800.2| PREDICTED: tubulointerstitial nephritis antigen [Sus scrofa].
Length = 362
Score = 140 bits (353), Expect = 3e-33
Identities = 93/320 (29%), Positives = 143/320 (44%), Gaps = 22/320 (6%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGHN--FYNVDLSY-VKKLCGTFLGGPKLPQ----RAAFAADMILP 388
+++ IN+ N W AG++ F+ + L ++ GT + +LP
Sbjct: 40 DMIKAINQGNYGWRAGNHSAFWGMTLDEGIRYRLGTIRPSSSVANMNEIHTVLGPGEVLP 99
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
++F+A E+WPN I + DQG+C WAF SDR+ I S G + +S +++L+
Sbjct: 100 RAFEASEKWPNL--IHDPLDQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC 157
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLY--DSHVGCRPYSIPPCEHHVNGSRPPCT 742
GAW F ++G+VS Y H P C H
Sbjct: 158 DTHNQQGCQGGRL-DGAWWFLRRRGVVSDHCYPFSGHERNEAGPAPRCMMHSRAM----- 211
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDF 922
G G ++ C Y + D + +Y + NEK+IM E+ +NGPV+ V+ DF
Sbjct: 212 GRGKRQATAR-CPNSYV--HANDIYQVTPAYRLGSNEKDIMKELMENGPVQALMEVHEDF 268
Query: 923 LQYKSGVYQHVTGD--------LMGGHAIRILGWGVE-----NGTPYWLVGNSWNTDWGD 1063
Y+SG+Y H G H+++I GWG E YW NSW WG+
Sbjct: 269 FLYQSGIYSHTPVSHGRPERYRRHGTHSVKITGWGEETLPDGRMLKYWTAANSWGPGWGE 328
Query: 1064 NGFFKILRGQDHCGIESEIV 1123
G F+I+RG + C IES ++
Sbjct: 329 RGHFRIVRGANECDIESFVL 348
>ref|XP_001927698.3| PREDICTED: tubulointerstitial nephritis antigen [Sus scrofa].
Length = 476
Score = 133 bits (335), Expect = 3e-31
Identities = 99/335 (29%), Positives = 146/335 (43%), Gaps = 27/335 (8%)
Frame = +2
Query: 203 SLHFQPLSDELVNFINKQNTTWTAGH--NFYNVDLSY-VKKLCGTFLGGPKLPQRAAFAA 373
S H + L+ +N+ + WTA + F+ + L K GT P L A
Sbjct: 150 SQHVCLVQPGLIEHVNEGDFGWTAQNYSQFWGMTLEEGFKYRLGTLPPSPLLLSMNEVTA 209
Query: 374 DMI----LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVE 541
+ LP+ F A +WP DQ +C + WAF +DRI I+S GR
Sbjct: 210 SLPETTDLPEFFVASYKWPGWT--HGPLDQKNCAASWAFSTASVAADRIAIQSEGRYTAN 267
Query: 542 VSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVN 721
+S +++++ AW + K+GLVS Y P N
Sbjct: 268 LSPQNLISCCAKNRHGCNSGSIDR-AWWYLRKRGLVSHACY------------PLFKDQN 314
Query: 722 GSRPPCT------GEGDTPKCSKICEPGYTPSYKEDKHFGCSS-YSISRNEKEIMAEIYK 880
+ C G G +K C + K ++ + CS Y +S NE EIM EI +
Sbjct: 315 ATNNGCAMASRSDGRGKR-HATKPCPNNFE---KSNRIYQCSPPYRVSSNETEIMREIMQ 370
Query: 881 NGPVEGAFTVYSDFLQYKSGVYQHVTGD--------LMGGHAIRILGWGVENGT-----P 1021
NGPV+ V+ DF YK+G+Y+HVT + HA+++ GWG G
Sbjct: 371 NGPVQAIMQVHEDFFHYKTGIYRHVTSTNEESDKYRKLRTHAVKLTGWGTLKGAQGRKEK 430
Query: 1022 YWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVA 1126
+W+ NSW WG+NG+F+ILRG + IE I+A
Sbjct: 431 FWIAANSWGKSWGENGYFRILRGVNESDIEKLIIA 465
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 108 bits (269), Expect = 2e-23
Identities = 87/317 (27%), Positives = 138/317 (43%), Gaps = 15/317 (4%)
Frame = +2
Query: 230 ELVNFINKQNTTWTAGH--NFYNVDLSYVKKLCGTFLGGPKLPQRAAFAAD-----MILP 388
+ V IN +WTA + + L + + G + P+ A A+ + LP
Sbjct: 173 DFVKAINGIQKSWTATAYMEYETLTLKEMTQRGGGYNQRLPRPKPAPITAEIQEKSLHLP 232
Query: 389 KSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTX 568
S+D R + +R+Q SCGSC++F ++ + RI I +N +S +++++
Sbjct: 233 ASWDWRNV-RGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSC 291
Query: 569 XXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGE 748
+ A + GLV C PY+ G+ PCT
Sbjct: 292 SQYAQGCAGGFPYLI-AGKYAQDFGLVEEA-------CFPYT---------GTDSPCT-- 332
Query: 749 GDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTVYSDFLQ 928
+ G Y + H+ Y NE + E+ +GP+ AF VY DFL
Sbjct: 333 ---------VKEGCFRYYSSEYHYVGGFYG-GCNEALMKLELVHHGPMAVAFEVYDDFLH 382
Query: 929 YKSGVYQHV------TGDLMGGHAIRILGWGVE--NGTPYWLVGNSWNTDWGDNGFFKIL 1084
Y+ G+Y H + HA+ ++G+G + +G YW+V NSW T WG++G+F+I
Sbjct: 383 YRKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDLASGMDYWIVKNSWGTSWGEDGYFRIR 442
Query: 1085 RGQDHCGIESEIVAGIP 1135
RG D C IES VA P
Sbjct: 443 RGTDECAIESIAVAATP 459
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 99.0 bits (245), Expect = 9e-21
Identities = 67/232 (28%), Positives = 108/232 (46%), Gaps = 6/232 (2%)
Frame = +2
Query: 431 IKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFP 610
+ +++QGSCGSCW F A+ + I + G++ + ++ + ++ P
Sbjct: 129 VSPVKNQGSCGSCWTFSTTGALESAVAI-ATGKM-LSLAEQQLVDCAQNFNNHGCQGGLP 186
Query: 611 SGAWNFWT-KKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPG 787
S A+ + KG++ Y P G+ D K +P
Sbjct: 187 SQAFEYIRYNKGIMGEDTY-----------------------PYKGQDDHCKF----QPD 219
Query: 788 YTPSYKEDKHFGCSSYSISRNEKEIMAE-IYKNGPVEGAFTVYSDFLQYKSGVYQ----H 952
++ +D +I+ N++E M E + PV AF V +DFL Y+ G+Y H
Sbjct: 220 KAIAFVKDVA------NITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCH 273
Query: 953 VTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 1108
T D + HA+ +G+G ENG PYW+V NSW WG NG+F I RG++ CG+
Sbjct: 274 KTPDKVN-HAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 324
>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
Length = 331
Score = 84.0 bits (206), Expect = 3e-16
Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 4/246 (1%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
LP S D RE+ C T E++ QGSCGSCWAF AV A+ ++ +++ GR+ V +SA++++
Sbjct: 115 LPDSMDWREK--GCVT--EVKYQGSCGSCWAFSAVGALEAQVKMKT-GRL-VSLSAQNLV 168
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
+ KG G + ++ Y I S P
Sbjct: 169 DCSTEK----------------YRNKGCNGGFMTEAF----QYIIDNNGIDSEASYPYKA 208
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSIS--RNEKEIMAEIYKNGPVEGAFTV-Y 913
+G SK ++ CS Y+ +E + + GPV A +
Sbjct: 209 VDGKCKYDSK------------NRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKH 256
Query: 914 SDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR-G 1090
S F Y+SGVY + H + ++G+G NG YWLV NSW ++GD G+ ++ R
Sbjct: 257 SSFFFYRSGVYYDPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDGGYIRMARNS 316
Query: 1091 QDHCGI 1108
++HCGI
Sbjct: 317 ENHCGI 322
>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
Length = 331
Score = 84.0 bits (206), Expect = 3e-16
Identities = 72/246 (29%), Positives = 112/246 (45%), Gaps = 4/246 (1%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
LP S D RE+ C T E++ QGSCGSCWAF AV A+ ++ +++ GR+ V +SA++++
Sbjct: 115 LPDSMDWREK--GCVT--EVKYQGSCGSCWAFSAVGALEAQVKMKT-GRL-VSLSAQNLV 168
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
+ KG G + ++ Y I S P
Sbjct: 169 DCSTEK----------------YRNKGCNGGFMTEAF----QYIIDNNGIDSEASYPYKA 208
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSIS--RNEKEIMAEIYKNGPVEGAFTV-Y 913
+G SK ++ CS Y+ +E + + GPV A +
Sbjct: 209 VDGKCKYDSK------------NRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKH 256
Query: 914 SDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR-G 1090
S F Y+SGVY + H + ++G+G NG YWLV NSW ++GD G+ ++ R
Sbjct: 257 SSFFFYRSGVYYDPSCTQNVNHGVLVVGYGNLNGKDYWLVKNSWGLNFGDGGYIRMARNS 316
Query: 1091 QDHCGI 1108
++HCGI
Sbjct: 317 ENHCGI 322
>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
Length = 334
Score = 83.6 bits (205), Expect = 4e-16
Identities = 70/253 (27%), Positives = 113/253 (44%), Gaps = 9/253 (3%)
Frame = +2
Query: 383 LPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDML 562
+PKS D RE+ + +++QG CGSCWAF A A+ ++ R G++ V +S ++++
Sbjct: 114 VPKSVDWREKG----YVTAVKNQGQCGSCWAFSATGALEGQM-FRKTGKL-VSLSEQNLV 167
Query: 563 TXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIPPCEHHVNGSRPPCT 742
A+ + +GGL S P N CT
Sbjct: 168 DCSRPQGNQGCNGGLMDNAFQYVKD----NGGLDTEE------SYPYLGRETNS----CT 213
Query: 743 GEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYKNGPVEGAFTV-YSD 919
+ P+CS + G+ I + EK +M + GP+ A +S
Sbjct: 214 YK---PECSAANDTGFV--------------DIPQREKALMKAVATVGPISVAIDAGHSS 256
Query: 920 FLQYKSGVYQHV---TGDLMGGHAIRILGWGVE----NGTPYWLVGNSWNTDWGDNGFFK 1078
F YKSG+Y + DL H + ++G+G E N + +W+V NSW +WG NG+ K
Sbjct: 257 FQFYKSGIYYDPDCSSKDL--DHGVLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVK 314
Query: 1079 ILRGQ-DHCGIES 1114
+ + Q +HCGI +
Sbjct: 315 MAKDQNNHCGIST 327
>ref|NP_001116576.1| cathepsin Z [Sus scrofa].
Length = 304
Score = 82.4 bits (202), Expect = 9e-16
Identities = 64/259 (24%), Positives = 96/259 (37%), Gaps = 6/259 (2%)
Frame = +2
Query: 326 TFLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEI---RDQGS---CGSCWAFGAV 487
T LG P+ + + LP+S+D W N + R+Q CGSCWA G+
Sbjct: 44 TQLGHRTYPRPHEYLSPSDLPRSWD----WRNVNGVNYASVTRNQHIPQYCGSCWAHGST 99
Query: 488 EAISDRICIRSNGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYD 667
A++DRI I+ G + + + P W + + G+
Sbjct: 100 SAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLP--VWAYAHRHGIPDET--- 154
Query: 668 SHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISR 847
C Y C C++ E +Y K Y
Sbjct: 155 ----CNNYQ---------AKDQVCDKFNQCGTCTEFKECHVIQNYTLWK---VGDYGSVS 198
Query: 848 NEKEIMAEIYKNGPVEGAFTVYSDFLQYKSGVYQHVTGDLMGGHAIRILGWGVENGTPYW 1027
+++MAEIY NGP+ Y G+Y H + + GWGV GT YW
Sbjct: 199 GREKMMAEIYANGPISCGIMATEKMSNYTGGIYAEYKDQAYINHIVSVAGWGVSGGTEYW 258
Query: 1028 LVGNSWNTDWGDNGFFKIL 1084
+V NSW WG+ G+ +I+
Sbjct: 259 IVRNSWGEPWGERGWMRIV 277
>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
Length = 490
Score = 78.2 bits (191), Expect = 2e-14
Identities = 60/259 (23%), Positives = 109/259 (42%), Gaps = 3/259 (1%)
Frame = +2
Query: 341 PKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRS 520
P R A + + P +D W + +++DQG CGSCWAF + + ++
Sbjct: 263 PGRKMRLAKSVSSLPPPEWD----WRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQ 318
Query: 521 NGRVNVEVSAEDMLTXXXXXXXXXXXXXFPSGAWNFWTKKGLVSGGLYDSHVGCRPYSIP 700
+++ S +++L PS A++ K L GGL
Sbjct: 319 GTLLSL--SEQELLDCDKVDKGCMGG--LPSNAYS--AIKTL--GGLETEE--------- 361
Query: 701 PCEHHVNGSRPPCTGEGDTPKCSKICEPGYTPSYKEDKHFGCSSYSISRNEKEIMAEIYK 880
++ G C+ + K Y D S +S+NE+++ A + +
Sbjct: 362 --DYSYRGHLQTCSFNAEKAKV-----------YIND------SVELSQNEQKLAAWLAE 402
Query: 881 NGPVEGAFTVYSDFLQYKSGV---YQHVTGDLMGGHAIRILGWGVENGTPYWLVGNSWNT 1051
GP+ A + Y+ G+ + + + HA+ ++G+G + TP+W + NSW T
Sbjct: 403 KGPISVAINAFG-MQFYRHGISHPLRPLCSPWLIDHAVLLVGYGNRSATPFWAIKNSWGT 461
Query: 1052 DWGDNGFFKILRGQDHCGI 1108
DWG+ G++ + RG CG+
Sbjct: 462 DWGEEGYYYLYRGSGACGV 480
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 56,035,554
Number of extensions: 1678381
Number of successful extensions: 7563
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 7525
Number of HSP's successfully gapped: 15
Length of query: 707
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 601
Effective length of database: 8,704,850
Effective search space: 5231614850
Effective search space used: 5231614850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001336
(2122 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 2006 0.0
Sscrofa_Chr01 80 6e-12
>Sscrofa_Chr14
|| Length = 153851969
Score = 2006 bits (1012), Expect = 0.0
Identities = 1028/1032 (99%), Gaps = 1/1032 (0%)
Strand = Plus / Minus
Query: 1067 ggcttctttaagatcctcagaggacaggatcactgtggcatcgagtcagagatcgtggct 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203879 ggcttctttaagatcctcagaggacaggatcactgtggcatcgagtcagagatcgtggct 16203820
Query: 1127 ggaatcccatgtactccccatttctagaagtgctgatctgtttggccgcccctggggcag 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203819 ggaatcccatgtactccccatttctagaagtgctgatctgtttggccgcccctggggcag 16203760
Query: 1187 tttttcccgcagtatagcccttgggattgggggtgtgatggggggataggaaatgtcttt 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203759 tttttcccgcagtatagcccttgggattgggggtgtgatggggggataggaaatgtcttt 16203700
Query: 1247 tattctttgagttcagataagatgcaggagtttttagacaggcctcaaggactgggtcgg 1306
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16203699 tattctttgagttcagataagatgcaggcgtttttagacaggcctcaaggactgggtcgg 16203640
Query: 1307 gccaagcctcgtgtctgccatcagcactgtcttccaaggagacacagctaaggcctgatc 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203639 gccaagcctcgtgtctgccatcagcactgtcttccaaggagacacagctaaggcctgatc 16203580
Query: 1367 agggaatggaccgctgtcacatcacaaacaccacagaagccaccgcttccgccgccaccc 1426
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 16203579 agggaatggaccgctgtcacatcacaaacaccacagaagccgccgcttccgccgccaccc 16203520
Query: 1427 ggagaacgcacccctcctcagactagctgtgtcctgcccggtcccactcacttctgccac 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203519 ggagaacgcacccctcctcagactagctgtgtcctgcccggtcccactcacttctgccac 16203460
Query: 1487 gcaccctcccacactcccagccgcatcgcctaggagcagaacagagaccccagcattcgt 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203459 gcaccctcccacactcccagccgcatcgcctaggagcagaacagagaccccagcattcgt 16203400
Query: 1547 aggtttcccaggactggaaggcagagctcctacctggacagaggcccttctgagcaggca 1606
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 16203399 aggtttcccaggactggaaggccgagctcctacctggacagaggcccttctgagcaggca 16203340
Query: 1607 gctgctagacctggaggaggttgaggaggtctggggtggccctggggagaaagccacagt 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203339 gctgctagacctggaggaggttgaggaggtctggggtggccctggggagaaagccacagt 16203280
Query: 1667 ctgcctgggccccgcatctgtcgagctttgcggagtggtttaccccatctggtcttgtcc 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203279 ctgcctgggccccgcatctgtcgagctttgcggagtggtttaccccatctggtcttgtcc 16203220
Query: 1727 ttggtgtgattccttctcaaattctaagtctttatcacatgagcacgtcgggtggtggga 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203219 ttggtgtgattccttctcaaattctaagtctttatcacatgagcacgtcgggtggtggga 16203160
Query: 1787 agggctgtgctggttctacaggtcatctccttaaagcaatgaaattagtttgcagagaaa 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203159 agggctgtgctggttctacaggtcatctccttaaagcaatgaaattagtttgcagagaaa 16203100
Query: 1847 ccagtttttactgtttaaaaccactgcttcaccctgtcagtgtaacaaggatgactgccg 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203099 ccagtttttactgtttaaaaccactgcttcaccctgtcagtgtaacaaggatgactgccg 16203040
Query: 1907 ataaaatgcctctccttcaatgtgacatctgcgttctggtgcatctggaagatggtttgt 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16203039 ataaaatgcctctccttcaatgtgacatctgcgttctggtgcatctggaagatggtttgt 16202980
Query: 1967 tgctgtctctagactcgtagctgctgtctctccttagcccccagaagaatcatgttccca 2026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16202979 tgctgtctctagactcgtagctgctgtctctccttagcccccagaagaatcatgttccca 16202920
Query: 2027 cgggcccttgaaacgctatccagggatgtcttgcttcagttgagtggaacaaagtaaaat 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 16202919 cgggcccttgaaacgctatccagggatgtcttgcttcagttgagtggaacaaagt-aaat 16202861
Query: 2087 acttaattttaa 2098
||||||||||||
Sbjct: 16202860 acttaattttaa 16202849
Score = 305 bits (154), Expect = 5e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 119 ggtgaatctaggatccacctgccaaaaatgtggcggctcttggccaccctcagctgcctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16212199 ggtgaatctaggatccacctgccaaaaatgtggcggctcttggccaccctcagctgcctg 16212140
Query: 179 gtgctgctgaccagtgcccgggagagtctgcatttccagcctctgtcggatgagctggtc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16212139 gtgctgctgaccagtgcccgggagagtctgcatttccagcctctgtcggatgagctggtc 16212080
Query: 239 aattttattaacaagcaaaacactacgtggacgg 272
||||||||||||||||||||||||||||||||||
Sbjct: 16212079 aattttattaacaagcaaaacactacgtggacgg 16212046
Score = 281 bits (142), Expect = 8e-73
Identities = 145/146 (99%)
Strand = Plus / Minus
Query: 677 ggttgcaggccctactccatcccaccttgcgaacaccacgtgaacggctcccggcccccg 736
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 16207492 ggttgcaggccctactccatcccaccttgtgaacaccacgtgaacggctcccggcccccg 16207433
Query: 737 tgcactggggagggggacacccccaagtgcagcaagatctgcgagcctggctacaccccg 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16207432 tgcactggggagggggacacccccaagtgcagcaagatctgcgagcctggctacaccccg 16207373
Query: 797 tcctacaaagaagacaagcacttcgg 822
||||||||||||||||||||||||||
Sbjct: 16207372 tcctacaaagaagacaagcacttcgg 16207347
Score = 260 bits (131), Expect = 3e-66
Identities = 131/131 (100%)
Strand = Plus / Minus
Query: 938 ggagtgtaccagcacgtcacaggagacttgatgggaggccatgccatccgcatcctgggc 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16204417 ggagtgtaccagcacgtcacaggagacttgatgggaggccatgccatccgcatcctgggc 16204358
Query: 998 tggggagtggagaatggcaccccctactggctggtcggcaactcctggaacacagactgg 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16204357 tggggagtggagaatggcaccccctactggctggtcggcaactcctggaacacagactgg 16204298
Query: 1058 ggtgacaatgg 1068
|||||||||||
Sbjct: 16204297 ggtgacaatgg 16204287
Score = 234 bits (118), Expect = 2e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 356 agagctgcttttgctgcggacatgatcctgcccaaaagcttcgatgcccgggaacagtgg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16210409 agagctgcttttgctgcggacatgatcctgcccaaaagcttcgatgcccgggaacagtgg 16210350
Query: 416 cccaactgcccgaccatcaaagagatcagagaccagggctcctgtggctcctgctggg 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16210349 cccaactgcccgaccatcaaagagatcagagaccagggctcctgtggctcctgctggg 16210292
Score = 230 bits (116), Expect = 3e-57
Identities = 122/124 (98%)
Strand = Plus / Minus
Query: 821 ggatgcagctcctacagcatctctaggaacgagaaggagatcatggcggagatctacaaa 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16206177 ggatgcagctcctacagcatctctaggaacgagaaggagatcatggcggagatctacaaa 16206118
Query: 881 aacggcccggtcgagggggccttcactgtgtactcggacttcctgcagtataagtctgga 940
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16206117 aatggcccggtcgagggggccttcactgtgtactcggacttcctgcagtataagtctggt 16206058
Query: 941 gtgt 944
||||
Sbjct: 16206057 gtgt 16206054
Score = 230 bits (116), Expect = 3e-57
Identities = 119/120 (99%)
Strand = Plus / Minus
Query: 472 ggcgtttggggctgtggaagccatctctgaccggatctgcatccgcagcaacgggcgtgt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16209010 ggcgtttggggctgtggaagccatctctgaccggatctgcatccgcagcaacgggcgtgt 16208951
Query: 532 caatgtggaggtgtccgctgaggacatgctcacctgttgtggcgacgagtgtggggatgg 591
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16208950 caacgtggaggtgtccgctgaggacatgctcacctgttgtggcgacgagtgtggggatgg 16208891
Score = 216 bits (109), Expect = 4e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 5 acttagcgcgggggcggctctgggaagctaaggcggctggctgttcgggcgtcagaacct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16223504 acttagcgcgggggcggctctgggaagctaaggcggctggctgttcgggcgtcagaacct 16223445
Query: 65 gcccgagcgctcggaggctgcagacctaggccctcggcggcggcggcgg 113
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16223444 gcccgagcgctcggaggctgcagacctaggccctcggcggcggcggcgg 16223396
Score = 176 bits (89), Expect = 3e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 591 gctgtaacggtggctttccctctggagcctggaacttctggacaaagaagggcctggtgt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16207843 gctgtaacggtggctttccctctggagcctggaacttctggacaaagaagggcctggtgt 16207784
Query: 651 ccgggggcctctatgactcgcatgtgggt 679
|||||||||||||||||||||||||||||
Sbjct: 16207783 ccgggggcctctatgactcgcatgtgggt 16207755
Score = 172 bits (87), Expect = 5e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 271 ggccggacacaatttctacaatgtggacctgagctacgtgaagaagctctgtggcacctt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16211143 ggccggacacaatttctacaatgtggacctgagctacgtgaagaagctctgtggcacctt 16211084
Query: 331 cctgggtggacccaagctgccccagag 357
|||||||||||||||||||||||||||
Sbjct: 16211083 cctgggtggacccaagctgccccagag 16211057
>Sscrofa_Chr01
|| Length = 315321322
Score = 79.8 bits (40), Expect = 6e-12
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 1826 tgaaattagtttgcagagaaaccagtttttactgtttaaaaccactgcttcaccctgtca 1885
||||| ||||||| ||||||||||| ||||||| ||||||| |||||||||||||||| |
Sbjct: 157764518 tgaaaatagtttggagagaaaccagcttttactatttaaaatcactgcttcaccctgt-a 157764460
Query: 1886 gtgtaacaagga 1897
|| |||||||||
Sbjct: 157764459 gtataacaagga 157764448
Score = 75.8 bits (38), Expect = 9e-11
Identities = 96/114 (84%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 1910 aaatgcctctccttcaatgtgacatctgcgttctggtg-catctggaagatggtttgttg 1968
||||||||||||| |||||||| ||||| |||||||| ||||| ||| || | |||
Sbjct: 261488332 aaatgcctctcctccaatgtgaagtctgcattctggtgacatcttgaaaatcatctgtca 261488391
Query: 1969 ctgtctctagactcgtagctgctgtctctccttagcccccagaagaatcatgtt 2022
||||||||||||| |||| |||||| |||||||| |||||||| |||| |||||
Sbjct: 261488392 ctgtctctagacttgtagttgctgtgtctccttatcccccagaggaatgatgtt 261488445
Score = 75.8 bits (38), Expect = 9e-11
Identities = 96/114 (84%), Gaps = 1/114 (0%)
Strand = Plus / Plus
Query: 1910 aaatgcctctccttcaatgtgacatctgcgttctggtg-catctggaagatggtttgttg 1968
||||||||||||| |||||||| ||||| |||||||| ||||| ||| || | |||
Sbjct: 261640149 aaatgcctctcctccaatgtgaagtctgcattctggtgacatcttgaaaatcatctgtca 261640208
Query: 1969 ctgtctctagactcgtagctgctgtctctccttagcccccagaagaatcatgtt 2022
||||||||||||| |||| |||||| |||||||| |||||||| |||| |||||
Sbjct: 261640209 ctgtctctagacttgtagttgctgtgtctccttatcccccagaggaatgatgtt 261640262
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,724,148
Number of extensions: 439
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 13
Length of query: 2122
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2100
Effective length of database: 2,808,408,574
Effective search space: 5897658005400
Effective search space used: 5897658005400
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)