Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001340
(680 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014862.1| 60S ribosomal protein L29 [Bos taurus]. 235 2e-62
>ref|NP_001014862.1| 60S ribosomal protein L29 [Bos taurus].
Length = 152
Score = 235 bits (600), Expect = 2e-62
Identities = 114/120 (95%), Positives = 117/120 (97%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKAMSARAEA+KALVKPKE+KP +P GGSRKLSRLAYIAHPKLGKRARARIAKGLR CR
Sbjct: 61 NAKAMSARAEAVKALVKPKEIKPKMPTGGSRKLSRLAYIAHPKLGKRARARIAKGLRLCR 120
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,280,585
Number of extensions: 627110
Number of successful extensions: 2070
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2066
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 127
Effective length of database: 14,405,662
Effective search space: 1829519074
Effective search space used: 1829519074
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001340
(680 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533805.2| PREDICTED: similar to 60S ribosomal protein L29... 239 1e-63
Alignment gi|XP_536523.2| PREDICTED: similar to 60S ribosomal protein L29... 229 5e-62
Alignment gi|XP_533530.2| PREDICTED: similar to 60S ribosomal protein L29... 228 3e-60
Alignment gi|XP_533388.2| PREDICTED: similar to 60S ribosomal protein L29... 222 2e-58
Alignment gi|XP_854138.1| PREDICTED: similar to 60S ribosomal protein L29... 218 3e-57
Alignment gi|XP_533422.2| PREDICTED: similar to 60S ribosomal protein L29... 217 9e-57
Alignment gi|XP_536681.1| PREDICTED: similar to 60S ribosomal protein L29... 214 7e-56
Alignment gi|XP_548909.2| PREDICTED: similar to 60S ribosomal protein L29... 210 1e-54
Alignment gi|XP_854583.1| PREDICTED: similar to 60S ribosomal protein L29... 203 1e-52
Alignment gi|XP_855223.1| PREDICTED: similar to 60S ribosomal protein L29... 179 2e-45
>ref|XP_533805.2| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 470
Score = 239 bits (611), Expect = 1e-63
Identities = 117/121 (96%), Positives = 119/121 (98%)
Frame = +1
Query: 55 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 234
DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA
Sbjct: 319 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 378
Query: 235 NNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NNAKAM+ARAEAIKALVKPKEVKP IPKGGSRKL+RLAYIAHPKLGKRARARIAKGLR C
Sbjct: 379 NNAKAMAARAEAIKALVKPKEVKPKIPKGGSRKLNRLAYIAHPKLGKRARARIAKGLRLC 438
Query: 415 R 417
R
Sbjct: 439 R 439
>ref|XP_536523.2| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 197
Score = 229 bits (585), Expect(2) = 5e-62
Identities = 112/121 (92%), Positives = 116/121 (95%)
Frame = +1
Query: 55 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 234
DMAKSKNHTTHNQSRKWHRNGIKKP+SQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA
Sbjct: 31 DMAKSKNHTTHNQSRKWHRNGIKKPQSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 90
Query: 235 NNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NNAKAM+ARAEAIKALVKPK+VKPNIPKGGSRKL+ LAYI HPKLGK A ARIAKGLR C
Sbjct: 91 NNAKAMAARAEAIKALVKPKKVKPNIPKGGSRKLNGLAYITHPKLGKCAHARIAKGLRLC 150
Query: 415 R 417
R
Sbjct: 151 R 151
Score = 26.6 bits (57), Expect(2) = 5e-62
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 512 PRPPQKLHNRGVYLPM 559
PRPPQ+L RG LP+
Sbjct: 182 PRPPQRLQRRGFCLPV 197
>ref|XP_533530.2| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 168
Score = 228 bits (582), Expect = 3e-60
Identities = 111/119 (93%), Positives = 113/119 (94%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNM FAKKHNKKGLKKMQ N
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMHFAKKHNKKGLKKMQVN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NAKAM+ RAEAIKALVKPKEVKP IPKGGS KL+RLAYIAHPKLGKRARARIAKGLR C
Sbjct: 61 NAKAMTVRAEAIKALVKPKEVKPKIPKGGSHKLNRLAYIAHPKLGKRARARIAKGLRLC 119
>ref|XP_533388.2| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 275
Score = 222 bits (566), Expect = 2e-58
Identities = 110/121 (90%), Positives = 115/121 (95%)
Frame = +1
Query: 55 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 234
DMAKSKNHT HNQSRKWHRNGIKKP+SQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA
Sbjct: 31 DMAKSKNHTMHNQSRKWHRNGIKKPQSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 90
Query: 235 NNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NNAKA++ARAEAIKALVKPKEVKP IPKGGSRKL++LAYIAHPKLGK ARIAKGLR C
Sbjct: 91 NNAKAVAARAEAIKALVKPKEVKPKIPKGGSRKLNQLAYIAHPKLGK--HARIAKGLRLC 148
Query: 415 R 417
R
Sbjct: 149 R 149
>ref|XP_854138.1| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 123
Score = 218 bits (556), Expect = 3e-57
Identities = 107/120 (89%), Positives = 113/120 (94%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKP SQRYESLKGVD KFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPWSQRYESLKGVDLKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKAM+ARAEAIKA+VKP+EV+P IPKGGS KL+RLAYIAHPKLGKRA A IAKGLR C+
Sbjct: 61 NAKAMTARAEAIKAIVKPQEVRPKIPKGGSHKLNRLAYIAHPKLGKRAHACIAKGLRLCQ 120
>ref|XP_533422.2| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 189
Score = 217 bits (552), Expect = 9e-57
Identities = 108/121 (89%), Positives = 113/121 (93%)
Frame = +1
Query: 55 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 234
DMAKSKNHT HNQSRKWHRNGIKKPRS+RY SLKGVDPKFLRNM FAKKH KKGLKK+QA
Sbjct: 28 DMAKSKNHTMHNQSRKWHRNGIKKPRSRRYGSLKGVDPKFLRNMHFAKKH-KKGLKKIQA 86
Query: 235 NNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NNAKAM+ARAEAIKALVKPKEVKP IPKGGSRKL+RLAYI HPK+GKRARA IAKGLR C
Sbjct: 87 NNAKAMTARAEAIKALVKPKEVKPKIPKGGSRKLNRLAYITHPKVGKRARACIAKGLRLC 146
Query: 415 R 417
R
Sbjct: 147 R 147
>ref|XP_536681.1| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 174
Score = 214 bits (544), Expect = 7e-56
Identities = 107/120 (89%), Positives = 110/120 (91%)
Frame = +1
Query: 55 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 234
DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNM FAKKHNKKGLKKMQ
Sbjct: 12 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMCFAKKHNKKGLKKMQV 71
Query: 235 NNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NNAKAM+A AEAIKALVKPKEVKP IPKGGSRKL++LA IAHP L K ARA IAKGLR C
Sbjct: 72 NNAKAMTAFAEAIKALVKPKEVKPKIPKGGSRKLNQLACIAHPNLRKCARACIAKGLRLC 131
>ref|XP_548909.2| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 131
Score = 210 bits (534), Expect = 1e-54
Identities = 104/120 (86%), Positives = 106/120 (88%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKP SQRYESLKGVDPKFLRNM FAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPLSQRYESLKGVDPKFLRNMHFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKAM+ AEA KALVKPK V P IPKGGS KL+ AYIAHPKL K ARARIAKGLR CR
Sbjct: 61 NAKAMTVSAEATKALVKPKVVNPKIPKGGSCKLNLFAYIAHPKLRKHARARIAKGLRLCR 120
>ref|XP_854583.1| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 135
Score = 203 bits (516), Expect = 1e-52
Identities = 99/114 (86%), Positives = 104/114 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSK+HTTHNQSRKWHRN IKK RSQRYES KG+DPKFLRNMRFAKKHNKKGLK MQAN
Sbjct: 1 MAKSKSHTTHNQSRKWHRNVIKKLRSQRYESFKGIDPKFLRNMRFAKKHNKKGLKNMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAK 399
NAKAM+ AEAIKALVKPKE KP IPKGGSRKL+RLAYIAHPKLGKRARA + K
Sbjct: 61 NAKAMTVHAEAIKALVKPKEAKPKIPKGGSRKLNRLAYIAHPKLGKRARAALPK 114
>ref|XP_855223.1| PREDICTED: similar to 60S ribosomal protein L29 (Cell surface
heparin binding protein HIP) [Canis familiaris].
Length = 133
Score = 179 bits (455), Expect = 2e-45
Identities = 88/107 (82%), Positives = 94/107 (87%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAK KNHT HNQS+KWHRNGIKK +SQRY+SLK VDPKFLRNM FAKKHNKKGLKKMQ N
Sbjct: 1 MAKFKNHTMHNQSQKWHRNGIKKLQSQRYKSLKRVDPKFLRNMCFAKKHNKKGLKKMQTN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKR 378
NAKAM+ARAEAIKALVKPKEVKP IPKG S KL+RL Y HPKL +R
Sbjct: 61 NAKAMTARAEAIKALVKPKEVKPKIPKGNSHKLNRLTYTTHPKLRER 107
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,090,849
Number of extensions: 620786
Number of successful extensions: 2130
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2127
Number of HSP's successfully gapped: 12
Length of query: 226
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,574,240
Effective search space: 1977928480
Effective search space used: 1977928480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001340
(680 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000983.1| 60S ribosomal protein L29 [Homo sapiens]. 234 4e-62
>ref|NP_000983.1| 60S ribosomal protein L29 [Homo sapiens].
Length = 159
Score = 234 bits (598), Expect = 4e-62
Identities = 116/120 (96%), Positives = 116/120 (96%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKAMSARAEAIKALVKPKEVKP IPKG SRKL RLAYIAHPKLGKRARARIAKGLR CR
Sbjct: 61 NAKAMSARAEAIKALVKPKEVKPKIPKGVSRKLDRLAYIAHPKLGKRARARIAKGLRLCR 120
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,681,163
Number of extensions: 612658
Number of successful extensions: 1988
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1987
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,033,728
Effective search space: 1909283456
Effective search space used: 1909283456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001340
(680 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086728.1| PREDICTED: 60S ribosomal protein L29-like [M... 208 3e-54
Alignment gi|XP_146296.7| PREDICTED: 60S ribosomal protein L29-like [Mus ... 207 4e-54
Alignment gi|XP_003085397.1| PREDICTED: 60S ribosomal protein L29-like [M... 207 6e-54
Alignment gi|XP_979163.1| PREDICTED: 60S ribosomal protein L29-like isofo... 207 6e-54
Alignment gi|XP_003085375.1| PREDICTED: 60S ribosomal protein L29-like [M... 207 6e-54
Alignment gi|XP_001475761.1| PREDICTED: 60S ribosomal protein L29 isoform... 207 6e-54
Alignment gi|XP_990228.1| PREDICTED: 60S ribosomal protein L29-like [Mus ... 207 6e-54
Alignment gi|XP_003086537.1| PREDICTED: 60S ribosomal protein L29-like [M... 207 6e-54
Alignment gi|XP_996735.1| PREDICTED: 60S ribosomal protein L29-like [Mus ... 207 6e-54
Alignment gi|XP_003086203.1| PREDICTED: 60S ribosomal protein L29-like [M... 207 6e-54
>ref|XP_003086728.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 161
Score = 208 bits (529), Expect = 3e-54
Identities = 111/174 (63%), Positives = 126/174 (72%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQS KWHRNGIKKPRSQRY+SLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSHKWHRNGIKKPRSQRYKSLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SA AEAIKALVKP+ +KP +PKG S KL+RLA+IAHPKLGK+ R+ +AKG R C+
Sbjct: 61 NAKAVSAHAEAIKALVKPQAIKPKMPKGRSHKLNRLAFIAHPKLGKQIRSYMAKGQRLCQ 120
Query: 418 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPTKAPQ*RCLSANVRTEGLV 579
QAP KAP R L +V+T+GL+
Sbjct: 121 -----------PKPKVQTKAGAKAPAQAPEGAQAPVKAPLKRFL--HVKTDGLL 161
>ref|XP_146296.7| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 186
Score = 207 bits (528), Expect = 4e-54
Identities = 112/175 (64%), Positives = 126/175 (72%)
Frame = +1
Query: 55 DMAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQA 234
D AKSKNHTTHNQSRKWHRNGIKKPRSQRY+SLKGVDPKFLRNMRFAKKH KKGLKKMQA
Sbjct: 25 DTAKSKNHTTHNQSRKWHRNGIKKPRSQRYKSLKGVDPKFLRNMRFAKKHIKKGLKKMQA 84
Query: 235 NNAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFC 414
NNAKA+S RAEAIKALVKP+ VKP +PKG S KL+RLA+IAHPKLGK+ R+ +AKG R C
Sbjct: 85 NNAKAVSVRAEAIKALVKPQAVKPKMPKGRSHKLNRLAFIAHPKLGKQIRSYMAKGQRLC 144
Query: 415 RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPTKAPQ*RCLSANVRTEGLV 579
+ QAP KAP R L +V+T+GL+
Sbjct: 145 Q-----------PKPKVQTKAEAKAPAQAPEGAQAPVKAPLKRLL--HVKTDGLL 186
>ref|XP_003085397.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_979163.1| PREDICTED: 60S ribosomal protein L29-like isoform 2 [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_003085375.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_001475761.1| PREDICTED: 60S ribosomal protein L29 isoform 1 [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_990228.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_003086537.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_996735.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
>ref|XP_003086203.1| PREDICTED: 60S ribosomal protein L29-like [Mus musculus].
Length = 160
Score = 207 bits (527), Expect = 6e-54
Identities = 102/120 (85%), Positives = 110/120 (91%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKA+SARAEAIKALVKP+ +KP +PKG KL RLA+IAHPKLGKR R+ +AKG R C+
Sbjct: 61 NAKAVSARAEAIKALVKPQAIKPKMPKG--PKLKRLAFIAHPKLGKRIRSYMAKGQRLCQ 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 20,968,297
Number of extensions: 516940
Number of successful extensions: 1753
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 1715
Number of HSP's successfully gapped: 42
Length of query: 226
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 128
Effective length of database: 12,674,031
Effective search space: 1622275968
Effective search space used: 1622275968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001340
(680 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999115.1| 60S ribosomal protein L29 [Sus scrofa]. 248 2e-66
>ref|NP_999115.1| 60S ribosomal protein L29 [Sus scrofa].
Length = 160
Score = 248 bits (633), Expect = 2e-66
Identities = 128/160 (80%), Positives = 128/160 (80%)
Frame = +1
Query: 58 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 237
MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKKGLKKMQAN 60
Query: 238 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 417
NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR
Sbjct: 61 NAKAMSARAEAIKALVKPKEVKPNIPKGGSRKLSRLAYIAHPKLGKRARARIAKGLRFCR 120
Query: 418 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAPTKAPQ 537
QAPTKAPQ
Sbjct: 121 PKSQAKAQSKAKATAGGTAAAPVPPASAPKGAQAPTKAPQ 160
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 15,832,117
Number of extensions: 431892
Number of successful extensions: 1290
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,978,717
Effective search space: 1176211927
Effective search space used: 1176211927
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001340
(680 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 991 0.0
Sscrofa_Chr13 979 0.0
Sscrofa_Chr02 959 0.0
Sscrofa_Chr03 357 5e-96
gb|JH118727.1| Sus scrofa unplaced genomic scaffold ChrUScaf2070 226 1e-56
Sscrofa_Chr05 226 1e-56
Sscrofa_ChrY 178 3e-42
Sscrofa_Chr17 149 2e-33
gb|GL894914.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 109 2e-21
Sscrofa_Chr10 94 1e-16
>Sscrofa_Chr01
|| Length = 315321322
Score = 991 bits (500), Expect = 0.0
Identities = 610/646 (94%), Gaps = 3/646 (0%)
Strand = Plus / Minus
Query: 10 gctcttccggccccaggcgcttcgggatcggccgaaccgggtgcagacatggcgaagtcc 69
|||||||| | |||||| |||| |||||| ||||| || ||| |||||||||||||||||
Sbjct: 139633684 gctcttccagtcccaggagctttgggatcagccgagccaggtacagacatggcgaagtcc 139633625
Query: 70 aagaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaaccc 129
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139633624 aagaaccacaccacacataatcagtcccgaaaatggcacagaaacggcatcaagaaacct 139633565
Query: 130 cgatcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaatatgcgc 189
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 139633564 cgatgacaacgatatgaatctcttaatggggtggaccccaagttcctgcggaacatgcgc 139633505
Query: 190 tttgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacgccaaggcc 249
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 139633504 tttgccaaggagcacaacaagaagggcctaaagaagatgcaggccaacaatgccaaggcc 139633445
Query: 250 atgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaac 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139633444 atgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaac 139633385
Query: 310 atcccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcaccccaaactt 369
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 139633384 atcccaaaggttggcagccgcaagctcagtcgacctgcgtacattgctcaccccaaactt 139633325
Query: 370 gggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaagtcccag 429
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 139633324 gggaaacgtgctcgtgcccgcatcgccaagggcctcaggctctgccggccgaagtcccag 139633265
Query: 430 gccaaggctcagtccaaggccaaggccacagctggaggtacagctgcagctccagttcct 489
||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct: 139633264 gccaacgctcagtccaaggccaaggccacagctggatgtgcagttgcagctccagttcct 139633205
Query: 490 ccagcctcggctcccaaaggtgcccaggcccccacaaaagctccacaatagaggtgttta 549
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 139633204 ccagcctcagctcccaaaggtgcccaggccaccacaaaagctccacaatagagttgttta 139633145
Query: 550 tctgccaatgtgaggacagaaggactggtgtgatccctgggctgctgtctatacggggct 609
|||||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||
Sbjct: 139633144 tctgccaatgtgaggacagaaggactggtgtgatcccttggctgtggtttatatggggct 139633085
Query: 610 ggtgtcctg---tgtttgtacaaataaacctgcctcaggatctgtc 652
||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 139633084 ggtgtcctgtgctgtttgtacaaatatacctgcctcaggatctgtc 139633039
Score = 648 bits (327), Expect = 0.0
Identities = 575/650 (88%), Gaps = 22/650 (3%)
Strand = Plus / Minus
Query: 10 gctcttccggccccaggcgcttcgggatcggccgaaccgggtgcagacatggcgaagtcc 69
||||||||||||||||| ||||||||||||||||| ||| || ||||||||| ||||||
Sbjct: 143034281 gctcttccggccccaggtgcttcgggatcggccgacccgagtacagacatggtgaagtcg 143034222
Query: 70 aagaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaaccc 129
||||||||||||| || ||||||||||| | ||||||||||| | |||||||||||||||
Sbjct: 143034221 aagaaccacaccatgcttaatcagtccccagaatggcacagagatggcatcaagaaaccc 143034162
Query: 130 cgatcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaatatgcgc 189
|||||||||||||||| |||||||||||||||||||||||| |||| |||| |||| |
Sbjct: 143034161 tgatcacaacgatatgactctcttaagggggtggaccccaagctcctaaggaacatgcac 143034102
Query: 190 tttgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacgccaaggcc 249
||| ||||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||
Sbjct: 143034101 ttttccaagaagcacaacaagaaaggcctaaggaagatgctggccaacaatgccaaggcc 143034042
Query: 250 atgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaac 309
||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||
Sbjct: 143034041 atgagtgcatgtgctgaagctatcatggttcttgtaaaacccaaggaggtcaagcccaac 143033982
Query: 310 atcccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcaccccaaactt 369
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||
Sbjct: 143033981 atcccaaagggtggcagccgcaagctcagtcgacttgcctacattgttcaccccaagctt 143033922
Query: 370 gggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaagtcccag 429
|| ||| ||||| |||| ||| ||| |||||||||||| |||||||||| |||||||||
Sbjct: 143033921 ggcaaatgtgcttgtgcctgcaacgc-aagggcctcaggctctgccggcccaagtcccag 143033863
Query: 430 gccaaggctcagtccaaggccaaggccacagctggaggtacagctgcagctccagttcct 489
|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 143033862 gccaaggctct----aaggccaaggccacagctggaggtatggctgcagctccag---ct 143033810
Query: 490 ccagcctcggctcccaaaggtgcccagg-cccccacaaaagctccacaatagaggtgttt 548
| || | ||||||||| ||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 143033809 ctggctccagctcccaaa-gtgcccaggccccccacaaaagctccacaatagaggcgttt 143033751
Query: 549 atctgccaatgtgaggacagaaggactggtgtgatccctgggctgctgtctatacggggc 608
|||||||||||||||| | |||||||||||||||||||| ||||||| || |||||
Sbjct: 143033750 atctgccaatgtgagg---gcaggactggtgtgatccctgg---gctgtctctatggggc 143033697
Query: 609 tggtgtc---ctgtg---tttgtacaaataaacctgcctcaggatctgtc 652
||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct: 143033696 tggtgtccttctgtgatatttgtacaaataaacctgcagcaggatctgtc 143033647
Score = 523 bits (264), Expect = e-146
Identities = 482/554 (87%), Gaps = 3/554 (0%)
Strand = Plus / Minus
Query: 64 aagtccaagaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaag 123
|||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct: 295164565 aagtccaagaaccacaccacgcataatcagtcccaaaagtggcacagaaacagcatcaag 295164506
Query: 124 aaaccccgatcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaat 183
|||||| |||||||| ||||||| | |||||||||||||||| |||||||||| ||||
Sbjct: 295164505 aaaccctgatcacaattatatgaaccccttaagggggtggacctcaagttcctgaggaac 295164446
Query: 184 atgcgctttgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacgcc 243
|||| |||||||||||| ||||| ||||||||||||| |||||| |||||||||| |||
Sbjct: 295164445 atgcactttgccaagaatcacaatgagaagggcctaaataagatgtaggccaacaaagcc 295164386
Query: 244 aaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaag 303
|||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 295164385 aaggccatgaatgcatgtgctgaagctatcaaggttcttgtaaaacccaaggaggtcaag 295164326
Query: 304 cctaacatcccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcacccc 363
|| || |||||| |||||||||||| ||| |||||||||||||| || ||||||||| |
Sbjct: 295164325 cccaatatcccatagggtggcagccacaaactcagtcgacttgcctatgttgctcaccgc 295164266
Query: 364 aaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaag 423
|| |||||||||| ||||| | | | || | |||||| |||||| ||| |||||||
Sbjct: 295164265 aagcttgggaaacatgctcattcccatatggacaagggtctcaggctcttatagccaaag 295164206
Query: 424 tcccaggccaaggctcagtccaaggccaaggccacagctggaggtacagctgcagctcca 483
||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||
Sbjct: 295164205 tcccatgccaaggctcagaccaaggccaaggctgcagctggaggtacagctacaggtcca 295164146
Query: 484 gttcctccagcctcggctcccaaaggtgcccaggcccccacaaaagctccacaatagagg 543
| ||| | |||||| ||| ||||||| |||||||| || | |||||||||||||
Sbjct: 295164145 g---ctctggttctggctcctaaaagtgcccaagcccccaccaaggttccacaatagagg 295164089
Query: 544 tgtttatctgccaatgtgaggacagaaggactggtgtgatccctgggctgctgtctatac 603
||||||||||||| |||||||||||||| |||||||||||| ||| |||||||||||||
Sbjct: 295164088 tgtttatctgccagtgtgaggacagaagcactggtgtgatctctgtgctgctgtctatat 295164029
Query: 604 ggggctggtgtcct 617
| ||||||||||||
Sbjct: 295164028 gaggctggtgtcct 295164015
Score = 448 bits (226), Expect = e-123
Identities = 483/571 (84%), Gaps = 22/571 (3%)
Strand = Plus / Minus
Query: 49 ggtgcagacatggcgaagtccaagaaccacaccacgcataatcagtcccgaaaatggcac 108
||||||||||||||||||||||||||||||||||| | ||||| || | ||| ||| ||
Sbjct: 295684630 ggtgcagacatggcgaagtccaagaaccacaccacaaaaaatcaatctctaaagtggtac 295684571
Query: 109 agaaacggcatcaagaaaccccgatcacaacgatatgaatctcttaagggggtggacccc 168
||||| | |||||| | |||| |||||||| |||||||||| |||||| |||||||||||
Sbjct: 295684570 agaaatgacatcaaaataccctgatcacaatgatatgaatcccttaagagggtggacccc 295684511
Query: 169 aagttcctgcggaatatgcgctttgccaagaagcacaacaagaagggcctaaagaagatg 228
||||| ||| |||| |||| ||| | ||||||||||| ||||||||||||||||||||
Sbjct: 295684510 aagtttctgaggaacatgcattttac-aagaagcacaatgagaagggcctaaagaagatg 295684452
Query: 229 caggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaa 288
|||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 295684451 caggccaacaacaccaaggccatgagtgcatatgctgaagctataaaggctcttgtaaaa 295684392
Query: 289 cccaaggaggtcaagcctaacatcccaaagggtggcagccgcaagctcagtcgacttgcg 348
||| ||||||||||||| ||||||||| |||||||||| | |||||||||| ||| |||
Sbjct: 295684391 ccctaggaggtcaagcccaacatcccatagggtggcagtcacaagctcagttgacatgcc 295684332
Query: 349 tacattgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcagg 408
||||||||||||||||| |||||||||| ||||| ||| | ||| |||||||| ||||||
Sbjct: 295684331 tacattgctcaccccaagcttgggaaacatgctcctgccctcatggccaagggtctcagg 295684272
Query: 409 ttctgccggccaaagtcccaggccaaggctcagtccaaggccaaggccacagctggaggt 468
|||||| ||||||| || ||||||||||| ||||||||| |
Sbjct: 295684271 ctctgccagccaaaggccaaggccaaggct------------------gcagctggagct 295684230
Query: 469 acagctgcagctccagttc---ctccagcctcggctcccaaaggtgcccaggcccccaca 525
||| ||||| |||||||| ||||||| | ||| |||||||||||| |||| ||||
Sbjct: 295684229 acaattgcagatccagttctggctccagctctgactctcaaaggtgcccaagcccacaca 295684170
Query: 526 aaagctccacaatagaggtgtttatctgccaatgtgaggacagaaggactggtgtgatcc 585
|| |||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct: 295684169 aagtctccacaatagaggtgcttatctgccactgtgaggacagaagcactggtgtgatcc 295684110
Query: 586 ctgggctgctgtctatacggggctggtgtcc 616
|| |||||||||||||| |||||||||||||
Sbjct: 295684109 cttggctgctgtctatatggggctggtgtcc 295684079
Score = 406 bits (205), Expect = e-111
Identities = 473/559 (84%), Gaps = 5/559 (0%)
Strand = Plus / Plus
Query: 64 aagtccaagaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaag 123
|||||||||||||||| ||| ||||||| || ||||| ||| ||||||| | |||||||
Sbjct: 296588132 aagtccaagaaccacatcacaaataatcaatctcgaaagtggtacagaaatgacatcaag 296588191
Query: 124 aaaccccgatcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaat 183
||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 296588192 aaaccccaatcacaatgatatgaatgccttaagggggtggaccccaagttcctgaggaac 296588251
Query: 184 atgcgctttgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacg-c 242
|||| || ||||||||||||||| |||||||||||||||||||| ||| |||||| | |
Sbjct: 296588252 atgcactgtgccaagaagcacaatgagaagggcctaaagaagatgaaggacaacaatggc 296588311
Query: 243 caaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaa 302
|||||||||||||||| ||||||||||||| | ||| || |||||||||||||||||||
Sbjct: 296588312 caaggccatgagtgcatgtgctgaagctatacatgctattataaaacccaaggaggtcaa 296588371
Query: 303 gcctaacatcccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcaccc 362
| | |||||||| |||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct: 296588372 gtccaacatcccttagggtggcagccacaagctcagtcgacttgcctacattgttcaccc 296588431
Query: 363 caaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaa 422
||| ||||||||| |||||| ||| | ||| ||| |||| |||||| ||| || || |||
Sbjct: 296588432 caagcttgggaaatgtgctcatgccctcatggcccagggtctcaggctcttcctgcaaaa 296588491
Query: 423 gtcccaggccaaggctcagtccaaggccaaggccacagctggaggtacagctgcagctcc 482
||||||||||||||||||| ||||||||||||| ||||||||||| |||||| || |
Sbjct: 296588492 gtcccaggccaaggctcagaccaaggccaaggctgcagctggaggtccagctgtagggtc 296588551
Query: 483 agttc---ctccagcctcggctc-ccaaaggtgcccaggcccccacaaaagctccacaat 538
|| || ||| || | | | ||||| ||||||| || | | ||| |||||| |
Sbjct: 296588552 agctctggctctggctccagagctccaaatgtgcccaatcctcaataaagtttccacatt 296588611
Query: 539 agaggtgtttatctgccaatgtgaggacagaaggactggtgtgatccctgggctgctgtc 598
||||| |||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 296588612 agaggcatttatctgccaatgtgaggacagaagcatttgtgtgatccctgggctgctgtc 296588671
Query: 599 tatacggggctggtgtcct 617
|||| ||| ||| ||||||
Sbjct: 296588672 tatatgggtctgttgtcct 296588690
Score = 400 bits (202), Expect = e-109
Identities = 453/539 (84%), Gaps = 22/539 (4%)
Strand = Plus / Minus
Query: 49 ggtgcagacatggcgaagtccaagaaccacaccacgcataatcagtcccgaaaatggcac 108
||||||||||||||||||||||||||||||||||| | ||||| || | ||| ||| ||
Sbjct: 295723047 ggtgcagacatggcgaagtccaagaaccacaccacaaaaaatcaatctctaaagtggtac 295722988
Query: 109 agaaacggcatcaagaaaccccgatcacaacgatatgaatctcttaagggggtggacccc 168
||||| | |||||| | |||| |||||||| |||||||||| |||||| |||||||||||
Sbjct: 295722987 agaaatgacatcaaaataccctgatcacaatgatatgaatcccttaagagggtggacccc 295722928
Query: 169 aagttcctgcggaatatgcgctttgccaagaagcacaacaagaagggcctaaagaagatg 228
||||| ||| |||| |||| ||| | ||||||||||| ||||||||||||||||||||
Sbjct: 295722927 aagtttctgaggaacatgcattttac-aagaagcacaatgagaagggcctaaagaagatg 295722869
Query: 229 caggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaa 288
|||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 295722868 caggccaacaacaccaaggccatgagtgcatatgctgaagctataaaggctcttgtaaaa 295722809
Query: 289 cccaaggaggtcaagcctaacatcccaaagggtggcagccgcaagctcagtcgacttgcg 348
||| ||||||||||||| ||||||||| |||||||||| | |||||||||| ||| |||
Sbjct: 295722808 ccctaggaggtcaagcccaacatcccatagggtggcagtcacaagctcagttgacatgcc 295722749
Query: 349 tacattgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcagg 408
||||||||||||||||| |||||||||| ||||| ||| | ||| |||||||| ||||||
Sbjct: 295722748 tacattgctcaccccaagcttgggaaacatgctcctgccctcatggccaagggtctcagg 295722689
Query: 409 ttctgccggccaaagtcccaggccaaggctcagtccaaggccaaggccacagctggaggt 468
|||||| ||||||| || ||||||||||| ||||||||| |
Sbjct: 295722688 ctctgccagccaaaggccaaggccaaggct------------------gcagctggagct 295722647
Query: 469 acagctgcagctccagttc---ctccagcctcggctcccaaaggtgcccaggcccccaca 525
||| ||||| |||||||| ||||||| | ||| |||||||||||| |||| ||||
Sbjct: 295722646 acaattgcagatccagttctggctccagctctgactctcaaaggtgcccaagcccacaca 295722587
Query: 526 aaagctccacaatagaggtgtttatctgccaatgtgaggacagaaggactggtgtgatc 584
|| |||||||||||||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 295722586 aagtctccacaatagaggtgcttatctgccactgtgaggacagaagcactggtgtgatc 295722528
Score = 377 bits (190), Expect = e-102
Identities = 443/528 (83%), Gaps = 27/528 (5%)
Strand = Plus / Minus
Query: 11 ctcttccggccccaggcgcttcgggatcggccgaaccgggtgcagacatggcgaagtcca 70
||||||| |||||||| |||| ||||| |||| | |||| |||||| ||| |||||||
Sbjct: 32417171 ctcttccagccccaggtgctttgggattggccagccggggtacagacaaggcaaagtcca 32417112
Query: 71 agaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaacccc 130
|||||||||||| ||| ||||||||||||||||| ||| |||| ||| |||||||||
Sbjct: 32417111 agaaccacaccaagcagaatcagtcccgaaaatgacacggaaatagcaacaagaaaccaa 32417052
Query: 131 gatcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaatatgcgct 190
||||||| |||||||||||| ||| |||||||||||||||||||| |||| |||||||
Sbjct: 32417051 tgtcacaacaatatgaatctctcaagtgggtggaccccaagttcctgaggaacatgcgct 32416992
Query: 191 ttgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacgccaaggcca 250
|||||||||||||||| || |||||||||||||||| |||| |||||
Sbjct: 32416991 ttgccaagaagcacaa---gaggggcctaaagaagatgtaggcaaacaa----------- 32416946
Query: 251 tgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaaca 310
||||| ||||||||||||||| ||||||||| |||||||||||||||||||| || |
Sbjct: 32416945 ---gtgcatgtgctgaagctatcagggctcttgtcaaacccaaggaggtcaagcccaata 32416889
Query: 311 tcccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcaccccaaacttg 370
||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| ||||
Sbjct: 32416888 tcccaaagggtggcagccgcaagctcagttgacttgcctgcattgctcaccccaagcttg 32416829
Query: 371 ggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaagtcccagg 430
|||||||||||||||| | || |||||||| ||||||| | ||| |||||||||||||
Sbjct: 32416828 ggaaacgtgctcgtgcccatattgccaagggtttcaggttgtaccgcccaaagtcccagg 32416769
Query: 431 ccaaggctcagtccaaggccaaggccacagctggaggtacagctgcagctccagttcctc 490
||||| ||||| |||||| ||||||||| ||||| ||||||||||||| ||||
Sbjct: 32416768 ccaagcctcagaccaagg-caaggccac------aggtaaagctgcagctcca---cctc 32416719
Query: 491 cagcctcggctcccaaaggtgcccaggcccccacaaaagctccacaat 538
|||| |||||||| |||| |||||||||||||||| |||||||||
Sbjct: 32416718 cagctctggctcccagaggtccccaggcccccacaaagactccacaat 32416671
Score = 363 bits (183), Expect = 8e-98
Identities = 394/463 (85%), Gaps = 1/463 (0%)
Strand = Plus / Minus
Query: 12 tcttccggccccaggcgcttcgggatcggccgaaccgggtgcagacatggcgaagtccaa 71
|||||| ||||||||| |||| ||||| || || || |||||||||||||||||||||||
Sbjct: 296072025 tcttccagccccaggcacttcaggatcagctgaccctggtgcagacatggcgaagtccaa 296071966
Query: 72 gaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaaccccg 131
|||||||||||| ||||||| || | || ||| |||||||| ||||||||||| ||
Sbjct: 296071965 gaaccacaccacaaataatcaatcttgcaagtggtacagaaacaacatcaagaaactcca 296071906
Query: 132 atcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaatatgcgctt 191
|| |||| |||||||||| |||||||||||||||||||| |||||| |||| |||| |||
Sbjct: 296071905 ataacaatgatatgaatcccttaagggggtggaccccaaattcctgaggaacatgcactt 296071846
Query: 192 tgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacgccaaggccat 251
| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 296071845 ttccaagaatcacaatgagaagggcctaaagaagatgcaggccaacaacaccaaggctga 296071786
Query: 252 gagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaacat 311
||||||| ||||||||||| ||| ||||||||||||||||||| ||||||||| | ||
Sbjct: 296071785 gagtgcatgtgctgaagctctcagggctcttgtaaaacccaagaaggtcaagcacattat 296071726
Query: 312 cccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcaccccaaacttgg 371
|||| ||||||||||| |||||||||| ||||||| |||| ||||| || ||||||
Sbjct: 296071725 cccatagggtggcagcaacaagctcagttgacttgcctacactgctctccatgaacttgt 296071666
Query: 372 gaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaagtcccaggc 431
||||| | ||| ||| | | | |||||| | | |||||||||| ||||||||||||||||
Sbjct: 296071665 gaaacatactcttgccctcttggccaagtgtc-caggttctgctggccaaagtcccaggc 296071607
Query: 432 caaggctcagtccaaggccaaggccacagctggaggtacagct 474
|||||||||| ||||||||||||| |||||||||||||||
Sbjct: 296071606 caaggctcagaccaaggccaaggctgtggctggaggtacagct 296071564
Score = 129 bits (65), Expect = 2e-27
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 517 gcccccacaaaagctccacaatagaggtgtttatctgccaatgtgaggacagaaggactg 576
||||||||||| |||||||||||||||||||||||||||| | |||||||||||| | ||
Sbjct: 296071548 gcccccacaaaggctccacaatagaggtgtttatctgccactctgaggacagaagcaatg 296071489
Query: 577 gtgtgatccctgggctgctgtctatacggggctggtgtcct 617
|| |||||||| |||||||||| ||| ||||||||||||||
Sbjct: 296071488 gtatgatcccttggctgctgtcaatatggggctggtgtcct 296071448
Score = 127 bits (64), Expect = 8e-27
Identities = 82/88 (93%)
Strand = Plus / Minus
Query: 530 ctccacaatagaggtgtttatctgccaatgtgaggacagaaggactggtgtgatccctgg 589
|||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 32416392 ctccacaatagaggcgtttacctgccaatgtgaggacagaagaactggtgtgatccctgg 32416333
Query: 590 gctgctgtctatacggggctggtgtcct 617
||| |||||||| ||||||||||||||
Sbjct: 32416332 gctattgtctatatggggctggtgtcct 32416305
Score = 109 bits (55), Expect = 2e-21
Identities = 95/107 (88%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 354 tgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctg 413
|||||||||||| |||||||||| ||||||||| | || |||||||| |||||| | ||
Sbjct: 32573970 tgctcaccccaagcttgggaaacatgctcgtgcccatattgccaagggtctcaggctgtg 32573911
Query: 414 ccggccaaagtcccaggccaaggctcagtccaaggccaaggccacag 460
||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 32573910 ccgcccaaagtcccaggccaaggctcagaccaagg-caaggccacag 32573865
>Sscrofa_Chr13
|| Length = 218635234
Score = 979 bits (494), Expect = 0.0
Identities = 494/494 (100%)
Strand = Plus / Minus
Query: 159 ggtggaccccaagttcctgcggaatatgcgctttgccaagaagcacaacaagaagggcct 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316728 ggtggaccccaagttcctgcggaatatgcgctttgccaagaagcacaacaagaagggcct 37316669
Query: 219 aaagaagatgcaggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316668 aaagaagatgcaggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggc 37316609
Query: 279 tcttgtaaaacccaaggaggtcaagcctaacatcccaaagggtggcagccgcaagctcag 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316608 tcttgtaaaacccaaggaggtcaagcctaacatcccaaagggtggcagccgcaagctcag 37316549
Query: 339 tcgacttgcgtacattgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316548 tcgacttgcgtacattgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaa 37316489
Query: 399 gggcctcaggttctgccggccaaagtcccaggccaaggctcagtccaaggccaaggccac 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316488 gggcctcaggttctgccggccaaagtcccaggccaaggctcagtccaaggccaaggccac 37316429
Query: 459 agctggaggtacagctgcagctccagttcctccagcctcggctcccaaaggtgcccaggc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316428 agctggaggtacagctgcagctccagttcctccagcctcggctcccaaaggtgcccaggc 37316369
Query: 519 ccccacaaaagctccacaatagaggtgtttatctgccaatgtgaggacagaaggactggt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316368 ccccacaaaagctccacaatagaggtgtttatctgccaatgtgaggacagaaggactggt 37316309
Query: 579 gtgatccctgggctgctgtctatacggggctggtgtcctgtgtttgtacaaataaacctg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37316308 gtgatccctgggctgctgtctatacggggctggtgtcctgtgtttgtacaaataaacctg 37316249
Query: 639 cctcaggatctgtc 652
||||||||||||||
Sbjct: 37316248 cctcaggatctgtc 37316235
Score = 135 bits (68), Expect = 3e-29
Identities = 68/68 (100%)
Strand = Plus / Minus
Query: 95 cccgaaaatggcacagaaacggcatcaagaaaccccgatcacaacgatatgaatctctta 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37317732 cccgaaaatggcacagaaacggcatcaagaaaccccgatcacaacgatatgaatctctta 37317673
Query: 155 agggggtg 162
||||||||
Sbjct: 37317672 agggggtg 37317665
Score = 91.7 bits (46), Expect = 5e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 49 ggtgcagacatggcgaagtccaagaaccacaccacgcataatcagt 94
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37318054 ggtgcagacatggcgaagtccaagaaccacaccacgcataatcagt 37318009
Score = 83.8 bits (42), Expect = 1e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 11 ctcttccggccccaggcgcttcgggatcggccgaaccgggtg 52
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37318520 ctcttccggccccaggcgcttcgggatcggccgaaccgggtg 37318479
>Sscrofa_Chr02
|| Length = 162569375
Score = 959 bits (484), Expect = 0.0
Identities = 555/578 (96%), Gaps = 3/578 (0%)
Strand = Plus / Plus
Query: 78 caccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaaccccgatcaca 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85299912 caccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaaccccgatcaca 85299971
Query: 138 acgatatgaatctcttaagggggtggaccccaagttcctgcggaatatgcgctttgccaa 197
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 85299972 acgatatgaatctcttaagggggtggactccaagttcctgtggaatatgcgctttgccaa 85300031
Query: 198 gaagcacaacaagaagggcctaaagaagatgcaggccaacaacgccaaggccatgagtgc 257
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 85300032 gaagcacaacaagaagggcctaaagaagatgtaggccaacaacgccaaggccatgagtgc 85300091
Query: 258 acgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaacatcccaaa 317
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 85300092 acgtgctgaagctatcaaggctcttgtaaaacccaagggggtcaagcctaatatcccaaa 85300151
Query: 318 gggtggcagccgcaagctcagtcgacttgcgtacattgctcaccccaaacttgggaaacg 377
|||| |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 85300152 gggtagcagccacaagctcagttgacttgcatacattgctcaccccaaacttgggaaacg 85300211
Query: 378 tgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaagtcccaggccaaggc 437
||||| ||| |||| |||||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 85300212 tgctcatgcccgcaccgccaagggcctcaagctttgctggccaaagtcccaggccaaggc 85300271
Query: 438 tcagtccaaggccaaggccacagctggaggtacagctgcagctccagttcctccagcctc 497
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 85300272 tcagtccaaggccaaggccacagctgaaggtacagctgcagctccagttcctccagcctc 85300331
Query: 498 ggctcccaaaggtgcccaggcccccacaaaagctccacaatagaggtgtttatctgccaa 557
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85300332 ggctcccaaagatgcccaggcccccacaaaagctccacaatagaggtgtttatctgccaa 85300391
Query: 558 tgtgaggacagaaggactggtgtgatccctgggctgctgtctatacggggctggtgtcct 617
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 85300392 tgtgaggacagaaggactggtgtgattcctgggctgctgcctatacggggctggtgtcct 85300451
Query: 618 g---tgtttgtacaaataaacctgcctcaggatctgtc 652
| ||||||||||||||||||||||||||||||||||
Sbjct: 85300452 gtgttgtttgtacaaataaacctgcctcaggatctgtc 85300489
>Sscrofa_Chr03
|| Length = 144787322
Score = 357 bits (180), Expect = 5e-96
Identities = 486/589 (82%), Gaps = 28/589 (4%)
Strand = Plus / Plus
Query: 11 ctcttccggccccaggcgcttcgggatcggccgaaccgggtgcagacatggcgaagtcca 70
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 133898902 ctcttccagccccaggcgcttcgggatcggccgacccgggtgcagacatggcaaagtcca 133898961
Query: 71 agaaccacaccacgcataatcagtcccgaaaatggcacagaaacggcatcaagaaacccc 130
||||||||||| | ||| |||||||||||||| ||||||||||||||| || ||||||||
Sbjct: 133898962 agaaccacacc-cacatcatcagtcccgaaaagggcacagaaacggcagcaggaaacccc 133899020
Query: 131 gatcacaacgatatgaatctcttaagggggtggaccccaagttcctgcggaatatgcgct 190
||| || ||| |||||||||||||||| |||||||||||||| ||| || |||||||
Sbjct: 133899021 gatgacggcgacatgaatctcttaagggagtggaccccaagtt-ctgaggtgcatgcgct 133899079
Query: 191 ttgccaagaagcacaacaagaagggcctaaagaagatgcaggccaacaacgccaaggcca 250
||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 133899080 ttgccaagaggcacagcaagaggggcctaaagaagatgcaggccatcaacgccaaggcca 133899139
Query: 251 tgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaaggaggtcaagcctaaca 310
| |||| ||||||| |||||||||||| |||||||||| || | ||
Sbjct: 133899140 ----------ctcagaagagatcaagggccttgtaaaaccctaggaggtcaaacccagca 133899189
Query: 311 tcccaaagggtggcagccgcaagctcagtcgacttgcgtacattgctcaccccaaacttg 370
|||| || || ||||| ||| |||| ||||||||| | ||||||| |||||| ||||
Sbjct: 133899190 tccccaaaggcagcagctgcaggctccgtcgacttgactgcattgctggccccaaccttg 133899249
Query: 371 ggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgccggccaaagtcccagg 430
|||||| ||||||||| |||| || |||||||| || |||||||||||||| ||||||
Sbjct: 133899250 ggaaacctgctcgtgcctgcatggctgagggcctccggctctgccggccaaagccccagg 133899309
Query: 431 ccaaggctcagtccaaggccaaggccacagctggaggtacagctgcagctccagttcctc 490
|||||||||| |||||||||||||| ||||||||| | ||||| | ||||||
Sbjct: 133899310 tcaaggctcagaccaaggccaaggccgcagctggagatccagctccggctcca------- 133899362
Query: 491 cagcctcggctcccaaaggtgcccaggcccccacaaaagctccacaatagaggtgtttat 550
||||||||| ||||||||||||||| ||| ||||||||||| || || | |
Sbjct: 133899363 --------gctcccaaatgtgcccaggccccca-aaagtctccacaataggggcgtctgt 133899413
Query: 551 ctgccaatgtgaggacagaaggactggtgtgatccctgggctgctgtct 599
|| || ||| ||||||||||||||||||||| | || |||||||||||
Sbjct: 133899414 ctccccatgggaggacagaaggactggtgtgcttcccaggctgctgtct 133899462
>gb|JH118727.1| Sus scrofa unplaced genomic scaffold ChrUScaf2070
Length = 173902
Score = 226 bits (114), Expect = 1e-56
Identities = 245/287 (85%), Gaps = 5/287 (1%)
Strand = Plus / Minus
Query: 51 tgcagacatggcgaagtccaagaaccacaccacgcataatcagtcccgaaaatggcacag 110
|||||||||||| |||||||||||||| |||| || || || || |||||||||||||
Sbjct: 9593 tgcagacatggccaagtccaagaaccatgccacacacaagcaaccctgaaaatggcacag 9534
Query: 111 aaacggcatcaagaaaccccgatcacaacgatatgaatctcttaagggggtggaccccaa 170
|||| ||||||| |||||| ||||||| |||||| ||||||| | | ||||||||
Sbjct: 9533 aaacagcatcaaaaaaccct-atcacaatgatatgtctctctta----gatagaccccaa 9479
Query: 171 gttcctgcggaatatgcgctttgccaagaagcacaacaagaagggcctaaagaagatgca 230
||||||| |||| ||| | |||||||||||||||||||||| |||||| |||||||||||
Sbjct: 9478 gttcctgaggaacatgtgttttgccaagaagcacaacaagaggggccttaagaagatgca 9419
Query: 231 ggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacc 290
||||||||| ||||||| ||||||||||| |||| | ||||||||||||||| |||| ||
Sbjct: 9418 ggccaacaatgccaaggtcatgagtgcacatgctaaggctatcaaggctcttataaagcc 9359
Query: 291 caaggaggtcaagcctaacatcccaaagggtggcagccgcaagctca 337
| |||| |||||||| || | || ||||||||||||||| |||||||
Sbjct: 9358 ctaggaagtcaagcccaagacccgaaagggtggcagccggaagctca 9312
Score = 101 bits (51), Expect = 5e-19
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 498 ggctcccaaaggtgcccaggcccccacaaaagctccacaatagaggtgtttatctgccaa 557
|||||||||||||||||||||| ||||||| | |||| | || ||| |||||||| ||
Sbjct: 9185 ggctcccaaaggtgcccaggcctccacaaaggttccatagtaaagggctttatctgtgaa 9126
Query: 558 tgtgaggacagaaggactggtgtgatccctgggctgctg 596
|||||||||||||||| |||||||| |||||||||||||
Sbjct: 9125 tgtgaggacagaaggagtggtgtgacccctgggctgctg 9087
>Sscrofa_Chr05
|| Length = 111506441
Score = 226 bits (114), Expect = 1e-56
Identities = 245/287 (85%), Gaps = 5/287 (1%)
Strand = Plus / Minus
Query: 51 tgcagacatggcgaagtccaagaaccacaccacgcataatcagtcccgaaaatggcacag 110
|||||||||||| |||||||||||||| |||| || || || || |||||||||||||
Sbjct: 76423978 tgcagacatggccaagtccaagaaccatgccacacacaagcaaccctgaaaatggcacag 76423919
Query: 111 aaacggcatcaagaaaccccgatcacaacgatatgaatctcttaagggggtggaccccaa 170
|||| ||||||| |||||| ||||||| |||||| ||||||| | | ||||||||
Sbjct: 76423918 aaacagcatcaaaaaaccct-atcacaatgatatgtctctctta----gatagaccccaa 76423864
Query: 171 gttcctgcggaatatgcgctttgccaagaagcacaacaagaagggcctaaagaagatgca 230
||||||| |||| ||| | |||||||||||||||||||||| |||||| |||||||||||
Sbjct: 76423863 gttcctgaggaacatgtgttttgccaagaagcacaacaagaggggccttaagaagatgca 76423804
Query: 231 ggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacc 290
||||||||| ||||||| ||||||||||| |||| | ||||||||||||||| |||| ||
Sbjct: 76423803 ggccaacaatgccaaggtcatgagtgcacatgctaaggctatcaaggctcttataaagcc 76423744
Query: 291 caaggaggtcaagcctaacatcccaaagggtggcagccgcaagctca 337
| |||| |||||||| || | || ||||||||||||||| |||||||
Sbjct: 76423743 ctaggaagtcaagcccaagacccgaaagggtggcagccggaagctca 76423697
Score = 186 bits (94), Expect = 1e-44
Identities = 267/323 (82%), Gaps = 5/323 (1%)
Strand = Plus / Minus
Query: 115 ggcatcaagaaaccccgatcacaacgatatgaatctcttaagggggtggaccccaagttc 174
|||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||
Sbjct: 68640697 ggcatcaagaaaccccgatcacaagg----gaatctcttaaggggaaggaccc-aagttc 68640643
Query: 175 ctgcggaatatgcgctttgccaagaagcacaacaagaagggcctaaagaagatgcaggcc 234
||| |||| ||| |||||||||||||||||| ||||||| || |||||||||||||||
Sbjct: 68640642 ctgaggaacctgcactttgccaagaagcacaataagaaggaactgaagaagatgcaggcc 68640583
Query: 235 aacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaag 294
||||| |||||||||||| |||| | |||||| |||| | |||||| || || ||||||
Sbjct: 68640582 aacaatgccaaggccatgggtgcccatgctgaggctacgacggctctcgtgaagcccaag 68640523
Query: 295 gaggtcaagcctaacatcccaaagggtggcagccgcaagctcagtcgacttgcgtacatt 354
||| ||||||| | ||||||||||| ||||||| ||||||||| | |||| || |
Sbjct: 68640522 gagctcaagcccacgatcccaaagggcggcagccacaagctcagccaggttgccggcact 68640463
Query: 355 gctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctgc 414
||||||||||| || ||| || | ||||||||||| ||||| | |||||| |||||
Sbjct: 68640462 gctcaccccaagctcaggagacaggttcgtgctcgcaaagccaatagtctcaggctctgc 68640403
Query: 415 cggccaaagtcccaggccaaggc 437
| |||| ||||||||||||||||
Sbjct: 68640402 cagccacagtcccaggccaaggc 68640380
Score = 101 bits (51), Expect = 5e-19
Identities = 87/99 (87%)
Strand = Plus / Minus
Query: 498 ggctcccaaaggtgcccaggcccccacaaaagctccacaatagaggtgtttatctgccaa 557
|||||||||||||||||||||| ||||||| | |||| | || ||| |||||||| ||
Sbjct: 76423570 ggctcccaaaggtgcccaggcctccacaaaggttccatagtaaagggctttatctgtgaa 76423511
Query: 558 tgtgaggacagaaggactggtgtgatccctgggctgctg 596
|||||||||||||||| |||||||| |||||||||||||
Sbjct: 76423510 tgtgaggacagaaggagtggtgtgacccctgggctgctg 76423472
>Sscrofa_ChrY
|| Length = 1637716
Score = 178 bits (90), Expect = 3e-42
Identities = 371/464 (79%), Gaps = 23/464 (4%)
Strand = Plus / Minus
Query: 147 atctcttaagggggtggaccccaagttcctgcggaatatgcgctttgccaagaagcacaa 206
||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||
Sbjct: 1352211 atctcttaagggggtggaccccaagttcctgaggaatatgcactctgccaaaaagcacaa 1352152
Query: 207 caagaagggcctaaagaagatgcaggccaacaacgccaaggccatgagtgcacgtgctga 266
||| ||||||||||||||||| | |||| |||||||| |||| ||| ||||||
Sbjct: 1352151 ---gaaaggcctaaagaagatgcacacagacaagaccaaggccctgagcacacatgctga 1352095
Query: 267 agctatcaaggctcttgtaaaacccaaggaggtcaagcctaacatcccaaagggtggcag 326
|||||||||| | ||||| ||| |||||||||||||| |||||||||||||||| ||
Sbjct: 1352094 cactatcaaggcccctgtaacacctaaggaggtcaagcccaacatcccaaagggtgatag 1352035
Query: 327 ccgcaagctcagtcgacttgcgtacattgctcaccccaaacttgggaaacgtgctcgtgc 386
| |||| | ||||| | |||| |||| ||| || ||||||||| |||| |||||| |||
Sbjct: 1352034 ctgcaaacacagtcaatttgcctacactgcgcatgccaaacttgagaaaagtgctcatgc 1351975
Query: 387 tcgcatcgccaagggcctcaggttctgccggccaaagtcccaggccaaggctcagtccaa 446
| |||| || |||| ||||||||| |||||||||||||||||| ||||
Sbjct: 1351974 ccacatcacccagggtctcaggttc------------tcccaggccaaggctcagaccaa 1351927
Query: 447 ggccaaggccacagctggaggtacagctgcagctccagttcctccagcctcggctcccaa 506
| ||||| ||||| ||||| |||| || || ||| |||||| ||| || | |
Sbjct: 1351926 tgtcaaggacacaggtggagataca----cacctgcag---ctccag-ctctgcctacca 1351875
Query: 507 aggtgcccaggcccccacaaaagctccacaatagaggtgtttatctgccaatgtgaggac 566
|||||||||| |||||||||| |||||||| ||| || | | |||||||||||||||||
Sbjct: 1351874 aggtgcccagacccccacaaaggctccacattaggggcatctgtctgccaatgtgaggac 1351815
Query: 567 agaaggactggtgtgatccctgggctgctgtctatacggggctg 610
| || | ||||||||| | |||||||||| |||||| |||||||
Sbjct: 1351814 aaaaaggctggtgtgacctctgggctgctctctatatggggctg 1351771
>Sscrofa_Chr17
|| Length = 69701581
Score = 149 bits (75), Expect = 2e-33
Identities = 185/221 (83%), Gaps = 3/221 (1%)
Strand = Plus / Minus
Query: 115 ggcatcaagaaaccccgatcacaacgatatgaatctcttaagggggtggaccccaagttc 174
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 14720837 ggcatcaggaaaccccagtcacaaaaatatgaatctcttaagggggtggaccccaagttc 14720778
Query: 175 ctgcggaatatgcgctttgccaagaagcacaacaagaagggcctaaagaagatgcaggcc 234
||| |||| ||| ||||||||||||| | || |||| ||||||||||||||||||||
Sbjct: 14720777 ctgaggaaaatgtactttgccaagaagtataataaga---gcctaaagaagatgcaggcc 14720721
Query: 235 aacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacccaag 294
||||| | ||||| ||||||| || | || | | ||||||||| | |||||||||||
Sbjct: 14720720 aacaatgtcaaggtcatgagtacatgagccaaggttatcaaggcccccataaaacccaag 14720661
Query: 295 gaggtcaagcctaacatcccaaagggtggcagccgcaagct 335
| ||||||||| || ||| ||||| |||| |||| ||||||
Sbjct: 14720660 ggggtcaagcccaagatctcaaagagtggtagccccaagct 14720620
>gb|GL894914.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3531
Length = 31845
Score = 109 bits (55), Expect = 2e-21
Identities = 95/107 (88%), Gaps = 1/107 (0%)
Strand = Plus / Minus
Query: 354 tgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcaggttctg 413
|||||||||||| |||||||||| ||||||||| | || |||||||| |||||| | ||
Sbjct: 29505 tgctcaccccaagcttgggaaacatgctcgtgcccatattgccaagggtctcaggctgtg 29446
Query: 414 ccggccaaagtcccaggccaaggctcagtccaaggccaaggccacag 460
||| |||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 29445 ccgcccaaagtcccaggccaaggctcagaccaagg-caaggccacag 29400
>Sscrofa_Chr10
|| Length = 79102373
Score = 93.7 bits (47), Expect = 1e-16
Identities = 157/193 (81%), Gaps = 8/193 (4%)
Strand = Plus / Minus
Query: 231 ggccaacaacgccaaggccatgagtgcacgtgctgaagctatcaaggctcttgtaaaacc 290
|||||||||| | ||||||||||||||| ||||||| |||| ||||||| |||||| |
Sbjct: 58986831 ggccaacaacactaaggccatgagtgcatgtgctgagactattaaggctcctgtaaaggc 58986772
Query: 291 caaggaggtcaagcctaacatcccaaagggtggcagccgcaagctcagtcgacttgcgta 350
||||||||||||| | || || |||||||||||||| ||||| || ||| ||
Sbjct: 58986771 caaggaggtcaagtccaagattccaaagggtggcag----gtgctcaatc----tgccta 58986720
Query: 351 cattgctcaccccaaacttgggaaacgtgctcgtgctcgcatcgccaagggcctcaggtt 410
| |||||||||||| ||||||||| |||||| ||||| ||| ||||||| |||||| |
Sbjct: 58986719 tactgctcaccccaagcttgggaaatgtgctcatgctcatatcaccaagggtctcaggct 58986660
Query: 411 ctgccggccaaag 423
||||| |||||||
Sbjct: 58986659 ctgccagccaaag 58986647
Score = 65.9 bits (33), Expect = 3e-08
Identities = 70/81 (86%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 121 aagaaaccccgatcacaacgatatgaatctctt-aagggggtggaccccaagttcctgcg 179
||||||| | ||||||||||||||||||| ||| || ||| |||||||||||||| | |
Sbjct: 58987212 aagaaactctgatcacaacgatatgaatccctttaatgggatggaccccaagttcttaag 58987153
Query: 180 gaatatgcgctttgccaagaa 200
||| |||| ||||||||||||
Sbjct: 58987152 gaacatgcactttgccaagaa 58987132
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,678,556
Number of extensions: 4142
Number of successful extensions: 4142
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4120
Number of HSP's successfully gapped: 43
Length of query: 680
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 659
Effective length of database: 2,808,413,156
Effective search space: 1850744269804
Effective search space used: 1850744269804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)