Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001367
(1711 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 162 1e-39
Alignment gi|XP_002683721.1| PREDICTED: hypothetical protein [Bos taurus]. 82 2e-15
Alignment gi|XP_002702746.1| PREDICTED: hypothetical protein [Bos taurus]. 82 2e-15
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 70 4e-12
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 65 2e-10
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 58 2e-08
Alignment gi|NP_001074373.1| hypothetical protein LOC509513 [Bos taurus]. 57 4e-08
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 55 2e-07
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 55 2e-07
Alignment gi|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus]. 51 4e-06
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 162 bits (409), Expect = 1e-39
Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 10/330 (3%)
Frame = +2
Query: 599 CQASDFSPKQ-ISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 775
C F P +S+ W ++G V V P S Y + S LT+ S
Sbjct: 170 CLVQGFFPSAPLSVTWNQNGDSV--SVRNFPAVLAGS---LYTMSSQLTLPASLCPKGQS 224
Query: 776 FTCQVEHKGLNYE--------KNASSLCTSNPNSPITVFAIAPSFAGIFLTKSAKLSCLV 931
TCQV+H + +++SS C PN ++ P+ + L +A L+C +
Sbjct: 225 VTCQVQHLSKASKTVAVPCIIQDSSSCCV--PNCEPSLSVQPPALEDLLLGSNASLTCTL 282
Query: 932 TGLVTRESLNISWTRQDGEVLKTSIVFSEIYAN-GTFGARGEASVCVEDWESGDRFTCTV 1108
+GL + E + +W G KT++ S + G + C + W SG F+C+V
Sbjct: 283 SGLKSAEGASFTWNPTGG---KTAVQGSPKRDSCGCYSVSSVLPGCADPWNSGQTFSCSV 339
Query: 1109 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1288
TH + S L ++ K G P V++LPP EEL+L E ++TCLV+GFSP +V V+W
Sbjct: 340 THPESKSSLTATIKKDLGNT-FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKEVLVRW 398
Query: 1289 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHT 1468
LQ + + +KY+T ++ V SVL V A+ W G+T++C+VGHEALP
Sbjct: 399 LQGNQELPREKYLT-WGPLPEAGQSVTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLA 457
Query: 1469 VTERTLGQSTG*PTLYNVSLGLSDTASTCY 1558
T++T+ + G PT NVS+ +S+ CY
Sbjct: 458 FTQKTIDRLAGKPTHVNVSVVMSEVDGVCY 487
Score = 124 bits (311), Expect = 3e-28
Identities = 115/404 (28%), Positives = 178/404 (44%), Gaps = 24/404 (5%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYDD----SGDYYAMDLWGPG 169
Y ++K R I++D S++ L ++SV TEDTA YYC + D S + +D WG G
Sbjct: 78 YNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCACSSERNYIDAWGQG 137
Query: 170 XXXXXXXXXXXAPNLFPLVSCVSPPSDESLVALGCLARDFLPSS-VTFSWNYKNSSKVSS 346
+P++FPL + P+ + V +GCL + F PS+ ++ +WN +N VS
Sbjct: 138 LLVTVSSESETSPSIFPLSLGNNDPAGQ--VVIGCLVQGFFPSAPLSVTWN-QNGDSVS- 193
Query: 347 QNIQDFPSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPS-GTKSVSI-------S 502
+++FP+VL G Y SS++ LP+ P+ + C+VQH S +K+V++ S
Sbjct: 194 --VRNFPAVLAGSLYTMSSQLTLPASLCPKGQS--VTCQVQHLSKASKTVAVPCIIQDSS 249
Query: 503 GPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDF-SPKQISMAWF-RDGKRVVSGV 676
V P L++ P E + L C S S + S W GK V G
Sbjct: 250 SCCVPNCEPSLSVQPPALEDL--LLGSNASLTCTLSGLKSAEGASFTWNPTGGKTAVQG- 306
Query: 677 STGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSP 856
+ S Y + S+L W S F+C V H E +S T +
Sbjct: 307 -----SPKRDSCGCYSVSSVLPGCADPWNSGQTFSCSVTHP----ESKSSLTATIKKDLG 357
Query: 857 IT----VFAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS-IVFSEI 1021
T V + P + L + L+CLV G +E L + W + + E+ + + + +
Sbjct: 358 NTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKEVL-VRWLQGNQELPREKYLTWGPL 416
Query: 1022 YANG----TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1141
G TF V E W+ GD F+C V H LP Q
Sbjct: 417 PEAGQSVTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLAFTQ 460
Score = 59.3 bits (142), Expect = 1e-08
Identities = 82/340 (24%), Positives = 124/340 (36%), Gaps = 30/340 (8%)
Frame = +2
Query: 545 VPTRESFSST--PQRTSKLICQASDFSPKQISMAWFRD--GKRV-VSGVSTGPVETLQSS 709
V RES S P +T L C AS FS + W R GK + TG T +
Sbjct: 21 VQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKALECLACITGGGNTAYNP 80
Query: 710 PVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASS---LCTSNPN--------SP 856
+ RL+ ++S+ +S S+ + E Y S+ C+S N
Sbjct: 81 ALKSRLNITKDKSKSQ-VSLSLSSVTTEDTATYYCAKYSTDDCACSSERNYIDAWGQGLL 139
Query: 857 ITVFAIAPSFAGIFLTK--------SAKLSCLVTGLVTRESLNISWTRQDGEVLKTSIVF 1012
+TV + + + IF + CLV G L+++W + V + F
Sbjct: 140 VTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSVTWNQNGDSVSVRN--F 197
Query: 1013 SEIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPS-----PLKQSVSKPRGIARHM 1177
+ A + + ++ G TC V H S P S +
Sbjct: 198 PAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPCIIQDSSSCCVPNCE 257
Query: 1178 PSVYVLPPAPEELSLQEWASVTCLVKGFSPAD-VFVQWLQKGEPVSADKYVTSXXXXXXX 1354
PS+ V PPA E+L L AS+TC + G A+ W G +
Sbjct: 258 PSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTAVQ--------GSPK 309
Query: 1355 XXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVT 1474
Y V SVL A W+ G+T++C V H ++T
Sbjct: 310 RDSCGCYSVSSVLPGCADPWNSGQTFSCSVTHPESKSSLT 349
>ref|XP_002683721.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 97
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/55 (74%), Positives = 42/55 (76%)
Frame = -2
Query: 1329 VTYLSADTGSPFCSHCTNTSAGEKPFTRQVTEAHSCRLSSSGAGGSTYTDGMCLA 1165
VTYL TGSP CSHCTNTSAG KPFTRQVTEA S RLS S GGS YTDG +A
Sbjct: 19 VTYLLLVTGSPLCSHCTNTSAGAKPFTRQVTEADSRRLSCSRVGGSRYTDGGFMA 73
>ref|XP_002702746.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 97
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/55 (74%), Positives = 42/55 (76%)
Frame = -2
Query: 1329 VTYLSADTGSPFCSHCTNTSAGEKPFTRQVTEAHSCRLSSSGAGGSTYTDGMCLA 1165
VTYL TGSP CSHCTNTSAG KPFTRQVTEA S RLS S GGS YTDG +A
Sbjct: 19 VTYLLLVTGSPLCSHCTNTSAGAKPFTRQVTEADSRRLSCSRVGGSRYTDGGFMA 73
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 70.5 bits (171), Expect = 4e-12
Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 1/137 (0%)
Frame = +2
Query: 431 PQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQAS 610
P+ P A+ SGTK ++ P + PP + +F P+ E S+ T+ L+C S
Sbjct: 136 PEGPSAWFT----FGSGTK---VTIPDQPKFPPSVTLFPPSTEELSTY---TATLVCLIS 185
Query: 611 DFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQV 790
DF P +++AW DG V GV T + Q S Y S LT+T SEW +S ++C+V
Sbjct: 186 DFYPGNVTVAWKADGSPVTRGVVTS--QASQQSSSKYVASSYLTLTGSEWKPKSSYSCEV 243
Query: 791 EHKGLNYEKNAS-SLCT 838
H+G K S C+
Sbjct: 244 THEGSTVTKTVKPSACS 260
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/99 (35%), Positives = 47/99 (47%)
Frame = +2
Query: 1178 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1357
PSV + PP+ EELS A++ CL+ F P +V V W G PV+ VTS
Sbjct: 161 PSVTLFPPSTEELSTYT-ATLVCLISDFYPGNVTVAWKADGSPVTRG-VVTS----QASQ 214
Query: 1358 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVT 1474
Y S LT++ +W +Y+C V HE T T
Sbjct: 215 QSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKT 253
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 64.7 bits (156), Expect = 2e-10
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +2
Query: 479 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 658
GT+ + P + PP + +F P++E S+ + L+C SDF P +++AW DG
Sbjct: 124 GTRVTVLGQP---KSPPSVTLFPPSKEELSANK---ATLVCLISDFYPGSVTVAWKADGS 177
Query: 659 RVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNA-SSLC 835
+ V T + S Y S L++T+S+W S+ ++C+V H+G K +S C
Sbjct: 178 TITRNVKT--TRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKTSAC 235
Query: 836 T 838
+
Sbjct: 236 S 236
Score = 55.1 bits (131), Expect = 2e-07
Identities = 52/170 (30%), Positives = 72/170 (42%), Gaps = 5/170 (2%)
Frame = +2
Query: 5 ADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYDDSGDYYAMDLWGPGXXXXX 184
A + RF+ S+ S TA L + + ED A YYC + D SG DL+G G
Sbjct: 73 ASGIPDRFSGSK--SDTTATLTIRGAQAEDEADYYC-QSADISGPVSLCDLFGGGTRVTV 129
Query: 185 XXXXXXAPNLFPLVSCVSPPSDESLVA----LGCLARDFLPSSVTFSWNYKNSSKVSSQN 352
P++ + PPS E L A L CL DF P SVT +W K ++N
Sbjct: 130 LGQPKSPPSV-----TLFPPSKEELSANKATLVCLISDFYPGSVTVAW--KADGSTITRN 182
Query: 353 IQDF-PSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSI 499
++ S KY ASS + L + CEV H T + ++
Sbjct: 183 VKTTRASKQSNSKYAASSYLSL--TDSDWKSKGSYSCEVTHEGSTVTKTV 230
Score = 54.3 bits (129), Expect = 3e-07
Identities = 33/108 (30%), Positives = 49/108 (45%)
Frame = +2
Query: 1160 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1339
G + PSV + PP+ EELS + A++ CL+ F P V V W G ++ + T
Sbjct: 131 GQPKSPPSVTLFPPSKEELSANK-ATLVCLISDFYPGSVTVAWKADGSTITRNVKTTRAS 189
Query: 1340 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERT 1483
Y S L+++ DW +Y+C V HE T T +T
Sbjct: 190 KQSNS-----KYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKT 232
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 58.2 bits (139), Expect = 2e-08
Identities = 29/100 (29%), Positives = 49/100 (49%)
Frame = +2
Query: 518 EQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVET 697
+ PP + +F P+ E + + L+C SDF P +++ W DG + V T
Sbjct: 133 KSPPSVTLFPPSTEELNGNK---ATLVCLISDFYPGSVTVVWKADGSTITRNVET--TRA 187
Query: 698 LQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK 817
+ S Y S L++T S+W S+ ++C+V H+G K
Sbjct: 188 SKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTK 227
Score = 52.0 bits (123), Expect = 2e-06
Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 6/168 (3%)
Frame = +2
Query: 14 VKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYDDSGDYYA-MDLWGPGXXXXXXX 190
V RF+ S+ S NTA L +NS++ ED A Y+C +GDY ++G G
Sbjct: 78 VPDRFSGSK--SGNTATLTINSLQAEDEADYFCA-----AGDYSVNTAVFGGGTTLTVLG 130
Query: 191 XXXXAPNLFPLVSCVSPPSDESL----VALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQ 358
P++ + PPS E L L CL DF P SVT W K ++N++
Sbjct: 131 QPKSPPSV-----TLFPPSTEELNGNKATLVCLISDFYPGSVTVVW--KADGSTITRNVE 183
Query: 359 DF-PSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSI 499
S KY ASS + L S + CEV H T + ++
Sbjct: 184 TTRASKQSNSKYAASSYLSL--TSSDWKSKGSYSCEVTHEGSTVTKTV 229
Score = 50.8 bits (120), Expect = 4e-06
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = +2
Query: 1160 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1339
G + PSV + PP+ EEL+ + A++ CL+ F P V V W G ++ + T
Sbjct: 130 GQPKSPPSVTLFPPSTEELNGNK-ATLVCLISDFYPGSVTVVWKADGSTITRNVETTRAS 188
Query: 1340 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVT 1474
Y S L++++ DW +Y+C V HE T T
Sbjct: 189 KQSNS-----KYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKT 228
>ref|NP_001074373.1| hypothetical protein LOC509513 [Bos taurus].
Length = 312
Score = 57.4 bits (137), Expect = 4e-08
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Frame = +2
Query: 479 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 658
GTK ++I + PP + +F P+ S T + T L+C A+ F P + + W+ + K
Sbjct: 128 GTK-LTIVDDLSRVHPPKVAVFEPSEAEISRTQKAT--LVCLATGFYPDHVELTWWVNRK 184
Query: 659 RVVSGVSTGPVETLQSSPV----TYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 805
+V +GVST P E+ + P Y L S L VT + W + ++ F CQV+ GL
Sbjct: 185 QVTTGVSTDP-ESYKEDPARDDSRYCLSSRLRVTAAFWHNPRNHFRCQVQFHGL 237
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 55.1 bits (131), Expect = 2e-07
Identities = 31/93 (33%), Positives = 45/93 (48%)
Frame = +2
Query: 527 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 706
P + +F P+ E + T ++C +DF PK I++ W DG S S
Sbjct: 133 PSVFLFKPSDEQLKTG---TVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDS 189
Query: 707 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGL 805
TY L S+LT+ SE+ S +TC+V HK L
Sbjct: 190 KKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
Score = 53.9 bits (128), Expect = 4e-07
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = +2
Query: 1178 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1357
PSV++ P+ E+L SV CLV F P D+ V+W G S+ + S
Sbjct: 133 PSVFLFKPSDEQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 1358 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTE 1477
+Y + S+LT+ + ++ + YTC V H++L T+ +
Sbjct: 192 S---TYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVK 228
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 55.1 bits (131), Expect = 2e-07
Identities = 31/93 (33%), Positives = 45/93 (48%)
Frame = +2
Query: 527 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 706
P + +F P+ E + T ++C +DF PK I++ W DG S S
Sbjct: 133 PSVFLFKPSDEQLKTG---TVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDS 189
Query: 707 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGL 805
TY L S+LT+ SE+ S +TC+V HK L
Sbjct: 190 KKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
Score = 53.9 bits (128), Expect = 4e-07
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = +2
Query: 1178 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1357
PSV++ P+ E+L SV CLV F P D+ V+W G S+ + S
Sbjct: 133 PSVFLFKPSDEQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 1358 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTE 1477
+Y + S+LT+ + ++ + YTC V H++L T+ +
Sbjct: 192 S---TYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVK 228
>ref|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus].
Length = 386
Score = 50.8 bits (120), Expect = 4e-06
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 4/196 (2%)
Frame = +2
Query: 569 STPQRTSKLICQASDFSPKQISMAWFRDGKRV-VSGVSTGPVETLQSSPVTYRLHSMLTV 745
+TP++T C + FSP+ IS+ WF++G + S S P E VTY + S +
Sbjct: 158 ATPEQTVSFTCTSHGFSPRNISLKWFKNGNELSASQTSVDPEE----DGVTYSITSTTEL 213
Query: 746 TESEWLSQSVFTCQVEHKGLNYEK--NASSLCTSNPNSPITVFAIAPSFAGIFLTKSAKL 919
+ S +C+V H L + ++ + P T+ AG + +
Sbjct: 214 LLAPGDVHSQVSCEVAHVTLQGSRPLRGTASLSKTIRVPPTLEVTQQPMAG---NQVNII 270
Query: 920 SCLVTGLVTRESLNISWTRQDGEVLKTSIVFSEI-YANGTFGARGEASVCVEDWESGDRF 1096
+CLV ++ L ++W ++G + +T + I +GTF V F
Sbjct: 271 TCLVNKFYPQQ-LQLTWL-ENGNMSRTEAASTLIENKDGTFNYMSWLLVISSAHRKAVVF 328
Query: 1097 TCTVTHTDLPSPLKQS 1144
TC V H P+ K S
Sbjct: 329 TCQVEHDGQPAVTKNS 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,400,259
Number of extensions: 1539429
Number of successful extensions: 7426
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7314
Number of HSP's successfully gapped: 19
Length of query: 570
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 462
Effective length of database: 14,107,870
Effective search space: 6517835940
Effective search space used: 6517835940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001367
(1711 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534372.2| PREDICTED: similar to Tyrosine-protein phosphat... 72 1e-12
Alignment gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi... 72 2e-12
Alignment gi|XP_848500.1| PREDICTED: similar to Ig heavy chain V-III regi... 72 2e-12
Alignment gi|XP_849242.1| PREDICTED: similar to Ig heavy chain V-III regi... 71 3e-12
Alignment gi|XP_848979.1| PREDICTED: similar to Ig heavy chain V-III regi... 71 4e-12
Alignment gi|XP_848837.1| PREDICTED: similar to Ig heavy chain V-III regi... 70 5e-12
Alignment gi|XP_848321.1| PREDICTED: similar to Ig heavy chain V-III regi... 70 5e-12
Alignment gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi... 70 6e-12
Alignment gi|XP_848691.1| PREDICTED: similar to Ig heavy chain V-III regi... 70 6e-12
Alignment gi|XP_851420.1| PREDICTED: similar to protein tyrosine phosphat... 70 8e-12
>ref|XP_534372.2| PREDICTED: similar to Tyrosine-protein phosphatase non-receptor
type substrate 1 precursor (SHP substrate-1) (SHPS-1)
(Inhibitory receptor SHPS-1) (Signal-regulatory protein
alpha-1) (Sirp-alpha-1) (Sirp-alpha-2) (Sirp-alpha-3)
(MyD-1 antigen) (Brain Ig-like ... [Canis familiaris].
Length = 424
Score = 72.4 bits (176), Expect = 1e-12
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 14/274 (5%)
Frame = +2
Query: 23 RFTISRDNSQ--NTAY-LQMNSVRTEDTARYYCGRDYDDSGDYYAMDLWGPGXXXXXXXX 193
R T + D+++ NT + +++++ T+DT YYC + + D GPG
Sbjct: 86 RVTNASDSTKRNNTDFSIRISNTTTKDTGTYYCVKFQKGNPDVELKS--GPG-----TLV 138
Query: 194 XXXAPNLFPLVS-CVSPPSDESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPS 370
A P+VS + + + V+ C + F P S+T W +KN +++++ +P
Sbjct: 139 IVSAKPSPPVVSGPTARATPQQTVSFTCKSHGFSPRSITLRW-FKNGNELTASQTTVYPD 197
Query: 371 VLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPS--------GTKSVSISGPVVEEQP 526
++S+ L V P D + ++CEV H + GT ++S + V P
Sbjct: 198 EDNASYSISSTTKL---VLAPGDVRSQVICEVAHVTLQGGPPLRGTANLSETLRV----P 250
Query: 527 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVET--L 700
P L + S T + +ICQ +F P+++ + W +G VS T V + L
Sbjct: 251 PTLEV------SQHPTARDQIYVICQVEEFYPQRLQLTWLENGN--VSRTETPSVASNLL 302
Query: 701 QSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKG 802
++ T+ S L V S VFTCQV+H G
Sbjct: 303 ENKDGTFNWMSWLLVNSSTHREDVVFTCQVQHDG 336
>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 162
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYC RD
Sbjct: 91 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCARD 130
>ref|XP_848500.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 376
Score = 71.6 bits (174), Expect = 2e-12
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYC RD
Sbjct: 334 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCARD 373
Score = 71.2 bits (173), Expect = 3e-12
Identities = 31/42 (73%), Positives = 38/42 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYD 127
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYCG+ ++
Sbjct: 78 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCGKGHN 119
Score = 66.6 bits (161), Expect = 7e-11
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYDDSG 136
YAD+VKG+FTISRDN++NT YLQMNS+R +D A YYC R D G
Sbjct: 210 YADAVKGQFTISRDNARNTLYLQMNSLRDKDMAVYYCARSSADGG 254
>ref|XP_849242.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 121
Score = 71.2 bits (173), Expect = 3e-12
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYC +D
Sbjct: 79 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAMYYCAKD 118
>ref|XP_848979.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 168
Score = 70.9 bits (172), Expect = 4e-12
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYDDSGDYYAMDL 157
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYC +D + Y +L
Sbjct: 95 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCAKDTESVFMYSVSNL 146
>ref|XP_848837.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 180
Score = 70.5 bits (171), Expect = 5e-12
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYC +D
Sbjct: 79 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCAKD 118
>ref|XP_848321.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 296
Score = 70.5 bits (171), Expect = 5e-12
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRFTISRDN++NT YLQMNS+R EDTA YYC +D
Sbjct: 225 YADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCAKD 264
>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 142
Score = 70.1 bits (170), Expect = 6e-12
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRFTISRDN++NT YLQMNS+R+EDTA YYC +D
Sbjct: 92 YADAVKGRFTISRDNARNTLYLQMNSLRSEDTAVYYCPKD 131
>ref|XP_848691.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 194
Score = 70.1 bits (170), Expect = 6e-12
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YAD+VKGRF ISRDN++NT YLQMNS+R EDTA YYC RD
Sbjct: 76 YADAVKGRFIISRDNAKNTLYLQMNSLRAEDTAMYYCARD 115
>ref|XP_851420.1| PREDICTED: similar to protein tyrosine phosphatase, non-receptor
type substrate 1 precursor, partial [Canis familiaris].
Length = 635
Score = 69.7 bits (169), Expect = 8e-12
Identities = 67/262 (25%), Positives = 108/262 (41%), Gaps = 16/262 (6%)
Frame = +2
Query: 65 LQMNSVRTEDTARYYCGRDYDDSGDYYAMDLWGPGXXXXXXXXXXXAPNLFPLVSCVSPP 244
+++++ DT YYC + + D GPG P VS P
Sbjct: 148 IRISNTTPADTGTYYCVKFQKGNPDVELKS--GPGTLVTVSAK--------PSTPVVSGP 197
Query: 245 S----DESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVL 412
+ + V+ C + F P S+T W +KN +++++ +P ++S+ L
Sbjct: 198 TARVMPQQTVSFTCKSHGFSPRSITLRW-FKNGNELTASQTTVYPEEDNASYNISSTTKL 256
Query: 413 LPSVSIPQDPEAFLVCEVQHPS--------GTKSVSISGPVVEEQPPVLNIFVPTRESFS 568
V P D + ++CEV H + GT S+S V PP L + S
Sbjct: 257 ---VLAPGDVRSQVICEVAHVTLQGDPPLRGTASLS----EVLRVPPTLEV--------S 301
Query: 569 STPQRTSKL--ICQASDFSPKQISMAWFRDGKRVVSGVSTGPVET--LQSSPVTYRLHSM 736
P ++ ICQ +F P+++ + W +G VS T V + L++ T+ S
Sbjct: 302 QHPMARDQIYVICQVEEFYPQRLQLTWLENGN--VSRTETPSVASNLLENKDGTFNWMSW 359
Query: 737 LTVTESEWLSQSVFTCQVEHKG 802
L V S VFTCQV+H G
Sbjct: 360 LLVNSSTHREDVVFTCQVQHDG 381
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,748,791
Number of extensions: 1575563
Number of successful extensions: 8325
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 8035
Number of HSP's successfully gapped: 210
Length of query: 570
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 462
Effective length of database: 15,274,216
Effective search space: 7056687792
Effective search space used: 7056687792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001367
(1711 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 72 2e-12
Alignment gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-... 72 2e-12
Alignment gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-... 71 3e-12
Alignment gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-... 71 3e-12
Alignment gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-... 70 8e-12
Alignment gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941... 69 1e-11
Alignment gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-... 69 1e-11
Alignment gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-... 69 1e-11
Alignment gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917... 69 1e-11
Alignment gi|XP_003403514.1| PREDICTED: ig heavy chain V-I region V35-lik... 67 5e-11
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 72.0 bits (175), Expect = 2e-12
Identities = 34/57 (59%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD-YDDSGDYYAMDLWGPG 169
YADSVKGRFTISRDNS+N+ YLQMNS+R EDTA YYC +D +++ G+ + + + G
Sbjct: 79 YADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYCAKDTHENPGESWQGEGYSSG 135
Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/35 (68%), Positives = 31/35 (88%)
Frame = +2
Query: 5 ADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYY 109
A SVKGRFTISRD+S+NT Y+QMN+++T+ TA YY
Sbjct: 172 AASVKGRFTISRDDSKNTLYMQMNTLKTKYTAIYY 206
>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 148
Score = 71.6 bits (174), Expect = 2e-12
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTIS DNS+NT YLQMNS+R EDTA YYC RD
Sbjct: 79 YADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYCARD 118
>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 186
Score = 71.2 bits (173), Expect = 3e-12
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTISRDN++N+ YLQMNS+R EDTA YYC RD
Sbjct: 79 YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCARD 118
>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 173
Score = 71.2 bits (173), Expect = 3e-12
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTISRDNS+NT YLQMNS+R DTA YYC RD
Sbjct: 79 YADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYCARD 118
>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 231
Score = 69.7 bits (169), Expect = 8e-12
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTISRDNS+NT YLQM+S+R EDTA YYC +D
Sbjct: 79 YADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCVKD 118
>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
Length = 297
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTISRDN++N+ YLQMNS+R ED A YYC RD
Sbjct: 78 YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTISRDN++N+ YLQMNS+R ED A YYC RD
Sbjct: 78 YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/40 (77%), Positives = 35/40 (87%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
YADSVKGRFTISRDN++N+ YLQMNS+R ED A YYC RD
Sbjct: 78 YADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCARD 117
>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
Length = 295
Score = 68.9 bits (167), Expect = 1e-11
Identities = 31/39 (79%), Positives = 35/39 (89%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGR 118
YADSVKGRFTISRDN++N+ YLQMNS+R EDTA YYC R
Sbjct: 99 YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR 137
>ref|XP_003403514.1| PREDICTED: ig heavy chain V-I region V35-like [Homo sapiens].
Length = 123
Score = 67.0 bits (162), Expect = 5e-11
Identities = 30/37 (81%), Positives = 34/37 (91%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYC 112
YADSVKGRFTISRDN++N+ YLQMNS+R EDTA YYC
Sbjct: 78 YADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYC 114
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,454,275
Number of extensions: 1532758
Number of successful extensions: 7302
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 7171
Number of HSP's successfully gapped: 21
Length of query: 570
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 462
Effective length of database: 14,737,052
Effective search space: 6808518024
Effective search space used: 6808518024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001367
(1711 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 147 2e-35
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 147 2e-35
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 141 2e-33
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 56 1e-07
Alignment gi|NP_001166930.1| signal-regulatory protein beta 1-like [Mus m... 55 2e-07
Alignment gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361... 55 2e-07
Alignment gi|XP_923633.3| PREDICTED: tyrosine-protein phosphatase non-rec... 55 2e-07
Alignment gi|NP_808321.1| hypothetical protein LOC228592 [Mus musculus]. 54 5e-07
Alignment gi|NP_001166931.1| signal-regulatory protein beta 1B [Mus muscu... 52 1e-06
Alignment gi|NP_001171117.1| tyrosine-protein phosphatase non-receptor ty... 52 1e-06
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 147 bits (372), Expect = 2e-35
Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 10/330 (3%)
Frame = +2
Query: 599 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 775
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 36 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGRYTMSSQLTLPAVECPEGES 91
Query: 776 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPSFA-------GIFLTKSAKLSCLVT 934
C V+H ++ + P PIT+ + PS + + L A ++C +
Sbjct: 92 VKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLN 151
Query: 935 GLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTV 1108
GL E +W G+ V K ++ S G + C E W SG F CTV
Sbjct: 152 GLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKCTV 207
Query: 1109 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1288
TH + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V+W
Sbjct: 208 THPE-SGTLTGTIAKVT-VNTFPPQVHLLPPPSEELALNELLSLTCLVRAFNPKEVLVRW 265
Query: 1289 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHT 1468
L E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEALP
Sbjct: 266 LHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEALPMN 324
Query: 1469 VTERTLGQSTG*PTLYNVSLGLSDTASTCY 1558
T++T+ + +G PT +VS+ +S+ CY
Sbjct: 325 FTQKTIDRLSGKPTNVSVSVIMSEGDGICY 354
Score = 83.2 bits (204), Expect = 6e-16
Identities = 85/331 (25%), Positives = 136/331 (41%), Gaps = 19/331 (5%)
Frame = +2
Query: 206 PNLFPLVSCVSPPSDESLVALGCLARDFLPS-SVTFSWNYKNSSKVSSQNIQDFPSVLRG 382
P ++PL + P V +GCL D+ PS ++ +W K+ +++ N P++ G
Sbjct: 16 PTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWG-KSGKDITTVNFP--PALASG 70
Query: 383 GKYLASSRVLLPSVSIPQDPEAFLVCEVQH---PSGTKSVSISGPVVEEQPPVLNIFVPT 553
G+Y SS++ LP+V P+ + C VQH P V+ SGP PP I +P+
Sbjct: 71 GRYTMSSQLTLPAVECPEGES--VKCSVQHDSNPVQELDVNCSGPT--PPPP---ITIPS 123
Query: 554 RESFSSTPQRTSKLICQASDFS----------PKQISMAWFRDGKRVVSGVSTGPVETLQ 703
+ S + + + SD S P+ W +G + +Q
Sbjct: 124 CQPSLSLQRPALEDLLLGSDASITCTLNGLRNPEGAVFTW-----EPSTGKDAVQKKAVQ 178
Query: 704 SSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPS 883
+S Y + S+L W S + F C V H + T N P V + P
Sbjct: 179 NSCGCYSVSSVLPGCAERWNSGASFKCTVTHPESGTLTGTIAKVTVN-TFPPQVHLLPPP 237
Query: 884 FAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS-IVFSEIYANG----TFGAR 1048
+ L + L+CLV +E L + W + E+ S +VF + G T+
Sbjct: 238 SEELALNELLSLTCLVRAFNPKEVL-VRWLHGNEELSPESYLVFEPLKEPGEGATTYLVT 296
Query: 1049 GEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1141
V E W+ GD+++C V H LP Q
Sbjct: 297 SVLRVSAETWKQGDQYSCMVGHEALPMNFTQ 327
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 147 bits (372), Expect = 2e-35
Identities = 101/330 (30%), Positives = 158/330 (47%), Gaps = 10/330 (3%)
Frame = +2
Query: 599 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 775
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 95 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGRYTMSSQLTLPAVECPEGES 150
Query: 776 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPSFA-------GIFLTKSAKLSCLVT 934
C V+H ++ + P PIT+ + PS + + L A ++C +
Sbjct: 151 VKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLN 210
Query: 935 GLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTV 1108
GL E +W G+ V K ++ S G + C E W SG F CTV
Sbjct: 211 GLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKCTV 266
Query: 1109 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1288
TH + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V+W
Sbjct: 267 THPE-SGTLTGTIAKVT-VNTFPPQVHLLPPPSEELALNELLSLTCLVRAFNPKEVLVRW 324
Query: 1289 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHT 1468
L E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEALP
Sbjct: 325 LHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEALPMN 383
Query: 1469 VTERTLGQSTG*PTLYNVSLGLSDTASTCY 1558
T++T+ + +G PT +VS+ +S+ CY
Sbjct: 384 FTQKTIDRLSGKPTNVSVSVIMSEGDGICY 413
Score = 83.2 bits (204), Expect = 6e-16
Identities = 85/331 (25%), Positives = 136/331 (41%), Gaps = 19/331 (5%)
Frame = +2
Query: 206 PNLFPLVSCVSPPSDESLVALGCLARDFLPS-SVTFSWNYKNSSKVSSQNIQDFPSVLRG 382
P ++PL + P V +GCL D+ PS ++ +W K+ +++ N P++ G
Sbjct: 75 PTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWG-KSGKDITTVNFP--PALASG 129
Query: 383 GKYLASSRVLLPSVSIPQDPEAFLVCEVQH---PSGTKSVSISGPVVEEQPPVLNIFVPT 553
G+Y SS++ LP+V P+ + C VQH P V+ SGP PP I +P+
Sbjct: 130 GRYTMSSQLTLPAVECPEGES--VKCSVQHDSNPVQELDVNCSGPT--PPPP---ITIPS 182
Query: 554 RESFSSTPQRTSKLICQASDFS----------PKQISMAWFRDGKRVVSGVSTGPVETLQ 703
+ S + + + SD S P+ W +G + +Q
Sbjct: 183 CQPSLSLQRPALEDLLLGSDASITCTLNGLRNPEGAVFTW-----EPSTGKDAVQKKAVQ 237
Query: 704 SSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPS 883
+S Y + S+L W S + F C V H + T N P V + P
Sbjct: 238 NSCGCYSVSSVLPGCAERWNSGASFKCTVTHPESGTLTGTIAKVTVN-TFPPQVHLLPPP 296
Query: 884 FAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS-IVFSEIYANG----TFGAR 1048
+ L + L+CLV +E L + W + E+ S +VF + G T+
Sbjct: 297 SEELALNELLSLTCLVRAFNPKEVL-VRWLHGNEELSPESYLVFEPLKEPGEGATTYLVT 355
Query: 1049 GEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 1141
V E W+ GD+++C V H LP Q
Sbjct: 356 SVLRVSAETWKQGDQYSCMVGHEALPMNFTQ 386
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 141 bits (355), Expect = 2e-33
Identities = 102/332 (30%), Positives = 158/332 (47%), Gaps = 12/332 (3%)
Frame = +2
Query: 599 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 775
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 31 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGGYTMSSQLTLPAVECPEGES 86
Query: 776 FTCQVEHKGLNYEKNASSLCTSNPNSPIT---------VFAIAPSFAGIFLTKSAKLSCL 928
C V+H N + + C S P P T + P+ + L A ++C
Sbjct: 87 VKCSVQHDS-NAVQELNVKC-SGPPPPTTPPPPSCQPSLSLQRPALEDLLLGSDASITCT 144
Query: 929 VTGLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTC 1102
+ GL E +W G+ V K ++ S G + C E W SG F C
Sbjct: 145 LNGLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKC 200
Query: 1103 TVTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFV 1282
TVTH + + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V
Sbjct: 201 TVTHPESDT-LTGTIAKIT-VNTFPPQVHLLPPPSEELALNELVSLTCLVRAFNPKEVLV 258
Query: 1283 QWLQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALP 1462
+WL E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEALP
Sbjct: 259 RWLHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAEIWKQGDQYSCMVGHEALP 317
Query: 1463 HTVTERTLGQSTG*PTLYNVSLGLSDTASTCY 1558
T++T+ + +G PT +VS+ +S+ CY
Sbjct: 318 MNFTQKTIDRLSGKPTNVSVSVIMSEGDGICY 349
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 55.8 bits (133), Expect = 1e-07
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Frame = +2
Query: 428 IPQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQA 607
+P P+ + V GT+ + P + P++ +F+P+ ++ + + L+C
Sbjct: 84 LPSKPQFWYV----FGGGTQLTILGQP---KSDPLVTLFLPSLKNLQANK---ATLVCLV 133
Query: 608 SDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVT---YRLHSMLTVTESEWLSQSVF 778
S+F P + + W DG V GV ET Q S T Y + S LT+ +W+ S +
Sbjct: 134 SEFYPGTLVVDWKVDGVPVTQGV-----ETTQPSKQTNNKYMVSSYLTLISDQWMPHSRY 188
Query: 779 TCQVEHKGLNYEKNAS 826
+C+V H+G EK+ S
Sbjct: 189 SCRVTHEGNTVEKSVS 204
>ref|NP_001166930.1| signal-regulatory protein beta 1-like [Mus musculus].
Length = 391
Score = 55.1 bits (131), Expect = 2e-07
Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 3/249 (1%)
Frame = +2
Query: 65 LQMNSVRTEDTARYYCGRDYDDSGDYYAMDLWGPGXXXXXXXXXXXAPNLFPLVSCVSPP 244
+++++V D+ YYC + + M++ G +P + + P
Sbjct: 103 IRISNVTPADSGTYYCVK-FQRGPSEPDMEIQSGGGTELSVFAKPSSPMVSGPAARAVP- 160
Query: 245 SDESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSV 424
+ VA C + F P ++T W +KN +++S P Y SS V + V
Sbjct: 161 --QQTVAFTCRSHGFFPRNLTLKW-FKNGNEISHLETSVEPEET-SVSYRVSSTVQV--V 214
Query: 425 SIPQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLI-- 598
P+D + ++CEV H + ++ + E I VP S P +I
Sbjct: 215 LEPRDVRSQIICEVDHVTLDRAPLRGIAHISEF-----IQVPPTLEISQQPTMVWNVIIV 269
Query: 599 -CQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 775
CQ F P + + W +G V P + + TY S L V S V
Sbjct: 270 TCQIQKFYPPRFQVTWLENGNISRREV---PFTLIVNKDGTYNWISCLLVNISALEENMV 326
Query: 776 FTCQVEHKG 802
TCQVEH G
Sbjct: 327 VTCQVEHDG 335
>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
Length = 411
Score = 55.1 bits (131), Expect = 2e-07
Identities = 22/40 (55%), Positives = 33/40 (82%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD 121
Y ++K R +IS+DNS++ +L+MNS++T+DTARYYC RD
Sbjct: 318 YNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCARD 357
>ref|XP_923633.3| PREDICTED: tyrosine-protein phosphatase non-receptor type substrate
1-like [Mus musculus].
Length = 254
Score = 54.7 bits (130), Expect = 2e-07
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 3/187 (1%)
Frame = +2
Query: 251 ESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSI 430
+ V C + F P ++T W +KN +++S P Y SS V + V
Sbjct: 36 QQTVTFACRSHGFFPQNLTLKW-FKNGNEISHLETSVEPEET-SVSYRVSSTVQV--VLE 91
Query: 431 PQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQ---RTSKLIC 601
P+D + ++CEV H + ++ + E I VP S P +IC
Sbjct: 92 PRDVRSQIICEVAHVTLDRAPLRGIAHISEI-----IQVPPTLEISQQPTMVWNVINVIC 146
Query: 602 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 781
Q F P+++ + W +G V P + + TY S L V S V T
Sbjct: 147 QIQQFYPQRLQVTWLENGNISRREV---PFTHIINKDGTYNWISWLMVNISALEENMVVT 203
Query: 782 CQVEHKG 802
CQVEH G
Sbjct: 204 CQVEHDG 210
>ref|NP_808321.1| hypothetical protein LOC228592 [Mus musculus].
Length = 487
Score = 53.5 bits (127), Expect = 5e-07
Identities = 87/430 (20%), Positives = 167/430 (38%), Gaps = 15/430 (3%)
Frame = +2
Query: 218 PLVSCVSPP---SDESLVALGCLARDFLPSSVTFSWNYKNSSKVSSQ----NIQDFPSVL 376
P ++ + P + S V C A F +++ +W N+ +S ++ + L
Sbjct: 35 PFITLIGPDQRTTPSSSVFFLCTAAPFRSMNLSVNWLRNNNEHPASTTHVVHVNNDSYSL 94
Query: 377 RGGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSV--SISGPVVEEQPPVLNIFVP 550
R ++ ++ QD + + CEV H + + +I+ V P L I
Sbjct: 95 RSKAWVTLTK---------QDISSQITCEVTHGDLKEPLRMTINLSQVLRVIPTLKITTE 145
Query: 551 TRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLH 730
E Q+ + L C + F P+ + + W ++G ++ + +T ++S TY L
Sbjct: 146 DPEIQDHVHQKVN-LTCHVNHFYPQNMDLIWTKNGHKIPTMELP---QTTRNSDGTYSLQ 201
Query: 731 SMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPITVFA--IAPSFAGIFLT 904
L V L+++ F C V KN+ +L T ++ +
Sbjct: 202 HTLQVDAI--LNKTDFVCWVIQDDQPPVKNSITLGAPRKIRGRTEYSHHLEGPLQRFPPG 259
Query: 905 KSAKLSCLVTGLVTRESLNISWTRQDGEVLKTSIVFSEIYANG-TFGARGEASVCVEDWE 1081
S +L + L TR+ + ++W + + L+T + +++NG T+ A V +E +
Sbjct: 260 ASIQLKYTSSALQTRQ-VTVTWLKNNHTRLQTQ---TNVFSNGETYNVTSTAIVSLESDD 315
Query: 1082 SGDRFTCTVTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPA---PEELSLQEWASVTCLV 1252
C V H L K ++ +PPA + ++ +VTC V
Sbjct: 316 ILSLVLCLVEHKSLVVFQK---------VIYLGQYLCVPPAVRVSQSSTVSSLVTVTCHV 366
Query: 1253 KGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETY 1432
+ F P +V++ WL+ + + T SY ++ + V+ +
Sbjct: 367 QRFYPQEVYLSWLEDCHVIRRIEQPT------PKRNEDGSYTLEVLQLVNTSVERSDQVL 420
Query: 1433 TCVVGHEALP 1462
TC V HE P
Sbjct: 421 TCKVEHEEHP 430
>ref|NP_001166931.1| signal-regulatory protein beta 1B [Mus musculus].
Length = 391
Score = 52.0 bits (123), Expect = 1e-06
Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 7/253 (2%)
Frame = +2
Query: 65 LQMNSVRTEDTARYYCGRDYDDSGDYYAMDLWGPGXXXXXXXXXXXAPNLFPLVSCVSPP 244
+++++V D+ YYC + S + G G P VS P
Sbjct: 103 IRISNVTPADSGTYYCVKFQRGSSESDREIQSGGGTELSVLAK--------PSSPMVSGP 154
Query: 245 SDESL----VALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVL 412
+ ++ V C + F P ++T W +KN +++S P Y SS V
Sbjct: 155 AARAVPKQTVTFTCRSHGFFPRNLTLKW-FKNGNEISHLETSVEPEET-SVSYRVSSTVQ 212
Query: 413 LPSVSIPQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSK 592
+ V P+D + ++CEV H + ++ + E I VP S P
Sbjct: 213 V--VLEPRDVRSQIICEVDHVTLDRAPLRGIAHISEF-----IQVPPTLEISQQPTMVWN 265
Query: 593 LI---CQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWL 763
+I CQ F P + + W +G V P + + TY S L V S
Sbjct: 266 VIIVTCQIQKFYPPRFQVTWLENGNISRREV---PFTLIVNKDGTYNWISCLLVNISALE 322
Query: 764 SQSVFTCQVEHKG 802
V TCQVEH G
Sbjct: 323 ENMVVTCQVEHDG 335
>ref|NP_001171117.1| tyrosine-protein phosphatase non-receptor type substrate 1 isoform
1 [Mus musculus].
Length = 509
Score = 52.0 bits (123), Expect = 1e-06
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 9/197 (4%)
Frame = +2
Query: 233 VSPPSDESL----VALGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLAS 400
VS P+D + V C + F P ++T W +K+ ++ PS ++S
Sbjct: 154 VSGPADRGIPDQKVNFTCKSHGFSPRNITLKW-FKDGQELHPLETTVNPSGKNVSYNISS 212
Query: 401 S-RVLLPSVSIPQDPEAFLVCEVQH----PSGTKSVSISGPVVEEQPPVLNIFVPTRESF 565
+ RV+L S+ D + ++CEV H S + ++ + P V T++S
Sbjct: 213 TVRVVLNSM----DVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVK----VTQQSP 264
Query: 566 SSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTV 745
+S Q L C+A F P+ + + W +G VS T P +++ TY S+ V
Sbjct: 265 TSMNQ--VNLTCRAERFYPEDLQLIWLENGN--VSRNDT-PKNLTKNTDGTYNYTSLFLV 319
Query: 746 TESEWLSQSVFTCQVEH 796
S VFTCQV+H
Sbjct: 320 NSSAHREDVVFTCQVKH 336
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,561,199
Number of extensions: 1270302
Number of successful extensions: 6102
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 5995
Number of HSP's successfully gapped: 15
Length of query: 570
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 463
Effective length of database: 12,403,707
Effective search space: 5742916341
Effective search space used: 5742916341
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001367
(1711 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 179 6e-45
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 64 3e-10
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 62 1e-09
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 61 2e-09
Alignment gi|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-2... 57 3e-08
Alignment gi|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-... 56 5e-08
Alignment gi|NP_001107166.1| SLA class II histocompatibility antigen, DQ ... 49 7e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 179 bits (453), Expect = 6e-45
Identities = 136/414 (32%), Positives = 199/414 (48%), Gaps = 27/414 (6%)
Frame = +2
Query: 2 YADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRD----YDDS--GDYYAMDLWG 163
YADSVKGRFTISRDNSQNTAYLQMNS+RTEDTA YYC R+ Y+ YY MDLWG
Sbjct: 78 YADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVCFRYNTGCWDGYYGMDLWG 137
Query: 164 PGXXXXXXXXXXXAPNLFPLVSCVSPPSDESLVALGCLARDFLPSSVTFSWNYKNSSKVS 343
PG AP+++PL C S + VALGCLA + P VT +WN S
Sbjct: 138 PGVEVVVSSAPKTAPSVYPLAPCGRDTSGPN-VALGCLASSYFPEPVTMTWN----SGAL 192
Query: 344 SQNIQDFPSVLR-GGKYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSIS------ 502
+ + FPSVL+ G Y SS V +P+ S+ C V HP+ T V
Sbjct: 193 TSGVHTFPSVLQPSGLYSLSSMVTVPASSLSSKS---YTCNVNHPATTTKVDKRVGTKTK 249
Query: 503 -----GPVVEEQPPVLNIFVPTRES---FSSTPQRTSKLICQASDFSPKQISMAWFRDGK 658
P E P + IF P + S TP+ T ++ + + + ++ +W+ DG
Sbjct: 250 PPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHA--EVQFSWYVDGV 307
Query: 659 RVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCT 838
V + + E S TYR+ S+L + +WL F C+V + L +
Sbjct: 308 EVHTAETRPKEEQFNS---TYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKA 364
Query: 839 SNPNSPITVFAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEV-----LKTS 1003
+ V+ + P + +K ++CLV G + +++ W + +G+ +T+
Sbjct: 365 IGQSREPQVYTLPPPAEELSRSK-VTVTCLVIGFYPPD-IHVEW-KSNGQPEPEGNYRTT 421
Query: 1004 IVFSEIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ-SVSKPRG 1162
++ +GTF + +V W+ G+ F C V H L + Q S+SK +G
Sbjct: 422 PPQQDV--DGTFFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQG 473
Score = 138 bits (348), Expect = 8e-33
Identities = 103/342 (30%), Positives = 155/342 (45%), Gaps = 11/342 (3%)
Frame = +2
Query: 509 VVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGP 688
VV P P T L C AS + P+ ++M W + + SGV T P
Sbjct: 143 VVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYFPEPVTMTW--NSGALTSGVHTFP 200
Query: 689 VETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCTSNPNSPI--- 859
LQ S + Y L SM+TV S LS +TC V H + + + P PI
Sbjct: 201 -SVLQPSGL-YSLSSMVTVPASS-LSSKSYTCNVNHPATTTKVDKRVGTKTKPPCPICPG 257
Query: 860 ------TVFAIAPSFAG-IFLTKSAKLSCLVTGLVTRES-LNISWTRQDGEVLKTSIVFS 1015
+VF P + ++++ +++C+V + + + SW EV
Sbjct: 258 CEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVDGVEVHTAETRPK 317
Query: 1016 EIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQSVSKPRGIARHMPSVYVL 1195
E N T+ + +DW G F C V + DLP+P+ +++SK G +R P VY L
Sbjct: 318 EEQFNSTYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTISKAIGQSRE-PQVYTL 376
Query: 1196 PPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXXXXXXSY 1375
PP EELS + +VTCLV GF P D+ V+W G+P Y T+ ++
Sbjct: 377 PPPAEELSRSK-VTVTCLVIGFYPPDIHVEWKSNGQPEPEGNYRTT----PPQQDVDGTF 431
Query: 1376 FVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTLGQSTG 1501
F+ S L V W GET+ C V HEAL + T++++ ++ G
Sbjct: 432 FLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQG 473
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 63.9 bits (154), Expect = 3e-10
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Frame = +2
Query: 392 LASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSISGPV-VEEQP---PVLNIFVPTRE 559
++ ++ L + EA C ++ GT + V V QP P +N+F P+ E
Sbjct: 86 ISGNKATLTITGAQAEDEADYFCALRKSGGTVTFGGGTHVTVLGQPKAAPTVNLFPPSSE 145
Query: 560 SFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSML 739
+ + L+C SDF P +++ W G V GV T + + S Y S L
Sbjct: 146 ELGTNK---ATLVCLISDFYPGAVTVTWKAGGTTVTQGVET--TKPSKQSNNKYAASSYL 200
Query: 740 TVTESEWLSQSVFTCQVEHKGLNYEKNAS 826
++ S+W S S FTCQV H+G EK +
Sbjct: 201 ALSASDWKSSSGFTCQVTHEGTIVEKTVT 229
Score = 53.9 bits (128), Expect = 3e-07
Identities = 35/112 (31%), Positives = 49/112 (43%)
Frame = +2
Query: 1160 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1339
G + P+V + PP+ EEL + A++ CL+ F P V V W G V+ T
Sbjct: 129 GQPKAAPTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPS 187
Query: 1340 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTLGQS 1495
Y S L +SA DW +TC V HE T+ E+T+ S
Sbjct: 188 KQSNN-----KYAASSYLALSASDWKSSSGFTCQVTHEG---TIVEKTVTPS 231
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 61.6 bits (148), Expect = 1e-09
Identities = 34/100 (34%), Positives = 50/100 (50%)
Frame = +2
Query: 527 PVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 706
P +N+F P+ E + + L+C SDF P +++ W G V GV T + +
Sbjct: 134 PTVNLFPPSSEELGTNK---ATLVCLISDFYPGAVTVTWKAGGTTVTQGVET--TKPSKQ 188
Query: 707 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 826
S Y S L ++ S+W S S FTCQV H+G EK +
Sbjct: 189 SNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVT 228
Score = 55.8 bits (133), Expect = 7e-08
Identities = 56/163 (34%), Positives = 71/163 (43%), Gaps = 7/163 (4%)
Frame = +2
Query: 5 ADSVKGRFTISRDNSQNTAYLQMNSVRTEDTARYYCGRDYDDSGDYYAMDLWGPGXXXXX 184
A + RF+ S+ S NTA L ++ + ED A YYC S D A L+G G
Sbjct: 73 ASGIPDRFSGSK--SGNTATLTISGAQAEDEADYYC----QSSDDSDAGPLFGRGTRLSV 126
Query: 185 XXXXXXAP--NLFPLVSCVSPPSDESL----VALGCLARDFLPSSVTFSWNYKNSSKVSS 346
AP NLF PPS E L L CL DF P +VT +W K +
Sbjct: 127 LRQPKAAPTVNLF-------PPSSEELGTNKATLVCLISDFYPGAVTVTW--KAGGTTVT 177
Query: 347 QNIQDF-PSVLRGGKYLASSRVLLPSVSIPQDPEAFLVCEVQH 472
Q ++ PS KY ASS + L S S + F C+V H
Sbjct: 178 QGVETTKPSKQSNNKYAASSYLAL-SASDWKSSSGF-TCQVTH 218
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/106 (32%), Positives = 47/106 (44%)
Frame = +2
Query: 1178 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1357
P+V + PP+ EEL + A++ CL+ F P V V W G V+ T
Sbjct: 134 PTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSKQSNN- 191
Query: 1358 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTLGQS 1495
Y S L +SA DW +TC V HE T+ E+T+ S
Sbjct: 192 ----KYAASSYLALSASDWKSSSGFTCQVTHEG---TIVEKTVTPS 230
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/113 (31%), Positives = 55/113 (48%)
Frame = +2
Query: 479 GTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 658
GT+ + P + P + +F P+ E S+ + L+C SDF P +++ W G
Sbjct: 99 GTRLTVLGQP---KAAPTVTLFPPSPEELSTNK---ATLVCLISDFYPGAVTVTWKAGGT 152
Query: 659 RVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK 817
+ GV T + + S Y S L ++ S+W S S FTCQV H+G EK
Sbjct: 153 TITQGVDTS--QPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEK 203
Score = 52.0 bits (123), Expect = 1e-06
Identities = 30/98 (30%), Positives = 44/98 (44%)
Frame = +2
Query: 1160 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1339
G + P+V + PP+PEELS + A++ CL+ F P V V W G ++ +
Sbjct: 106 GQPKAAPTVTLFPPSPEELSTNK-ATLVCLISDFYPGAVTVTWKAGGTTITQGVDTSQPS 164
Query: 1340 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHE 1453
Y S L +SA DW +TC V H+
Sbjct: 165 KQSNN-----KYAASSYLALSASDWKSSSGFTCQVTHQ 197
>ref|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-22-like [Sus scrofa].
Length = 308
Score = 57.0 bits (136), Expect = 3e-08
Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 9/199 (4%)
Frame = +2
Query: 275 LARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGGKYLASSRVLLPSVSIPQDPEAFL 454
+A + S+ T+ Y ++ + S + F S++ + A S + + +
Sbjct: 62 IATSDVGSNATYEKGYNSAKFLISHPDETFSSLVVRSVHPADSSLYFCGARDSKGTDPLY 121
Query: 455 VCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESFSSTPQRTSKLICQASDFSPKQIS 634
E GT+ +++ + + +PP + +F P+ S T + T L+C A+ F P +
Sbjct: 122 FGE-----GTR-LTVLEDLQQVRPPKVAVFEPSEAEISRTQKAT--LVCLATGFYPDHVE 173
Query: 635 MAWFRDGKRVVSGVSTGPVETLQSSP----VTYRLHSMLTVTESEWLS-QSVFTCQVEHK 799
++W+ +GK+V SGVST ++ + P +Y L S L VT + W + ++ F CQV+
Sbjct: 174 LSWWVNGKQVQSGVST-DLQPYREDPSRNDSSYCLSSRLRVTAAFWHNPRNHFRCQVQFY 232
Query: 800 GL----NYEKNASSLCTSN 844
GL +E N + T N
Sbjct: 233 GLTEDDEWEYNWTKPITQN 251
>ref|XP_003359980.1| PREDICTED: tyrosine-protein phosphatase non-receptor type substrate
1-like [Sus scrofa].
Length = 323
Score = 56.2 bits (134), Expect = 5e-08
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 6/201 (2%)
Frame = +2
Query: 218 PLVSCVSPPSDESLVA----LGCLARDFLPSSVTFSWNYKNSSKVSSQNIQDFPSVLRGG 385
P + + P +++L+ C++ F P ++T W +KN ++SS +Q L+
Sbjct: 115 PSLPVIIGPLEKALIGQAVNFSCISYGFFPENITLKW-FKNGKEISS--LQTHVVKLKES 171
Query: 386 KYLASSRVLLPSVSIPQDPEAFLVCEVQHPSGTKSVSISGPVVEEQPPVLNIFVPTRESF 565
S +S+ QD A++ C+V H +S+ P+ + VP S
Sbjct: 172 NVYKISSTTEVVLSL-QDFYAYITCDVNH------LSLHYPLQGTADLSKTMLVPPTMSI 224
Query: 566 SSTPQRTSKL--ICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSML 739
P +K+ C+A F PK I + W ++G VS + T + + Y + S +
Sbjct: 225 FEHPVSKNKINVTCKAKKFYPKGIWLTWLKNGN--VSRIDKTLTPTKRRDGL-YTVQSSI 281
Query: 740 TVTESEWLSQSVFTCQVEHKG 802
V + + +V TCQ E G
Sbjct: 282 LVNKPHEIEDTVLTCQAEQDG 302
>ref|NP_001107166.1| SLA class II histocompatibility antigen, DQ haplotype C beta chain
precursor [Sus scrofa].
Length = 261
Score = 49.3 bits (116), Expect = 7e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +2
Query: 593 LICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQS 772
L+C +DF P Q+ + WFR+G+ +GV + P+ +++ TY+ +L + E
Sbjct: 147 LVCAVTDFYPSQVKVQWFRNGQEETAGVVSTPL--IRNGDWTYQ---VLVMLEMNLQRGD 201
Query: 773 VFTCQVEHKGL 805
V+TC+VEH L
Sbjct: 202 VYTCRVEHSSL 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,896,194
Number of extensions: 1012651
Number of successful extensions: 4735
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4657
Number of HSP's successfully gapped: 12
Length of query: 570
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 466
Effective length of database: 8,754,644
Effective search space: 4079664104
Effective search space used: 4079664104
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001367
(1711 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894379.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 593 e-166
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 204 1e-49
gb|GL895656.1| Sus scrofa unplaced genomic scaffold chrU_scaffold42 103 3e-19
gb|GL896545.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 88 2e-14
>gb|GL894379.1| Sus scrofa unplaced genomic scaffold chrU_scaffold305
Length = 460
Score = 593 bits (299), Expect = e-166
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 211 tctcttccccctcgtctcctgcgtcagccccccgtccgatgagagcctggtggccctggg 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctcttccccctcgtctcctgcgtcagccccccgtccgatgagagcctggtggccctggg 401
Query: 271 ctgcctggcccgggacttcctgcccagctccgtcaccttctcctggaactacaagaacag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgcctggcccgggacttcctgcccagctccgtcaccttctcctggaactacaagaacag 341
Query: 331 cagcaaggtcagcagccagaacatccaggacttcccgtccgtcctgagaggcggcaagta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cagcaaggtcagcagccagaacatccaggacttcccgtccgtcctgagaggcggcaagta 281
Query: 391 cttggcctcctcccgggtgctcctaccctctgtgagcatcccccaggacccagaggcctt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cttggcctcctcccgggtgctcctaccctctgtgagcatcccccaggacccagaggcctt 221
Query: 451 cctggtgtgcgaggtccagcaccccagtggcaccaagtccgtgtccatctctgggccag 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cctggtgtgcgaggtccagcaccccagtggcaccaagtccgtgtccatctctgggccag 162
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 507 cagtcgtagaggagcagccccccgtcttgaacatcttcgtccccacccgggagtccttct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 cagtcgtagaggagcagccccccgtcttgaacatcttcgtccccacccgggagtccttct 23
Query: 567 ccagtactccccagcgcacgtc 588
||||||||||||||||||||||
Sbjct: 22 ccagtactccccagcgcacgtc 1
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 204 bits (103), Expect = 1e-49
Identities = 115/119 (96%)
Strand = Plus / Minus
Query: 1 ctacgcagactctgtgaagggccgtttcaccatctccagagacaactcccagaacacggc 60
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 2580 ctacgcagactctgtgaagggccgattcaccatctccagcgacaactcccagaacacggc 2521
Query: 61 ctatctgcaaatgaacagcgtgagaaccgaagacacggcccgctattactgtggaagag 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 2520 ctatctgcaaatgaacagcctgagaaccgaagacacggcccgctattactgtgcaagag 2462
>gb|GL895656.1| Sus scrofa unplaced genomic scaffold chrU_scaffold42
Length = 116
Score = 103 bits (52), Expect = 3e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 184 gtcctcagagagccagtctgccccgaatctcttccccctcgtctcctgcgtc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gtcctcagagagccagtctgccccgaatctcttccccctcgtctcctgcgtc 116
>gb|GL896545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold875
Length = 2000
Score = 87.7 bits (44), Expect = 2e-14
Identities = 50/52 (96%)
Strand = Plus / Minus
Query: 184 gtcctcagagagccagtctgccccgaatctcttccccctcgtctcctgcgtc 235
|||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 52 gtcctcagagcgccagtctgccccgagtctcttccccctcgtctcctgcgtc 1
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,749,946
Number of extensions: 211
Number of successful extensions: 211
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 5
Length of query: 1711
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1689
Effective length of database: 2,808,408,574
Effective search space: 4743402081486
Effective search space used: 4743402081486
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)