Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001388
(1573 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 171 1e-42
Alignment gi|XP_002683721.1| PREDICTED: hypothetical protein [Bos taurus]. 82 2e-15
Alignment gi|XP_002702746.1| PREDICTED: hypothetical protein [Bos taurus]. 82 2e-15
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 67 3e-11
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 64 4e-10
Alignment gi|NP_001074373.1| hypothetical protein LOC509513 [Bos taurus]. 59 9e-09
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 58 3e-08
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 55 2e-07
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 55 2e-07
Alignment gi|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus]. 51 2e-06
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 171 bits (434), Expect = 1e-42
Identities = 109/330 (33%), Positives = 167/330 (50%), Gaps = 10/330 (3%)
Frame = +3
Query: 450 CQASDFSPKQ-ISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 626
C F P +S+ W ++G V V P S Y + S LT+ S
Sbjct: 170 CLVQGFFPSAPLSVTWNQNGDSV--SVRNFPAVLAGS---LYTMSSQLTLPASLCPKGQS 224
Query: 627 FTCQVEHKGLNYE--------KNASSLCTSNPNSPITVFAIAPSFAGIFLTKSAKLSCLV 782
TCQV+H + +++SS C PN ++ P+ + L +A L+C +
Sbjct: 225 VTCQVQHLSKASKTVAVPCIIQDSSSCCV--PNCEPSLSVQPPALEDLLLGSNASLTCTL 282
Query: 783 TGLVTRESLNISWTRQDGEVLKTSIVFSEIYAN-GTFGARGEASVCVEDWESGDRFTCTV 959
+GL + E + +W G KT++ S + G + C + W SG F+C+V
Sbjct: 283 SGLKSAEGASFTWNPTGG---KTAVQGSPKRDSCGCYSVSSVLPGCADPWNSGQTFSCSV 339
Query: 960 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1139
TH + S L ++ K G P V++LPP EEL+L E ++TCLV+GFSP +V V+W
Sbjct: 340 THPESKSSLTATIKKDLGNT-FRPQVHLLPPPSEELALNELVTLTCLVRGFSPKEVLVRW 398
Query: 1140 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHT 1319
LQ + + +KY+T ++ V SVL V A+ W G+T++C+VGHEALP
Sbjct: 399 LQGNQELPREKYLT-WGPLPEAGQSVTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLA 457
Query: 1320 VTERTVDKSTGKPTLYNVSLVLSDTASTCY 1409
T++T+D+ GKPT NVS+V+S+ CY
Sbjct: 458 FTQKTIDRLAGKPTHVNVSVVMSEVDGVCY 487
Score = 67.4 bits (163), Expect = 3e-11
Identities = 83/350 (23%), Positives = 135/350 (38%), Gaps = 20/350 (5%)
Frame = +3
Query: 3 DVWGPSFEFFLCSDSQSAPNLFPLVSCVSPQSDDILVALG*LALDFLPXXXXXXXXXXXX 182
D WG + S+S+++P++FPL + + +++ G L F P
Sbjct: 132 DAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVI--GCLVQGFFPSAPLSVTWNQNG 189
Query: 183 TQVCSPNFRYFPSIPRRGKYLGSSRMLLHSVMIPQEPEAFLVCEVLHPSGTKSMSIAGTI 362
V + R FP++ Y SS++ L + + P+ + C+V H S I
Sbjct: 190 DSV---SVRNFPAVLAGSLYTMSSQLTLPASLCPKGQS--VTCQVQHLSKASKTVAVPCI 244
Query: 363 IKEQPPVLNIFIPTRE-SFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVS--- 530
I++ + +P E S S P L+ ++ S+ G + G S
Sbjct: 245 IQDSS---SCCVPNCEPSLSVQPPALEDLLLGSN------ASLTCTLSGLKSAEGASFTW 295
Query: 531 --TGPVETLQSSPV-----TYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSLCT 689
TG +Q SP Y + S+L W S F+C V H E +S T
Sbjct: 296 NPTGGKTAVQGSPKRDSCGCYSVSSVLPGCADPWNSGQTFSCSVTHP----ESKSSLTAT 351
Query: 690 SNPNSPIT----VFAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTS- 854
+ T V + P + L + L+CLV G +E L + W + + E+ +
Sbjct: 352 IKKDLGNTFRPQVHLLPPPSEELALNELVTLTCLVRGFSPKEVL-VRWLQGNQELPREKY 410
Query: 855 IVFSEIYANG----TFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ 992
+ + + G TF V E W+ GD F+C V H LP Q
Sbjct: 411 LTWGPLPEAGQSVTTFAVTSVLRVDAEVWKQGDTFSCMVGHEALPLAFTQ 460
Score = 60.5 bits (145), Expect = 4e-09
Identities = 84/349 (24%), Positives = 128/349 (36%), Gaps = 30/349 (8%)
Frame = +3
Query: 396 IPTRESFSST--PQRTSKLICQASDFSPKQISMAWFRD--GKRV-VSGVSTGPVETLQSS 560
+ RES S P +T L C AS FS + W R GK + TG T +
Sbjct: 21 VQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKALECLACITGGGNTAYNP 80
Query: 561 PVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASS---LCTSNPN--------SP 707
+ RL+ ++S+ +S S+ + E Y S+ C+S N
Sbjct: 81 ALKSRLNITKDKSKSQ-VSLSLSSVTTEDTATYYCAKYSTDDCACSSERNYIDAWGQGLL 139
Query: 708 ITVFAIAPSFAGIFLTK--------SAKLSCLVTGLVTRESLNISWTRQDGEVLKTSIVF 863
+TV + + + IF + CLV G L+++W + V + F
Sbjct: 140 VTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSVTWNQNGDSVSVRN--F 197
Query: 864 SEIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPS-----PLKQSVSKPRGIARHM 1028
+ A + + ++ G TC V H S P S +
Sbjct: 198 PAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPCIIQDSSSCCVPNCE 257
Query: 1029 PSVYVLPPAPEELSLQEWASVTCLVKGFSPAD-VFVQWLQKGEPVSADKYVTSXXXXXXX 1205
PS+ V PPA E+L L AS+TC + G A+ W G +
Sbjct: 258 PSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGKTAVQ--------GSPK 309
Query: 1206 XXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTVDKSTG 1352
Y V SVL A W+ G+T++C V H ++T T+ K G
Sbjct: 310 RDSCGCYSVSSVLPGCADPWNSGQTFSCSVTHPESKSSLT-ATIKKDLG 357
>ref|XP_002683721.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 97
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/55 (74%), Positives = 42/55 (76%)
Frame = -1
Query: 1180 VTYLSADTGSPFCSHCTNTSAGEKPFTRQVTEAHSCRLSSSGAGGSTYTDGMCLA 1016
VTYL TGSP CSHCTNTSAG KPFTRQVTEA S RLS S GGS YTDG +A
Sbjct: 19 VTYLLLVTGSPLCSHCTNTSAGAKPFTRQVTEADSRRLSCSRVGGSRYTDGGFMA 73
>ref|XP_002702746.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 97
Score = 81.6 bits (200), Expect = 2e-15
Identities = 41/55 (74%), Positives = 42/55 (76%)
Frame = -1
Query: 1180 VTYLSADTGSPFCSHCTNTSAGEKPFTRQVTEAHSCRLSSSGAGGSTYTDGMCLA 1016
VTYL TGSP CSHCTNTSAG KPFTRQVTEA S RLS S GGS YTDG +A
Sbjct: 19 VTYLLLVTGSPLCSHCTNTSAGAKPFTRQVTEADSRRLSCSRVGGSRYTDGGFMA 73
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 67.4 bits (163), Expect = 3e-11
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +3
Query: 375 PPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQ 554
PP + +F P+ E S+ T+ L+C SDF P +++AW DG V GV T + Q
Sbjct: 160 PPSVTLFPPSTEELSTY---TATLVCLISDFYPGNVTVAWKADGSPVTRGVVTS--QASQ 214
Query: 555 SSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS-SLCT 689
S Y S LT+T SEW +S ++C+V H+G K S C+
Sbjct: 215 QSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKTVKPSACS 260
Score = 55.5 bits (132), Expect = 1e-07
Identities = 35/99 (35%), Positives = 47/99 (47%)
Frame = +3
Query: 1029 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1208
PSV + PP+ EELS A++ CL+ F P +V V W G PV+ VTS
Sbjct: 161 PSVTLFPPSTEELSTYT-ATLVCLISDFYPGNVTVAWKADGSPVTRG-VVTS----QASQ 214
Query: 1209 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVT 1325
Y S LT++ +W +Y+C V HE T T
Sbjct: 215 QSSSKYVASSYLTLTGSEWKPKSSYSCEVTHEGSTVTKT 253
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 63.9 bits (154), Expect = 4e-10
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 9/143 (6%)
Frame = +3
Query: 288 EPEAFLVCEVLHPSGTKSMSI---AGTIIK-----EQPPVLNIFIPTRESFSSTPQRTSK 443
E EA C+ SG S+ GT + + PP + +F P++E S+ +
Sbjct: 99 EDEADYYCQSADISGPVSLCDLFGGGTRVTVLGQPKSPPSVTLFPPSKEELSANK---AT 155
Query: 444 LICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQS 623
L+C SDF P +++AW DG + V T + S Y S L++T+S+W S+
Sbjct: 156 LVCLISDFYPGSVTVAWKADGSTITRNVKT--TRASKQSNSKYAASSYLSLTDSDWKSKG 213
Query: 624 VFTCQVEHKGLNYEKNA-SSLCT 689
++C+V H+G K +S C+
Sbjct: 214 SYSCEVTHEGSTVTKTVKTSACS 236
Score = 54.3 bits (129), Expect = 3e-07
Identities = 33/108 (30%), Positives = 49/108 (45%)
Frame = +3
Query: 1011 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1190
G + PSV + PP+ EELS + A++ CL+ F P V V W G ++ + T
Sbjct: 131 GQPKSPPSVTLFPPSKEELSANK-ATLVCLISDFYPGSVTVAWKADGSTITRNVKTTRAS 189
Query: 1191 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERT 1334
Y S L+++ DW +Y+C V HE T T +T
Sbjct: 190 KQSNS-----KYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKT 232
>ref|NP_001074373.1| hypothetical protein LOC509513 [Bos taurus].
Length = 312
Score = 59.3 bits (142), Expect = 9e-09
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Frame = +3
Query: 330 GTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 509
GTK ++I + + PP + +F P+ S T + T L+C A+ F P + + W+ + K
Sbjct: 128 GTK-LTIVDDLSRVHPPKVAVFEPSEAEISRTQKAT--LVCLATGFYPDHVELTWWVNRK 184
Query: 510 RVVSGVSTGPVETLQSSPV----TYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 656
+V +GVST P E+ + P Y L S L VT + W + ++ F CQV+ GL
Sbjct: 185 QVTTGVSTDP-ESYKEDPARDDSRYCLSSRLRVTAAFWHNPRNHFRCQVQFHGL 237
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 57.8 bits (138), Expect = 3e-08
Identities = 29/100 (29%), Positives = 49/100 (49%)
Frame = +3
Query: 369 EQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVET 548
+ PP + +F P+ E + + L+C SDF P +++ W DG + V T
Sbjct: 133 KSPPSVTLFPPSTEELNGNK---ATLVCLISDFYPGSVTVVWKADGSTITRNVET--TRA 187
Query: 549 LQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK 668
+ S Y S L++T S+W S+ ++C+V H+G K
Sbjct: 188 SKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTK 227
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/105 (29%), Positives = 48/105 (45%)
Frame = +3
Query: 1011 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1190
G + PSV + PP+ EEL+ + A++ CL+ F P V V W G ++ + T
Sbjct: 130 GQPKSPPSVTLFPPSTEELNGNK-ATLVCLISDFYPGSVTVVWKADGSTITRNVETTRAS 188
Query: 1191 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVT 1325
Y S L++++ DW +Y+C V HE T T
Sbjct: 189 KQSNS-----KYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKT 228
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/93 (33%), Positives = 45/93 (48%)
Frame = +3
Query: 378 PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 557
P + +F P+ E + T ++C +DF PK I++ W DG S S
Sbjct: 133 PSVFLFKPSDEQLKTG---TVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDS 189
Query: 558 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGL 656
TY L S+LT+ SE+ S +TC+V HK L
Sbjct: 190 KKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
Score = 53.9 bits (128), Expect = 4e-07
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = +3
Query: 1029 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1208
PSV++ P+ E+L SV CLV F P D+ V+W G S+ + S
Sbjct: 133 PSVFLFKPSDEQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 1209 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTE 1328
+Y + S+LT+ + ++ + YTC V H++L T+ +
Sbjct: 192 S---TYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVK 228
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/93 (33%), Positives = 45/93 (48%)
Frame = +3
Query: 378 PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 557
P + +F P+ E + T ++C +DF PK I++ W DG S S
Sbjct: 133 PSVFLFKPSDEQLKTG---TVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDS 189
Query: 558 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGL 656
TY L S+LT+ SE+ S +TC+V HK L
Sbjct: 190 KKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSL 222
Score = 53.9 bits (128), Expect = 4e-07
Identities = 30/100 (30%), Positives = 50/100 (50%)
Frame = +3
Query: 1029 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1208
PSV++ P+ E+L SV CLV F P D+ V+W G S+ + S
Sbjct: 133 PSVFLFKPSDEQLKTGT-VSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQNSFTDQDSKK 191
Query: 1209 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTE 1328
+Y + S+LT+ + ++ + YTC V H++L T+ +
Sbjct: 192 S---TYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVK 228
>ref|NP_001074380.1| signal-regulatory protein beta 1 [Bos taurus].
Length = 386
Score = 51.2 bits (121), Expect = 2e-06
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 4/214 (1%)
Frame = +3
Query: 366 KEQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRV-VSGVSTGPV 542
K PP+++ + +TP++T C + FSP+ IS+ WF++G + S S P
Sbjct: 145 KPSPPMVS-----GPAVRATPEQTVSFTCTSHGFSPRNISLKWFKNGNELSASQTSVDPE 199
Query: 543 ETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK--NASSLCTSNPNSPITV 716
E VTY + S + + S +C+V H L + ++ + P T+
Sbjct: 200 E----DGVTYSITSTTELLLAPGDVHSQVSCEVAHVTLQGSRPLRGTASLSKTIRVPPTL 255
Query: 717 FAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEVLKTSIVFSEI-YANGTFG 893
AG + ++CLV ++ L ++W ++G + +T + I +GTF
Sbjct: 256 EVTQQPMAG---NQVNIITCLVNKFYPQQ-LQLTWL-ENGNMSRTEAASTLIENKDGTFN 310
Query: 894 ARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQS 995
V FTC V H P+ K S
Sbjct: 311 YMSWLLVISSAHRKAVVFTCQVEHDGQPAVTKNS 344
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,144,143
Number of extensions: 1369763
Number of successful extensions: 6266
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6176
Number of HSP's successfully gapped: 18
Length of query: 524
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,140,958
Effective search space: 5896779486
Effective search space used: 5896779486
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001388
(1573 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-lik... 65 2e-10
Alignment gi|XP_858359.1| PREDICTED: similar to immunoglobulin iota chain... 64 3e-10
Alignment gi|XP_856755.1| PREDICTED: similar to T-cell receptor beta chai... 64 4e-10
Alignment gi|XP_859202.1| PREDICTED: similar to immunoglobulin iota chain... 63 7e-10
Alignment gi|XP_858856.1| PREDICTED: similar to immunoglobulin iota chain... 63 9e-10
Alignment gi|XP_857697.1| PREDICTED: similar to T-cell receptor beta chai... 62 1e-09
Alignment gi|XP_856796.1| PREDICTED: similar to T-cell receptor beta chai... 62 1e-09
Alignment gi|XP_856710.1| PREDICTED: similar to T-cell receptor beta chai... 62 1e-09
Alignment gi|XP_849325.1| PREDICTED: similar to immunoglobulin iota chain... 62 2e-09
Alignment gi|XP_857822.1| PREDICTED: similar to T-cell receptor beta chai... 62 2e-09
>ref|XP_855777.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 2 [Canis familiaris].
Length = 233
Score = 64.7 bits (156), Expect = 2e-10
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Frame = +3
Query: 288 EPEAFLVCEVLHPSGTKSMSIAGT--IIKEQP---PVLNIFIPTRESFSSTPQRTSKLIC 452
E EA C+V SG + GT + QP P++ +F P+ E + + L+C
Sbjct: 99 EDEADYYCQVWDSSGHCWVFGEGTQLTVLGQPKSSPLVTLFPPSSEELGANK---ATLVC 155
Query: 453 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 632
SDF P + +AW DG ++ GV T + + S Y S L++T +W S S F+
Sbjct: 156 LISDFYPSGLKVAWKADGSTIIQGVET--TKPSKQSNNKYTASSYLSLTPDKWKSHSSFS 213
Query: 633 CQVEHKGLNYEKNAS 677
C V H+G EK +
Sbjct: 214 CLVTHQGSTVEKKVA 228
>ref|XP_858359.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 25 [Canis familiaris].
Length = 240
Score = 64.3 bits (155), Expect = 3e-10
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 3/164 (1%)
Frame = +3
Query: 195 SPNFRYFPSIPRRGKYLGSSRMLLHSVMIPQEPEAFLVCEVLHPSG-TKSMSIAGTIIKE 371
SP F + + YL S + E EA C LH T+ I T++ +
Sbjct: 84 SPRFSGSKDVAKNTGYLSISEL-------QPEDEATYFCAALHDDKQTRGGGIELTVLGQ 136
Query: 372 QP--PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVE 545
P + +F+P + + L+C SDF P +++AW DG V GV T +
Sbjct: 137 PKASPSVTLFLPLSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET--TK 191
Query: 546 TLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 677
+ S Y S L++T +W S S F+C V H+G EK +
Sbjct: 192 PSRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 235
>ref|XP_856755.1| PREDICTED: similar to T-cell receptor beta chain C region isoform 5
[Canis familiaris].
Length = 316
Score = 63.9 bits (154), Expect = 4e-10
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = +3
Query: 327 SGTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDG 506
SGTK +S+ + K PP + +F P+ S T + T L+C A+ F P + ++W+ +G
Sbjct: 132 SGTK-LSVLEDLQKVTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELSWWVNG 188
Query: 507 KRVVSGVSTGP---VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 656
K V SG ST P E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 189 KEVTSGFSTDPQPYKERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 242
>ref|XP_859202.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 46 [Canis familiaris].
Length = 241
Score = 63.2 bits (152), Expect = 7e-10
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
Frame = +3
Query: 195 SPNFRYFPSIPRRGKYLGSSRMLLHSVMIPQEPEAFLVCEVLHPSG--TKSMSIAGTIIK 368
SP F + + YL S + E EA C HPS S I T++
Sbjct: 84 SPRFSGSKDVAKNTGYLSISEL-------QPEDEATYFCAWRHPSPWFVFSEGIELTVLG 136
Query: 369 EQP--PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPV 542
+ P + +F+P + + L+C SDF P +++AW DG V GV T
Sbjct: 137 QPKASPSVTLFLPLSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET--T 191
Query: 543 ETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 677
+ + S Y S L++T +W S S F+C V H+G EK +
Sbjct: 192 KPSRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 236
>ref|XP_858856.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 37 [Canis familiaris].
Length = 244
Score = 62.8 bits (151), Expect = 9e-10
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 7/168 (4%)
Frame = +3
Query: 195 SPNFRYFPSIPRRGKYLGSSRMLLHSVMIPQEPEAFLVCEVLHPSGTK-----SMSIAGT 359
SP F + + YL S + E EA CE +H + S I T
Sbjct: 84 SPRFSGSKDVAKNTGYLSISEL-------QPEDEATYFCESVHHRSSSPWFVFSEGIELT 136
Query: 360 IIKEQP--PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVST 533
++ + P + +F+P + + L+C SDF P +++AW DG V GV T
Sbjct: 137 VLGQPKASPSVTLFLPLSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET 193
Query: 534 GPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 677
+ + S Y S L++T +W S S F+C V H+G EK +
Sbjct: 194 --TKPSRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 239
>ref|XP_857697.1| PREDICTED: similar to T-cell receptor beta chain C region isoform
27 [Canis familiaris].
Length = 308
Score = 62.4 bits (150), Expect = 1e-09
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Frame = +3
Query: 312 EVLHPSGTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMA 491
EV GT+ +++ + K PP + +F P+ S T + T L+C A+ F P + ++
Sbjct: 119 EVFFGKGTR-LTVIEDLQKVTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELS 175
Query: 492 WFRDGKRVVSGVSTGP---VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 656
W+ +GK V SG ST P E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 176 WWVNGKEVTSGFSTDPQPYKERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 234
>ref|XP_856796.1| PREDICTED: similar to T-cell receptor beta chain C region isoform 6
[Canis familiaris].
Length = 313
Score = 62.4 bits (150), Expect = 1e-09
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Frame = +3
Query: 258 MLLHSVMIPQEPEAFLVCEVLHPSGTKS------------MSIAGTIIKEQPPVLNIFIP 401
++L S I Q F C + SGT S +S+ + K PP + +F P
Sbjct: 95 LILESARINQTSVYF--CASSYGSGTPSSGEPRHFGDGTRLSVLEDLQKVTPPTVTVFEP 152
Query: 402 TRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGP---VETLQSSPVTY 572
+ S T + T L+C A+ F P + ++W+ +GK V SG ST P E + +Y
Sbjct: 153 SEAEISRTQKAT--LVCLATGFYPDHVELSWWVNGKEVTSGFSTDPQPYKERPSENDSSY 210
Query: 573 RLHSMLTVTESEWLS-QSVFTCQVEHKGL 656
L S L V+ S W + ++ F CQV+ GL
Sbjct: 211 CLSSRLRVSASFWHNPRNHFRCQVQFYGL 239
>ref|XP_856710.1| PREDICTED: similar to T-cell receptor beta chain C region isoform 4
[Canis familiaris].
Length = 310
Score = 62.4 bits (150), Expect = 1e-09
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Frame = +3
Query: 312 EVLHPSGTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMA 491
EV GT+ +++ + K PP + +F P+ S T + T L+C A+ F P + ++
Sbjct: 121 EVFFGKGTR-LTVIEDLQKVTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELS 177
Query: 492 WFRDGKRVVSGVSTGP---VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 656
W+ +GK V SG ST P E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 178 WWVNGKEVTSGFSTDPQPYKERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 236
>ref|XP_849325.1| PREDICTED: similar to immunoglobulin iota chain preproprotein
isoform 2 [Canis familiaris].
Length = 242
Score = 62.0 bits (149), Expect = 2e-09
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Frame = +3
Query: 195 SPNFRYFPSIPRRGKYLGSSRMLLHSVMIPQEPEAFLVCEVLHPSGTKSMSIAGTI---I 365
SP F + + YL S + E EA C PS + + G I +
Sbjct: 84 SPRFSGSKDVAKNTGYLSISEL-------QPEDEATYFCAAW-PSSLRGWVVGGGIELTV 135
Query: 366 KEQP---PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTG 536
QP P + +F+P + + L+C SDF P +++AW DG V GV T
Sbjct: 136 LGQPKASPSVTLFLPLSGELGADK---ATLVCLISDFYPSGVTVAWKADGSPVTQGVET- 191
Query: 537 PVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 677
+ + S Y S L++T +W S S F+C V H+G EK +
Sbjct: 192 -TKPSRQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVA 237
>ref|XP_857822.1| PREDICTED: similar to T-cell receptor beta chain C region isoform
29 [Canis familiaris].
Length = 309
Score = 62.0 bits (149), Expect = 2e-09
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Frame = +3
Query: 231 RGKYLGSSRMLLHSVM----IPQEPEAFLVCEVLHPSGTKS----------MSIAGTIIK 368
R K+ S R L+ S + + E + C + +G S +S+ + K
Sbjct: 78 REKFPISRRTLMFSTLTVSNLSLEDTSSYFCSAITSAGAPSSAQHFGDGTRLSVLEDLQK 137
Query: 369 EQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGP--- 539
PP + +F P+ S T + T L+C A+ F P + ++W+ +GK V SG ST P
Sbjct: 138 VTPPTVTVFEPSEAEISRTQKAT--LVCLATGFYPDHVELSWWVNGKEVTSGFSTDPQPY 195
Query: 540 VETLQSSPVTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL 656
E + +Y L S L V+ S W + ++ F CQV+ GL
Sbjct: 196 KERPSENDSSYCLSSRLRVSASFWHNPRNHFRCQVQFYGL 235
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,183,171
Number of extensions: 1387040
Number of successful extensions: 6733
Number of sequences better than 1.0e-05: 117
Number of HSP's gapped: 6527
Number of HSP's successfully gapped: 128
Length of query: 524
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 417
Effective length of database: 15,307,552
Effective search space: 6383249184
Effective search space used: 6383249184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001388
(1573 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 60 7e-09
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 52 2e-06
Alignment gi|XP_003120321.1| PREDICTED: HLA class II histocompatibility a... 50 8e-06
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 59.7 bits (143), Expect = 7e-09
Identities = 32/100 (32%), Positives = 51/100 (51%)
Frame = +3
Query: 378 PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 557
P + +F P+ E + + L+C SDF P +++AW DG V +GV T + +
Sbjct: 115 PTVTLFPPSSEELQANK---ATLVCLISDFYPGAVTVAWKADGSPVKAGVET--TKPSKQ 169
Query: 558 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 677
S Y S L++T +W S ++CQV H+G EK +
Sbjct: 170 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 209
Score = 52.8 bits (125), Expect = 9e-07
Identities = 32/103 (31%), Positives = 47/103 (45%)
Frame = +3
Query: 1029 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1208
P+V + PP+ EEL + A++ CL+ F P V V W G PV A T
Sbjct: 115 PTVTLFPPSSEELQANK-ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTK-----PSK 168
Query: 1209 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTV 1337
Y S L+++ + W +Y+C V HE + E+TV
Sbjct: 169 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG---STVEKTV 208
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/100 (28%), Positives = 48/100 (48%)
Frame = +3
Query: 378 PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 557
P + +F P+ E + + L+C +DF P +++ W DG + GV +
Sbjct: 114 PSVTLFPPSSEELQANK---ATLVCLMNDFYPGILTVTWKADGTPITQGVEM--TTPSKQ 168
Query: 558 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNAS 677
S Y S L++T +W S+ ++CQV H+G EK +
Sbjct: 169 SNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTVA 208
Score = 49.7 bits (117), Expect = 8e-06
Identities = 35/128 (27%), Positives = 58/128 (45%)
Frame = +3
Query: 954 TVTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFV 1133
+VTH +S+P+ PSV + PP+ EEL + A++ CL+ F P + V
Sbjct: 93 SVTHVFGSGTQLTVLSQPKAT----PSVTLFPPSSEELQANK-ATLVCLMNDFYPGILTV 147
Query: 1134 QWLQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALP 1313
W G P++ +T+ Y S L+++ + W +Y+C V HE
Sbjct: 148 TWKADGTPITQGVEMTT-----PSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEG-- 200
Query: 1314 HTVTERTV 1337
+ E+TV
Sbjct: 201 -STVEKTV 207
>ref|XP_003120321.1| PREDICTED: HLA class II histocompatibility antigen, DQ beta 1
chain-like isoform 2 [Homo sapiens].
Length = 261
Score = 49.7 bits (117), Expect = 8e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 444 LICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQS 623
L+C +DF P QI + WFR+G+ +GV + P+ +++ T+++ ML +T
Sbjct: 147 LVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPL--IRNGDWTFQILVMLEMTPQR---GD 201
Query: 624 VFTCQVEHKGL 656
V+TC VEH L
Sbjct: 202 VYTCHVEHPSL 212
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,059,070
Number of extensions: 1353739
Number of successful extensions: 6200
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6088
Number of HSP's successfully gapped: 5
Length of query: 524
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,770,016
Effective search space: 6159096672
Effective search space used: 6159096672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001388
(1573 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 157 2e-38
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 157 2e-38
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 150 2e-36
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 57 5e-08
Alignment gi|NP_808321.1| hypothetical protein LOC228592 [Mus musculus]. 51 3e-06
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 157 bits (397), Expect = 2e-38
Identities = 103/330 (31%), Positives = 161/330 (48%), Gaps = 10/330 (3%)
Frame = +3
Query: 450 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 626
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 36 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGRYTMSSQLTLPAVECPEGES 91
Query: 627 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPSFA-------GIFLTKSAKLSCLVT 785
C V+H ++ + P PIT+ + PS + + L A ++C +
Sbjct: 92 VKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLN 151
Query: 786 GLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTV 959
GL E +W G+ V K ++ S G + C E W SG F CTV
Sbjct: 152 GLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKCTV 207
Query: 960 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1139
TH + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V+W
Sbjct: 208 THPE-SGTLTGTIAKVT-VNTFPPQVHLLPPPSEELALNELLSLTCLVRAFNPKEVLVRW 265
Query: 1140 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHT 1319
L E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEALP
Sbjct: 266 LHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEALPMN 324
Query: 1320 VTERTVDKSTGKPTLYNVSLVLSDTASTCY 1409
T++T+D+ +GKPT +VS+++S+ CY
Sbjct: 325 FTQKTIDRLSGKPTNVSVSVIMSEGDGICY 354
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 157 bits (397), Expect = 2e-38
Identities = 103/330 (31%), Positives = 161/330 (48%), Gaps = 10/330 (3%)
Frame = +3
Query: 450 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 626
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 95 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGRYTMSSQLTLPAVECPEGES 150
Query: 627 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFAIAPSFA-------GIFLTKSAKLSCLVT 785
C V+H ++ + P PIT+ + PS + + L A ++C +
Sbjct: 151 VKCSVQHDSNPVQELDVNCSGPTPPPPITIPSCQPSLSLQRPALEDLLLGSDASITCTLN 210
Query: 786 GLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTV 959
GL E +W G+ V K ++ S G + C E W SG F CTV
Sbjct: 211 GLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKCTV 266
Query: 960 THTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQW 1139
TH + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V+W
Sbjct: 267 THPE-SGTLTGTIAKVT-VNTFPPQVHLLPPPSEELALNELLSLTCLVRAFNPKEVLVRW 324
Query: 1140 LQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHT 1319
L E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEALP
Sbjct: 325 LHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAETWKQGDQYSCMVGHEALPMN 383
Query: 1320 VTERTVDKSTGKPTLYNVSLVLSDTASTCY 1409
T++T+D+ +GKPT +VS+++S+ CY
Sbjct: 384 FTQKTIDRLSGKPTNVSVSVIMSEGDGICY 413
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 150 bits (380), Expect = 2e-36
Identities = 104/332 (31%), Positives = 161/332 (48%), Gaps = 12/332 (3%)
Frame = +3
Query: 450 CQASDFSPK-QISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 626
C D+ P +++ W + GK + + V+ P +S Y + S LT+ E
Sbjct: 31 CLIHDYFPSGTMNVTWGKSGKDITT-VNFPPA---LASGGGYTMSSQLTLPAVECPEGES 86
Query: 627 FTCQVEHKGLNYEKNASSLCTSNPNSPIT---------VFAIAPSFAGIFLTKSAKLSCL 779
C V+H N + + C S P P T + P+ + L A ++C
Sbjct: 87 VKCSVQHDS-NAVQELNVKC-SGPPPPTTPPPPSCQPSLSLQRPALEDLLLGSDASITCT 144
Query: 780 VTGLVTRESLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTC 953
+ GL E +W G+ V K ++ S G + C E W SG F C
Sbjct: 145 LNGLRNPEGAVFTWEPSTGKDAVQKKAVQNS----CGCYSVSSVLPGCAERWNSGASFKC 200
Query: 954 TVTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFV 1133
TVTH + + L +++K + P V++LPP EEL+L E S+TCLV+ F+P +V V
Sbjct: 201 TVTHPESDT-LTGTIAKIT-VNTFPPQVHLLPPPSEELALNELVSLTCLVRAFNPKEVLV 258
Query: 1134 QWLQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALP 1313
+WL E +S + Y+ +Y V SVL VSA+ W G+ Y+C+VGHEALP
Sbjct: 259 RWLHGNEELSPESYLV-FEPLKEPGEGATTYLVTSVLRVSAEIWKQGDQYSCMVGHEALP 317
Query: 1314 HTVTERTVDKSTGKPTLYNVSLVLSDTASTCY 1409
T++T+D+ +GKPT +VS+++S+ CY
Sbjct: 318 MNFTQKTIDRLSGKPTNVSVSVIMSEGDGICY 349
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 56.6 bits (135), Expect = 5e-08
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Frame = +3
Query: 279 IPQEPEAFLVCEVLHPSGTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQRTSKLICQA 458
+P +P+ + V G ++I G + P++ +F+P+ ++ + + L+C
Sbjct: 84 LPSKPQFWYVF-----GGGTQLTILGQ--PKSDPLVTLFLPSLKNLQANK---ATLVCLV 133
Query: 459 SDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVT---YRLHSMLTVTESEWLSQSVF 629
S+F P + + W DG V GV ET Q S T Y + S LT+ +W+ S +
Sbjct: 134 SEFYPGTLVVDWKVDGVPVTQGV-----ETTQPSKQTNNKYMVSSYLTLISDQWMPHSRY 188
Query: 630 TCQVEHKGLNYEKNAS 677
+C+V H+G EK+ S
Sbjct: 189 SCRVTHEGNTVEKSVS 204
>ref|NP_808321.1| hypothetical protein LOC228592 [Mus musculus].
Length = 487
Score = 50.8 bits (120), Expect = 3e-06
Identities = 77/355 (21%), Positives = 141/355 (39%), Gaps = 12/355 (3%)
Frame = +3
Query: 285 QEPEAFLVCEVLHPSGTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQ------RTSKL 446
Q+ + + CEV H G + TI Q VL + IPT + + P+ + L
Sbjct: 105 QDISSQITCEVTH--GDLKEPLRMTINLSQ--VLRV-IPTLKITTEDPEIQDHVHQKVNL 159
Query: 447 ICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSV 626
C + F P+ + + W ++G ++ + +T ++S TY L L V L+++
Sbjct: 160 TCHVNHFYPQNMDLIWTKNGHKIPTMELP---QTTRNSDGTYSLQHTLQVDAI--LNKTD 214
Query: 627 FTCQVEHKGLNYEKNASSLCTSNPNSPITVFA--IAPSFAGIFLTKSAKLSCLVTGLVTR 800
F C V KN+ +L T ++ + S +L + L TR
Sbjct: 215 FVCWVIQDDQPPVKNSITLGAPRKIRGRTEYSHHLEGPLQRFPPGASIQLKYTSSALQTR 274
Query: 801 ESLNISWTRQDGEVLKTSIVFSEIYANG-TFGARGEASVCVEDWESGDRFTCTVTHTDLP 977
+ + ++W + + L+T + +++NG T+ A V +E + C V H L
Sbjct: 275 Q-VTVTWLKNNHTRLQTQ---TNVFSNGETYNVTSTAIVSLESDDILSLVLCLVEHKSLV 330
Query: 978 SPLKQSVSKPRGIARHMPSVYVLPPA---PEELSLQEWASVTCLVKGFSPADVFVQWLQK 1148
K ++ +PPA + ++ +VTC V+ F P +V++ WL+
Sbjct: 331 VFQK---------VIYLGQYLCVPPAVRVSQSSTVSSLVTVTCHVQRFYPQEVYLSWLED 381
Query: 1149 GEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALP 1313
+ + T SY ++ + V+ + TC V HE P
Sbjct: 382 CHVIRRIEQPT------PKRNEDGSYTLEVLQLVNTSVERSDQVLTCKVEHEEHP 430
Score = 49.3 bits (116), Expect = 8e-06
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Frame = +3
Query: 753 TKSAKLSCLVTGLVTRE-SLNISWTRQDGE--VLKTSIVFSEIYANGTFGARGEASVCVE 923
T S+ + L T R +L+++W R + E T +V N ++ R +A V +
Sbjct: 47 TPSSSVFFLCTAAPFRSMNLSVNWLRNNNEHPASTTHVVHVN---NDSYSLRSKAWVTLT 103
Query: 924 DWESGDRFTCTVTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPE-ELSLQEWASVTCL 1100
+ + TC VTH DL PL+ +++ + + R +P++ + PE + + + ++TC
Sbjct: 104 KQDISSQITCEVTHGDLKEPLRMTINLSQ-VLRVIPTLKITTEDPEIQDHVHQKVNLTCH 162
Query: 1101 VKGFSPADVFVQWLQKGEPV 1160
V F P ++ + W + G +
Sbjct: 163 VNHFYPQNMDLIWTKNGHKI 182
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,106,837
Number of extensions: 1126588
Number of successful extensions: 5174
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5083
Number of HSP's successfully gapped: 6
Length of query: 524
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 418
Effective length of database: 12,433,743
Effective search space: 5197304574
Effective search space used: 5197304574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001388
(1573 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 141 9e-34
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 63 4e-10
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 62 7e-10
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 60 3e-09
Alignment gi|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-2... 56 5e-08
Alignment gi|NP_001107166.1| SLA class II histocompatibility antigen, DQ ... 49 6e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 141 bits (356), Expect = 9e-34
Identities = 99/313 (31%), Positives = 150/313 (47%), Gaps = 11/313 (3%)
Frame = +3
Query: 450 CQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVF 629
C AS + P+ ++M W + + SGV T P LQ S + Y L SM+TV S LS +
Sbjct: 173 CLASSYFPEPVTMTW--NSGALTSGVHTFP-SVLQPSGL-YSLSSMVTVPASS-LSSKSY 227
Query: 630 TCQVEHKGLNYEKNASSLCTSNPNSPI---------TVFAIAPSFAG-IFLTKSAKLSCL 779
TC V H + + + P PI +VF P + ++++ +++C+
Sbjct: 228 TCNVNHPATTTKVDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCV 287
Query: 780 VTGLVTRES-LNISWTRQDGEVLKTSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCT 956
V + + + SW EV E N T+ + +DW G F C
Sbjct: 288 VVDVSKEHAEVQFSWYVDGVEVHTAETRPKEEQFNSTYRVVSVLPIQHQDWLKGKEFKCK 347
Query: 957 VTHTDLPSPLKQSVSKPRGIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQ 1136
V + DLP+P+ +++SK G +R P VY LPP EELS + +VTCLV GF P D+ V+
Sbjct: 348 VNNVDLPAPITRTISKAIGQSRE-PQVYTLPPPAEELSRSK-VTVTCLVIGFYPPDIHVE 405
Query: 1137 WLQKGEPVSADKYVTSXXXXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPH 1316
W G+P Y T+ ++F+ S L V W GET+ C V HEAL +
Sbjct: 406 WKSNGQPEPEGNYRTT----PPQQDVDGTFFLYSKLAVDKARWDHGETFECAVMHEALHN 461
Query: 1317 TVTERTVDKSTGK 1355
T++++ K+ GK
Sbjct: 462 HYTQKSISKTQGK 474
Score = 78.2 bits (191), Expect = 1e-14
Identities = 87/356 (24%), Positives = 151/356 (42%), Gaps = 19/356 (5%)
Frame = +3
Query: 3 DVWGPSFEFFLCSDSQSAPNLFPLVSCVSPQSDDILVALG*LALDFLPXXXXXXXXXXXX 182
D+WGP E + S ++AP+++PL C S VALG LA + P
Sbjct: 134 DLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGP-NVALGCLASSYFPEPVTMTWNSGAL 192
Query: 183 TQVCSPNFRYFPSIPR-RGKYLGSSRMLLHSVMIPQEPEAFLVCEVLHP-SGTKSMSIAG 356
T FPS+ + G Y SS + + + + + C V HP + TK G
Sbjct: 193 TS----GVHTFPSVLQPSGLYSLSSMVTVPASSLSSKS---YTCNVNHPATTTKVDKRVG 245
Query: 357 TIIKEQPPVL--------NIFI-PTRESFSSTPQRTSKLICQASDFSPK--QISMAWFRD 503
T K P+ ++FI P + + +T ++ C D S + ++ +W+ D
Sbjct: 246 TKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAEVQFSWYVD 305
Query: 504 GKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEKNASSL 683
G V + + E S TYR+ S+L + +WL F C+V + L +
Sbjct: 306 GVEVHTAETRPKEEQFNS---TYRVVSVLPIQHQDWLKGKEFKCKVNNVDLPAPITRTIS 362
Query: 684 CTSNPNSPITVFAIAPSFAGIFLTKSAKLSCLVTGLVTRESLNISWTRQDGEV-----LK 848
+ V+ + P + +K ++CLV G + +++ W + +G+ +
Sbjct: 363 KAIGQSREPQVYTLPPPAEELSRSK-VTVTCLVIGFYPPD-IHVEW-KSNGQPEPEGNYR 419
Query: 849 TSIVFSEIYANGTFGARGEASVCVEDWESGDRFTCTVTHTDLPSPLKQ-SVSKPRG 1013
T+ ++ +GTF + +V W+ G+ F C V H L + Q S+SK +G
Sbjct: 420 TTPPQQDV--DGTFFLYSKLAVDKARWDHGETFECAVMHEALHNHYTQKSISKTQG 473
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 63.2 bits (152), Expect = 4e-10
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Frame = +3
Query: 288 EPEAFLVCEVLHPSGTKSMSIAGT--IIKEQP---PVLNIFIPTRESFSSTPQRTSKLIC 452
E EA C + GT + GT + QP P +N+F P+ E + + L+C
Sbjct: 101 EDEADYFCALRKSGGTVTFG-GGTHVTVLGQPKAAPTVNLFPPSSEELGTNK---ATLVC 156
Query: 453 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 632
SDF P +++ W G V GV T + + S Y S L ++ S+W S S FT
Sbjct: 157 LISDFYPGAVTVTWKAGGTTVTQGVET--TKPSKQSNNKYAASSYLALSASDWKSSSGFT 214
Query: 633 CQVEHKGLNYEKNAS 677
CQV H+G EK +
Sbjct: 215 CQVTHEGTIVEKTVT 229
Score = 55.5 bits (132), Expect = 8e-08
Identities = 36/112 (32%), Positives = 49/112 (43%)
Frame = +3
Query: 1011 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1190
G + P+V + PP+ EEL + A++ CL+ F P V V W G V+ T
Sbjct: 129 GQPKAAPTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPS 187
Query: 1191 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTVDKS 1346
Y S L +SA DW +TC V HE T+ E+TV S
Sbjct: 188 KQSNN-----KYAASSYLALSASDWKSSSGFTCQVTHEG---TIVEKTVTPS 231
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 62.4 bits (150), Expect = 7e-10
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Frame = +3
Query: 288 EPEAFLVCEVLHPSGTKSMSIAGTIIK--EQP---PVLNIFIPTRESFSSTPQRTSKLIC 452
E EA C+ S + GT + QP P +N+F P+ E + + L+C
Sbjct: 99 EDEADYYCQSSDDSDAGPLFGRGTRLSVLRQPKAAPTVNLFPPSSEELGTNK---ATLVC 155
Query: 453 QASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQSVFT 632
SDF P +++ W G V GV T + + S Y S L ++ S+W S S FT
Sbjct: 156 LISDFYPGAVTVTWKAGGTTVTQGVET--TKPSKQSNNKYAASSYLALSASDWKSSSGFT 213
Query: 633 CQVEHKGLNYEKNAS 677
CQV H+G EK +
Sbjct: 214 CQVTHEGTIVEKTVT 228
Score = 55.1 bits (131), Expect = 1e-07
Identities = 35/106 (33%), Positives = 47/106 (44%)
Frame = +3
Query: 1029 PSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXXXXXXXX 1208
P+V + PP+ EEL + A++ CL+ F P V V W G V+ T
Sbjct: 134 PTVNLFPPSSEELGTNK-ATLVCLISDFYPGAVTVTWKAGGTTVTQGVETTKPSKQSNN- 191
Query: 1209 XXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTVDKS 1346
Y S L +SA DW +TC V HE T+ E+TV S
Sbjct: 192 ----KYAASSYLALSASDWKSSSGFTCQVTHEG---TIVEKTVTPS 230
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 60.1 bits (144), Expect = 3e-09
Identities = 33/97 (34%), Positives = 49/97 (50%)
Frame = +3
Query: 378 PVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQS 557
P + +F P+ E S+ + L+C SDF P +++ W G + GV T + +
Sbjct: 112 PTVTLFPPSPEELSTNK---ATLVCLISDFYPGAVTVTWKAGGTTITQGVDTS--QPSKQ 166
Query: 558 SPVTYRLHSMLTVTESEWLSQSVFTCQVEHKGLNYEK 668
S Y S L ++ S+W S S FTCQV H+G EK
Sbjct: 167 SNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEK 203
Score = 52.8 bits (125), Expect = 5e-07
Identities = 33/109 (30%), Positives = 48/109 (44%)
Frame = +3
Query: 1011 GIARHMPSVYVLPPAPEELSLQEWASVTCLVKGFSPADVFVQWLQKGEPVSADKYVTSXX 1190
G + P+V + PP+PEELS + A++ CL+ F P V V W G ++ +
Sbjct: 106 GQPKAAPTVTLFPPSPEELSTNK-ATLVCLISDFYPGAVTVTWKAGGTTITQGVDTSQPS 164
Query: 1191 XXXXXXXXXXSYFVQSVLTVSAKDWSDGETYTCVVGHEALPHTVTERTV 1337
Y S L +SA DW +TC V H+ E+TV
Sbjct: 165 KQSNN-----KYAASSYLALSASDWKSSSGFTCQVTHQG---NTVEKTV 205
>ref|XP_003360139.1| PREDICTED: t-cell receptor beta chain T17T-22-like [Sus scrofa].
Length = 308
Score = 56.2 bits (134), Expect = 5e-08
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Frame = +3
Query: 330 GTKSMSIAGTIIKEQPPVLNIFIPTRESFSSTPQRTSKLICQASDFSPKQISMAWFRDGK 509
GT+ +++ + + +PP + +F P+ S T + T L+C A+ F P + ++W+ +GK
Sbjct: 125 GTR-LTVLEDLQQVRPPKVAVFEPSEAEISRTQKAT--LVCLATGFYPDHVELSWWVNGK 181
Query: 510 RVVSGVSTGPVETLQSSP----VTYRLHSMLTVTESEWLS-QSVFTCQVEHKGL----NY 662
+V SGVST ++ + P +Y L S L VT + W + ++ F CQV+ GL +
Sbjct: 182 QVQSGVST-DLQPYREDPSRNDSSYCLSSRLRVTAAFWHNPRNHFRCQVQFYGLTEDDEW 240
Query: 663 EKNASSLCTSN 695
E N + T N
Sbjct: 241 EYNWTKPITQN 251
>ref|NP_001107166.1| SLA class II histocompatibility antigen, DQ haplotype C beta chain
precursor [Sus scrofa].
Length = 261
Score = 49.3 bits (116), Expect = 6e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +3
Query: 444 LICQASDFSPKQISMAWFRDGKRVVSGVSTGPVETLQSSPVTYRLHSMLTVTESEWLSQS 623
L+C +DF P Q+ + WFR+G+ +GV + P+ +++ TY+ +L + E
Sbjct: 147 LVCAVTDFYPSQVKVQWFRNGQEETAGVVSTPL--IRNGDWTYQ---VLVMLEMNLQRGD 201
Query: 624 VFTCQVEHKGL 656
V+TC+VEH L
Sbjct: 202 VYTCRVEHSSL 212
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,570,962
Number of extensions: 912653
Number of successful extensions: 4205
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4151
Number of HSP's successfully gapped: 10
Length of query: 524
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 420
Effective length of database: 8,754,644
Effective search space: 3676950480
Effective search space used: 3676950480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001388
(1573 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894379.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 252 5e-64
gb|GL895656.1| Sus scrofa unplaced genomic scaffold chrU_scaffold42 82 1e-12
gb|GL896545.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 66 6e-08
>gb|GL894379.1| Sus scrofa unplaced genomic scaffold chrU_scaffold305
Length = 460
Score = 252 bits (127), Expect = 5e-64
Identities = 253/295 (85%)
Strand = Plus / Minus
Query: 62 tctcttccccctcgtctcctgtgtcagcccccagtccgatgacatcctggtggcactggg 121
||||||||||||||||||||| |||||||||| ||||||||| | ||||||||| |||||
Sbjct: 460 tctcttccccctcgtctcctgcgtcagccccccgtccgatgagagcctggtggccctggg 401
Query: 122 ctgactggccctggacttcttgcccagctccttcaatttctcctgtgactactcgagcag 181
||| ||||||| ||||||| ||||||||||| ||| |||||||| ||||| || |||
Sbjct: 400 ctgcctggcccgggacttcctgcccagctccgtcaccttctcctggaactacaagaacag 341
Query: 182 cacccaggtctgcagcccgaacttcagatacttcccgtcgatcccgagaagaggaaagta 241
|| | ||||| |||||| |||| || |||||||||| ||| |||| | || |||||
Sbjct: 340 cagcaaggtcagcagccagaacatccaggacttcccgtccgtcctgagaggcggcaagta 281
Query: 242 cttgggctcctcgcggatgctcctacactctgtgatgatcccgcaggagccagaggcctt 301
||||| |||||| ||| ||||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 280 cttggcctcctcccgggtgctcctaccctctgtgagcatcccccaggacccagaggcctt 221
Query: 302 cctggtgtgcgaggtcctgcaccccagtggcaccaagtccatgtccatcgctggg 356
||||||||||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct: 220 cctggtgtgcgaggtccagcaccccagtggcaccaagtccgtgtccatctctggg 166
Score = 137 bits (69), Expect = 2e-29
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 367 aggagcagccccccgtcttgaacatcttcatccccacccgggagtccttctccagtactc 426
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 73 aggagcagccccccgtcttgaacatcttcgtccccacccgggagtccttctccagtactc 14
Query: 427 cccagcgcacgtc 439
|||||||||||||
Sbjct: 13 cccagcgcacgtc 1
>gb|GL895656.1| Sus scrofa unplaced genomic scaffold chrU_scaffold42
Length = 116
Score = 81.8 bits (41), Expect = 1e-12
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 38 ctcagatagccagtctgccccgaatctcttccccctcgtctcctg 82
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ctcagagagccagtctgccccgaatctcttccccctcgtctcctg 112
>gb|GL896545.1| Sus scrofa unplaced genomic scaffold chrU_scaffold875
Length = 2000
Score = 65.9 bits (33), Expect = 6e-08
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 46 gccagtctgccccgaatctcttccccctcgtctcctg 82
||||||||||||||| |||||||||||||||||||||
Sbjct: 41 gccagtctgccccgagtctcttccccctcgtctcctg 5
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,179,838
Number of extensions: 247
Number of successful extensions: 247
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 4
Length of query: 1573
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1551
Effective length of database: 2,808,408,574
Effective search space: 4355841698274
Effective search space used: 4355841698274
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)