Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001401
(986 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068589.1| elongation factor 2 [Bos taurus]. 567 e-162
Alignment gi|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein c... 273 1e-73
Alignment gi|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding ... 104 1e-22
Alignment gi|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding ... 104 1e-22
Alignment gi|XP_606001.5| PREDICTED: elongation factor Tu GTP binding dom... 91 2e-18
Alignment gi|NP_001193078.1| elongation factor G, mitochondrial [Bos taur... 52 1e-06
Alignment gi|XP_002685002.1| PREDICTED: G elongation factor, mitochondria... 52 1e-06
>ref|NP_001068589.1| elongation factor 2 [Bos taurus].
Length = 858
Score = 567 bits (1461), Expect = e-162
Identities = 275/278 (98%), Positives = 277/278 (99%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE
Sbjct: 581 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 640
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 362
WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV
Sbjct: 641 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 700
Query: 363 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 542
RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY
Sbjct: 701 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 760
Query: 543 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 722
GVLNRKRGHVFEE+QVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL
Sbjct: 761 GVLNRKRGHVFEETQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 820
Query: 723 PGDPFDNTSRPSQVVAKTRKRKGLKEGIPALDNFLGKL 836
PGDPFDNTSRPSQVVA+TRKRKGLKEGIPALDNFL KL
Sbjct: 821 PGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858
>ref|NP_001076865.1| 116 kDa U5 small nuclear ribonucleoprotein component [Bos taurus].
Length = 972
Score = 273 bits (699), Expect = 1e-73
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 664 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 723
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 724 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 783
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 784 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 843
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 844 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 903
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 904 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 947
>ref|XP_002696653.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
isoform 2 [Bos taurus].
Length = 1078
Score = 104 bits (259), Expect = 1e-22
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 917 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKE 975
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 737
GT MF++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 976 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1035
Query: 738 ----DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1036 GEKADSENQARKYMNAVRKRKGL 1058
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 42/164 (25%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGE---------VSARQELKQR 155
E + +SN L +PNK L ++A P P+ + + +++ S+ E K
Sbjct: 679 EGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEESSDLIRSMEQLTSSLNEGKNN 738
Query: 156 ARYLAEKYEWDVAEAR-----------------KIWCFGPDGTGPNILTD---------- 254
+ + +K + + E + +IW FGP GPNIL +
Sbjct: 739 PQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFHNSVW 798
Query: 255 ------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRF 368
+K ++ +S+V+GFQ AT G +CEE + GV F
Sbjct: 799 TGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCF 842
>ref|XP_002696652.1| PREDICTED: elongation factor Tu GTP binding domain containing 1
isoform 1 [Bos taurus].
Length = 1129
Score = 104 bits (259), Expect = 1e-22
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 968 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKE 1026
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 737
GT MF++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 1027 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1086
Query: 738 ----DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1087 GEKADSENQARKYMNAVRKRKGL 1109
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 42/164 (25%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGE---------VSARQELKQR 155
E + +SN L +PNK L ++A P P+ + + +++ S+ E K
Sbjct: 730 EGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEESSDLIRSMEQLTSSLNEGKNN 789
Query: 156 ARYLAEKYEWDVAEAR-----------------KIWCFGPDGTGPNILTD---------- 254
+ + +K + + E + +IW FGP GPNIL +
Sbjct: 790 PQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFHNSVW 849
Query: 255 ------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRF 368
+K ++ +S+V+GFQ AT G +CEE + GV F
Sbjct: 850 TGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCF 893
>ref|XP_606001.5| PREDICTED: elongation factor Tu GTP binding domain containing 1,
partial [Bos taurus].
Length = 1107
Score = 90.5 bits (223), Expect = 2e-18
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 978 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKE 1036
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQI 719
GT MF++KA LPV ESFGF ++R T G A PQ VF HW++
Sbjct: 1037 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEV 1078
Score = 52.8 bits (125), Expect = 5e-07
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 42/164 (25%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGE---------VSARQELKQR 155
E + +SN L +PNK L ++A P P+ + + +++ S+ E K
Sbjct: 740 EGIQVDSNGLITMMTPNKLATLSVRALPLPEEVTQILEESSDLIRSMEQLTSSLNEGKNN 799
Query: 156 ARYLAEKYEWDVAEAR-----------------KIWCFGPDGTGPNILTD---------- 254
+ + +K + + E + +IW FGP GPNIL +
Sbjct: 800 PQMIHQKTQEKIWEFKGKLEHHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFHNSVW 859
Query: 255 ------ITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRF 368
+K ++ +S+V+GFQ AT G +CEE + GV F
Sbjct: 860 TGLDGKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCF 903
>ref|NP_001193078.1| elongation factor G, mitochondrial [Bos taurus].
Length = 753
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/145 (25%), Positives = 65/145 (44%)
Frame = +3
Query: 249 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQII 428
+D T G + +V GF A ++G L + G+RF + D H + I
Sbjct: 572 SDETFGSNVPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHM--VDSNEISFI 629
Query: 429 PTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMF 608
L ++ ++EPI VE+ P + G + +NR+ G + + + F
Sbjct: 630 RAGEGALKQALANTALCILEPIMSVEVIAPNEFQGPVIAGINRRHGVITGQDGIED--YF 687
Query: 609 VVKAYLPVNESFGFTADLRSNTGGQ 683
+ A +P+N FG++ +LRS T G+
Sbjct: 688 TLYADVPLNNMFGYSTELRSCTEGK 712
>ref|XP_002685002.1| PREDICTED: G elongation factor, mitochondrial 1 [Bos taurus].
Length = 753
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/145 (25%), Positives = 65/145 (44%)
Frame = +3
Query: 249 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQII 428
+D T G + +V GF A ++G L + G+RF + D H + I
Sbjct: 572 SDETFGSNVPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHM--VDSNEISFI 629
Query: 429 PTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMF 608
L ++ ++EPI VE+ P + G + +NR+ G + + + F
Sbjct: 630 RAGEGALKQALANTALCILEPIMSVEVIAPNEFQGPVIAGINRRHGVITGQDGIED--YF 687
Query: 609 VVKAYLPVNESFGFTADLRSNTGGQ 683
+ A +P+N FG++ +LRS T G+
Sbjct: 688 TLYADVPLNNMFGYSTELRSCTEGK 712
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,877,309
Number of extensions: 1491871
Number of successful extensions: 6795
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6763
Number of HSP's successfully gapped: 10
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001401
(986 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2... 568 e-162
Alignment gi|XP_852913.1| PREDICTED: similar to Elongation factor 2 (EF-2... 387 e-108
Alignment gi|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ... 273 1e-73
Alignment gi|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP ... 103 3e-22
Alignment gi|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP ... 103 3e-22
Alignment gi|XP_855380.1| PREDICTED: similar to Elongation factor 2 (EF-2... 83 5e-19
Alignment gi|XP_852019.1| PREDICTED: similar to elongation factor Tu GTP ... 61 1e-09
Alignment gi|XP_534320.2| PREDICTED: similar to G elongation factor, mito... 56 6e-08
Alignment gi|XP_854837.1| PREDICTED: similar to TCDD-inducible poly(ADP-r... 55 8e-08
>ref|XP_533949.2| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis familiaris].
Length = 698
Score = 568 bits (1463), Expect = e-162
Identities = 275/278 (98%), Positives = 277/278 (99%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE
Sbjct: 421 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 480
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 362
WDVAEARKIWCFGPDGTGPN+LTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV
Sbjct: 481 WDVAEARKIWCFGPDGTGPNVLTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 540
Query: 363 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 542
RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY
Sbjct: 541 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 600
Query: 543 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 722
GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL
Sbjct: 601 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 660
Query: 723 PGDPFDNTSRPSQVVAKTRKRKGLKEGIPALDNFLGKL 836
PGDPFDNTSRPSQVVA+TRKRKGLKEGIPALDNFL KL
Sbjct: 661 PGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 698
>ref|XP_852913.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis
familiaris].
Length = 569
Score = 387 bits (994), Expect = e-108
Identities = 189/206 (91%), Positives = 193/206 (93%)
Frame = +3
Query: 75 KARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTD 254
+ARPFPDGLAEDIDKGEVSA QELKQ+ARYLAEKYEWDVAEARKIWCFGPDGTG NILTD
Sbjct: 364 EARPFPDGLAEDIDKGEVSAHQELKQQARYLAEKYEWDVAEARKIWCFGPDGTGTNILTD 423
Query: 255 ITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPT 434
ITKGVQYLNEIK+SVVAGFQWATKEGALCEEN+ GVRF HDVTLH DAIHRGGGQIIP
Sbjct: 424 ITKGVQYLNEIKNSVVAGFQWATKEGALCEENISGVRFHEHDVTLHVDAIHRGGGQIIPI 483
Query: 435 ARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVV 614
AR CLY SVLTAQP LMEPIYLVEIQCPEQVVGGIY VLNRK GHVFEESQVAGTPMFVV
Sbjct: 484 ARHCLYTSVLTAQPWLMEPIYLVEIQCPEQVVGGIYDVLNRKLGHVFEESQVAGTPMFVV 543
Query: 615 KAYLPVNESFGFTADLRSNTGGQAFP 692
KAYLPVNESFGFTADLRSNT GQAFP
Sbjct: 544 KAYLPVNESFGFTADLRSNTSGQAFP 569
>ref|XP_548058.2| PREDICTED: similar to 116 kDa U5 small nuclear ribonucleoprotein
component (U5 snRNP-specific protein, 116 kDa) (U5-116
kDa) (Elongation factor Tu GTP binding domain protein 2)
[Canis familiaris].
Length = 972
Score = 273 bits (699), Expect = 1e-73
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 664 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 723
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 724 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 783
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 784 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 843
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 844 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 903
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 904 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 947
>ref|XP_536210.2| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 isoform 5 [Canis familiaris].
Length = 1077
Score = 103 bits (257), Expect = 3e-22
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 916 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKE 974
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 737
GT MF++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 975 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1034
Query: 738 ----DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1035 GEKADSENQARKYMNAVRKRKGL 1057
>ref|XP_850111.1| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 isoform 6 [Canis familiaris].
Length = 1128
Score = 103 bits (257), Expect = 3e-22
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 967 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKE 1025
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 737
GT MF++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 1026 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1085
Query: 738 ----DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1086 GEKADSENQARKYMNAVRKRKGL 1108
>ref|XP_855380.1| PREDICTED: similar to Elongation factor 2 (EF-2) [Canis
familiaris].
Length = 201
Score = 83.2 bits (204), Expect(2) = 5e-19
Identities = 47/98 (47%), Positives = 60/98 (61%)
Frame = +3
Query: 330 GALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEI 509
G C+EN+RGV FD +DV L+ D I PT + S+L +PI+ E+
Sbjct: 103 GLPCQENVRGVGFDFYDVALYKDTI--------PTTPP-VAPSLLQHTDSRHQPIHPAEL 153
Query: 510 QCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAY 623
Q E++ GG+Y V NRK GHVFEESQVAGT M +VKAY
Sbjct: 154 QRLEELAGGLYSVFNRKEGHVFEESQVAGTSMCIVKAY 191
Score = 30.0 bits (66), Expect(2) = 5e-19
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 266 CAVPQRDQGQRGGWLPVG 319
C VP + +G GGW+PVG
Sbjct: 86 CTVPWQRKGDHGGWMPVG 103
>ref|XP_852019.1| PREDICTED: similar to elongation factor Tu GTP binding domain
containing 1 [Canis familiaris].
Length = 198
Score = 61.2 bits (147), Expect = 1e-09
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Frame = +3
Query: 543 GVLNRKRGHVFEESQVAGTPMFVVKAY---LPVNESFGFTADLRSNTGGQAFPQCVFDHW 713
G+ ++ G V +E GT F+ + LPV ESFGF +R G A Q VF HW
Sbjct: 76 GLKGKREGRVLQEEMKEGTDTFINNMFITVLPVVESFGFADGIRKQMNGVASRQLVFSHW 135
Query: 714 QILPGDPF----------------DNTSRPSQVVAKTRKRKGL 794
+I+P DPF D+ ++ + + RKRKGL
Sbjct: 136 EIIPSDPFWVLTTEKEYLHFGEKADSENQAGKYMNAVRKRKGL 178
>ref|XP_534320.2| PREDICTED: similar to G elongation factor, mitochondrial 1 [Canis
familiaris].
Length = 771
Score = 55.8 bits (133), Expect = 6e-08
Identities = 39/145 (26%), Positives = 67/145 (46%)
Frame = +3
Query: 249 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQII 428
+D T G + +V GF A ++G L + G+RF + D H + I
Sbjct: 590 SDETFGANVPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHM--VDSNEISFI 647
Query: 429 PTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMF 608
L ++ A ++EPI VE+ P + G + +NR+ G + + + F
Sbjct: 648 RAGEGALKQALANATLCILEPIMSVEVIAPNEFQGQVIAGINRRHGVITGQDGIED--YF 705
Query: 609 VVKAYLPVNESFGFTADLRSNTGGQ 683
+ A +P+NE FG++ +LRS T G+
Sbjct: 706 TLYADVPLNEMFGYSTELRSCTEGK 730
>ref|XP_854837.1| PREDICTED: similar to TCDD-inducible poly(ADP-ribose) polymerase
[Canis familiaris].
Length = 999
Score = 55.5 bits (132), Expect = 8e-08
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDID 116
+TVSE+SNVLCL K PNK N+ YMKA PFP+ LAE+I+
Sbjct: 12 KTVSEKSNVLCLPKYPNKCNQQYMKAWPFPESLAENIN 49
Score = 52.8 bits (125), Expect = 5e-07
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +3
Query: 570 VFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDP---FD 740
V E+S V P + K +++ F L N GQ L G F+
Sbjct: 14 VSEKSNVLCLPKYPNKCNQQYMKAWPFPESLAENINGQDGHPSGAQAAVPLSGREVSWFN 73
Query: 741 NTSRPSQVVAKTRKRKGLKEGIPALDNFLGKLT 839
NTS PSQ+VA+T K KGLK GI ALDNFL KL+
Sbjct: 74 NTSHPSQLVAETSKHKGLKGGILALDNFLDKLS 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,713,524
Number of extensions: 1524803
Number of successful extensions: 6773
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6746
Number of HSP's successfully gapped: 11
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001401
(986 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001952.1| elongation factor 2 [Homo sapiens]. 566 e-162
Alignment gi|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein c... 273 1e-73
Alignment gi|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein comp... 273 1e-73
Alignment gi|NP_001035700.1| elongation factor Tu GTP-binding domain-cont... 103 2e-22
Alignment gi|NP_078856.4| elongation factor Tu GTP-binding domain-contain... 103 2e-22
Alignment gi|NP_079272.4| elongation factor G, mitochondrial precursor [H... 57 3e-08
>ref|NP_001952.1| elongation factor 2 [Homo sapiens].
Length = 858
Score = 566 bits (1460), Expect = e-162
Identities = 275/278 (98%), Positives = 277/278 (99%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE
Sbjct: 581 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 640
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 362
WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV
Sbjct: 641 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 700
Query: 363 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 542
RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY
Sbjct: 701 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 760
Query: 543 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 722
GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL
Sbjct: 761 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 820
Query: 723 PGDPFDNTSRPSQVVAKTRKRKGLKEGIPALDNFLGKL 836
PGDPFDN+SRPSQVVA+TRKRKGLKEGIPALDNFL KL
Sbjct: 821 PGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858
>ref|NP_001136077.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo
sapiens].
Length = 937
Score = 273 bits (699), Expect = 1e-73
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 629 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 688
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 689 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 748
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 749 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 808
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 809 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 868
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 869 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 912
>ref|NP_004238.3| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo
sapiens].
Length = 972
Score = 273 bits (699), Expect = 1e-73
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 664 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 723
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 724 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 783
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 784 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 843
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 844 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 903
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 904 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 947
>ref|NP_001035700.1| elongation factor Tu GTP-binding domain-containing protein 1 isoform
2 [Homo sapiens].
Length = 1069
Score = 103 bits (257), Expect = 2e-22
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 908 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKE 966
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 737
GT MF++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 967 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1026
Query: 738 ----DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1027 GEKADSENQARKYMNAVRKRKGL 1049
>ref|NP_078856.4| elongation factor Tu GTP-binding domain-containing protein 1 isoform
1 [Homo sapiens].
Length = 1120
Score = 103 bits (257), Expect = 2e-22
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Frame = +3
Query: 417 GQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVA 593
GQ+I T + C YA + Q RLM +Y +I V+G +Y VL+++ G V +E
Sbjct: 959 GQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKE 1017
Query: 594 GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF------------ 737
GT MF++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 1018 GTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHF 1077
Query: 738 ----DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1078 GEKADSENQARKYMNAVRKRKGL 1100
>ref|NP_079272.4| elongation factor G, mitochondrial precursor [Homo sapiens].
Length = 751
Score = 56.6 bits (135), Expect = 3e-08
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 1/182 (0%)
Frame = +3
Query: 249 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQII 428
+D T G + +V GF A ++G L + G+RF + D H + I
Sbjct: 570 SDETFGSNIPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHM--VDSNEISFI 627
Query: 429 PTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMF 608
L ++ A ++EPI VE+ P + G + +NR+ G + + V F
Sbjct: 628 RAGEGALKQALANATLCILEPIMAVEVVAPNEFQGQVIAGINRRHGVITGQDGVED--YF 685
Query: 609 VVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQ-ILPGDPFDNTSRPSQVVAKTRKR 785
+ A +P+N+ FG++ +LRS T G+ + +Q LP D ++ + + +
Sbjct: 686 TLYADVPLNDMFGYSTELRSCTEGKGEYTMEYSRYQPCLPSTQEDVINKYLEATGQLPVK 745
Query: 786 KG 791
KG
Sbjct: 746 KG 747
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,767,104
Number of extensions: 1496418
Number of successful extensions: 6989
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6941
Number of HSP's successfully gapped: 8
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001401
(986 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031933.1| elongation factor 2 [Mus musculus]. 564 e-161
Alignment gi|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein c... 273 1e-73
Alignment gi|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein comp... 273 1e-73
Alignment gi|NP_001153144.1| elongation factor Tu GTP-binding domain-cont... 119 5e-27
Alignment gi|NP_780526.2| elongation factor Tu GTP-binding domain-contain... 119 5e-27
Alignment gi|NP_613057.2| elongation factor G, mitochondrial precursor [M... 53 4e-07
>ref|NP_031933.1| elongation factor 2 [Mus musculus].
Length = 858
Score = 564 bits (1454), Expect = e-161
Identities = 274/278 (98%), Positives = 276/278 (99%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELK RARYLAEKYE
Sbjct: 581 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYE 640
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 362
WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV
Sbjct: 641 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 700
Query: 363 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 542
RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY
Sbjct: 701 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 760
Query: 543 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 722
GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL
Sbjct: 761 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 820
Query: 723 PGDPFDNTSRPSQVVAKTRKRKGLKEGIPALDNFLGKL 836
PGDPFDN+SRPSQVVA+TRKRKGLKEGIPALDNFL KL
Sbjct: 821 PGDPFDNSSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858
>ref|NP_001103465.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform b [Mus
musculus].
Length = 972
Score = 273 bits (699), Expect = 1e-73
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 664 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 723
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 724 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 783
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 784 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 843
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 844 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 903
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 904 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 947
>ref|NP_035561.1| 116 kDa U5 small nuclear ribonucleoprotein component isoform a [Mus
musculus].
Length = 971
Score = 273 bits (699), Expect = 1e-73
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 663 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 722
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 723 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 782
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 783 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 842
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 843 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 902
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 903 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 946
>ref|NP_001153144.1| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
musculus].
Length = 1127
Score = 119 bits (297), Expect = 5e-27
Identities = 85/287 (29%), Positives = 121/287 (42%), Gaps = 90/287 (31%)
Frame = +3
Query: 204 KIWCFGPDGTGPNILTDITKGVQY----------------LNEIKDSVVAGFQWATKEGA 335
+IW FGP GPNIL ++ Q + +S+V+GFQ AT G
Sbjct: 822 QIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGP 881
Query: 336 LCEENMRGVRFDVHDVTLH-------ADAIHRG--------------------------- 413
+CEE + GV F + L+ +D H+G
Sbjct: 882 MCEEPLMGVCFVLEKWELNKCAEQGASDKQHQGQCDLAGEGQGGGKTCHVGDENQEQQDV 941
Query: 414 -----------------------GGQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPE 521
GQ+I T + C YA + Q RLM +Y +I
Sbjct: 942 CSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATS 1000
Query: 522 QVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCV 701
V+G +Y VL+++ G V +E GT MF++KA LPV ESFGF ++R T G A PQ V
Sbjct: 1001 DVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLV 1060
Query: 702 FDHWQILPGDPF----------------DNTSRPSQVVAKTRKRKGL 794
F HW+++P DPF D+ ++ + + RKRKGL
Sbjct: 1061 FSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107
>ref|NP_780526.2| elongation factor Tu GTP-binding domain-containing protein 1 [Mus
musculus].
Length = 1127
Score = 119 bits (297), Expect = 5e-27
Identities = 85/287 (29%), Positives = 121/287 (42%), Gaps = 90/287 (31%)
Frame = +3
Query: 204 KIWCFGPDGTGPNILTDITKGVQY----------------LNEIKDSVVAGFQWATKEGA 335
+IW FGP GPNIL ++ Q + +S+V+GFQ AT G
Sbjct: 822 QIWSFGPRKCGPNILVSRSEDFQNSVWSGPAGRESKEASRFRDFGNSIVSGFQLATLSGP 881
Query: 336 LCEENMRGVRFDVHDVTLH-------ADAIHRG--------------------------- 413
+CEE + GV F + L+ +D H+G
Sbjct: 882 MCEEPLMGVCFVLEKWELNKCAEQGASDKQHQGQCDLAGEGQGGGKTCHVGDENQEQQDV 941
Query: 414 -----------------------GGQIIPTARR-CLYASVLTAQPRLMEPIYLVEIQCPE 521
GQ+I T + C YA + Q RLM +Y +I
Sbjct: 942 CSEPFEETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQ-RLMAAMYTCDIMATS 1000
Query: 522 QVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCV 701
V+G +Y VL+++ G V +E GT MF++KA LPV ESFGF ++R T G A PQ V
Sbjct: 1001 DVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLV 1060
Query: 702 FDHWQILPGDPF----------------DNTSRPSQVVAKTRKRKGL 794
F HW+++P DPF D+ ++ + + RKRKGL
Sbjct: 1061 FSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107
>ref|NP_613057.2| elongation factor G, mitochondrial precursor [Mus musculus].
Length = 751
Score = 52.8 bits (125), Expect = 4e-07
Identities = 37/145 (25%), Positives = 66/145 (45%)
Frame = +3
Query: 249 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQII 428
+D T G + +V GF A ++G L + G+RF + D H + I
Sbjct: 570 SDETFGSNVPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHM--VDSNEISFI 627
Query: 429 PTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMF 608
L ++ ++EPI VE+ P + G ++ +NR+ G + + + F
Sbjct: 628 RAGEGALKQALANGTLCIIEPIMSVEVIAPNEFQGTVFAGINRRHGVITGQDGI--EDYF 685
Query: 609 VVKAYLPVNESFGFTADLRSNTGGQ 683
+ A +P+N FG++ +LRS T G+
Sbjct: 686 TLYADVPLNNMFGYSTELRSCTEGK 710
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,400,281
Number of extensions: 1236872
Number of successful extensions: 6142
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6110
Number of HSP's successfully gapped: 6
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001401
(986 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa]. 568 e-162
Alignment gi|XP_003354054.1| PREDICTED: elongation factor 2-like [Sus scr... 522 e-148
Alignment gi|XP_003354053.1| PREDICTED: elongation factor 2-like [Sus scr... 522 e-148
Alignment gi|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucl... 273 8e-74
Alignment gi|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 273 8e-74
Alignment gi|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucl... 273 8e-74
Alignment gi|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding ... 118 6e-27
Alignment gi|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding ... 118 6e-27
Alignment gi|XP_003358691.1| PREDICTED: elongation factor G, mitochondria... 57 2e-08
>ref|XP_003354050.1| PREDICTED: elongation factor 2 [Sus scrofa].
Length = 858
Score = 568 bits (1464), Expect = e-162
Identities = 276/278 (99%), Positives = 277/278 (99%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE
Sbjct: 581 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 640
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 362
WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV
Sbjct: 641 WDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGV 700
Query: 363 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 542
RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY
Sbjct: 701 RFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIY 760
Query: 543 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 722
GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL
Sbjct: 761 GVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQIL 820
Query: 723 PGDPFDNTSRPSQVVAKTRKRKGLKEGIPALDNFLGKL 836
PGDPFDNTSRPSQVVA+TRKRKGLKEGIPALDNFL KL
Sbjct: 821 PGDPFDNTSRPSQVVAETRKRKGLKEGIPALDNFLDKL 858
>ref|XP_003354054.1| PREDICTED: elongation factor 2-like [Sus scrofa].
Length = 255
Score = 522 bits (1344), Expect = e-148
Identities = 253/255 (99%), Positives = 254/255 (99%)
Frame = +3
Query: 72 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 251
MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT
Sbjct: 1 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 60
Query: 252 DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 431
DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP
Sbjct: 61 DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 120
Query: 432 TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 611
TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV
Sbjct: 121 TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 180
Query: 612 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAKTRKRKG 791
VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVA+TRKRKG
Sbjct: 181 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG 240
Query: 792 LKEGIPALDNFLGKL 836
LKEGIPALDNFL KL
Sbjct: 241 LKEGIPALDNFLDKL 255
>ref|XP_003354053.1| PREDICTED: elongation factor 2-like [Sus scrofa].
Length = 255
Score = 522 bits (1344), Expect = e-148
Identities = 253/255 (99%), Positives = 254/255 (99%)
Frame = +3
Query: 72 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 251
MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT
Sbjct: 1 MKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILT 60
Query: 252 DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 431
DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP
Sbjct: 61 DITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIP 120
Query: 432 TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 611
TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV
Sbjct: 121 TARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFV 180
Query: 612 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAKTRKRKG 791
VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVA+TRKRKG
Sbjct: 181 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPFDNTSRPSQVVAETRKRKG 240
Query: 792 LKEGIPALDNFLGKL 836
LKEGIPALDNFL KL
Sbjct: 241 LKEGIPALDNFLDKL 255
>ref|XP_003131381.2| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
isoform 2 [Sus scrofa].
Length = 924
Score = 273 bits (699), Expect = 8e-74
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 616 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 675
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 676 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 735
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 736 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 795
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 796 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 855
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 856 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 899
>ref|XP_003358060.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component [Sus
scrofa].
Length = 972
Score = 273 bits (699), Expect = 8e-74
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 664 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 723
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 724 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 783
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 784 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 843
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 844 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 903
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 904 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 947
>ref|XP_003131380.1| PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component
isoform 1 [Sus scrofa].
Length = 972
Score = 273 bits (699), Expect = 8e-74
Identities = 134/284 (47%), Positives = 182/284 (64%), Gaps = 16/284 (5%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYE 182
ETV E S++ C +++PNK N++ M A P GLAEDI+ V K+ + KY+
Sbjct: 664 ETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYD 723
Query: 183 WDVAEARKIWCFGPDGTGPNILTDITKGVQY----LNEIKDSVVAGFQWATKEGALCEEN 350
WD+ AR IW FGPD TGPNIL D T + L +KDS+V GFQW T+EG LC+E
Sbjct: 724 WDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEL 783
Query: 351 MRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVV 530
+R V+F + D + + +HRGGGQIIPTARR +Y++ L A PRLMEP Y VE+Q P V
Sbjct: 784 IRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCV 843
Query: 531 GGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 710
+Y VL R+RGHV +++ + G+P++ +KA++P +SFGF DLR++T GQAF VF H
Sbjct: 844 SAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHH 903
Query: 711 WQILPGDPFDNT--SRP----------SQVVAKTRKRKGLKEGI 806
WQI+PGDP D + RP + + KTR+RKGL E +
Sbjct: 904 WQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDV 947
>ref|XP_003361188.1| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
1-like isoform 2 [Sus scrofa].
Length = 1069
Score = 118 bits (295), Expect = 6e-27
Identities = 95/379 (25%), Positives = 152/379 (40%), Gaps = 115/379 (30%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGE--VSARQELK------QRA 158
E + +S +PNK L ++A P P+ + + +++ + + ++L +
Sbjct: 671 EGIQVDSXXXXXXTTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNT 730
Query: 159 RYLAEKYEWDVAEAR-----------------KIWCFGPDGTGPNILTDIT--------- 260
+ + +K + + E + +IW FGP GPNIL + +
Sbjct: 731 QVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWT 790
Query: 261 ----KGVQYLNEIKD---SVVAGFQWATKEGALCEENMRGVRFDVHDVTL---------- 389
K Q N +D S+V+GFQ AT G +CEE + GV F + L
Sbjct: 791 GPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASD 850
Query: 390 -----HADAIHRGGGQ-------------------------------------------I 425
+D + G G+ +
Sbjct: 851 KQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQL 910
Query: 426 IPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPM 605
I T + ++ RLM +Y +I V+G +Y VL+++ G V +E GT M
Sbjct: 911 IATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDM 970
Query: 606 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF---------------- 737
F++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 971 FIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKA 1030
Query: 738 DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1031 DSENQARKYMNAVRKRKGL 1049
>ref|XP_003361187.1| PREDICTED: elongation factor Tu GTP-binding domain-containing protein
1-like isoform 1 [Sus scrofa].
Length = 1120
Score = 118 bits (295), Expect = 6e-27
Identities = 95/379 (25%), Positives = 152/379 (40%), Gaps = 115/379 (30%)
Frame = +3
Query: 3 ETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGE--VSARQELK------QRA 158
E + +S +PNK L ++A P P+ + + +++ + + ++L +
Sbjct: 722 EGIQVDSXXXXXXTTPNKLATLCVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGKNT 781
Query: 159 RYLAEKYEWDVAEAR-----------------KIWCFGPDGTGPNILTDIT--------- 260
+ + +K + + E + +IW FGP GPNIL + +
Sbjct: 782 QVIHQKTQEKIGEFKGRLEQHLTGRKWRNTVDQIWSFGPRKCGPNILVNKSEDFQNSVWT 841
Query: 261 ----KGVQYLNEIKD---SVVAGFQWATKEGALCEENMRGVRFDVHDVTL---------- 389
K Q N +D S+V+GFQ AT G +CEE + GV F + L
Sbjct: 842 GPDGKASQEANRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQTASD 901
Query: 390 -----HADAIHRGGGQ-------------------------------------------I 425
+D + G G+ +
Sbjct: 902 KQNQKQSDLVDAGQGEGETSSAGDENQEVHNGCSEPFEKRPSQKGESSLTDCYGPFSGQL 961
Query: 426 IPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPM 605
I T + ++ RLM +Y +I V+G +Y VL+++ G V +E GT M
Sbjct: 962 IATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDM 1021
Query: 606 FVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF---------------- 737
F++KA LPV ESFGF ++R T G A PQ VF HW+I+P DPF
Sbjct: 1022 FIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKA 1081
Query: 738 DNTSRPSQVVAKTRKRKGL 794
D+ ++ + + RKRKGL
Sbjct: 1082 DSENQARKYMNAVRKRKGL 1100
>ref|XP_003358691.1| PREDICTED: elongation factor G, mitochondrial-like [Sus scrofa].
Length = 754
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/145 (27%), Positives = 67/145 (46%)
Frame = +3
Query: 249 TDITKGVQYLNEIKDSVVAGFQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQII 428
+D T G + +V GF A ++G L + G+RF + D H + I
Sbjct: 573 SDETFGANVPKQFVPAVEKGFLDACEKGPLSGHKLSGLRFVLQDGAHHM--VDSNEISFI 630
Query: 429 PTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMF 608
L ++ A ++EPI VE+ P + G + +NR+ G + + V F
Sbjct: 631 RAGEGALKQALANATVCILEPIMSVEVIAPNEFQGPVIAGINRRHGVITGQDGVED--YF 688
Query: 609 VVKAYLPVNESFGFTADLRSNTGGQ 683
V A +P+N+ FG++ +LRS T G+
Sbjct: 689 TVYAEVPLNDMFGYSTELRSCTEGK 713
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,626,543
Number of extensions: 961126
Number of successful extensions: 4307
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4279
Number of HSP's successfully gapped: 11
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001401
(986 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 654 0.0
Sscrofa_Chr06 117 1e-23
Sscrofa_Chr01 62 6e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 654 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 1 gtgagactgtcagtgaggagtcaaatgtgctctgcttgtctaagtcccccaacaagcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298721 gtgagactgtcagtgaggagtcaaatgtgctctgcttgtctaagtcccccaacaagcaca 75298780
Query: 61 acaggctatacatgaaagcaaggcctttccctgacggcctggctgaagacatcgacaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298781 acaggctatacatgaaagcaaggcctttccctgacggcctggctgaagacatcgacaagg 75298840
Query: 121 gagaggtgtctgcccgccaggaactcaagcagcgggcccgctacctagctgagaagtacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298841 gagaggtgtctgcccgccaggaactcaagcagcgggcccgctacctagctgagaagtacg 75298900
Query: 181 agtgggatgtggctgaggcccgcaagatctggtgctttggccctgatggcactggcccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298901 agtgggatgtggctgaggcccgcaagatctggtgctttggccctgatggcactggcccca 75298960
Query: 241 acatcctcactgacatcaccaagggtgtgcagtacctcaacgagatcaaggacagcgtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75298961 acatcctcactgacatcaccaagggtgtgcagtacctcaacgagatcaaggacagcgtgg 75299020
Query: 301 tggctggcttccagtgggccaccaaagagg 330
||||||||||||||||||||||||||||||
Sbjct: 75299021 tggctggcttccagtgggccaccaaagagg 75299050
Score = 367 bits (185), Expect = 8e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 328 agggggcgctgtgtgaggagaacatgcggggtgtgcgatttgatgtccacgatgtgacac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299302 agggggcgctgtgtgaggagaacatgcggggtgtgcgatttgatgtccacgatgtgacac 75299361
Query: 388 tgcacgccgacgccatccaccgtggtggtggccagatcatccctactgcacggcgctgcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299362 tgcacgccgacgccatccaccgtggtggtggccagatcatccctactgcacggcgctgcc 75299421
Query: 448 tttatgccagtgtgctgactgcccagcccaggctcatggagcccatctaccttgtggaga 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299422 tttatgccagtgtgctgactgcccagcccaggctcatggagcccatctaccttgtggaga 75299481
Query: 508 tccag 512
|||||
Sbjct: 75299482 tccag 75299486
Score = 367 bits (185), Expect = 8e-99
Identities = 203/209 (97%)
Strand = Plus / Plus
Query: 645 ggctttactgctgacctgagatccaacacaggcggccaggcctttccccagtgtgtgttc 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300254 ggctttactgctgacctgagatccaacacaggcggccaggcctttccccagtgtgtgttc 75300313
Query: 705 gaccactggcagatcctgcccggggatcccttcgacaacaccagtcgccccagccaggtg 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300314 gaccactggcagatcctgcccggggatcccttcgacaacaccagtcgccccagccaggtg 75300373
Query: 765 gtggcaaagacacgcaagcgcaaaggcctgaaggaaggtattccggccctggacaacttc 824
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300374 gtggcagagacacgcaagcgcaaaggcctgaaggaaggtattccggccctggacaacttc 75300433
Query: 825 ctggggaaattgaccgcggcttctcagca 853
|||| |||||| ||||||||||||||
Sbjct: 75300434 ctggacaaattgtaggcggcttctcagca 75300462
Score = 272 bits (137), Expect = 3e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 510 cagtgtccagaacaagtggttggtggcatttatggtgtcctgaacaggaagcggggccac 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299566 cagtgtccagaacaagtggttggtggcatttatggtgtcctgaacaggaagcggggccac 75299625
Query: 570 gtctttgaggagtcccaggtggctggtacccccatgtttgttgtgaaggcttacttgcct 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75299626 gtctttgaggagtcccaggtggctggtacccccatgtttgttgtgaaggcttacttgcct 75299685
Query: 630 gtcaatgaatcctttgg 646
|||||||||||||||||
Sbjct: 75299686 gtcaatgaatcctttgg 75299702
Score = 250 bits (126), Expect = 1e-63
Identities = 132/134 (98%)
Strand = Plus / Plus
Query: 853 acaagccccccacattctccacgacactttgagactgtccagactcagaaatgctctgcc 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300521 acaagccccccacattctccacgacactttgagactgtccagactcagaaatgctctgcc 75300580
Query: 913 tgacaggtttctggggcccacttcgtgccatcactcaacatgaacacttgatgccgtttc 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75300581 tgacaggtttctggggcccacttcgtgccatcactcaacatgaacacttgatgccgtttc 75300640
Query: 973 tttcataatttatt 986
||||| |||||||
Sbjct: 75300641 tttcaatatttatt 75300654
Score = 125 bits (63), Expect = 5e-26
Identities = 93/103 (90%)
Strand = Plus / Minus
Query: 884 agactgtccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccat 943
||||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||
Sbjct: 104659450 agactgtccagactcagtaatgctctgcctgacaggtttctggggtccactccatgccat 104659391
Query: 944 cactcaacatgaacacttgatgccgtttctttcataatttatt 986
|||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 104659390 tgctcagcatgaacacttgatgccatttctttcaatatttatt 104659348
>Sscrofa_Chr06
|| Length = 157765593
Score = 117 bits (59), Expect = 1e-23
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 884 agactgtccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccat 943
|||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||
Sbjct: 135080577 agactgcccagactcagcaatgctctgcttgacaggtttctggggcccactctgtgccat 135080636
Query: 944 cactcaacatgaacacttgatgccgtttctttcataatttatt 986
||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 135080637 cactcaacaagaacacttgatgtaatttctttcaatatttatt 135080679
Score = 117 bits (59), Expect = 1e-23
Identities = 92/103 (89%)
Strand = Plus / Minus
Query: 884 agactgtccagactcagaaatgctctgcctgacaggtttctggggcccacttcgtgccat 943
|||||| |||||||||| |||||||||| |||||||||||||||||||||| |||||||
Sbjct: 135248655 agactgcccagactcagcaatgctctgcttgacaggtttctggggcccactctgtgccat 135248596
Query: 944 cactcaacatgaacacttgatgccgtttctttcataatttatt 986
||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 135248595 cactcaacaagaacacttgatgtaatttctttcaatatttatt 135248553
>Sscrofa_Chr01
|| Length = 315321322
Score = 61.9 bits (31), Expect = 6e-07
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 490 ccatctaccttgtggagatccagtgtccagaacaagtggttggtggcatttatggtgtcc 549
|||||||||| |||| ||||||||||||| | |||| ||| |||||||| || ||||||
Sbjct: 221246667 ccatctacctggtggggatccagtgtccacagcaagaggtgggtggcatctacagtgtcc 221246608
Query: 550 tgaacaggaagcggg 564
|| |||||||||||
Sbjct: 221246607 cgagcaggaagcggg 221246593
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,799,555
Number of extensions: 120
Number of successful extensions: 120
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 9
Length of query: 986
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 965
Effective length of database: 2,808,413,156
Effective search space: 2710118695540
Effective search space used: 2710118695540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)