Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001402
(1384 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029455.1| multivesicular body subunit 12A [Bos taurus]. 487 e-138
Alignment gi|XP_002691631.1| PREDICTED: hypothetical protein LOC617416 [B... 138 1e-32
Alignment gi|XP_874761.4| PREDICTED: hypothetical protein LOC617416 [Bos ... 127 3e-29
>ref|NP_001029455.1| multivesicular body subunit 12A [Bos taurus].
Length = 273
Score = 487 bits (1254), Expect = e-138
Identities = 241/267 (90%), Positives = 245/267 (91%)
Frame = +3
Query: 264 MDPGPGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKTFAQKSGYFLCLNPLG 443
MDPGPG + PLAGLAWSSASAPPPRGFSAISCTVEG PASFGKTFAQKSGYFLCLNPLG
Sbjct: 1 MDPGPGANGMPLAGLAWSSASAPPPRGFSAISCTVEGTPASFGKTFAQKSGYFLCLNPLG 60
Query: 444 SLENPQENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVF 623
SLENPQENVVVDIQILVDKSPLPPGFSPVCDP+DSKASVSKKKRMCVKLVPLG ADTAVF
Sbjct: 61 SLENPQENVVVDIQILVDKSPLPPGFSPVCDPLDSKASVSKKKRMCVKLVPLGAADTAVF 120
Query: 624 DVRLSGKTKTVPGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
D+RLSGKTKTVPGYLRVGDMGGFAIWC LSRD+RDLSLD P QPSKG
Sbjct: 121 DIRLSGKTKTVPGYLRVGDMGGFAIWCRKAKAPRPVPKPRALSRDVRDLSLDSPGQPSKG 180
Query: 804 GFPERTLSRLGSRASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA 983
GFPERTLSRLGSRASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA
Sbjct: 181 GFPERTLSRLGSRASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA 240
Query: 984 DLTIKSLADIEEEYNYGFVVEKTAAAR 1064
DLTIKSLADIE EYNYGFVVEKTAAAR
Sbjct: 241 DLTIKSLADIEAEYNYGFVVEKTAAAR 267
>ref|XP_002691631.1| PREDICTED: hypothetical protein LOC617416 [Bos taurus].
Length = 304
Score = 138 bits (347), Expect = 1e-32
Identities = 95/279 (34%), Positives = 137/279 (49%), Gaps = 16/279 (5%)
Frame = +3
Query: 276 PGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKT--FAQKSGYFLCLNPLGSL 449
P T P+ G+ ++ P G+ ++ T +G A K F K +LC S
Sbjct: 28 PETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSK 87
Query: 450 ENPQ-ENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFD 626
EN NV+VD++++ K LP GF P+ + VD++ +KKR+C+K +P + A+ D
Sbjct: 88 ENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICD 147
Query: 627 VRLSGKTKTV-PGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
+R+ G+TK P Y +G++ IW + R R+ QP+ PS
Sbjct: 148 IRIMGRTKQAPPQYTFIGELNSMGIW-------------YRMGRVPRNHDSSQPTTPSPS 194
Query: 804 GF---PERTLSRLGS-------RASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKS 953
P L R S R R D Y+ SNLY ISAMDGVPF + +F S
Sbjct: 195 SVASTPAPNLPRHISLTLPATFRGRNSTRADYEYQHSNLYAISAMDGVPFMISEKF---S 251
Query: 954 CGPLAFSAF--ADLTIKSLADIEEEYNYGFVVEKTAAAR 1064
C P + F +TIKSLA+IE+EY Y F E++AAAR
Sbjct: 252 CVPESMQPFDLLGITIKSLAEIEKEYEYSFRTEQSAAAR 290
>ref|XP_874761.4| PREDICTED: hypothetical protein LOC617416 [Bos taurus].
Length = 602
Score = 127 bits (318), Expect = 3e-29
Identities = 89/253 (35%), Positives = 126/253 (49%), Gaps = 16/253 (6%)
Frame = +3
Query: 354 ISCTVEGAPASFGKT--FAQKSGYFLCLNPLGSLENPQ-ENVVVDIQILVDKSPLPPGFS 524
++ T +G A K F K +LC S EN NV+VD++++ K LP GF
Sbjct: 352 VAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFI 411
Query: 525 PVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFDVRLSGKTKTV-PGYLRVGDMGGFAIW 701
P+ + VD++ +KKR+C+K +P + A+ D+R+ G+TK P Y +G++ IW
Sbjct: 412 PIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIW 471
Query: 702 CXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKGGF---PERTLSRLGS-------RAST 851
+ R R+ QP+ PS P L R S R
Sbjct: 472 -------------YRMGRVPRNHDSSQPTTPSPSSVASTPAPNLPRHISLTLPATFRGRN 518
Query: 852 LRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAF--ADLTIKSLADIEEEY 1025
R D Y+ SNLY ISAMDGVPF + +F SC P + F +TIKSLA+IE+EY
Sbjct: 519 STRADYEYQHSNLYAISAMDGVPFMISEKF---SCVPESMQPFDLLGITIKSLAEIEKEY 575
Query: 1026 NYGFVVEKTAAAR 1064
Y F E++AAAR
Sbjct: 576 EYSFRTEQSAAAR 588
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,460,071
Number of extensions: 1926317
Number of successful extensions: 9249
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9196
Number of HSP's successfully gapped: 3
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001402
(1384 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533879.2| PREDICTED: hypothetical protein XP_533879 [Cani... 493 e-139
Alignment gi|XP_537843.2| PREDICTED: similar to C06A6.3 [Canis familiaris]. 138 1e-32
>ref|XP_533879.2| PREDICTED: hypothetical protein XP_533879 [Canis familiaris].
Length = 311
Score = 493 bits (1268), Expect = e-139
Identities = 245/297 (82%), Positives = 254/297 (85%)
Frame = +3
Query: 264 MDPGPGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKTFAQKSGYFLCLNPLG 443
MDPGPGTD APL GL WSSASAPPPRGFSAISCTVEGAPASFGKTFAQKSGYFLCL+ LG
Sbjct: 1 MDPGPGTDTAPLTGLVWSSASAPPPRGFSAISCTVEGAPASFGKTFAQKSGYFLCLSSLG 60
Query: 444 SLENPQENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVF 623
SLENPQENVV DIQ+LVDKSPLPPGFSPVCDP+DSKASVSKKKRMCVKLVPLG AD AVF
Sbjct: 61 SLENPQENVVADIQVLVDKSPLPPGFSPVCDPLDSKASVSKKKRMCVKLVPLGAADMAVF 120
Query: 624 DVRLSGKTKTVPGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
DVRLSGKTKTVPGYLRVGDMGGFAIWC LSRDMR LSLD P+QPSK
Sbjct: 121 DVRLSGKTKTVPGYLRVGDMGGFAIWCKKAKAPRPVPKPRALSRDMRGLSLDPPAQPSKD 180
Query: 804 GFPERTLSRLGSRASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA 983
GFPERTLSRLGSRASTLRR+DSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA
Sbjct: 181 GFPERTLSRLGSRASTLRRSDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA 240
Query: 984 DLTIKSLADIEEEYNYGFVVEKTAAARXXXXXXXXXXXXRKESRANIPPAPRDWQMP 1154
DLTIKSLADIEEEYNYGFVVEKTAAAR R+ + P P+DWQ+P
Sbjct: 241 DLTIKSLADIEEEYNYGFVVEKTAAARLPPSVSYLFLRPRESPLPSTPDTPQDWQLP 297
>ref|XP_537843.2| PREDICTED: similar to C06A6.3 [Canis familiaris].
Length = 455
Score = 138 bits (348), Expect = 1e-32
Identities = 94/276 (34%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Frame = +3
Query: 276 PGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKT--FAQKSGYFLCLNPLGSL 449
P T P+ G+ ++ P G+ ++ T +G A K F K +LC S
Sbjct: 179 PETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSK 238
Query: 450 ENPQ-ENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFD 626
EN NV+VD++++ K LP GF P+ + VD++ +KKR+C+K +P + A+ D
Sbjct: 239 ENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICD 298
Query: 627 VRLSGKTKTV-PGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
+R+ G+TK P Y +G++ IW + R+ PSQ S
Sbjct: 299 IRIMGRTKQAPPQYTFIGELNSMGIW----------YRMGKVPRNHDSSQPTTPSQSSAA 348
Query: 804 GFPERTLSRLGS-------RASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGP 962
P L R S R R D Y+ SNLY ISAMDGVPF + +F SC P
Sbjct: 349 STPAPNLPRHISLTLPATFRGRNSTRADYEYQHSNLYAISAMDGVPFMISEKF---SCVP 405
Query: 963 LAFSAF--ADLTIKSLADIEEEYNYGFVVEKTAAAR 1064
+ F +TIKSLA+IE+EY Y F E++AAAR
Sbjct: 406 ESMQPFDLLGITIKSLAEIEKEYEYSFRTEQSAAAR 441
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,406,344
Number of extensions: 2006237
Number of successful extensions: 9278
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9226
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001402
(1384 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612410.1| multivesicular body subunit 12A [Homo sapiens]. 459 e-129
Alignment gi|NP_258257.1| multivesicular body subunit 12B isoform 1 [Homo... 139 6e-33
Alignment gi|NP_001011703.1| multivesicular body subunit 12B isoform 2 [H... 86 1e-16
>ref|NP_612410.1| multivesicular body subunit 12A [Homo sapiens].
Length = 273
Score = 459 bits (1182), Expect = e-129
Identities = 230/267 (86%), Positives = 239/267 (89%)
Frame = +3
Query: 264 MDPGPGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKTFAQKSGYFLCLNPLG 443
MDP PGTD+APLAGLAWSSASAPPPRGFSAISCTVEGAPASFGK+FAQKSGYFLCL+ LG
Sbjct: 1 MDPVPGTDSAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKSFAQKSGYFLCLSSLG 60
Query: 444 SLENPQENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVF 623
SLENPQENVV DIQI+VDKSPLP GFSPVCDP+DSKASVSKKKRMCVKL+PLG DTAVF
Sbjct: 61 SLENPQENVVADIQIVVDKSPLPLGFSPVCDPMDSKASVSKKKRMCVKLLPLGATDTAVF 120
Query: 624 DVRLSGKTKTVPGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
DVRLSGKTKTVPGYLR+GDMGGFAIWC LSRDM+ LSLD SQPSKG
Sbjct: 121 DVRLSGKTKTVPGYLRIGDMGGFAIWCKKAKAPRPVPKPRGLSRDMQGLSLDAASQPSKG 180
Query: 804 GFPERTLSRLGSRASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFA 983
G ERT SRLGSRASTLRRNDSIYEAS+LYGISAMDGVPFTLHPRFEGKSC PLAFSAF
Sbjct: 181 GLLERTASRLGSRASTLRRNDSIYEASSLYGISAMDGVPFTLHPRFEGKSCSPLAFSAFG 240
Query: 984 DLTIKSLADIEEEYNYGFVVEKTAAAR 1064
DLTIKSLADIEEEYNYGFVVEKTAAAR
Sbjct: 241 DLTIKSLADIEEEYNYGFVVEKTAAAR 267
>ref|NP_258257.1| multivesicular body subunit 12B isoform 1 [Homo sapiens].
Length = 319
Score = 139 bits (350), Expect = 6e-33
Identities = 94/276 (34%), Positives = 135/276 (48%), Gaps = 13/276 (4%)
Frame = +3
Query: 276 PGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKT--FAQKSGYFLCLNPLGSL 449
P T P+ G+ ++ P G+ ++ T +G A K F K +LC S
Sbjct: 43 PETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSK 102
Query: 450 ENPQ-ENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFD 626
EN NV+VD++++ K LP GF P+ + VD++ +KKR+C+K +P + A+ D
Sbjct: 103 ENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICD 162
Query: 627 VRLSGKTKTV-PGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
+R+ G+TK P Y +G++ IW + R+ PSQ S
Sbjct: 163 IRIMGRTKQAPPQYTFIGELNSMGIW----------YRMGRVPRNHDSSQPTTPSQSSAA 212
Query: 804 GFPERTLSRLGS-------RASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGP 962
P L R S R R D Y+ SNLY ISAMDGVPF + +F SC P
Sbjct: 213 STPAPNLPRHISLTLPATFRGRNSTRTDYEYQHSNLYAISAMDGVPFMISEKF---SCVP 269
Query: 963 LAFSAF--ADLTIKSLADIEEEYNYGFVVEKTAAAR 1064
+ F +TIKSLA+IE+EY Y F E++AAAR
Sbjct: 270 ESMQPFDLLGITIKSLAEIEKEYEYSFRTEQSAAAR 305
>ref|NP_001011703.1| multivesicular body subunit 12B isoform 2 [Homo sapiens].
Length = 221
Score = 85.5 bits (210), Expect = 1e-16
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Frame = +3
Query: 276 PGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKT--FAQKSGYFLCLNPLGSL 449
P T P+ G+ ++ P G+ ++ T +G A K F K +LC S
Sbjct: 43 PETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSK 102
Query: 450 ENPQ-ENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFD 626
EN NV+VD++++ K LP GF P+ + VD++ +KKR+C+K +P + A+ D
Sbjct: 103 ENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICD 162
Query: 627 VRLSGKTKTV-PGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSK 800
+R+ G+TK P Y +G++ IW + R R+ QP+ PS+
Sbjct: 163 IRIMGRTKQAPPQYTFIGELNSMGIW-------------YRMGRVPRNHDSSQPTTPSQ 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 61,682,725
Number of extensions: 1925022
Number of successful extensions: 8546
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8488
Number of HSP's successfully gapped: 3
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001402
(1384 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082893.1| multivesicular body subunit 12A [Mus musculus]. 411 e-115
Alignment gi|NP_780393.2| multivesicular body subunit 12B [Mus musculus]. 138 1e-32
>ref|NP_082893.1| multivesicular body subunit 12A [Mus musculus].
Length = 271
Score = 411 bits (1057), Expect = e-115
Identities = 206/263 (78%), Positives = 222/263 (84%)
Frame = +3
Query: 276 PGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKTFAQKSGYFLCLNPLGSLEN 455
PGTD+APLAGL WSSASAPPP GFSAI+CTVEG ASFG+ FAQK+GYFLCL+ LG EN
Sbjct: 3 PGTDSAPLAGLVWSSASAPPPPGFSAITCTVEGGTASFGRGFAQKAGYFLCLSTLGIPEN 62
Query: 456 PQENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFDVRL 635
PQ+NVVVD+QI++DK PLP GFS V DP D KASVSKKKRMCVKL+PLG AD V DV+L
Sbjct: 63 PQDNVVVDMQIVMDKGPLPSGFSAVNDPQDIKASVSKKKRMCVKLMPLGTADVVVSDVKL 122
Query: 636 SGKTKTVPGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKGGFPE 815
SGKTKTVPGYLRVGD+GGFAIWC LS+DMR LSLD P +PSKG PE
Sbjct: 123 SGKTKTVPGYLRVGDIGGFAIWCKKSKAPRPVPKPRTLSQDMRGLSLDPPKEPSKGSHPE 182
Query: 816 RTLSRLGSRASTLRRNDSIYEASNLYGISAMDGVPFTLHPRFEGKSCGPLAFSAFADLTI 995
RTLSRLGSRASTLRR DSIYEAS+LYGISAMDGVPFTLHPRFEGKSCGPL SAF DLTI
Sbjct: 183 RTLSRLGSRASTLRRTDSIYEASSLYGISAMDGVPFTLHPRFEGKSCGPLNLSAFGDLTI 242
Query: 996 KSLADIEEEYNYGFVVEKTAAAR 1064
KSLADIE+EYNYGFVVEKTAAAR
Sbjct: 243 KSLADIEKEYNYGFVVEKTAAAR 265
>ref|NP_780393.2| multivesicular body subunit 12B [Mus musculus].
Length = 317
Score = 138 bits (347), Expect = 1e-32
Identities = 96/276 (34%), Positives = 138/276 (50%), Gaps = 13/276 (4%)
Frame = +3
Query: 276 PGTDAAPLAGLAWSSASAPPPRGFSAISCTVEGAPASFGKT--FAQKSGYFLCLNPLGSL 449
P T P+ G+ ++ P G+ ++ T +G A K F K +LC S
Sbjct: 41 PETPMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSK 100
Query: 450 ENPQ-ENVVVDIQILVDKSPLPPGFSPVCDPVDSKASVSKKKRMCVKLVPLGVADTAVFD 626
EN NV+VD++++ K LP GF P+ + VD++ V +KKR+C+K +P + A+ D
Sbjct: 101 ENSHLGNVLVDMKLIDVKDTLPVGFIPIQETVDTQEVVFRKKRLCIKFIPRDSTEAAICD 160
Query: 627 VRLSGKTKTV-PGYLRVGDMGGFAIWCXXXXXXXXXXXXXXLSRDMRDLSLDQPSQPSKG 803
+R+ G+TK P Y +G++ IW + R+ PSQ S
Sbjct: 161 IRIMGRTKQAPPQYTFIGELNSMGIW----------YRMGRVPRNHDSSQPTTPSQSSAS 210
Query: 804 GFPERTLSR---LGSRASTLRRN----DSIYEASNLYGISAMDGVPFTLHPRFEGKSCGP 962
P L R L A+ RN D Y+ SNLY ISAMDGVPF + +F SC P
Sbjct: 211 STPAPNLPRHISLTLPATFRGRNNTSTDYEYQLSNLYAISAMDGVPFMISEKF---SCIP 267
Query: 963 LAFSAF--ADLTIKSLADIEEEYNYGFVVEKTAAAR 1064
+ F +TIKSLA+IE+EY Y F E++AAAR
Sbjct: 268 ESMQPFDLLGITIKSLAEIEKEYEYSFRTEQSAAAR 303
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,597,256
Number of extensions: 1579593
Number of successful extensions: 7125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7053
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001402
(1384 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,214,363
Number of extensions: 1255811
Number of successful extensions: 5920
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5905
Number of HSP's successfully gapped: 0
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001402
(1384 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,826,000
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 0
Length of query: 1384
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1363
Effective length of database: 2,808,413,156
Effective search space: 3827867131628
Effective search space used: 3827867131628
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)