Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001409
(1623 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like... 327 2e-89
Alignment gi|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like... 327 2e-89
Alignment gi|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like... 325 9e-89
Alignment gi|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like is... 325 9e-89
Alignment gi|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus]. 318 7e-87
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 161 1e-39
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 161 1e-39
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 161 1e-39
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 161 1e-39
Alignment gi|NP_001073729.1| GTPase, IMAP family member 5-like [Bos tauru... 150 4e-36
>ref|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 310
Score = 327 bits (837), Expect = 2e-89
Identities = 165/256 (64%), Positives = 194/256 (75%)
Frame = +3
Query: 177 GTMKLTLGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFD 356
G ++ +G +K PRDEEN +G ++ ++ALQE KS+TGNSIL RKHF
Sbjct: 7 GFFQVIMGGRKMPRDEENAYGFQEFRSALQERRLRLLLAGRSGTGKSATGNSILQRKHFL 66
Query: 357 SRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXX 536
SRL T+VTR+CA S WA WDV+VLDTPDLFS EVA+ DP KERGRCY
Sbjct: 67 SRLATTAVTRACATGSCCWASWDVEVLDTPDLFSPEVAQADPGFKERGRCYLLSAPGPHA 126
Query: 537 XXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQAL 716
VTQLGRFTAQD QAWRGVKALFG G++AH +VVFTR+EDL GSLQ YVRD++N+AL
Sbjct: 127 VLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVVVFTRREDLDGGSLQQYVRDTDNRAL 186
Query: 717 RQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGV 896
R+LVAECGGR CAF+NRA E+EAQV ELM LVE+LVRD GGAPYTNDVYRLAQ LGG+
Sbjct: 187 RELVAECGGRCCAFDNRAADGEREAQVGELMGLVEELVRDHGGAPYTNDVYRLAQTLGGL 246
Query: 897 SPEERLRKVAERVAQK 944
SPEERLR+VAER+A +
Sbjct: 247 SPEERLRRVAERLAAR 262
>ref|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 310
Score = 327 bits (837), Expect = 2e-89
Identities = 165/256 (64%), Positives = 194/256 (75%)
Frame = +3
Query: 177 GTMKLTLGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFD 356
G ++ +G +K PRDEEN +G ++ ++ALQE KS+TGNSIL RKHF
Sbjct: 7 GFFQVIMGGRKMPRDEENAYGFQEFRSALQERRLRLLLAGRSGTGKSATGNSILQRKHFL 66
Query: 357 SRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXX 536
SRL T+VTR+CA S WA WDV+VLDTPDLFS EVA+ DP KERGRCY
Sbjct: 67 SRLATTAVTRACATGSCCWASWDVEVLDTPDLFSPEVAQADPGFKERGRCYLLSAPGPHA 126
Query: 537 XXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQAL 716
VTQLGRFTAQD QAWRGVKALFG G++AH +VVFTR+EDL GSLQ YVRD++N+AL
Sbjct: 127 VLLVTQLGRFTAQDLQAWRGVKALFGAGIAAHAVVVFTRREDLDGGSLQQYVRDTDNRAL 186
Query: 717 RQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGV 896
R+LVAECGGR CAF+NRA E+EAQV ELM LVE+LVRD GGAPYTNDVYRLAQ LGG+
Sbjct: 187 RELVAECGGRCCAFDNRAADGEREAQVGELMGLVEELVRDHGGAPYTNDVYRLAQTLGGL 246
Query: 897 SPEERLRKVAERVAQK 944
SPEERLR+VAER+A +
Sbjct: 247 SPEERLRRVAERLAAR 262
>ref|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 298
Score = 325 bits (832), Expect = 9e-89
Identities = 164/250 (65%), Positives = 191/250 (76%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K PRDEEN +G ++ ++ALQE KS+TGNSIL RKHF SRL T
Sbjct: 1 MGGRKMPRDEENAYGFQEFRSALQERRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATT 60
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
+VTR+CA S WA WDV+VLDTPDLFS EVA+ DP KERGRCY VTQ
Sbjct: 61 AVTRACATGSCCWASWDVEVLDTPDLFSPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQ 120
Query: 555 LGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAE 734
LGRFTAQD QAWRGVKALFG G++AH +VVFTR+EDL GSLQ YVRD++N+ALR+LVAE
Sbjct: 121 LGRFTAQDLQAWRGVKALFGAGIAAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAE 180
Query: 735 CGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERL 914
CGGR CAF+NRA E+EAQV ELM LVE+LVRD GGAPYTNDVYRLAQ LGG+SPEERL
Sbjct: 181 CGGRCCAFDNRAADGEREAQVGELMGLVEELVRDHGGAPYTNDVYRLAQTLGGLSPEERL 240
Query: 915 RKVAERVAQK 944
R+VAER+A +
Sbjct: 241 RRVAERLAAR 250
>ref|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 298
Score = 325 bits (832), Expect = 9e-89
Identities = 164/250 (65%), Positives = 191/250 (76%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K PRDEEN +G ++ ++ALQE KS+TGNSIL RKHF SRL T
Sbjct: 1 MGGRKMPRDEENAYGFQEFRSALQERRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATT 60
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
+VTR+CA S WA WDV+VLDTPDLFS EVA+ DP KERGRCY VTQ
Sbjct: 61 AVTRACATGSCCWASWDVEVLDTPDLFSPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQ 120
Query: 555 LGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAE 734
LGRFTAQD QAWRGVKALFG G++AH +VVFTR+EDL GSLQ YVRD++N+ALR+LVAE
Sbjct: 121 LGRFTAQDLQAWRGVKALFGAGIAAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAE 180
Query: 735 CGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERL 914
CGGR CAF+NRA E+EAQV ELM LVE+LVRD GGAPYTNDVYRLAQ LGG+SPEERL
Sbjct: 181 CGGRCCAFDNRAADGEREAQVGELMGLVEELVRDHGGAPYTNDVYRLAQTLGGLSPEERL 240
Query: 915 RKVAERVAQK 944
R+VAER+A +
Sbjct: 241 RRVAERLAAR 250
>ref|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus].
Length = 294
Score = 318 bits (816), Expect = 7e-87
Identities = 162/250 (64%), Positives = 189/250 (75%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K RDEEN +G ++ ++ALQE KS+TGNSIL RKHF SRL T
Sbjct: 1 MGGRKVARDEENAYGFQEFRSALQERRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATT 60
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
+VTR+CA S WA WDV+VLDTPDLFS EVA+ DP KERGRCY VTQ
Sbjct: 61 AVTRACATGSCCWASWDVEVLDTPDLFSPEVAQADPGFKERGRCYLLSAPGPHAVLLVTQ 120
Query: 555 LGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAE 734
LGRFTAQD QAWRGVKALFG G++A +VVFTR+EDL GSLQ YVRD++N+ALR+LVAE
Sbjct: 121 LGRFTAQDLQAWRGVKALFGAGIAARAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAE 180
Query: 735 CGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERL 914
CGGR CAF+NRA E+EAQV ELM LVE+LVRD GGAPYTNDVYRLAQ LGG+SPEERL
Sbjct: 181 CGGRCCAFDNRAADGEREAQVRELMGLVEELVRDHGGAPYTNDVYRLAQTLGGLSPEERL 240
Query: 915 RKVAERVAQK 944
R+VAER+A +
Sbjct: 241 RRVAERLAAR 250
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 161 bits (408), Expect = 1e-39
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 7/221 (3%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
+S+TGNSIL + F+S+L A +VTR C A+G W + V+DTP +F +E A+ +
Sbjct: 54 RSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAE-AQDQEVYE 112
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY VTQLGRFT QD A VK +FG G + +++FT KEDL
Sbjct: 113 NIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGG 172
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM ++E L ++ G
Sbjct: 173 GSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVF 232
Query: 852 YTNDVYRLAQAL-------GGVSPEERLRKVAERVAQKQQG 953
TN+++ AQ L G L KV +VA+++QG
Sbjct: 233 LTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 273
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 307
Score = 161 bits (408), Expect = 1e-39
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 7/221 (3%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
+S+TGNSIL + F+S+L A +VTR C A+G W + V+DTP +F +E A+ +
Sbjct: 40 RSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAE-AQDQEVYE 98
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY VTQLGRFT QD A VK +FG G + +++FT KEDL
Sbjct: 99 NIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGG 158
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM ++E L ++ G
Sbjct: 159 GSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVF 218
Query: 852 YTNDVYRLAQAL-------GGVSPEERLRKVAERVAQKQQG 953
TN+++ AQ L G L KV +VA+++QG
Sbjct: 219 LTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 259
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 161 bits (408), Expect = 1e-39
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 7/221 (3%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
+S+TGNSIL + F+S+L A +VTR C A+G W + V+DTP +F +E A+ +
Sbjct: 54 RSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAE-AQDQEVYE 112
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY VTQLGRFT QD A VK +FG G + +++FT KEDL
Sbjct: 113 NIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGG 172
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM ++E L ++ G
Sbjct: 173 GSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVF 232
Query: 852 YTNDVYRLAQAL-------GGVSPEERLRKVAERVAQKQQG 953
TN+++ AQ L G L KV +VA+++QG
Sbjct: 233 LTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 273
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 161 bits (408), Expect = 1e-39
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 7/221 (3%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
+S+TGNSIL + F+S+L A +VTR C A+G W + V+DTP +F +E A+ +
Sbjct: 40 RSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAE-AQDQEVYE 98
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY VTQLGRFT QD A VK +FG G + +++FT KEDL
Sbjct: 99 NIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGG 158
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL +YV +++N LR+LV ECG R CAFNNRA G EQ Q+ +LM ++E L ++ G
Sbjct: 159 GSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVF 218
Query: 852 YTNDVYRLAQAL-------GGVSPEERLRKVAERVAQKQQG 953
TN+++ AQ L G L KV +VA+++QG
Sbjct: 219 LTNELFSDAQMLLQMGGDAHGEGQRRYLNKVRLQVAKQRQG 259
>ref|NP_001073729.1| GTPase, IMAP family member 5-like [Bos taurus].
Length = 297
Score = 150 bits (378), Expect = 4e-36
Identities = 85/211 (40%), Positives = 123/211 (58%), Gaps = 3/211 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
+S+T NSIL + F+S+L A SVTR C A+G W + V+D P +F S A+ +
Sbjct: 29 ESATRNSILSQPMFESKLGAQSVTRKCQRATGTWNGRSILVVDMPPIFESR-AQDQEVYE 87
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY VTQLG FT QD A VK +FG G + +++FT KEDLA
Sbjct: 88 NIGACYLLSVPGPHVLLLVTQLGHFTKQDVVAMTRVKEVFGAGAERYMVILFTHKEDLAG 147
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL +Y+ +++N LR LV +C R CAFNN A+G EQ Q+ +LM ++E L R+ GA
Sbjct: 148 GSLDEYMANTDNLRLRSLVQKCRRRYCAFNNWASGDEQRGQLAQLMAVIEGLEREHQGAF 207
Query: 852 YTNDVY---RLAQALGGVSPEERLRKVAERV 935
TN+++ ++ Q +GG + E R+ ++V
Sbjct: 208 LTNELFFDAQMLQQMGGGAHGEGQRRYLDKV 238
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,923,843
Number of extensions: 1308653
Number of successful extensions: 5515
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5460
Number of HSP's successfully gapped: 24
Length of query: 541
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 434
Effective length of database: 14,140,958
Effective search space: 6137175772
Effective search space used: 6137175772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001409
(1623 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 245 1e-64
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 186 7e-47
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 155 8e-38
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 136 7e-32
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 135 1e-31
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 132 1e-30
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 122 1e-27
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 245 bits (625), Expect = 1e-64
Identities = 126/209 (60%), Positives = 148/209 (70%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILG + F SRL A VTR+CA+ S RWA W V+V DTPDLFS+E R D C
Sbjct: 102 KSATGNSILGHRSFPSRLAAAPVTRTCALGSRRWAGWRVEVTDTPDLFSAEGRRADRGCA 161
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
ERGRCY VTQLGRFTAQD+QA RGV+ LFG GV A +VVFTR+EDLA
Sbjct: 162 ERGRCYLLSAPGPHALLLVTQLGRFTAQDEQAVRGVRELFGPGVLARAVVVFTRREDLAG 221
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
S DYVR ++N+ALR LVAECGGRVCA +NRA G E+EAQ EL+ L L R+ AP
Sbjct: 222 ASPHDYVRATDNRALRALVAECGGRVCALDNRAEGAEREAQAGELLALAARLAREHADAP 281
Query: 852 YTNDVYRLAQALGGVSPEERLRKVAERVA 938
+TNDVYRLA L G +P+ LR+V ER+A
Sbjct: 282 FTNDVYRLAAELRGAAPDGGLRRVCERLA 310
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 186 bits (471), Expect = 7e-47
Identities = 100/200 (50%), Positives = 130/200 (65%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSIL ++ F+SRL A T++C+ + G W E ++ ++DTPD+FS E +D K
Sbjct: 35 KSATGNSILRKQAFESRLAAQPFTKTCSESQGSWGEREMVIIDTPDMFS-ERDHSDSLYK 93
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RCY VTQLGRFT QDQQ + +K +FG+ V HTIV+FT KEDL
Sbjct: 94 EVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDVMRHTIVLFTHKEDLKG 153
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
SL DY+ D +N+AL +LVA CGGRVCAF+N ATG +++ QV ELM L+EDLV +R G
Sbjct: 154 ESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRDDQVKELMALMEDLVLERRGEH 213
Query: 852 YTNDVYRLAQALGGVSPEER 911
YTN +Y L V ER
Sbjct: 214 YTNGLYGLVTECESVWSRER 233
Score = 172 bits (436), Expect = 8e-43
Identities = 96/192 (50%), Positives = 120/192 (62%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
+S+TGNSIL + F+SRL VT++C +G W + V+DTP LF +E A+T K
Sbjct: 312 RSATGNSILCQPVFESRLGNQPVTKTCQGETGTWNGRSILVVDTPSLFEAE-AQTQELYK 370
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY VT LGRFTAQD A R VK +FG G H +V+FT KEDLA
Sbjct: 371 AIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLFTHKEDLAG 430
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
SL DY+ D++N +LR LV ECG R CAFNNRATG EQ Q+ LM +VE L R+ GGA
Sbjct: 431 ESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERLERETGGAF 490
Query: 852 YTNDVYRLAQAL 887
Y+ND++ AQ L
Sbjct: 491 YSNDLFFQAQLL 502
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 155 bits (393), Expect = 8e-38
Identities = 85/206 (41%), Positives = 125/206 (60%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+T N+ILGR+ FDSR+ A ++T+ C AS W + V+DTP LF ++ D CK
Sbjct: 21 KSATANTILGRQVFDSRIAAHAITKECQKASREWEGRKLLVVDTPGLFDTKET-LDTTCK 79
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RC V QLGR+T ++Q+ +KA+FG H I++FTRK++L +
Sbjct: 80 EISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKPALKHMIMLFTRKDNLED 139
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
SL D++ +S + L+ + ECG R CAFNNRA E+EAQV EL+ L+E +V+ GGA
Sbjct: 140 QSLSDFI-ESADVKLKNITKECGDRYCAFNNRAKEAEKEAQVQELVELIEQMVQSNGGAY 198
Query: 852 YTNDVYRLAQALGGVSPEERLRKVAE 929
+++D+Y+ EERL++ AE
Sbjct: 199 FSDDIYK--------DTEERLKRKAE 216
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 136 bits (342), Expect = 7e-32
Identities = 75/190 (39%), Positives = 112/190 (58%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILG K F S + A SVT+ C S RW ++ V+DTP +F +EV D C+
Sbjct: 44 KSATGNSILGEKVFHSSIAAKSVTKVCKKGSSRWHGRELIVVDTPGIFDTEVQDAD-TCR 102
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E C V LGR+T ++++A + +FG + I++FTRK+DL
Sbjct: 103 EIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQMFGPRARRYMILLFTRKDDLDG 162
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
QDY++D+ ++ +++LV R C FNNRATG EQEAQ +L+ LV+ +V + G
Sbjct: 163 MHFQDYLKDA-SEDIQELVDMFRDRYCVFNNRATGTEQEAQRMQLLTLVQRVVMENEGGC 221
Query: 852 YTNDVYRLAQ 881
YTN +++ A+
Sbjct: 222 YTNKMFQKAE 231
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 135 bits (339), Expect = 1e-31
Identities = 73/140 (52%), Positives = 87/140 (62%)
Frame = +3
Query: 468 ARTDPDCKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVF 647
A+T K G CY VT LGRFTAQD A R VK +FG G H +V+F
Sbjct: 107 AQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLF 166
Query: 648 TRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDL 827
T KEDLA SL DY+ D++N +LR LV ECG R CAFNNRATG EQ Q+ LM +VE L
Sbjct: 167 THKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERL 226
Query: 828 VRDRGGAPYTNDVYRLAQAL 887
R+ GGA Y+ND++ AQ L
Sbjct: 227 ERETGGAFYSNDLFFQAQLL 246
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 132 bits (331), Expect = 1e-30
Identities = 73/183 (39%), Positives = 107/183 (58%), Gaps = 2/183 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGN+ILGR F S+ RA VTR+C + W + +V V+D P L A P
Sbjct: 511 KSATGNTILGRPDFLSQFRAQPVTRTCQSSRRLWGQQEVVVVDMPSLCLMASAEGGPSQL 570
Query: 492 ERG--RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
E RC+ V QLG FT +D++A + ++ +FG+ V +TIV+FTRKEDL
Sbjct: 571 EEEVRRCWSCCKGNKILVL-VFQLGWFTQEDKRAVKELETIFGEEVLKYTIVLFTRKEDL 629
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGG 845
E + DY++++EN+ L+ ++ CGGR+CAFNN+ TG +E Q L+ + L+ GG
Sbjct: 630 -EVDIADYIKNAENRTLQNIIKRCGGRICAFNNKETGQAREDQAAVLLTMANQLIESHGG 688
Query: 846 APY 854
Y
Sbjct: 689 HGY 691
Score = 115 bits (287), Expect = 2e-25
Identities = 73/183 (39%), Positives = 101/183 (55%), Gaps = 2/183 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGN+ILGR F S+ VT+ C S E + V+DTP LFSS D K
Sbjct: 84 KSATGNTILGRSMFVSKFSNQMVTKVCQRESRATGEGTLVVIDTPYLFSSMSPAED---K 140
Query: 492 ERG--RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
+R RC V +G + +D++ GV+ +FG + IVVFTRK+DL
Sbjct: 141 QRNIERCLELCAPSLHVLLLVIAIGCYELEDKEVVCGVQEVFGAEARRYMIVVFTRKDDL 200
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGG 845
S+QDY+ ++ LR+LV CGGR CA NN+ + E+ QV EL+ +V+ LV + GG
Sbjct: 201 EGDSVQDYIEGLDS--LRELVENCGGRYCALNNKGSEEERVGQVRELLGMVQRLVGENGG 258
Query: 846 APY 854
PY
Sbjct: 259 -PY 260
Score = 105 bits (262), Expect = 1e-22
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 7/219 (3%)
Frame = +3
Query: 222 EENPHGSEDLQ--AALQEPXXXXXXXXXXXXXK-----SSTGNSILGRKHFDSRLRATSV 380
E+ PHG +LQ A EP K S+ GNS+LG++ F+++ SV
Sbjct: 283 EDKPHGGGELQRQATGYEPNPGIHELKVLLVGKRGAGKSAAGNSLLGKRVFETKFSEESV 342
Query: 381 TRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLG 560
TR + S W E V ++DTPD+ SS+ D K R + VT LG
Sbjct: 343 TRRFVLESRIWRERRVVIIDTPDISSSK------DIKAELRRH--VFGGPHAFLLVTPLG 394
Query: 561 RFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECG 740
F+ +D+ ++A FGD + I++FTRKEDL + L+ +++ S + AL +L+ +C
Sbjct: 395 SFSKKDEVVLDTLQASFGDKFVEYLIILFTRKEDLGDQDLEMFLK-SRSTALCKLIKKCK 453
Query: 741 GRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYT 857
R C F+ R T E++ Q EL++ V LV+ G P T
Sbjct: 454 DRYCVFSYRVTREEEQHQAEELLQTVVSLVQQHGDRPCT 492
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 122 bits (306), Expect = 1e-27
Identities = 70/149 (46%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILGR+ F SRL VTR SG WA +++V+DTPDL S + P+
Sbjct: 110 KSATGNSILGRREFPSRLSPQPVTRDLQRGSGAWAGRELEVIDTPDLLSPQAG---PEAA 166
Query: 492 ERGRC--YXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
R C VTQLGRFT +D+QA RG++ FG GV AHT++VFTR+EDL
Sbjct: 167 ARAICEAVAFSAPGPHAVLLVTQLGRFTEEDRQAVRGLQEAFGVGVLAHTVLVFTRREDL 226
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVC 752
GSL++YVR ++N L A C R C
Sbjct: 227 GGGSLEEYVRRTDNLHPALLDAVCARRHC 255
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,108,409
Number of extensions: 1184256
Number of successful extensions: 5722
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5698
Number of HSP's successfully gapped: 10
Length of query: 541
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 433
Effective length of database: 15,274,216
Effective search space: 6613735528
Effective search space used: 6613735528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001409
(1623 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 275 7e-74
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 186 4e-47
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 162 8e-40
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 161 1e-39
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 158 2e-38
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 141 2e-33
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 141 2e-33
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 137 2e-32
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 275 bits (704), Expect = 7e-74
Identities = 148/274 (54%), Positives = 186/274 (67%), Gaps = 4/274 (1%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K DEEN +G E+ + QE KS+TGNSILG++ F SRL AT
Sbjct: 1 MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
SVTR+C S RW + V+V+DTPD+FSS+V++TDP C+ERG CY VTQ
Sbjct: 61 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQ 120
Query: 555 LGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAE 734
LGRFTAQDQQA R V+ +FG+ V ++VFTRKEDLA GSL DYV ++EN+ALR+LVAE
Sbjct: 121 LGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 180
Query: 735 CGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERL 914
CGGRVCAF+NRATG EQEAQV +L+ +VE LV + GA Y+N+VY LAQ L PEERL
Sbjct: 181 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERL 240
Query: 915 RKVAERVAQKQQ----GCCLQRFLCEKPKAQRTW 1004
R+VAERVA + Q G L L + K+ R+W
Sbjct: 241 RRVAERVAARVQRRPWGAWLSARLWKWLKSPRSW 274
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 186 bits (473), Expect = 4e-47
Identities = 96/205 (46%), Positives = 136/205 (66%), Gaps = 2/205 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+ GNSIL ++ F+S+L + ++T++C+ + G W ++ ++DTPD+FS + + K
Sbjct: 35 KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK-DHCEALYK 93
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RCY VTQLGR+T+QDQQA + VK +FG+ HTIV+FT KEDL
Sbjct: 94 EVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL DY+ DS+N+AL +LVA CGGR+CAFNNRA G Q+ QV ELM +EDL+ ++ G
Sbjct: 154 GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDH 213
Query: 852 YTNDVYRLAQ--ALGGVSPEERLRK 920
YTN +Y L Q G V +ER+++
Sbjct: 214 YTNGLYSLIQRSKCGPVGSDERVKE 238
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 162 bits (410), Expect = 8e-40
Identities = 113/313 (36%), Positives = 159/313 (50%), Gaps = 7/313 (2%)
Frame = +3
Query: 18 SSVPEHKTASPLTLVKRKQNSDPSQIQPTRRRAPWQRTGTTATW--RWLSPCVP--AGTM 185
+S+P H+ + L+L+ P + R P R TAT R P + G
Sbjct: 160 NSIPAHRRRAGLSLL-------PLHLP---ERGPAARASVTATLEDRAQQPFLERMGGFQ 209
Query: 186 KLTLGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRL 365
+ G + R E+N + P KS+TGNSILG+ F+S+L
Sbjct: 210 RGKYGTMAEGRSEDN--------LSATPPALRIILVGKTGCGKSATGNSILGQPVFESKL 261
Query: 366 RATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXX 545
RA SVTR+C V +G W V V+DTP +F S+ A T K G CY
Sbjct: 262 RAQSVTRTCQVKTGTWNGRKVLVVDTPSIFESQ-ADTQELYKNIGDCYLLSAPGPHVLLL 320
Query: 546 VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQL 725
V QLGRFTAQD A R VK +FG G H +++FT KEDL +L DYV +++N +L+ L
Sbjct: 321 VIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTDNCSLKDL 380
Query: 726 VAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVY---RLAQALGGV 896
V EC R CAFNN + EQ Q EL+ ++E L R+R G+ ++ND++ +L Q G
Sbjct: 381 VRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQLLQRTGAG 440
Query: 897 SPEERLRKVAERV 935
+ +E R+ +V
Sbjct: 441 ACQEDYRQYQAKV 453
Score = 129 bits (323), Expect = 1e-29
Identities = 67/133 (50%), Positives = 84/133 (63%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K DEEN +G E+ + QE KS+TGNSILG++ F SRL AT
Sbjct: 1 MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGAT 60
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
SVTR+C S RW + V+V+DTPD+FSS+V++TDP C+ERG CY VTQ
Sbjct: 61 SVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQ 120
Query: 555 LGRFTAQDQQAWR 593
LGRFTAQDQQA R
Sbjct: 121 LGRFTAQDQQAVR 133
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 161 bits (408), Expect = 1e-39
Identities = 93/211 (44%), Positives = 127/211 (60%), Gaps = 3/211 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILG+ F+S+LRA SVTR+C V +G W V V+DTP +F S+ A T K
Sbjct: 40 KSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIFESQ-ADTQELYK 98
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
G CY V QLGRFTAQD A R VK +FG G H +++FT KEDL
Sbjct: 99 NIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGG 158
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
+L DYV +++N +L+ LV EC R CAFNN + EQ Q EL+ ++E L R+R G+
Sbjct: 159 QALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSF 218
Query: 852 YTNDVY---RLAQALGGVSPEERLRKVAERV 935
++ND++ +L Q G + +E R+ +V
Sbjct: 219 HSNDLFLDAQLLQRTGAGACQEDYRQYQAKV 249
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 158 bits (399), Expect = 2e-38
Identities = 95/216 (43%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVAR--TDPD 485
KS+TGNSILGR F+S+L VT++ S WA +++V+DTP++ S +V+ D
Sbjct: 53 KSATGNSILGRDVFESKLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVADAI 112
Query: 486 CKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
C+ VTQLGRFT +DQQ R ++ +FG GV HTI+VFTRKEDL
Sbjct: 113 CQ----AIVLSAPGPHAVLLVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKEDL 168
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGG 845
A GSL+DYVR++ NQAL L R C FNNRA G EQEAQ+ ELM VE ++ + G
Sbjct: 169 AGGSLEDYVRETNNQALAWLDVTLARRHCGFNNRAQGEEQEAQLRELMEKVEAIMWENEG 228
Query: 846 APYTNDVYRLAQALGGVSPEERLRKVAERVAQKQQG 953
Y+N Y+ Q RL+++ ER + QG
Sbjct: 229 DYYSNKAYQYTQ------QNFRLKELQERQVSQGQG 258
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 141 bits (356), Expect = 2e-33
Identities = 85/208 (40%), Positives = 121/208 (58%), Gaps = 5/208 (2%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILG F SRLRA VT++ W +V V+DTP DP
Sbjct: 451 KSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVDTPSFNQMLDVEKDPSRL 510
Query: 492 ERG--RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
E RC V QLGRFT +D+ A ++A+FG + + I++FTRKEDL
Sbjct: 511 EEEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFTKYAIMLFTRKEDL 570
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRG- 842
G+L+D++++S+N+ALR++ +CG RVCAFNN+ TG QE QV L+ V DL ++ G
Sbjct: 571 GAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNKETGQAQETQVKALLTKVNDLRKESGW 630
Query: 843 -GAPYTND-VYRLAQALGGVSPEERLRK 920
G P+T + V +L + + +S E+L K
Sbjct: 631 SGYPHTQENVSKLIKNVQEMSQAEKLLK 658
Score = 119 bits (298), Expect = 8e-27
Identities = 73/186 (39%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGN+ILG+ F S+ +V + C S E V V+DTPDLFSS D K
Sbjct: 23 KSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVVVIDTPDLFSSIACAED---K 79
Query: 492 ERG--RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
+R C V +G FT +D++ +G++ +FG H I+VFTRK+DL
Sbjct: 80 QRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQVFGAEARRHIIIVFTRKDDL 139
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATG-PEQEAQVTELMRLVEDLVRDRG 842
+ LQD++ +N+ L+QLV + GR C FNN+ EQ QV EL+R VE LV G
Sbjct: 140 GDDLLQDFI--EKNKPLKQLVQDYEGRYCIFNNKTNSKDEQITQVLELLRKVESLVNTNG 197
Query: 843 GAPYTN 860
G + N
Sbjct: 198 GPYHVN 203
Score = 99.0 bits (245), Expect = 1e-20
Identities = 60/177 (33%), Positives = 92/177 (51%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+ GNSILGR+ F + SVT+S S W + V ++D PD+ S + D + +
Sbjct: 260 KSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRKKKVSIIDAPDI--SSLKNIDSEVR 317
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
+ VT LG +T D+ ++ FG+ + I++ TRKEDL +
Sbjct: 318 KH------ICTGPHAFLLVTPLGFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGD 371
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRG 842
L ++R+S N+AL L+ +C R AFN RATG E++ Q EL+ +E +V G
Sbjct: 372 QDLDTFLRNS-NKALYGLIQKCKNRYSAFNYRATGEEEQRQADELLEKIESMVHQNG 427
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 141 bits (355), Expect = 2e-33
Identities = 79/208 (37%), Positives = 123/208 (59%), Gaps = 2/208 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+T N+ILG + FDSR+ A +VT++C AS W D+ V+DTP LF ++ + D CK
Sbjct: 21 KSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVVDTPGLFDTKES-LDTTCK 79
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RC V LGR+T ++Q+ +KA+FG H +++FTRKE+L
Sbjct: 80 EISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKSAMKHMVILFTRKEELEG 139
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNN--RATGPEQEAQVTELMRLVEDLVRDRGG 845
S D++ D++ L+ +V ECG R CAF+N + + E+E+QV EL+ L+E +V+ G
Sbjct: 140 QSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQVQELVELIEKMVQCNEG 198
Query: 846 APYTNDVYRLAQALGGVSPEERLRKVAE 929
A +++D+Y+ EERL++ E
Sbjct: 199 AYFSDDIYK--------DTEERLKQREE 218
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 137 bits (346), Expect = 2e-32
Identities = 84/246 (34%), Positives = 136/246 (55%), Gaps = 22/246 (8%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILGRK F S A S+T+ C S W E ++ V+DTP +F +EV + K
Sbjct: 43 KSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETS-K 101
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RC V LGR+T ++ +A + +FG+ + I++FTRK+DL +
Sbjct: 102 EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD 161
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
+L DY+R++ + ++ L+ G R CA NN+ATG EQEAQ +L+ L++ +VR+
Sbjct: 162 TNLHDYLREAP-EDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGC 220
Query: 852 YTNDVYRLA--------QALGGV--------------SPEERLRKVAERVAQKQQGCCLQ 965
YTN +Y+ A QA+ + EE++RK+ ++V Q+++ ++
Sbjct: 221 YTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREEYEEKIRKLEDKVEQEKRKKQME 280
Query: 966 RFLCEK 983
+ L E+
Sbjct: 281 KKLAEQ 286
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,025,955
Number of extensions: 1141423
Number of successful extensions: 5433
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5373
Number of HSP's successfully gapped: 11
Length of query: 541
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 434
Effective length of database: 14,770,016
Effective search space: 6410186944
Effective search space used: 6410186944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001409
(1623 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 258 7e-69
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 258 7e-69
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 176 6e-44
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 176 6e-44
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 151 2e-36
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 140 4e-33
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 130 4e-30
Alignment gi|NP_997651.1| GTPase IMAP family member 8 [Mus musculus]. 130 4e-30
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 129 5e-30
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 117 2e-26
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 258 bits (660), Expect = 7e-69
Identities = 138/252 (54%), Positives = 169/252 (67%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K RDEE+ +GSED +A Q P KS+TGNSILG+K F SRL A
Sbjct: 1 MGGRKMARDEEDAYGSEDSRAP-QMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAV 59
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
VTRSC +AS WA W V+V+DTPD+FSSE+ RTDP C E RC+ VTQ
Sbjct: 60 PVTRSCTLASRMWAGWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQ 119
Query: 555 LGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAE 734
LGRFT QD QA VK LFG V A T+VVFTR+EDLA SLQDYV ++N+ALR LVAE
Sbjct: 120 LGRFTMQDSQALAAVKRLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAE 179
Query: 735 CGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERL 914
CGGRVCA NNRATG E+EAQ +L+ +V LVR+ GGA Y+N+VY L Q P++++
Sbjct: 180 CGGRVCALNNRATGSEREAQAEQLLGMVACLVREHGGAHYSNEVYELVQDTRCADPQDQV 239
Query: 915 RKVAERVAQKQQ 950
KVAE VA++ Q
Sbjct: 240 AKVAEIVAERMQ 251
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 258 bits (660), Expect = 7e-69
Identities = 138/252 (54%), Positives = 169/252 (67%)
Frame = +3
Query: 195 LGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRAT 374
+G +K RDEE+ +GSED +A Q P KS+TGNSILG+K F SRL A
Sbjct: 1 MGGRKMARDEEDAYGSEDSRAP-QMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAV 59
Query: 375 SVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQ 554
VTRSC +AS WA W V+V+DTPD+FSSE+ RTDP C E RC+ VTQ
Sbjct: 60 PVTRSCTLASRMWAGWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQ 119
Query: 555 LGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAE 734
LGRFT QD QA VK LFG V A T+VVFTR+EDLA SLQDYV ++N+ALR LVAE
Sbjct: 120 LGRFTMQDSQALAAVKRLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAE 179
Query: 735 CGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERL 914
CGGRVCA NNRATG E+EAQ +L+ +V LVR+ GGA Y+N+VY L Q P++++
Sbjct: 180 CGGRVCALNNRATGSEREAQAEQLLGMVACLVREHGGAHYSNEVYELVQDTRCADPQDQV 239
Query: 915 RKVAERVAQKQQ 950
KVAE VA++ Q
Sbjct: 240 AKVAEIVAERMQ 251
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 176 bits (445), Expect = 6e-44
Identities = 104/235 (44%), Positives = 141/235 (60%), Gaps = 13/235 (5%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSIL R F SRLR SVTR+ +G W + V+DTP +F S+ D D K
Sbjct: 39 KSATGNSILRRPAFQSRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMD-K 97
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
+ G CY VTQLGRFTA+D A R VK +FG GV H IV+FTRKEDL E
Sbjct: 98 DIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMIVLFTRKEDLEE 157
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
SL+++V ++N++LR L ECG R CAFNNRA+G EQ+ Q+ ELM LV L ++ G+
Sbjct: 158 KSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQGQLAELMALVRRLEQECEGSF 217
Query: 852 YTNDVYRLAQAL--GGVSPEER-----LRKVAERV------AQKQQGCCLQRFLC 977
++ND++ A+AL G S + L KV + V ++Q+G + + +C
Sbjct: 218 HSNDLFLHAEALLREGYSVHQEAYRCYLAKVRQEVEKQRRELEEQEGSWIAKMIC 272
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 176 bits (445), Expect = 6e-44
Identities = 95/192 (49%), Positives = 126/192 (65%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNS+L R F+SRLR SVTR+ +G W + V+DTP +F S+ D D K
Sbjct: 35 KSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIFESKAQNQDMD-K 93
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
+ G CY VTQLGRFTA+D A R VK +FG GV H IV+FTRKEDLAE
Sbjct: 94 DIGDCYLLCAPGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAE 153
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
SL+++V ++N++LR LV ECG R CAFNNRA+G EQ+ Q+ ELM LV L ++ G+
Sbjct: 154 KSLEEFVTHTDNRSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMALVRRLEQECEGSF 213
Query: 852 YTNDVYRLAQAL 887
++ND++ A+ L
Sbjct: 214 HSNDLFLHAETL 225
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 151 bits (381), Expect = 2e-36
Identities = 86/206 (41%), Positives = 124/206 (60%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+T N+ILG+K F SR+ +VT++C S RW E D+ V+DTP LF ++V + + C
Sbjct: 21 KSATANTILGQKRFVSRIAPHAVTQNCQSDSRRWKERDLLVVDTPGLFDTKV-KLETTCL 79
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RC V QL RFT ++Q+ +KA+FG+ V + IV+FTRK+DL +
Sbjct: 80 EISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEEVMKYMIVLFTRKDDLED 139
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
SL D++ DS+ L+ ++ ECG R A NN+A E+E QV ELM LVE LV++ GG
Sbjct: 140 QSLSDFIADSDTN-LKSIIKECGNRCLAINNKAERAERETQVQELMGLVETLVQNNGGLY 198
Query: 852 YTNDVYRLAQALGGVSPEERLRKVAE 929
+++ VY+ A E RL+K E
Sbjct: 199 FSHPVYKDA--------ERRLKKQVE 216
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 140 bits (352), Expect = 4e-33
Identities = 75/182 (41%), Positives = 115/182 (63%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILGR+ F+S++ A VT + + + +++V+DTPD+FS + P+
Sbjct: 116 KSATGNSILGRQAFESKISARPVTTTFQKGTREFEGKELEVIDTPDIFSPQ---NQPEAT 172
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
+ C V Q+GR+TA+DQ R ++ +FG+ + A+TI+VFTRKEDLAE
Sbjct: 173 AKKICDLLASPGPHAVLLVIQVGRYTAEDQAVARCLQEIFGNTILAYTILVFTRKEDLAE 232
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
GSL++Y++++ N++L L C R C FNN+A G EQEAQ+ +LM VE ++ + G
Sbjct: 233 GSLEEYIQENNNKSLDVLDVACERRHCGFNNKAQGDEQEAQLKKLMEEVELILWENEGHC 292
Query: 852 YT 857
YT
Sbjct: 293 YT 294
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 130 bits (326), Expect = 4e-30
Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEW-DVDVLDTPDLFSSEVARTDPDC 488
KS+TGN+ILGR F S+LRA VT S + + R +W DV V+DTP + DP
Sbjct: 488 KSATGNTILGRSAFFSQLRAQPVTSS-SQSGKRTLDWQDVVVVDTPSFIQTPGTEKDPSR 546
Query: 489 --KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKED 662
+E C V QLGRFT +D+ ++A F + + + IV+FTRKED
Sbjct: 547 LKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKED 606
Query: 663 LAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRD 836
L +G L DY +++N+AL++++ +C GRVCAFNN+ TG +QE QV L+++ L ++
Sbjct: 607 LGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQVKGLLKIANSLKKN 664
Score = 95.1 bits (235), Expect = 1e-19
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGN+ILG+ F+S+ VT C S V V+DTPDLFSS ++ ++ +
Sbjct: 61 KSATGNTILGKAVFESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLFSS-LSCSEVRQQ 119
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
+C VT +G +T +D++ G+ G H IVVFTR+++L E
Sbjct: 120 NLKQCLELLADDHCVLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDE 179
Query: 672 GSLQDYVRDSENQALRQLVAECGG-RVCAFNNRATGPEQEAQVTELMRLVEDLVRD 836
SL +Y+ E +L++L+ G R C FNN+A ++E QV +L+ +E L+ +
Sbjct: 180 DSLWNYIESKE--SLKELIKNIGSRRCCTFNNKADKKQRELQVFKLLDAIELLMME 233
Score = 77.8 bits (190), Expect = 2e-14
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 1/181 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATS-VTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDC 488
KS+ GNSILG++ F ++ VT++ A S W V ++D+P++ S ++
Sbjct: 297 KSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEISSWKL------- 349
Query: 489 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 668
+ VT LG D + +K +FG+ + TIV+FTRKED
Sbjct: 350 -DESAVKNHTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFE 408
Query: 669 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 848
+ +L ++ EN AL L + G R FN RA+ E+++QV +L+ +E +V+
Sbjct: 409 DQALDKVIK--ENDALYNLTQKFGERYAIFNYRASVEEEQSQVGKLLSQIEKMVQCHSNK 466
Query: 849 P 851
P
Sbjct: 467 P 467
>ref|NP_997651.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 130 bits (326), Expect = 4e-30
Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 3/178 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEW-DVDVLDTPDLFSSEVARTDPDC 488
KS+TGN+ILGR F S+LRA VT S + + R +W DV V+DTP + DP
Sbjct: 488 KSATGNTILGRSAFFSQLRAQPVTSS-SQSGKRTLDWQDVVVVDTPSFIQTPGTEKDPSR 546
Query: 489 --KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKED 662
+E C V QLGRFT +D+ ++A F + + + IV+FTRKED
Sbjct: 547 LKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMKYMIVLFTRKED 606
Query: 663 LAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRD 836
L +G L DY +++N+AL++++ +C GRVCAFNN+ TG +QE QV L+++ L ++
Sbjct: 607 LGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNKETGEDQETQVKGLLKIANSLKKN 664
Score = 95.1 bits (235), Expect = 1e-19
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 1/176 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGN+ILG+ F+S+ VT C S V V+DTPDLFSS ++ ++ +
Sbjct: 61 KSATGNTILGKAVFESKFSDHMVTDRCQSESVSVRGKQVIVIDTPDLFSS-LSCSEVRQQ 119
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
+C VT +G +T +D++ G+ G H IVVFTR+++L E
Sbjct: 120 NLKQCLELLADDHCVLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDE 179
Query: 672 GSLQDYVRDSENQALRQLVAECGG-RVCAFNNRATGPEQEAQVTELMRLVEDLVRD 836
SL +Y+ E +L++L+ G R C FNN+A ++E QV +L+ +E L+ +
Sbjct: 180 DSLWNYIESKE--SLKELIKNIGSRRCCTFNNKADKKQRELQVFKLLDAIELLMME 233
Score = 77.8 bits (190), Expect = 2e-14
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 1/181 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATS-VTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDC 488
KS+ GNSILG++ F ++ VT++ A S W V ++D+P++ S ++
Sbjct: 297 KSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEISSWKL------- 349
Query: 489 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 668
+ VT LG D + +K +FG+ + TIV+FTRKED
Sbjct: 350 -DESAVKNHTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKFTIVLFTRKEDFE 408
Query: 669 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 848
+ +L ++ EN AL L + G R FN RA+ E+++QV +L+ +E +V+
Sbjct: 409 DQALDKVIK--ENDALYNLTQKFGERYAIFNYRASVEEEQSQVGKLLSQIEKMVQCHSNK 466
Query: 849 P 851
P
Sbjct: 467 P 467
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 129 bits (325), Expect = 5e-30
Identities = 70/188 (37%), Positives = 112/188 (59%), Gaps = 1/188 (0%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLF-SSEVARTDPDC 488
KS+T N+ILGR+ FDS++ A +VT++C A W ++ V+DTP LF + E +T C
Sbjct: 21 KSATANTILGRRQFDSKICANAVTKTCQRAYREWKGKNLVVVDTPGLFDTKETMKT--TC 78
Query: 489 KERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLA 668
E RC V +L R+T ++Q+ +K LFG+ + I++FT KEDL
Sbjct: 79 FEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAALKYMIILFTHKEDLE 138
Query: 669 EGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGA 848
+ SL ++V D+ + L ++++CG R AFNN+A EQE QV +L+ L E +V GG+
Sbjct: 139 DQSLDNFVSDA-GEKLNNIISQCGKRYLAFNNKAALDEQENQVQQLIELTEKMVAQNGGS 197
Query: 849 PYTNDVYR 872
+++ +Y+
Sbjct: 198 YFSDKIYK 205
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 117 bits (294), Expect = 2e-26
Identities = 66/192 (34%), Positives = 107/192 (55%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KSSTGNSILG K F+S + A S+T+ C W ++ V+DTP +F +EV D +
Sbjct: 43 KSSTGNSILGEKVFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGIFDTEVPDADTQ-R 101
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E R V LGR+T ++ +A + + +FG I++ TRK+DL +
Sbjct: 102 EITRYVALTSPGPHALLLVVPLGRYTVEEHKATQKILDMFGKQARRFMILLLTRKDDLED 161
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
+ +Y+ + + ++++ E R C FNNRA+G E+E Q +L+ LV+ +VR+ GG
Sbjct: 162 TDIHEYLEKAP-KFFQEVMHEFQNRYCLFNNRASGAEKEEQKMQLLTLVQSMVRENGGRC 220
Query: 852 YTNDVYRLAQAL 887
+TN +Y A+ +
Sbjct: 221 FTNKMYESAECV 232
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,665,706
Number of extensions: 954302
Number of successful extensions: 4275
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 4235
Number of HSP's successfully gapped: 16
Length of query: 541
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 435
Effective length of database: 12,433,743
Effective search space: 5408678205
Effective search space used: 5408678205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001409
(1623 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 498 e-141
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 430 e-120
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 188 8e-48
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 146 4e-35
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 114 1e-25
Alignment gi|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelia... 90 3e-18
Alignment gi|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like ... 90 3e-18
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 498 bits (1282), Expect = e-141
Identities = 248/275 (90%), Positives = 249/275 (90%)
Frame = +3
Query: 183 MKLTLGRQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSR 362
MKLTLGRQKKPRDEENPHGSEDLQAALQEP KSSTGNSILGRKHFDSR
Sbjct: 1 MKLTLGRQKKPRDEENPHGSEDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSR 60
Query: 363 LRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXX 542
LRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCY
Sbjct: 61 LRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALL 120
Query: 543 XVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQ 722
VTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQ
Sbjct: 121 LVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQ 180
Query: 723 LVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSP 902
LVAECGGRVCAFNNRATGPEQEAQVTEL+RLVEDLVRDRGGAPYTNDVY LAQALGGVSP
Sbjct: 181 LVAECGGRVCAFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSP 240
Query: 903 EERLRKVAERVAQKQQGCCLQRFLCEKPKAQRTWW 1007
EERLRKVAERVAQKQQGCCLQRFLCEKPKAQRTWW
Sbjct: 241 EERLRKVAERVAQKQQGCCLQRFLCEKPKAQRTWW 275
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 430 bits (1106), Expect = e-120
Identities = 223/272 (81%), Positives = 229/272 (84%), Gaps = 3/272 (1%)
Frame = +3
Query: 201 RQKKPRDEENPHGSEDLQAALQEPXXXXXXXXXXXXXKSSTGNSILGRKHFDSRLRATSV 380
RQK R+EENPHGSEDLQAALQEP KSSTGNSILGRKHFDSRLRATSV
Sbjct: 3 RQKTARNEENPHGSEDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSV 62
Query: 381 TRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYXXXXXXXXXXXXVTQLG 560
TRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCY VTQLG
Sbjct: 63 TRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLG 122
Query: 561 RFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECG 740
RFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECG
Sbjct: 123 RFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECG 182
Query: 741 GRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERLRK 920
GRVCAFNNRATGPEQEAQVTEL+RLVEDLVRDRGGAPYTNDVY LAQALGGVSPEERLRK
Sbjct: 183 GRVCAFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRK 242
Query: 921 VAERVA---QKQQGCCLQRFLCEKPKAQRTWW 1007
VAE+VA KQ+ L + P+A TWW
Sbjct: 243 VAEQVAGRQLKQRWGWLLASRWKWPEALGTWW 274
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 188 bits (477), Expect = 8e-48
Identities = 101/193 (52%), Positives = 130/193 (67%), Gaps = 3/193 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPD-- 485
KS+TGNSILG++ F+SRL A S+T++C+V+ G W ++ V+DTPD+FS DP
Sbjct: 80 KSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVIDTPDMFSGR----DPSES 135
Query: 486 -CKERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKED 662
+E RC+ VTQLGRFT +D+Q R VK LFG V HTIV+FTRKED
Sbjct: 136 LYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHTIVLFTRKED 195
Query: 663 LAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRG 842
L GSL Y+ S+N+AL +LVA CGGRVCAFNNRA G ++AQV ELM L+E LVR +
Sbjct: 196 LEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDLIESLVRAKK 255
Query: 843 GAPYTNDVYRLAQ 881
G YTN +YR ++
Sbjct: 256 GDCYTNQLYRQSE 268
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 146 bits (368), Expect = 4e-35
Identities = 82/185 (44%), Positives = 113/185 (61%), Gaps = 2/185 (1%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILGRK F +L + VT+ WA +++V+DTPD+ S A P
Sbjct: 89 KSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAA---PGVA 145
Query: 492 ERG--RCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDL 665
+G R VTQLGRFT +DQ+ R ++ +FG GV AHTI+VFTRKEDL
Sbjct: 146 AQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDL 205
Query: 666 AEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGG 845
GSL++Y+R+++N+ L QL C R C FNN+ G EQEAQ+ ELM+ +E ++ + G
Sbjct: 206 GGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVEGAEQEAQLEELMQQIESILWENEG 265
Query: 846 APYTN 860
Y+N
Sbjct: 266 HYYSN 270
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like
[Sus scrofa].
Length = 315
Score = 114 bits (286), Expect = 1e-25
Identities = 82/229 (35%), Positives = 119/229 (51%)
Frame = +3
Query: 312 KSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCK 491
KS+TGNSILG+K F S + A S+T+ C W E +V V+DTP +F EV D K
Sbjct: 37 KSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDTPGIFDPEVQEED-TVK 95
Query: 492 ERGRCYXXXXXXXXXXXXVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAE 671
E RC V LGR T Q QA + + G+ I + TRK+DL
Sbjct: 96 EICRCMILTSPGXHALLLVIPLGR-TRQRAQASSKIXPV-GERAMQRMIXLVTRKDDLEG 153
Query: 672 GSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELMRLVEDLVRDRGGAP 851
+Y R++ ++++R+L+ + R C NNRATG E++ Q +L+ LV +V++ G
Sbjct: 154 TDFHEYXREA-SESVRELMGKFRNRYCVVNNRATGEERKRQRDQLLSLVVRVVKECGERY 212
Query: 852 YTNDVYRLAQALGGVSPEERLRKVAERVAQKQQGCCLQRFLCEKPKAQR 998
YTN +Y ++ + EE R ER K + C EKPK+Q+
Sbjct: 213 YTNYLYEKSEEVIQKVIEENRRAELEREKAKGRQECE-----EKPKSQQ 256
>ref|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelial-like [Sus scrofa].
Length = 767
Score = 90.1 bits (222), Expect = 3e-18
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Frame = +3
Query: 597 VKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RA 770
+KA+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 582 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRT 640
Query: 771 TGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERLRKVAE 929
E+EAQ+ EL+ L+E +VRD GA YT+ +Y +ERLR E
Sbjct: 641 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 685
>ref|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like [Sus scrofa].
Length = 208
Score = 90.1 bits (222), Expect = 3e-18
Identities = 47/113 (41%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Frame = +3
Query: 597 VKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RA 770
+KA+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 23 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRT 81
Query: 771 TGPEQEAQVTELMRLVEDLVRDRGGAPYTNDVYRLAQALGGVSPEERLRKVAE 929
E+EAQ+ EL+ L+E +VRD GA YT+ +Y +ERLR E
Sbjct: 82 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 126
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,793,556
Number of extensions: 1095186
Number of successful extensions: 3665
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3654
Number of HSP's successfully gapped: 7
Length of query: 541
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 437
Effective length of database: 8,754,644
Effective search space: 3825779428
Effective search space used: 3825779428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001409
(1623 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 1360 0.0
Sscrofa_ChrX 62 1e-06
>Sscrofa_Chr18
|| Length = 61220071
Score = 1360 bits (686), Expect = 0.0
Identities = 698/702 (99%)
Strand = Plus / Plus
Query: 237 ggttctgaggacctccaggcggccctgcaggagcccaggctgcggctcctcctggccggg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874011 ggttctgaggacctccaggcggccctgcaggagcccaggctgcggctcctcctggccggg 6874070
Query: 297 aggacgggggcggggaagagctccacgggaaacagcatcctgggccggaagcactttgac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874071 aggacgggggcggggaagagctccacgggaaacagcatcctgggccggaagcactttgac 6874130
Query: 357 tccaggctcagggccacgtcggtgacccgaagctgtgccgtggcgagcggcaggtgggcg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874131 tccaggctcagggccacgtcggtgacccgaagctgtgccgtggcgagcggcaggtgggcg 6874190
Query: 417 gagtgggacgtggatgtccttgacaccccggaccttttcagctccgaagtcgcccggaca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874191 gagtgggacgtggatgtccttgacaccccggaccttttcagctccgaagtcgcccggaca 6874250
Query: 477 gaccccgactgcaaggagagaggccgctgctacctgctcgcagcccccgggccccacgcc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874251 gaccccgactgcaaggagagaggccgctgctacctgctcgcagcccccgggccccacgcc 6874310
Query: 537 ctgctcctggtgacccagctgggccgcttcacggcccaggaccagcaggcctggaggggg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874311 ctgctcctggtgacccagctgggccgcttcacggcccaggaccagcaggcctggaggggg 6874370
Query: 597 gtgaaggcgctgttcggggacggggtctcggcgcacacgatcgtggtcttcacccgcaag 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874371 gtgaaggcgctgttcggggacggggtctcggcgcacacgatcgtggtcttcacccgcaag 6874430
Query: 657 gaggacctggcggagggctccctgcaggactacgtgcgcgacagcgagaaccaggcgctc 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874431 gaggacctggcggagggctccctgcaggactacgtgcgcgacagcgagaaccaggcgctc 6874490
Query: 717 aggcagctggtggccgagtgcgggggccgcgtctgcgcctttaacaaccgcgccacgggt 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874491 aggcagctggtggccgagtgcgggggccgcgtctgcgcctttaacaaccgcgccacgggt 6874550
Query: 777 cccgagcaggaggcgcaggtgacggagctgatgcggctggtggaggatctggtgagggac 836
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 6874551 cccgagcaggaggcgcaggtgacggagctgctgaggctggtggaggatctggtgagggac 6874610
Query: 837 cgcggcggcgccccctacaccaacgacgtgtaccgcctggcgcaggccctgggcggcgtg 896
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6874611 cgcggcggcgccccctacaccaacgacgtgtaccacctggcgcaggccctgggcggcgtg 6874670
Query: 897 agcccggaggagaggctccgcaaggtggccgagcgagtggca 938
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6874671 agcccggaggagaggctccgcaaggtggccgagcaagtggca 6874712
Score = 73.8 bits (37), Expect = 3e-10
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 521 ccccgggccccacgccctgctcctggtgacccagctgggccgcttcacg 569
|||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 6631213 ccccgggccccacgccgtcctcctggtgacacagctgggccgcttcacg 6631165
>Sscrofa_ChrX
|| Length = 144288218
Score = 61.9 bits (31), Expect = 1e-06
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 1322 gtctcagaggcggctcacatctggtgttgcctatggctgtggtgttggcct 1372
|||||||| |||||||| |||||||||||| | |||||||||||| |||||
Sbjct: 9768476 gtctcagatgcggctcagatctggtgttgcttttggctgtggtgtaggcct 9768526
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,385,286
Number of extensions: 3721
Number of successful extensions: 3721
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3721
Number of HSP's successfully gapped: 3
Length of query: 1623
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1601
Effective length of database: 2,808,408,574
Effective search space: 4496262126974
Effective search space used: 4496262126974
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)