Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001434
(1136 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092387.1| ubiquitin/ISG15-conjugating enzyme E2 L6 [Bo... 259 2e-69
Alignment gi|NP_001071562.1| ubiquitin-conjugating enzyme E2 L3 [Bos taur... 177 2e-44
Alignment gi|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taur... 104 1e-22
Alignment gi|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taur... 104 1e-22
Alignment gi|NP_001068603.1| ubiquitin-conjugating enzyme E2 D3 [Bos taur... 100 4e-21
Alignment gi|XP_002692267.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 98 1e-20
Alignment gi|NP_001069007.1| ubiquitin-conjugating enzyme E2D 4 [Bos taur... 97 2e-20
Alignment gi|XP_002692420.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 97 2e-20
Alignment gi|XP_002692419.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 97 2e-20
Alignment gi|XP_002692257.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 97 3e-20
>ref|NP_001092387.1| ubiquitin/ISG15-conjugating enzyme E2 L6 [Bos taurus].
Length = 153
Score = 259 bits (663), Expect = 2e-69
Identities = 122/153 (79%), Positives = 140/153 (91%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
MTASKRVAKELEDLQKELP+YL L S++ NVLVWHALLLPE+PPYNL+AF L ISFP E
Sbjct: 1 MTASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLLPERPPYNLKAFRLCISFPRE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPF+PPTV FTTRIYHPNVD +G+VCLPIIS +NWK T+TCQVLEALN+LVN+PEPGQP
Sbjct: 61 YPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 719
+R+ELA+QLTQDPELF++ A+EFTLQFGVDRPS
Sbjct: 121 VRLELAEQLTQDPELFDQMAQEFTLQFGVDRPS 153
>ref|NP_001071562.1| ubiquitin-conjugating enzyme E2 L3 [Bos taurus].
Length = 154
Score = 177 bits (448), Expect = 2e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taurus].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>ref|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taurus].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P + D ++ W A ++ P Y F L + FP +Y
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP + FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
++A D E +NR A E+T ++ +
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>ref|NP_001068603.1| ubiquitin-conjugating enzyme E2 D3 [Bos taurus].
Length = 147
Score = 99.8 bits (247), Expect = 4e-21
Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNDSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>ref|XP_002692267.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 177
Score = 98.2 bits (243), Expect = 1e-20
Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 1/164 (0%)
Frame = +3
Query: 219 TVSLESDRAHTGPEMTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPP 395
T+ +D P+ A K + KEL DL ++ P D ++ W A ++ P P
Sbjct: 16 TIHFPTDYPFKLPKTLALKWINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSP 74
Query: 396 YNLRAFNLRISFPEEYPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVL 575
Y F L I FP +YPFK P V FTTRIYHPN++S G +CL I W P +VL
Sbjct: 75 YQGGVFFLTIHFPTDYPFKLPKVAFTTRIYHPNINSNGSICLD-IPRSQWSPALIISKVL 133
Query: 576 EALNVLVNRPEPGQPLRVELADQLTQDPELFNRKAEEFTLQFGV 707
++ L+ P P PL E+A D + +NR + E+T ++ +
Sbjct: 134 LSICSLLCDPNPDDPLVPEIARMYKTDRDKYNRVSREWTQKYAM 177
>ref|NP_001069007.1| ubiquitin-conjugating enzyme E2D 4 [Bos taurus].
Length = 151
Score = 97.4 bits (241), Expect = 2e-20
Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVVFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELF 668
E+A D E +
Sbjct: 120 VPEIAHTYKADREKY 134
>ref|XP_002692420.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 147
Score = 97.4 bits (241), Expect = 2e-20
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A K + KEL DL ++ P +D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKWINKELSDLARDPPAQCSAGPVED-DMFHWEATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFK P V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALIISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARMYKTDRDKYNRVSREWTQKYAM 147
>ref|XP_002692419.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 147
Score = 97.4 bits (241), Expect = 2e-20
Identities = 55/148 (37%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A K + KEL DL ++ P +D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKWINKELSDLARDPPAQCSAGPVED-DMFHWEATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFK P V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALIISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARMYKTDRDKYNRVSREWTQKYAM 147
>ref|XP_002692257.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 183
Score = 97.1 bits (240), Expect = 3e-20
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 249 TGPEMTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRI 425
+G A K + KEL DL ++ P D ++ W A ++ P PY F L I
Sbjct: 32 SGVTTLALKWINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTI 90
Query: 426 SFPEEYPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRP 605
FP +YPFK P V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P
Sbjct: 91 HFPTDYPFKLPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALIISKVLLSICSLLCDP 149
Query: 606 EPGQPLRVELADQLTQDPELFNRKAEEFTLQFGV 707
P PL E+A D + +NR + E+T ++ +
Sbjct: 150 NPDDPLVPEIARMYKTDRDKYNRVSREWTQKYAM 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,779,909
Number of extensions: 1341170
Number of successful extensions: 6605
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 6539
Number of HSP's successfully gapped: 74
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001434
(1136 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533174.1| PREDICTED: similar to ubiquitin-conjugating enz... 263 3e-70
Alignment gi|XP_859715.1| PREDICTED: similar to ubiquitin-conjugating enz... 180 2e-45
Alignment gi|XP_534767.2| PREDICTED: similar to Ubiquitin-conjugating enz... 177 2e-44
Alignment gi|XP_860387.1| PREDICTED: similar to Ubiquitin-conjugating enz... 147 2e-35
Alignment gi|XP_850377.1| PREDICTED: similar to Ubiquitin-conjugating enz... 139 4e-33
Alignment gi|XP_850730.1| PREDICTED: similar to ubiquitin-conjugating enz... 104 1e-22
Alignment gi|XP_855983.1| PREDICTED: similar to Ubiquitin-conjugating enz... 104 1e-22
Alignment gi|XP_855942.1| PREDICTED: similar to Ubiquitin-conjugating enz... 104 1e-22
Alignment gi|XP_855896.1| PREDICTED: similar to Ubiquitin-conjugating enz... 104 1e-22
Alignment gi|XP_848325.1| PREDICTED: similar to Ubiquitin-conjugating enz... 104 1e-22
>ref|XP_533174.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2L 6 isoform 1
[Canis familiaris].
Length = 153
Score = 263 bits (671), Expect = 3e-70
Identities = 126/153 (82%), Positives = 138/153 (90%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
MTASKRVAKELE LQ +LP YL LFSDDA+VLVWH LLLPEKPPYNL+AF+LRISFPE+
Sbjct: 1 MTASKRVAKELESLQAKLPPYLRDLFSDDADVLVWHVLLLPEKPPYNLKAFHLRISFPED 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPPTVTFTTRIYHPNV +G VCLPIIS ENW P TK CQVLEAL+VLVNRP+ GQP
Sbjct: 61 YPFKPPTVTFTTRIYHPNVGHDGDVCLPIISKENWNPHTKACQVLEALSVLVNRPDLGQP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 719
+RVELAD LT+DPELFNRKA+EFTLQ+GVDRPS
Sbjct: 121 VRVELADLLTRDPELFNRKAQEFTLQYGVDRPS 153
>ref|XP_859715.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2L 6 isoform 1
isoform 3 [Canis familiaris].
Length = 134
Score = 180 bits (457), Expect = 2e-45
Identities = 88/118 (74%), Positives = 96/118 (81%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
MTASKRVAKELE LQ +LP YL LFSDDA+VLVWH LLLPEKPPYNL+AF+LRISFPE+
Sbjct: 1 MTASKRVAKELESLQAKLPPYLRDLFSDDADVLVWHVLLLPEKPPYNLKAFHLRISFPED 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPG 614
YPFKPPTVTFTTRIYHPNV +G VCLPIIS ENW P TK CQ + L R +PG
Sbjct: 61 YPFKPPTVTFTTRIYHPNVGHDGDVCLPIISKENWNPHTKACQGGTG-SPLTGRTDPG 117
>ref|XP_534767.2| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) isoform 1 [Canis familiaris].
Length = 154
Score = 177 bits (448), Expect = 2e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_860387.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) isoform 2 [Canis familiaris].
Length = 122
Score = 147 bits (371), Expect = 2e-35
Identities = 64/114 (56%), Positives = 87/114 (76%)
Frame = +3
Query: 375 LLPEKPPYNLRAFNLRISFPEEYPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPC 554
L+ + PPY+ AF + I+FP EYPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP
Sbjct: 7 LMKDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPA 66
Query: 555 TKTCQVLEALNVLVNRPEPGQPLRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
TKT QV+++L LVN P+P PLR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 67 TKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 120
>ref|XP_850377.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 L3
(Ubiquitin-protein ligase L3) (Ubiquitin carrier protein
L3) (UbcM4) [Canis familiaris].
Length = 137
Score = 139 bits (351), Expect = 4e-33
Identities = 66/135 (48%), Positives = 92/135 (68%), Gaps = 7/135 (5%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF ++I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIKINFPAE 60
Query: 441 YPFKPPTVT-------FTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVN 599
YPFKP + F T IYH N+D +GQVCLP+IS ENWKP TKT QV++ L LVN
Sbjct: 61 YPFKPLKIIQGSLKIIFKTEIYHRNIDEKGQVCLPVISAENWKPATKTDQVIQFLIALVN 120
Query: 600 RPEPGQPLRVELADQ 644
P+P PLR +LA++
Sbjct: 121 DPQPKHPLRADLAEE 135
>ref|XP_850730.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 1, UBC4/5
homolog [Canis familiaris].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P + D ++ W A ++ P Y F L + FP +Y
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP + FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
++A D E +NR A E+T ++ +
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>ref|XP_855983.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 5 [Canis familiaris].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>ref|XP_855942.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 4 [Canis familiaris].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>ref|XP_855896.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 3 [Canis familiaris].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>ref|XP_848325.1| PREDICTED: similar to Ubiquitin-conjugating enzyme E2 D2
(Ubiquitin-protein ligase D2) (Ubiquitin carrier protein
D2) (Ubiquitin-conjugating enzyme E2-17 kDa 2) (E2(17)KB
2) isoform 1 [Canis familiaris].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,763,480
Number of extensions: 1380895
Number of successful extensions: 7042
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 6985
Number of HSP's successfully gapped: 64
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001434
(1136 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004214.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isofor... 253 3e-67
Alignment gi|NP_003338.1| ubiquitin-conjugating enzyme E2 L3 [Homo sapien... 177 2e-44
Alignment gi|NP_937826.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isofor... 148 1e-35
Alignment gi|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapien... 107 2e-23
Alignment gi|NP_003329.1| ubiquitin-conjugating enzyme E2 D1 isoform 1 [H... 104 1e-22
Alignment gi|NP_003330.1| ubiquitin-conjugating enzyme E2 D2 isoform 1 [H... 104 1e-22
Alignment gi|NP_871621.1| ubiquitin-conjugating enzyme E2 D3 isoform 2 [H... 103 3e-22
Alignment gi|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 102 7e-22
Alignment gi|NP_871619.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 102 7e-22
Alignment gi|NP_871618.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 102 7e-22
>ref|NP_004214.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 1 [Homo sapiens].
Length = 153
Score = 253 bits (645), Expect = 3e-67
Identities = 119/153 (77%), Positives = 134/153 (87%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS RV KELEDLQK+ P YL L SDDANVLVWHALLLP++PPY+L+AFNLRISFP E
Sbjct: 1 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP + FTT+IYHPNVD GQ+CLPIIS+ENWKPCTKTCQVLEALNVLVNRP +P
Sbjct: 61 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 719
LR++LAD LTQ+PELF + AEEFTL+FGVDRPS
Sbjct: 121 LRMDLADLLTQNPELFRKNAEEFTLRFGVDRPS 153
>ref|NP_003338.1| ubiquitin-conjugating enzyme E2 L3 [Homo sapiens].
Length = 154
Score = 177 bits (448), Expect = 2e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|NP_937826.1| ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 2 [Homo sapiens].
Length = 87
Score = 148 bits (373), Expect = 1e-35
Identities = 67/86 (77%), Positives = 77/86 (89%)
Frame = +3
Query: 462 VTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPLRVELAD 641
+ FTT+IYHPNVD GQ+CLPIIS+ENWKPCTKTCQVLEALNVLVNRP +PLR++LAD
Sbjct: 2 IKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLAD 61
Query: 642 QLTQDPELFNRKAEEFTLQFGVDRPS 719
LTQ+PELF + AEEFTL+FGVDRPS
Sbjct: 62 LLTQNPELFRKNAEEFTLRFGVDRPS 87
>ref|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapiens].
Length = 147
Score = 107 bits (268), Expect = 2e-23
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIAHTYKADREKYNRLAREWTQKYAM 147
>ref|NP_003329.1| ubiquitin-conjugating enzyme E2 D1 isoform 1 [Homo sapiens].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P + D ++ W A ++ P Y F L + FP +Y
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP + FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
++A D E +NR A E+T ++ +
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>ref|NP_003330.1| ubiquitin-conjugating enzyme E2 D2 isoform 1 [Homo sapiens].
Length = 147
Score = 104 bits (260), Expect = 1e-22
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDREKYNRIAREWTQKYAM 147
>ref|NP_871621.1| ubiquitin-conjugating enzyme E2 D3 isoform 2 [Homo sapiens].
Length = 148
Score = 103 bits (257), Expect = 3e-22
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR A E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRLAREWTEKYAM 147
>ref|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 102 bits (254), Expect = 7e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_871619.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 102 bits (254), Expect = 7e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_871618.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 102 bits (254), Expect = 7e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,668,291
Number of extensions: 1341066
Number of successful extensions: 6587
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 6507
Number of HSP's successfully gapped: 50
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001434
(1136 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064333.2| ubiquitin/ISG15-conjugating enzyme E2 L6 [Mus m... 231 6e-61
Alignment gi|XP_003086351.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 177 2e-44
Alignment gi|NP_033482.1| ubiquitin-conjugating enzyme E2 L3 [Mus musculu... 177 2e-44
Alignment gi|XP_001475499.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 174 9e-44
Alignment gi|XP_003085723.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 174 9e-44
Alignment gi|XP_001477949.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 174 1e-43
Alignment gi|XP_001475020.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 174 1e-43
Alignment gi|XP_619973.2| PREDICTED: ubiquitin-conjugating enzyme E2 L3-l... 169 3e-42
Alignment gi|XP_922588.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-l... 169 3e-42
Alignment gi|XP_003086739.1| PREDICTED: ubiquitin-conjugating enzyme E2 L... 167 1e-41
>ref|NP_064333.2| ubiquitin/ISG15-conjugating enzyme E2 L6 [Mus musculus].
Length = 153
Score = 231 bits (590), Expect = 6e-61
Identities = 111/153 (72%), Positives = 129/153 (84%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M ASKRVAKELE L KELP YL +L SDDANVLVWH LLLP++ PY L+AF +RI FP E
Sbjct: 1 MMASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLLPDQLPYGLKAFQVRIDFPRE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPPT+ FTT+IYHPNV +G VCLP+ISNENWKP TK QVLEALNVLV++P +P
Sbjct: 61 YPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 719
+R+ELAD LTQ+PE+F +KAEEFTL+FGVDRPS
Sbjct: 121 VRLELADLLTQNPEMFRKKAEEFTLKFGVDRPS 153
>ref|XP_003086351.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 177 bits (448), Expect = 2e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|NP_033482.1| ubiquitin-conjugating enzyme E2 L3 [Mus musculus].
Length = 154
Score = 177 bits (448), Expect = 2e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_001475499.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 174 bits (442), Expect = 9e-44
Identities = 78/152 (51%), Positives = 111/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKRGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWK TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKLATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_003085723.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 174 bits (442), Expect = 9e-44
Identities = 78/152 (51%), Positives = 111/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKRGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWK TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKLATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_001477949.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like isoform 2 [Mus
musculus].
Length = 154
Score = 174 bits (441), Expect = 1e-43
Identities = 78/152 (51%), Positives = 110/152 (72%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV++ LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQFFIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_001475020.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 174 bits (441), Expect = 1e-43
Identities = 78/152 (51%), Positives = 110/152 (72%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV++ LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQFFIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_619973.2| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like isoform 1 [Mus
musculus].
Length = 154
Score = 169 bits (429), Expect = 3e-42
Identities = 76/152 (50%), Positives = 108/152 (71%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D AN+L W L++P+ PPY+ AF + I+F E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDGANLLTWQGLIVPDNPPYDKGAFRIEINFAAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENW P TKT QV+++L L N P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWMPATKTDQVIQSLTALANDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGGKRP 152
>ref|XP_922588.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like isoform 3 [Mus
musculus].
Length = 154
Score = 169 bits (429), Expect = 3e-42
Identities = 76/152 (50%), Positives = 108/152 (71%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D AN+L W L++P+ PPY+ AF + I+F E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDGANLLTWQGLIVPDNPPYDKGAFRIEINFAAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENW P TKT QV+++L L N P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWMPATKTDQVIQSLTALANDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGGKRP 152
>ref|XP_003086739.1| PREDICTED: ubiquitin-conjugating enzyme E2 L3-like [Mus musculus].
Length = 154
Score = 167 bits (423), Expect = 1e-41
Identities = 76/152 (50%), Positives = 109/152 (71%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN L++P+KPPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKYGMKNFCNIQVDEANSWTSQGLIVPDKPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +T T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LV+ P+P P
Sbjct: 61 YPFKPPKITLKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLTALVSDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,079,815
Number of extensions: 1103848
Number of successful extensions: 5335
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 5278
Number of HSP's successfully gapped: 51
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001434
(1136 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353899.1| PREDICTED: ubiquitin/ISG15-conjugating enzym... 318 5e-87
Alignment gi|XP_003122809.2| PREDICTED: ubiquitin/ISG15-conjugating enzym... 318 5e-87
Alignment gi|NP_001172062.1| ubiquitin-conjugating enzyme E2 L3 [Sus scro... 177 1e-44
Alignment gi|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 107 9e-24
Alignment gi|NP_001072142.1| UB2D1 [Sus scrofa]. 104 8e-23
Alignment gi|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 102 4e-22
Alignment gi|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 102 4e-22
Alignment gi|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scro... 102 4e-22
Alignment gi|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D... 100 3e-21
Alignment gi|XP_003124043.2| PREDICTED: ubiquitin-conjugating enzyme E2 D... 97 2e-20
>ref|XP_003353899.1| PREDICTED: ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 2 [Sus
scrofa].
Length = 153
Score = 318 bits (814), Expect = 5e-87
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE
Sbjct: 1 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP
Sbjct: 61 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 719
LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS
Sbjct: 121 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 153
>ref|XP_003122809.2| PREDICTED: ubiquitin/ISG15-conjugating enzyme E2 L6 isoform 1 [Sus
scrofa].
Length = 153
Score = 318 bits (814), Expect = 5e-87
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE
Sbjct: 1 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP
Sbjct: 61 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 719
LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS
Sbjct: 121 LRVELADQLTQDPELFNRKAEEFTLQFGVDRPS 153
>ref|NP_001172062.1| ubiquitin-conjugating enzyme E2 L3 [Sus scrofa].
Length = 154
Score = 177 bits (448), Expect = 1e-44
Identities = 79/152 (51%), Positives = 112/152 (73%)
Frame = +3
Query: 261 MTASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLLPEKPPYNLRAFNLRISFPEE 440
M AS+R+ KELE+++K + + D+AN+L W L++P+ PPY+ AF + I+FP E
Sbjct: 1 MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAE 60
Query: 441 YPFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQP 620
YPFKPP +TF T+IYHPN+D +GQVCLP+IS ENWKP TKT QV+++L LVN P+P P
Sbjct: 61 YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 120
Query: 621 LRVELADQLTQDPELFNRKAEEFTLQFGVDRP 716
LR +LA++ ++D + F + AEEFT ++G RP
Sbjct: 121 LRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152
>ref|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D4-like [Sus scrofa].
Length = 147
Score = 107 bits (268), Expect = 9e-24
Identities = 59/148 (39%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIQKELTDLQRDPPAQCSAGPVGD-DLFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D E +NR A E+T ++ +
Sbjct: 120 VPEIAHTYKADREKYNRLAREWTQKYAM 147
>ref|NP_001072142.1| UB2D1 [Sus scrofa].
Length = 147
Score = 104 bits (260), Expect = 8e-23
Identities = 55/148 (37%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DLQ++ P + D ++ W A ++ P Y F L + FP +Y
Sbjct: 2 ALKRIQKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP + FTT+IYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQ-WSPALTVSKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
++A D E +NR A E+T ++ +
Sbjct: 120 VPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>ref|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 2 [Sus
scrofa].
Length = 147
Score = 102 bits (254), Expect = 4e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>ref|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 1 [Sus
scrofa].
Length = 147
Score = 102 bits (254), Expect = 4e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scrofa].
Length = 147
Score = 102 bits (254), Expect = 4e-22
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP V FTTRIYHPN++S G +CL I+ ++ W P +VL ++ L+ P P PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A D + +NR + E+T ++ +
Sbjct: 120 VPEIARIYKTDRDKYNRISREWTQKYAM 147
>ref|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D2-like [Sus scrofa].
Length = 147
Score = 99.8 bits (247), Expect = 3e-21
Identities = 55/148 (37%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Frame = +3
Query: 267 ASKRVAKELEDLQKELPRYLGKLFSDDANVLVWHALLL-PEKPPYNLRAFNLRISFPEEY 443
A KR+ KEL DL ++ P D ++ W A ++ P PY F L I FP +Y
Sbjct: 2 ALKRIHKELLDLSRDPPDQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTIHFPSDY 60
Query: 444 PFKPPTVTFTTRIYHPNVDSEGQVCLPIISNENWKPCTKTCQVLEALNVLVNRPEPGQPL 623
PFKPP + FTT+IYHPN++ G +CL I+ +E W P +VL ++ ++ P P PL
Sbjct: 61 PFKPPKIAFTTQIYHPNINRNGNICLDILRSE-WSPALTISKVLLSICSMLCDPNPDDPL 119
Query: 624 RVELADQLTQDPELFNRKAEEFTLQFGV 707
E+A T+D ++R A E+T ++ +
Sbjct: 120 VPEIAKIYTKDRRKYDRIAREWTEKYAM 147
>ref|XP_003124043.2| PREDICTED: ubiquitin-conjugating enzyme E2 D2 [Sus scrofa].
Length = 199
Score = 96.7 bits (239), Expect = 2e-20
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Frame = +3
Query: 354 VLVWHALLL-PEKPPYNLRAFNLRISFPEEYPFKPPTVTFTTRIYHPNVDSEGQVCLPII 530
V W A ++ P PY F L I FP +YPFKPP V FTTRIYHPN++S G +CL I+
Sbjct: 82 VFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 141
Query: 531 SNENWKPCTKTCQVLEALNVLVNRPEPGQPLRVELADQLTQDPELFNRKAEEFTLQFGV 707
++ W P +VL ++ L+ P P PL E+A D E +NR A E+T ++ +
Sbjct: 142 RSQ-WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,617,535
Number of extensions: 870548
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4200
Number of HSP's successfully gapped: 36
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001434
(1136 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 569 e-159
>Sscrofa_Chr02
|| Length = 162569375
Score = 569 bits (287), Expect = e-159
Identities = 287/287 (100%)
Strand = Plus / Plus
Query: 2 gccttgtctgccgacaaaagagctagagttccggggatccgagcccaccgcgccggggac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12987279 gccttgtctgccgacaaaagagctagagttccggggatccgagcccaccgcgccggggac 12987338
Query: 62 ggggcgggtcctcccctccgtggcctcctaggctctgccgaggcggtgggaagcagggcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12987339 ggggcgggtcctcccctccgtggcctcctaggctctgccgaggcggtgggaagcagggcc 12987398
Query: 122 gcccggcccggagtccccgcgggtggagaggagcgtgggcggggctcccggaggtggggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12987399 gcccggcccggagtccccgcgggtggagaggagcgtgggcggggctcccggaggtggggt 12987458
Query: 182 ccccggggcggggagcgccgagtccgccggccggtgcacagtctcgctggagtccgacag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12987459 ccccggggcggggagcgccgagtccgccggccggtgcacagtctcgctggagtccgacag 12987518
Query: 242 agcccacactggtcccgagatgacggcgagcaagcgggtggcaaagg 288
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12987519 agcccacactggtcccgagatgacggcgagcaagcgggtggcaaagg 12987565
Score = 565 bits (285), Expect = e-158
Identities = 288/289 (99%)
Strand = Plus / Plus
Query: 569 agtcctggaggccctcaacgtgctggtgaatagaccagagccagggcagccccttcgggt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002093 agtcctggaggccctcaacgtgctggtgaatagaccagagccagggcagccccttcgggt 13002152
Query: 629 ggagctcgccgaccagctgacccaggacccggagctgttcaacaggaaggccgaagagtt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002153 ggagctcgccgaccagctgacccaggacccggagctgttcaacaggaaggccgaagagtt 13002212
Query: 689 caccctccagttcggagtggaccggccctcctaactctgcccgtgacccgtctctgcacc 748
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13002213 caccctccagttcggagtggaccggccctcgtaactctgcccgtgacccgtctctgcacc 13002272
Query: 749 agatcctctctgcgtgatggacggacataccgcacggatggggagccagagcccctttgt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002273 agatcctctctgcgtgatggacggacataccgcacggatggggagccagagcccctttgt 13002332
Query: 809 gatcctgctcacttcttccaagttttcccttgtaggctgttagtcatta 857
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002333 gatcctgctcacttcttccaagttttcccttgtaggctgttagtcatta 13002381
Score = 412 bits (208), Expect = e-112
Identities = 217/220 (98%)
Strand = Plus / Plus
Query: 917 tacagatgtttgtggtatgtggacccagggcccacaggtgcgcttgtcccactccctttt 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002441 tacagatgtttgtggtatgtggacccagggcccacaggtgcgcttgtcccactccctttt 13002500
Query: 977 tctgctccagagccagggacatcgaggtttgcagagtcacaggccagctcttctggactc 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13002501 tctgctccagagccagggacatcgaggtttgcagagtcacaggccagctcttctggactc 13002560
Query: 1037 tgtgagatgggattcctggtttcgctagttggttcatcgtagagactcaggccacctttc 1096
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 13002561 tgtgagatgggattcctggtttcgctagttggtccatcgtagagactcaggccaccttcc 13002620
Query: 1097 cagccagcttgtgggcagtgagcccagcagctgaccggaa 1136
|||||||||||||||||||||||||||||||||||||||
Sbjct: 13002621 aagccagcttgtgggcagtgagcccagcagctgaccggaa 13002660
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 384 gagaaaccgccctacaacctcagggccttcaaccttcgcatcagcttcccggaggagtac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12999935 gagaaaccgccctacaacctcagggccttcaaccttcgcatcagcttcccggaggagtac 12999994
Query: 444 ccattcaagcccccgacggtgacgtttacaactaggatctaccaccccaacgtggacagc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12999995 ccattcaagcccccgacggtgacgtttacaactaggatctaccaccccaacgtggacagc 13000054
Query: 504 gaaggccaggtgtgtctgcccatcatcagcaacgagaactggaagccctgcaccaagacc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13000055 gaaggccaggtgtgtctgcccatcatcagcaacgagaactggaagccctgcaccaagacc 13000114
Query: 564 tgccaag 570
|||||||
Sbjct: 13000115 tgccaag 13000121
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 286 aggagctggaggatcttcagaaggagcttcccaggtacctcgggaagctgttcagcgatg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12991705 aggagctggaggatcttcagaaggagcttcccaggtacctcgggaagctgttcagcgatg 12991764
Query: 346 atgccaacgtgttggtgtggcacgcgctcctcctgcctg 384
|||||||||||||||||||||||||||||||||||||||
Sbjct: 12991765 atgccaacgtgttggtgtggcacgcgctcctcctgcctg 12991803
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,132,444
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 5
Length of query: 1136
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1115
Effective length of database: 2,808,413,156
Effective search space: 3131380668940
Effective search space used: 3131380668940
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)