Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001448
(938 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 229 3e-60
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 221 7e-58
Alignment gi|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus]. 120 1e-27
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 120 2e-27
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 120 2e-27
Alignment gi|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, p... 119 5e-27
Alignment gi|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [B... 115 4e-26
Alignment gi|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, p... 108 5e-24
Alignment gi|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, ... 103 2e-22
Alignment gi|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light ch... 99 5e-21
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 229 bits (583), Expect = 3e-60
Identities = 121/236 (51%), Positives = 154/236 (65%), Gaps = 3/236 (1%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAW+ LL+ L+A+ +G +Q V+ +P+ +S S G V++TC+ SS ++ +W+QQ
Sbjct: 1 MAWSPLLLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGV-NWYQQV 59
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN--I 396
PG + +IY RP+GVP RFSG+ SGN A LTI QA DEADYFC S N +
Sbjct: 60 PGSGLKTIIYEDKYRPSGVPDRFSGSKSGNTATLTINSLQAEDEADYFCAAGDYSVNTAV 119
Query: 397 FGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXX 576
FGGGT LTVLGQPK+ P+V LFPPS+EEL NKATLVCLISDFYPG+VTV WKA
Sbjct: 120 FGGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGSVTVVWKADGSTIT 179
Query: 577 XXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
+ SKQSN+K DWKS ++C+VTHEG+ V KTV PSEC+
Sbjct: 180 RNVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTHEGSTVTKTVKPSECS 235
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 221 bits (563), Expect = 7e-58
Identities = 118/239 (49%), Positives = 150/239 (62%), Gaps = 6/239 (2%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT LL+ LL + +G + S + Q PA+SVS G T ++TC + +++ W+QQ
Sbjct: 1 MAWTPLLLPLLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH---WYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSA---- 390
PGQ P L+IY +N +G+P RFSG+ S A LTI GAQA DEADY+C S
Sbjct: 58 PGQAPVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYCQSADISGPVSL 117
Query: 391 -NIFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXX 567
++FGGGT +TVLGQPK+ P+V LFPPS EEL NKATLVCLISDFYPG+VTV WKA
Sbjct: 118 CDLFGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGSVTVAWKADGS 177
Query: 568 XXXXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
+ SKQSN+K DWKS ++C+VTHEG+ V KTV S C+
Sbjct: 178 TITRNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTHEGSTVTKTVKTSACS 236
>ref|XP_002694745.1| PREDICTED: IGL@ protein-like [Bos taurus].
Length = 260
Score = 120 bits (302), Expect = 1e-27
Identities = 88/259 (33%), Positives = 118/259 (45%), Gaps = 23/259 (8%)
Frame = +1
Query: 37 VPTMAWTVLLIGLLAVGSGVDSQTVIQE---PAMSVSPGGTVTLTCAFSSGSVTTSNYPS 207
VP W ++L+GL G+ T + P M +P G + S+G S P
Sbjct: 19 VPRQPWPLILLGLAVGAHGLLPPTAAPQSTAPRME-APSGKSPWSLRGSAGWADKSTPPG 77
Query: 208 WFQQTPGQPPRLLIYRTN-NRPTGVPSRFSGAISGNKAALTIT----------------- 333
PP ++ R NR GV SR A+ + ++IT
Sbjct: 78 LTF-----PPAMVTERDGLNR--GVTSRSGAALWPGHSPVSITPSRFPLRPGPRGPGPRC 130
Query: 334 --GAQANDEADYFCTLYKSSANIFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLV 507
G + +F FG GT +T+ QPK P+V LFPPS+EEL T ATLV
Sbjct: 131 WRGVWPEGPSAWFT---------FGSGTKVTIPDQPKFPPSVTLFPPSTEELSTYTATLV 181
Query: 508 CLISDFYPGAVTVTWKAXXXXXXXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTC 687
CLISDFYPG VTV WKA + S+QS++K +WK S ++C
Sbjct: 182 CLISDFYPGNVTVAWKADGSPVTRGVVTSQASQQSSSKYVASSYLTLTGSEWKPKSSYSC 241
Query: 688 QVTHEGTIVEKTVTPSECA 744
+VTHEG+ V KTV PS C+
Sbjct: 242 EVTHEGSTVTKTVKPSACS 260
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 120 bits (301), Expect = 2e-27
Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 7/233 (3%)
Frame = +1
Query: 64 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQP 234
L+GLL + G D Q ++S S G V++TC +S S+ T +W+QQ PG+
Sbjct: 7 LLGLLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQ-ASQSIDTKL--AWYQQKPGKA 63
Query: 235 PRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFGGGTH 414
P+LLIY P+ PS+FSG+ G LTI+ +A+D A Y+C N FG GT
Sbjct: 64 PKLLIYAIPRSPSWFPSQFSGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTK 123
Query: 415 LTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXXXXXXX 594
+ + + A P+V LF PS E+L T ++VCL++DFYP + V WK
Sbjct: 124 VEI-KRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQN 182
Query: 595 KPSKQSNNK--XXXXXXXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 741
+ Q + K +++S +TC+V+H+ T + K+ + +EC
Sbjct: 183 SFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 120 bits (301), Expect = 2e-27
Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 7/233 (3%)
Frame = +1
Query: 64 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQP 234
L+GLL + G D Q ++S S G V++TC +S S+ T +W+QQ PG+
Sbjct: 7 LLGLLLLWLPGKEGDIQVTQSPSSLSASLGDRVSITCQ-ASQSIDTKL--AWYQQKPGKA 63
Query: 235 PRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFGGGTH 414
P+LLIY P+ PS+FSG+ G LTI+ +A+D A Y+C N FG GT
Sbjct: 64 PKLLIYAIPRSPSWFPSQFSGSGFGADFTLTISSLKADDIATYYCLSRNCCVNTFGQGTK 123
Query: 415 LTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXXXXXXX 594
+ + + A P+V LF PS E+L T ++VCL++DFYP + V WK
Sbjct: 124 VEI-KRSDAEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKDINVKWKVDGVTQSSSNFQN 182
Query: 595 KPSKQSNNK--XXXXXXXXXXXXDWKSSSGFTCQVTHEG--TIVEKTVTPSEC 741
+ Q + K +++S +TC+V+H+ T + K+ + +EC
Sbjct: 183 SFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLVKSFSKNEC 235
>ref|XP_001790304.2| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 218
Score = 119 bits (297), Expect = 5e-27
Identities = 59/120 (49%), Positives = 83/120 (69%), Gaps = 1/120 (0%)
Frame = +1
Query: 34 SVPTMAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSW 210
+V TMAW+ LL+ L+ + +G +Q V+ Q P++S S G VT++C SS ++ N W
Sbjct: 49 TVSTMAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSNIGGGNCVGW 108
Query: 211 FQQTPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSA 390
+QQ PG P+ LIYR+ +RP+GVP RFSG+ SGN A LTI+ QA DEADY+C Y+SS+
Sbjct: 109 YQQIPGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADYYCATYESSS 168
>ref|XP_002694708.1| PREDICTED: immunoglobulin iota chain-like [Bos taurus].
Length = 153
Score = 115 bits (289), Expect = 4e-26
Identities = 64/139 (46%), Positives = 88/139 (63%), Gaps = 1/139 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAW+ LL+ L+ + +G +Q V+ Q P++S S G VT++C SS ++ N W+QQ
Sbjct: 1 MAWSPLLLTLVTLCTGSWAQAVLTQPPSVSGSLGQRVTISCTGSSSNIGGGNCVGWYQQI 60
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFG 402
PG P+ LIYR+ +RP+GVP RFSG+ SGN A LTI+ QA DEADY+C Y+SS+
Sbjct: 61 PGSAPKTLIYRSTSRPSGVPDRFSGSRSGNTATLTISSLQAEDEADYYCATYESSS---- 116
Query: 403 GGTHLTVLGQPKAAPTVNL 459
H TVL K T+ L
Sbjct: 117 --YHGTVLQLVKILSTLIL 133
>ref|XP_002694688.1| PREDICTED: immunoglobulin iota chain-like, partial [Bos taurus].
Length = 169
Score = 108 bits (271), Expect = 5e-24
Identities = 64/137 (46%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Frame = +1
Query: 43 TMAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQ 219
TMAW+ L + L+A+ +G +Q V+ +P+ +S S G V++TC SS +V + Y SWFQQ
Sbjct: 3 TMAWSPLFLTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCTGSSSNVG-NGYVSWFQQ 61
Query: 220 TPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIF 399
PG PR LIY +R +GVP RFSG+ SGN A LTI+ QA DEADYFC SS+
Sbjct: 62 IPGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFCAAGDSSS--- 118
Query: 400 GGGTHLTVLGQPKAAPT 450
++ TVL +PT
Sbjct: 119 ---SNATVLQARGESPT 132
>ref|XP_876407.2| PREDICTED: immunoglobin light chain VJ region, partial [Bos
taurus].
Length = 126
Score = 103 bits (258), Expect = 2e-22
Identities = 56/117 (47%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAW+ LL+ L+A+ +G +Q V+ +P+ +S S G V++TC+ SS +V + Y SW+Q
Sbjct: 1 MAWSPLLLTLVALFTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSSNVG-NGYVSWYQLI 59
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN 393
PG PR LIY +R +GVP RFSG+ SGN A LTI+ QA DEADYFC + S++
Sbjct: 60 PGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYFCASAEDSSS 116
>ref|XP_002694712.1| PREDICTED: immunoglobulin lambda-6a light chain variable
region-like [Bos taurus].
Length = 141
Score = 99.0 bits (245), Expect = 5e-21
Identities = 60/144 (41%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT LL+ LL + +G + S + Q PA+SVS G T ++TC + +++ W+QQ
Sbjct: 1 MAWTPLLLPLLTLCAGHLASSQLTQPPAVSVSLGQTASITCQGDDLELLSAH---WYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFG 402
PGQ P L+IY +N +G+P RFSG+ S A LTI GAQA DEADY+C SA+I G
Sbjct: 58 PGQAPVLVIYADDNLASGIPDRFSGSKSDTTATLTIRGAQAEDEADYYC----QSADISG 113
Query: 403 GGTHLTVLG-QPKAAPTVNLFPPS 471
+ G + + P+ + PP+
Sbjct: 114 VHSDTDRWGSETQTLPSCSRSPPA 137
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,817,971
Number of extensions: 1206702
Number of successful extensions: 8626
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 8337
Number of HSP's successfully gapped: 37
Length of query: 312
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,306,398
Effective search space: 3004343580
Effective search space used: 3004343580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001448
(938 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-lik... 248 8e-66
Alignment gi|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-lik... 241 5e-64
Alignment gi|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-lik... 239 2e-63
Alignment gi|XP_856106.1| PREDICTED: similar to Immunoglobulin lambda-lik... 239 4e-63
Alignment gi|XP_856064.1| PREDICTED: similar to Immunoglobulin lambda-lik... 238 6e-63
Alignment gi|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-lik... 236 2e-62
Alignment gi|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-lik... 236 3e-62
Alignment gi|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-lik... 235 4e-62
Alignment gi|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-lik... 234 7e-62
Alignment gi|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-lik... 234 7e-62
>ref|XP_855821.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 3 [Canis familiaris].
Length = 231
Score = 248 bits (632), Expect = 8e-66
Identities = 131/234 (55%), Positives = 155/234 (66%), Gaps = 1/234 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT LL+ LLA+ +G V S + Q P+ +V+ +TC G S W+QQ
Sbjct: 1 MAWTHLLLSLLALCTGSVASYVLTQLPSKNVTLKQPAHITCG---GDNIGSKSVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFG 402
GQ P L+IY ++RPTG+P RFSGA SGN A LTI+GA A DEADY+C ++ SSA +FG
Sbjct: 58 LGQAPVLIIYYDSSRPTGIPERFSGANSGNTATLTISGALAEDEADYYCQVWDSSALVFG 117
Query: 403 GGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXXX 582
GGTHLTVLGQPKA+P+V LFPPSSEELG NKATLVCLISDFYP VTV WKA
Sbjct: 118 GGTHLTVLGQPKASPSVTLFPPSSEELGANKATLVCLISDFYPSGVTVAWKADGSPVTQG 177
Query: 583 XXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTHEG+ VEK V P+EC+
Sbjct: 178 VETTKPSKQSNNKYAASSYLSLTPDKWKSHSSFSCLVTHEGSTVEKKVAPAECS 231
>ref|XP_848579.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 1 [Canis familiaris].
Length = 233
Score = 241 bits (616), Expect = 5e-64
Identities = 125/236 (52%), Positives = 157/236 (66%), Gaps = 3/236 (1%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN--I 396
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C +++SSA+ +
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSADCWV 117
Query: 397 FGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXX 576
FG GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 FGEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTII 177
Query: 577 XXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 QGVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 233
>ref|XP_856398.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 17 [Canis familiaris].
Length = 234
Score = 239 bits (611), Expect = 2e-63
Identities = 124/237 (52%), Positives = 156/237 (65%), Gaps = 4/237 (1%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN--- 393
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C +++SS+
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWESSSKNCW 117
Query: 394 IFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXX 573
+FG GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 VFGEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTI 177
Query: 574 XXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 IQGVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 234
>ref|XP_856106.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 10 [Canis familiaris].
Length = 231
Score = 239 bits (609), Expect = 4e-63
Identities = 123/234 (52%), Positives = 152/234 (64%), Gaps = 1/234 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFG 402
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C + S +FG
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVSLGSCWVFG 117
Query: 403 GGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXXX 582
GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 EGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQG 177
Query: 583 XXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 VETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 231
>ref|XP_856064.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 9 [Canis familiaris].
Length = 231
Score = 238 bits (607), Expect = 6e-63
Identities = 122/234 (52%), Positives = 151/234 (64%), Gaps = 1/234 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFG 402
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C + +FG
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVLMGGCWVFG 117
Query: 403 GGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXXX 582
GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 EGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQG 177
Query: 583 XXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 VETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 231
>ref|XP_856315.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 15 [Canis familiaris].
Length = 232
Score = 236 bits (603), Expect = 2e-62
Identities = 123/235 (52%), Positives = 154/235 (65%), Gaps = 2/235 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN-IF 399
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C +++ S +F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWEISVCWVF 117
Query: 400 GGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXX 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 XXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856357.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 16 [Canis familiaris].
Length = 232
Score = 236 bits (601), Expect = 3e-62
Identities = 122/235 (51%), Positives = 154/235 (65%), Gaps = 2/235 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSS-ANIF 399
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C ++++ +F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVWENKYCWVF 117
Query: 400 GGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXX 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 XXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856144.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 11 [Canis familiaris].
Length = 232
Score = 235 bits (600), Expect = 4e-62
Identities = 122/235 (51%), Positives = 153/235 (65%), Gaps = 2/235 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN-IF 399
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C ++ + +F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQKHRGAGCWVF 117
Query: 400 GGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXX 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 XXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856233.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 13 [Canis familiaris].
Length = 232
Score = 234 bits (598), Expect = 7e-62
Identities = 123/235 (52%), Positives = 151/235 (64%), Gaps = 2/235 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSS-ANIF 399
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C Y +F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQHYHHDYCWVF 117
Query: 400 GGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXX 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 XXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
>ref|XP_856188.1| PREDICTED: similar to Immunoglobulin lambda-like polypeptide 1
precursor (Immunoglobulin-related 14.1 protein)
(Immunoglobulin omega polypeptide) (Lambda 5) (CD179b
antigen) isoform 12 [Canis familiaris].
Length = 232
Score = 234 bits (598), Expect = 7e-62
Identities = 122/235 (51%), Positives = 152/235 (64%), Gaps = 2/235 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT+LL+G LA +G V S + Q P++SV+ G T ++TC G+ W+QQ
Sbjct: 1 MAWTLLLLGFLAHCTGSVASYVLTQSPSVSVTLGQTASITCR---GNSIGRKDVHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN-IF 399
PGQ P L+IY N++P+G+P RFSG SG+ A LTI+ AQ NDEADY+C ++ +F
Sbjct: 58 PGQAPLLIIYNDNSQPSGIPERFSGTNSGSTATLTISEAQTNDEADYYCQVHGGGGCWVF 117
Query: 400 GGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXX 579
G GT LTVLGQPK++P V LFPPSSEELG NKATLVCLISDFYP + V WKA
Sbjct: 118 GEGTQLTVLGQPKSSPLVTLFPPSSEELGANKATLVCLISDFYPSGLKVAWKADGSTIIQ 177
Query: 580 XXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK WKS S F+C VTH+G+ VEK V P+EC+
Sbjct: 178 GVETTKPSKQSNNKYTASSYLSLTPDKWKSHSSFSCLVTHQGSTVEKKVAPAECS 232
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,267,829
Number of extensions: 1197905
Number of successful extensions: 9268
Number of sequences better than 1.0e-05: 228
Number of HSP's gapped: 8675
Number of HSP's successfully gapped: 240
Length of query: 312
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 209
Effective length of database: 15,440,896
Effective search space: 3227147264
Effective search space used: 3227147264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001448
(938 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Ho... 148 6e-36
Alignment gi|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isofor... 140 1e-33
Alignment gi|XP_001719673.2| PREDICTED: immunoglobulin omega chain-like [... 86 4e-17
Alignment gi|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-li... 85 1e-16
Alignment gi|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-li... 84 1e-16
Alignment gi|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-li... 84 1e-16
Alignment gi|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-li... 84 1e-16
Alignment gi|XP_003403551.1| PREDICTED: ig kappa chain V-I region Walker-... 84 2e-16
Alignment gi|XP_003403806.1| PREDICTED: ig kappa chain V-I region Walker-... 84 2e-16
Alignment gi|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-... 82 7e-16
>ref|NP_001171597.1| immunoglobulin lambda-like polypeptide 5 [Homo sapiens].
Length = 214
Score = 148 bits (374), Expect = 6e-36
Identities = 74/122 (60%), Positives = 82/122 (67%)
Frame = +1
Query: 379 KSSANIFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKA 558
+S +FG GT +TVLGQPKA PTV LFPPSSEEL NKATLVCLISDFYPGAVTV WKA
Sbjct: 93 QSLCYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKA 152
Query: 559 XXXXXXXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSE 738
KPSKQSNNK WKS ++CQVTHEG+ VEKTV P+E
Sbjct: 153 DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE 212
Query: 739 CA 744
C+
Sbjct: 213 CS 214
>ref|NP_064455.1| immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo
sapiens].
Length = 213
Score = 140 bits (354), Expect = 1e-33
Identities = 68/127 (53%), Positives = 82/127 (64%)
Frame = +1
Query: 364 FCTLYKSSANIFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVT 543
F + + S ++FG GT LTVL QPKA P+V LFPPSSEEL NKATLVCL++DFYPG +T
Sbjct: 87 FQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQANKATLVCLMNDFYPGILT 146
Query: 544 VTWKAXXXXXXXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKT 723
VTWKA PSKQSNNK W+S ++CQV HEG+ VEKT
Sbjct: 147 VTWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKT 206
Query: 724 VTPSECA 744
V P+EC+
Sbjct: 207 VAPAECS 213
>ref|XP_001719673.2| PREDICTED: immunoglobulin omega chain-like [Homo sapiens].
Length = 147
Score = 86.3 bits (212), Expect = 4e-17
Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 7/123 (5%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVIQEP-AMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT LL+ L+ +G SQ V+ +P ++S SPG + TC SG + W+QQ
Sbjct: 1 MAWTPLLLLFLSHCTGSLSQPVLTQPTSLSASPGASARFTCTLRSGINVGTYRIYWYQQK 60
Query: 223 PGQPPR-LLIYRTNN---RPTGVPSRFSGA--ISGNKAALTITGAQANDEADYFCTLYKS 384
PG PR LL Y++++ + +GVPSRFSG+ S N L I+G Q+ DEADY+C ++ S
Sbjct: 61 PGSLPRYLLRYKSDSDKQQGSGVPSRFSGSKDASTNAGLLLISGLQSEDEADYYCAIWYS 120
Query: 385 SAN 393
S +
Sbjct: 121 STS 123
>ref|XP_003403553.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 151
Score = 84.7 bits (208), Expect = 1e-16
Identities = 47/105 (44%), Positives = 63/105 (60%), Gaps = 1/105 (0%)
Frame = +1
Query: 58 VLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQP 234
+L + LL + + Q PA +S+SPG TL+C S +S+Y SW+QQ PGQ
Sbjct: 7 LLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQS--VSSSYLSWYQQKPGQA 64
Query: 235 PRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
PRLLIY + R TG+P+RFSG+ SG LTI+ Q D A Y+C
Sbjct: 65 PRLLIYGASTRATGIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 109
>ref|XP_003403579.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 155
Score = 84.3 bits (207), Expect = 1e-16
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +1
Query: 115 QEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQPPRLLIYRTNNRPTGVPSRF 291
Q PA +S+SPG TL+C S +S+Y SW+QQ PGQ PRLLIY + R TG+P+RF
Sbjct: 29 QSPATLSLSPGERATLSCRASQS--VSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 86
Query: 292 SGAISGNKAALTITGAQANDEADYFC 369
SG+ SG LTI+ Q D A Y+C
Sbjct: 87 SGSGSGTDFTLTISSLQPEDFAVYYC 112
>ref|XP_003403802.1| PREDICTED: ig kappa chain V-III region VH-like [Homo sapiens].
Length = 170
Score = 84.3 bits (207), Expect = 1e-16
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Frame = +1
Query: 115 QEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQPPRLLIYRTNNRPTGVPSRF 291
Q PA +S+SPG TL+C S +S+Y SW+QQ PGQ PRLLIY + R TG+P+RF
Sbjct: 44 QSPATLSLSPGERATLSCRASQS--VSSSYLSWYQQKPGQAPRLLIYGASTRATGIPARF 101
Query: 292 SGAISGNKAALTITGAQANDEADYFC 369
SG+ SG LTI+ Q D A Y+C
Sbjct: 102 SGSGSGTDFTLTISSLQPEDFAVYYC 127
>ref|XP_003403801.1| PREDICTED: ig kappa chain V-III region VG-like [Homo sapiens].
Length = 152
Score = 84.3 bits (207), Expect = 1e-16
Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Frame = +1
Query: 58 VLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQP 234
+L + LL + + Q PA +S+SPG TL+C S + S+Y +W+QQ PGQ
Sbjct: 7 LLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCRASQ---SVSSYLAWYQQKPGQA 63
Query: 235 PRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
PRLLIY +NR TG+P+RFSG+ SG LTI+ + D A Y+C
Sbjct: 64 PRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYC 108
>ref|XP_003403551.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 191
Score = 83.6 bits (205), Expect = 2e-16
Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Frame = +1
Query: 64 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQP 234
L+GLL + G+ D Q ++S S G VT+TC S G SN SW+QQ PGQ
Sbjct: 9 LLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRASQG---ISNGLSWYQQKPGQA 65
Query: 235 PRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
P LLIY ++ +GVPSRFSG+ SG LTI+ Q D A Y+C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYC 110
>ref|XP_003403806.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 191
Score = 83.6 bits (205), Expect = 2e-16
Identities = 48/105 (45%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Frame = +1
Query: 64 LIGLLAV---GSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQP 234
L+GLL + G+ D Q ++S S G VT+TC S G SN SW+QQ PGQ
Sbjct: 9 LLGLLLLWLRGARCDIQVTQSPSSLSASVGDRVTITCRASQG---ISNGLSWYQQKPGQA 65
Query: 235 PRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
P LLIY ++ +GVPSRFSG+ SG LTI+ Q D A Y+C
Sbjct: 66 PTLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDVATYYC 110
>ref|XP_003403581.1| PREDICTED: ig kappa chain V-I region Walker-like [Homo sapiens].
Length = 164
Score = 82.0 bits (201), Expect = 7e-16
Identities = 44/102 (43%), Positives = 60/102 (58%)
Frame = +1
Query: 64 LIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTPGQPPRL 243
L+GL G+ D Q ++S S GG VT+TC S G SN +W+QQ PG+ P+L
Sbjct: 51 LLGLWLPGARCDIQMTQSPSSLSASVGGRVTITCRASQG---ISNNLNWYQQKPGKTPKL 107
Query: 244 LIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
LIY ++ +G+PSRFS + SG LTI+ Q D A Y+C
Sbjct: 108 LIYAASSLQSGIPSRFSDSGSGADYTLTISSLQPEDFAAYYC 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,248,970
Number of extensions: 1150959
Number of successful extensions: 8086
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 7879
Number of HSP's successfully gapped: 21
Length of query: 312
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 210
Effective length of database: 14,934,836
Effective search space: 3136315560
Effective search space used: 3136315560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001448
(938 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mu... 122 5e-28
Alignment gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul... 68 9e-12
Alignment gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu... 68 1e-11
Alignment gi|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus]. 67 2e-11
Alignment gi|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region... 67 2e-11
>ref|NP_001177254.1| immunoglobulin lambda-like polypeptide 1 [Mus musculus].
Length = 209
Score = 122 bits (305), Expect = 5e-28
Identities = 57/117 (48%), Positives = 73/117 (62%)
Frame = +1
Query: 394 IFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXX 573
+FGGGT LT+LGQPK+ P V LF PS + L NKATLVCL+S+FYPG + V WK
Sbjct: 93 VFGGGTQLTILGQPKSDPLVTLFLPSLKNLQANKATLVCLVSEFYPGTLVVDWKVDGVPV 152
Query: 574 XXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
+PSKQ+NNK W S ++C+VTHEG VEK+V+P+EC+
Sbjct: 153 TQGVETTQPSKQTNNKYMVSSYLTLISDQWMPHSRYSCRVTHEGNTVEKSVSPAECS 209
>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
Length = 142
Score = 68.2 bits (165), Expect = 9e-12
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVIQEPAM-SVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT +L+ LLA +G Q ++ +P + S S G T+ L+C S+ W+QQ
Sbjct: 1 MAWTSVLLMLLAYLTGCGPQPMVHQPPLASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60
Query: 223 PGQPPRLLI----YRTNNRPTGVPSRFSGA--ISGNKAALTITGAQANDEADYFCTL 375
PG PPR L+ + ++ +P RFSG+ + N L+I+ Q DEA Y+C +
Sbjct: 61 PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTTRNLGYLSISELQPEDEAVYYCAV 117
>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
Length = 142
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 7/117 (5%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT +L+ LLA +G Q ++ Q P+ S S G T+ L+C S+ W+QQ
Sbjct: 1 MAWTSVLLMLLAHLTGCGPQPMVHQPPSASSSLGATIRLSCTLSNDHNIGIYSIYWYQQR 60
Query: 223 PGQPPRLLI----YRTNNRPTGVPSRFSGA--ISGNKAALTITGAQANDEADYFCTL 375
PG PPR L+ + ++ +P RFSG+ + N L+I+ Q DEA Y+C +
Sbjct: 61 PGHPPRFLLRYFSHSDKHQGPDIPPRFSGSKDTARNLGYLSISELQPEDEAVYYCAV 117
>ref|NP_033540.1| pre-B lymphocyte protein 3 [Mus musculus].
Length = 123
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Frame = +1
Query: 73 LLAVGS--GVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYP-SWFQQTPGQPPRL 243
LL +G+ V T+ Q A SV PG L+C +S T + SW+QQ PG P L
Sbjct: 9 LLLIGTFVAVFQPTLTQPDAFSVFPGQDAHLSCTINSQHATAGDIGVSWYQQQPGSAPHL 68
Query: 244 LIY---RTNNRPTGVPSRFSGAISG--NKAALTITGAQANDEADYFCTL 375
L Y + RP +P RFS + N LTI+ D+ADYFC++
Sbjct: 69 LYYYAEEEHYRPADIPDRFSATVDAAHNACILTISPVLPEDDADYFCSI 117
>ref|XP_357633.3| PREDICTED: similar to Ig kappa chain V-V region L7 precursor [Mus
musculus].
Length = 216
Score = 67.4 bits (163), Expect = 2e-11
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVI--QEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQ 216
M T L+GLL + ++ Q PA +SV+PG V+L+C S + S+Y W+Q
Sbjct: 84 MVSTSQLLGLLLFWTSASRCDIVMTQSPATLSVTPGDRVSLSCRASQ---SISDYLHWYQ 140
Query: 217 QTPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
Q + PRLLI + +G+PSRFSG+ SG+ L+I + D Y+C
Sbjct: 141 QKSHESPRLLIKYASQSISGIPSRFSGSGSGSDFTLSINSVEPEDVGVYYC 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,042,457
Number of extensions: 933483
Number of successful extensions: 6458
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6252
Number of HSP's successfully gapped: 5
Length of query: 312
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 211
Effective length of database: 12,583,923
Effective search space: 2655207753
Effective search space used: 2655207753
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001448
(938 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Su... 381 e-106
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 276 2e-74
Alignment gi|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797... 219 1e-57
Alignment gi|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polype... 167 6e-42
Alignment gi|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670... 112 2e-25
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 112 3e-25
Alignment gi|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6... 82 4e-16
Alignment gi|XP_001925619.2| PREDICTED: immunoglobulin iota chain-like [S... 77 2e-14
Alignment gi|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-l... 76 3e-14
Alignment gi|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6... 75 7e-14
>ref|NP_001230248.1| immunoglobulin lambda-like polypeptide 5 [Sus scrofa].
Length = 234
Score = 381 bits (978), Expect = e-106
Identities = 192/234 (82%), Positives = 198/234 (84%), Gaps = 1/234 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQTP 225
MAWTVLLIGLLAVGSGVDSQTVIQEPAMSVS GGTVTLTCAFSSGSVT+S+YP WFQQTP
Sbjct: 1 MAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSDYPGWFQQTP 60
Query: 226 GQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANI-FG 402
GQPPR +IY TN+RPTGVPSRFSGAISGNKA LTITGAQA DEADYFC L KS + FG
Sbjct: 61 GQPPRTVIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALRKSGGTVTFG 120
Query: 403 GGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXXXX 582
GGTH+TVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKA
Sbjct: 121 GGTHVTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVTQG 180
Query: 583 XXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 181 VETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 234
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 276 bits (705), Expect = 2e-74
Identities = 147/236 (62%), Positives = 165/236 (69%), Gaps = 3/236 (1%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT LL+ LL++ +G V S + Q P +SVS GGT ++TC G S Y W++Q
Sbjct: 1 MAWTPLLLPLLSLCTGYVASSQLTQPPGVSVSLGGTASITC---QGGNFGSYYAHWYKQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSS--ANI 396
PGQ P L+IY N R +G+P RFSG+ SGN A LTI+GAQA DEADY+C S +
Sbjct: 58 PGQSPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSDAGPL 117
Query: 397 FGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXXX 576
FG GT L+VL QPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKA
Sbjct: 118 FGRGTRLSVLRQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAGGTTVT 177
Query: 577 XXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
KPSKQSNNK DWKSSSGFTCQVTHEGTIVEKTVTPSECA
Sbjct: 178 QGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHEGTIVEKTVTPSECA 233
>ref|XP_003359211.1| PREDICTED: hypothetical protein LOC100622797 [Sus scrofa].
Length = 484
Score = 219 bits (559), Expect = 1e-57
Identities = 108/120 (90%), Positives = 112/120 (93%)
Frame = +1
Query: 34 SVPTMAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWF 213
SVPTMAWTVLLIGLLAVGSGVDSQTVIQEPAMSVS GGTVTLTCAFSSGSVT+SNYPSW+
Sbjct: 26 SVPTMAWTVLLIGLLAVGSGVDSQTVIQEPAMSVSLGGTVTLTCAFSSGSVTSSNYPSWY 85
Query: 214 QQTPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSAN 393
QQTPGQPPR LIY TN+RPTGVPSRFSGAISGNKA LTITGAQA DEADYFC LYK S +
Sbjct: 86 QQTPGQPPRQLIYSTNSRPTGVPSRFSGAISGNKATLTITGAQAEDEADYFCALYKGSGH 145
Score = 89.0 bits (219), Expect = 3e-18
Identities = 58/159 (36%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
+AW+ LL+ LLA +G +Q V+ Q P+ S S G VTL+C SS ++ N +W Q
Sbjct: 203 VAWSPLLLTLLAHCTGSWAQAVLTQPPSESGSLGQRVTLSCTGSSSNIGGGNSVNWSQPL 262
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSSANIFG 402
PG+ PR + N P +FSG SG+ LTITG QA D+A+Y+CT
Sbjct: 263 PGKVPRSVFTYANLMAIAAPDQFSGFKSGSSGTLTITGLQAEDDAEYYCT---------A 313
Query: 403 GGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLIS 519
GG L P+A V P + G+ ++C+IS
Sbjct: 314 GGDSLDGPTVPQARGQVRPKPAVPQPGGSLGRAILCIIS 352
>ref|XP_003133034.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 211
Score = 167 bits (424), Expect = 6e-42
Identities = 83/117 (70%), Positives = 86/117 (73%)
Frame = +1
Query: 394 IFGGGTHLTVLGQPKAAPTVNLFPPSSEELGTNKATLVCLISDFYPGAVTVTWKAXXXXX 573
+FGGGT LTVLGQPKAAPTV LFPPS EEL TNKATLVCLISDFYPGAVTVTWKA
Sbjct: 95 VFGGGTRLTVLGQPKAAPTVTLFPPSPEELSTNKATLVCLISDFYPGAVTVTWKAGGTTI 154
Query: 574 XXXXXXXKPSKQSNNKXXXXXXXXXXXXDWKSSSGFTCQVTHEGTIVEKTVTPSECA 744
+PSKQSNNK DWKSSSGFTCQVTH+G VEKTV PSECA
Sbjct: 155 TQGVDTSQPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTHQGNTVEKTVMPSECA 211
>ref|XP_003359213.1| PREDICTED: hypothetical protein LOC100623670 [Sus scrofa].
Length = 276
Score = 112 bits (281), Expect = 2e-25
Identities = 66/138 (47%), Positives = 83/138 (60%), Gaps = 4/138 (2%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAW LL+GLLA +G V S V Q P++SV+PG ++TC G+ W+QQ
Sbjct: 1 MAWIPLLLGLLAHCTGSVASYEVTQPPSVSVNPGQRASITC---EGNNIGRKDIQWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSS---AN 393
PGQ P L IY NRP+G+P RFS + SGN A LTI+GAQA DEADY+C Y S +
Sbjct: 58 PGQAPVLFIYEDTNRPSGIPERFSASKSGNTATLTISGAQAEDEADYYCQSYDDSYTPHS 117
Query: 394 IFGGGTHLTVLGQPKAAP 447
GGG G+P+ AP
Sbjct: 118 DTGGG------GRPRFAP 129
Score = 68.6 bits (166), Expect = 5e-12
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = +1
Query: 217 QTPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYF 366
Q PGQ P L+IY + RP G+P RFSG+ SGN A LTI+GAQA DEADY+
Sbjct: 145 QKPGQAPILVIYGGSLRPLGIPERFSGSSSGNSATLTISGAQAEDEADYY 194
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 112 bits (280), Expect = 3e-25
Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSG-VDSQTVIQEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MAWT LL+ LL++ +G V S + Q P +SVS GGT ++ C G S Y W+QQ
Sbjct: 1 MAWTPLLLPLLSLCTGYVASSKLTQPPGVSVSLGGTASIAC---QGDNFGSYYAHWYQQK 57
Query: 223 PGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC----TLYKSSA 390
PGQ P L+IY N R +G+P RFSG+ SGN A LTI+GAQA DEADY+C Y +
Sbjct: 58 PGQSPMLVIYEYNKRASGIPDRFSGSKSGNTATLTISGAQAEDEADYYCQSSDDSYTPHS 117
Query: 391 NIFGGG 408
+ GGG
Sbjct: 118 DTGGGG 123
>ref|XP_003354780.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 194
Score = 82.0 bits (201), Expect = 4e-16
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVI--QEP-AMSVSPGGTVTLTCAFSSGSVTTS-NYPSWF 213
M + L+GLL + S ++ Q P ++SVSPG +++C S + S N+ SW+
Sbjct: 1 MRFPAQLLGLLLLWVPGSSGAIVLTQSPLSLSVSPGAPASISCRSSQSLESYSYNFLSWY 60
Query: 214 QQTPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSS 387
QQ PGQ PRLLIY N+ +GVP RFSG+ SG L I+ +A D Y+C K S
Sbjct: 61 QQKPGQSPRLLIYFATNKASGVPDRFSGSGSGTDFTLKISRVEAEDAGVYYCQQNKES 118
>ref|XP_001925619.2| PREDICTED: immunoglobulin iota chain-like [Sus scrofa].
Length = 159
Score = 76.6 bits (187), Expect = 2e-14
Identities = 60/155 (38%), Positives = 82/155 (52%), Gaps = 9/155 (5%)
Frame = +1
Query: 46 MAWTVLLIGLLAVGSGVDSQTVI-QEPAMSVSPGGTVTLTCAFSSGSVTTSNYPSWFQQT 222
MA T LLI L +G SQ V+ Q P++S SPG + L C SSGS S + SW+Q+
Sbjct: 1 MARTPLLIVRLCHCTGSLSQAVLTQPPSLSASPGPSARLPCTLSSGSSVGSYHISWYQRK 60
Query: 223 PGQPP----RLLIYRTNNRPTGVPSRFSG--AISGNKAALTITGAQANDEADYFCTLYKS 384
PG+PP R + ++ +GVPS FSG S + L I+G Q D+AD C ++S
Sbjct: 61 PGRPPWYLLRFHFASSKDQGSGVPSCFSGDKDASAHAGLLLISGLQPEDKADCDCLNWQS 120
Query: 385 SANIFGGGTHLT--VLGQPKAAPTVNLFPPSSEEL 483
SA+ G L L P + LF +SE+L
Sbjct: 121 SASHCDTGFVLPPWTLTPPGCWVSPFLFSFNSEQL 155
>ref|XP_003354777.1| PREDICTED: ig kappa chain V-I region HK102-like [Sus scrofa].
Length = 121
Score = 75.9 bits (185), Expect = 3e-14
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Frame = +1
Query: 40 PTMAWTVLLIGLLAVGSGVDSQTVIQEPA-MSVSPGGTVTLTCAFSSGSVTTSNYPSWFQ 216
P ++LL+ L S + + Q PA ++ S G TV++TC S + + + +W+Q
Sbjct: 6 PMQLLSLLLLWLPGARSAIQ---LTQSPASLAASLGDTVSITCRASQ---SINKWLAWYQ 59
Query: 217 QTPGQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFCTLYKSS 387
Q G+ P+LLIY + +GVPSRF G+ SG LTI+G QA D A Y+C + S+
Sbjct: 60 QQAGKAPKLLIYSASTLQSGVPSRFKGSGSGTDFTLTISGLQAEDVATYYCQQHHSA 116
>ref|XP_003354778.1| PREDICTED: ig kappa chain V-II region RPMI 6410-like [Sus scrofa].
Length = 126
Score = 74.7 bits (182), Expect = 7e-14
Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 4/108 (3%)
Frame = +1
Query: 58 VLLIGLLAVGSGVDSQTVIQEP-AMSVSPGGTVTLTCAFSSGSVTTS---NYPSWFQQTP 225
+L + LL V + + Q P ++SVSPG +++C S+ S+ S NY +W+QQ P
Sbjct: 7 LLGLPLLWVPGSSGAIVLTQTPLSLSVSPGEPASISCR-STQSLRGSYGKNYLNWYQQKP 65
Query: 226 GQPPRLLIYRTNNRPTGVPSRFSGAISGNKAALTITGAQANDEADYFC 369
GQ P+LLIY NR +GVP RFSG+ SG L I +A D Y+C
Sbjct: 66 GQSPKLLIYWATNRASGVPDRFSGSRSGTDFTLKIIRLEAEDAGVYYC 113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,325,129
Number of extensions: 856531
Number of successful extensions: 5800
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5573
Number of HSP's successfully gapped: 21
Length of query: 312
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 213
Effective length of database: 8,879,129
Effective search space: 1891254477
Effective search space used: 1891254477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001448
(938 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 898 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 898 bits (453), Expect = 0.0
Identities = 453/453 (100%)
Strand = Plus / Minus
Query: 427 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423533 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52423474
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423473 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52423414
Query: 547 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423413 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52423354
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423353 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52423294
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423293 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52423234
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423233 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52423174
Query: 787 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctgcacctg 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52423173 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctgcacctg 52423114
Query: 847 tcaactcccaataaaccgtcctccttgtcattc 879
|||||||||||||||||||||||||||||||||
Sbjct: 52423113 tcaactcccaataaaccgtcctccttgtcattc 52423081
Score = 876 bits (442), Expect = 0.0
Identities = 451/453 (99%), Gaps = 2/453 (0%)
Strand = Plus / Plus
Query: 427 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539635 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 52539694
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539695 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52539754
Query: 547 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539755 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52539814
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539815 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52539874
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539875 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52539934
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539935 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52539994
Query: 787 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctgcacctg 846
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52539995 acccccgcgagggtct--ccccgcgaccctggtccagcccagcccttcctcctgcacctg 52540052
Query: 847 tcaactcccaataaaccgtcctccttgtcattc 879
|||||||||||||||||||||||||||||||||
Sbjct: 52540053 tcaactcccaataaaccgtcctccttgtcattc 52540085
Score = 783 bits (395), Expect = 0.0
Identities = 410/414 (99%), Gaps = 2/414 (0%)
Strand = Plus / Plus
Query: 427 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542749 ggtcagcccaaggccactcccacggtcaacctcttcccgccctcctctgaggagctcggc 52542808
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542809 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 52542868
Query: 547 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542869 acctggaaggcaggcagcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 52542928
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542929 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 52542988
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52542989 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 52543048
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52543049 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 52543108
Query: 787 acccccgcgagggtctccccccgcgaccctggtccagcccagcccttcctcctg 840
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 52543109 acccccgcgagggtct--ccccgcgaccctggtccagcccagcccttcctcctg 52543160
Score = 674 bits (340), Expect = 0.0
Identities = 427/455 (93%), Gaps = 7/455 (1%)
Strand = Plus / Minus
Query: 427 ggtcagcccaaggccgctcccacggtcaacctcttcccgccctcctctgaggagctcggc 486
||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||| ||
Sbjct: 53394324 ggtcagcccaaggccgcccccacagtcacgctcttcccgccctcccctgaggagctcagc 53394265
Query: 487 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394264 accaacaaggccaccctggtgtgtctaataagtgacttctacccgggcgccgtgacggtg 53394205
Query: 547 acctggaaggcaggcggcaccaccgtcacccagggcgtggagaccaccaagccctcgaaa 606
|||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||
Sbjct: 53394204 acctggaaggcaggcggcaccaccatcacccagggcgtggatacctcccagccctcgaaa 53394145
Query: 607 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394144 cagagcaacaacaagtacgcggccagcagctacctggccctgtccgccagtgactggaaa 53394085
Query: 667 tcttccagcggcttcacctgccaggtcacccacgaggggaccattgtggagaagacagtg 726
||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct: 53394084 tcttccagcggcttcacctgccaggtcacccaccaggggaacacagtggagaagacagtg 53394025
Query: 727 acgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 786
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53394024 atgccctccgagtgcgcctaggtccctgggcccccaccctcaggggcctggagccacagg 53393965
Query: 787 acccccgcgagggtctcccc--ccgcgaccctggtccagcccagcccttcctcctgcacc 844
|| |||| |||||||||||| | | |||||||| ||||||||||||||||||||
Sbjct: 53393964 actcccgtgagggtctccccctcaacaaccctggt-----ccagcccttcctcctgcacc 53393910
Query: 845 tgtcaactcccaataaaccgtcctccttgtcattc 879
|||||||||||||||||| ||||||||||||||||
Sbjct: 53393909 tgtcaactcccaataaactgtcctccttgtcattc 53393875
Score = 603 bits (304), Expect = e-170
Identities = 304/304 (100%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52287832 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52287891
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52287892 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 52287951
Query: 210 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52287952 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 52288011
Query: 270 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52288012 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 52288071
Query: 330 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52288072 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 52288131
Query: 390 taat 393
||||
Sbjct: 52288132 taat 52288135
Score = 563 bits (284), Expect = e-158
Identities = 299/304 (98%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274622 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52274681
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274682 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 52274741
Query: 210 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 269
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 52274742 gttccagcagacaccaggccagcctccccgacagctgatctacagcacaaacaaccgccc 52274801
Query: 270 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274802 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 52274861
Query: 330 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 389
|||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 52274862 cacgggggcccaggctgaggacgaggccgactacttctgtgctctgtataaaagtagtgc 52274921
Query: 390 taat 393
||||
Sbjct: 52274922 taat 52274925
Score = 515 bits (260), Expect = e-143
Identities = 293/304 (96%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52134698 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52134757
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52134758 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 52134817
Query: 210 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 269
|||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 52134818 gttccagcagacaccaggccagcctccccgacagctgatctaccaaacaaacagccgccc 52134877
Query: 270 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 329
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52134878 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52134937
Query: 330 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 389
|||||||||||||||| | |||||||||||||| |||||| ||||| | |||||||||||
Sbjct: 52134938 cacgggggcccaggctgaggacgaggccgactatttctgtgctctggagaaaagtagtgc 52134997
Query: 390 taat 393
||||
Sbjct: 52134998 taat 52135001
Score = 500 bits (252), Expect = e-139
Identities = 291/304 (95%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52117514 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52117573
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 52117574 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaactaccccagctg 52117633
Query: 210 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 269
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 52117634 gtaccagcagacaccaggccagcctccccgacagctgatctacagcacaaacagccgccc 52117693
Query: 270 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 329
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52117694 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52117753
Query: 330 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 389
|||||||||||||||| | |||||||||||||| |||||| |||||||||||||| || |
Sbjct: 52117754 cacgggggcccaggctgaggacgaggccgactatttctgtgctctgtataaaagttgtac 52117813
Query: 390 taat 393
||||
Sbjct: 52117814 taat 52117817
Score = 500 bits (252), Expect = e-139
Identities = 291/304 (95%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52205468 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 52205527
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 52205528 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccggctg 52205587
Query: 210 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 269
|| ||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 52205588 gtaccagcagacaccaggccagcctccccgacagctgatctaccaaacaaacagccgccc 52205647
Query: 270 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 329
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52205648 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52205707
Query: 330 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtgc 389
|||||||||||||||| | |||||||||||||| |||||| ||||| | |||||||||||
Sbjct: 52205708 cacgggggcccaggctgaggacgaggccgactatttctgtgctctggagaaaagtagtgc 52205767
Query: 390 taat 393
||||
Sbjct: 52205768 taat 52205771
Score = 490 bits (247), Expect = e-136
Identities = 280/291 (96%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52259105 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52259164
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 52259165 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaactacccaagctg 52259224
Query: 210 gttccagcagacaccaggccagcctccccgactgctgatctacagaacaaacaaccgccc 269
|| ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 52259225 gtaccagcagacaccaggccagcctccccgacagctgatctacagcacaaacagccgccc 52259284
Query: 270 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcaccat 329
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 52259285 gactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcaccat 52259344
Query: 330 cacgggggcccaggctaatgacgaggccgactacttctgtactctgtataa 380
|||||||||||||||| | ||||||||||||||||||||| ||||||||||
Sbjct: 52259345 cacgggggcccaggctgaggacgaggccgactacttctgtgctctgtataa 52259395
Score = 462 bits (233), Expect = e-127
Identities = 289/305 (94%), Gaps = 2/305 (0%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52246118 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52246177
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 52246178 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaactaccctggctg 52246237
Query: 210 gttccagcagacaccaggccagcctccccg-actgctgatctacagaacaaacaaccgcc 268
||||||||||||||||||||||||||| || |||| | |||||||| ||||||| |||||
Sbjct: 52246238 gttccagcagacaccaggccagcctcctcgaactg-ttatctacagcacaaacagccgcc 52246296
Query: 269 cgactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcacca 328
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52246297 cgactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcacca 52246356
Query: 329 tcacgggggcccaggctaatgacgaggccgactacttctgtactctgtataaaagtagtg 388
||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||
Sbjct: 52246357 tcacgggggcccaggctgaggacgaggccgactacttctgtgctctgtataaaagttgta 52246416
Query: 389 ctaat 393
|||||
Sbjct: 52246417 ctaat 52246421
Score = 426 bits (215), Expect = e-117
Identities = 271/287 (94%), Gaps = 2/287 (0%)
Strand = Plus / Plus
Query: 90 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcctggagggac 149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52229039 aggggtggattctcagactgtgatccaggagccggcgatgtcagtgtctcttggagggac 52229098
Query: 150 cgtcacactcacctgtgcctttagctctgggtcagtcactactagtaactaccccagctg 209
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct: 52229099 cgtcacactcacctgtgcctttagctctgggtcagtcactagtagtaacaaccctggctg 52229158
Query: 210 gttccagcagacaccaggccagcctccccg-actgctgatctacagaacaaacaaccgcc 268
||||||||||||||||||||||||||| || |||| | ||||| ||||||||||||||
Sbjct: 52229159 gttccagcagacaccaggccagcctcctcgaactg-ttatctatcaaacaaacaaccgcc 52229217
Query: 269 cgactggggtccccagtcgcttctctggagccatctctgggaacaaagccgccctcacca 328
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 52229218 cgactggggtccccagtcgcttctctggagccatctctgggaacaaagccaccctcacca 52229277
Query: 329 tcacgggggcccaggctaatgacgaggccgactacttctgtactctg 375
||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 52229278 tcacgggggcccaggctgaggacgaggccgactacttctgtgctctg 52229324
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52117333 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 52117392
Query: 67 atcgggctcctcgctgtcggctcagg 92
||||||||||||||||||||||||||
Sbjct: 52117393 atcgggctcctcgctgtcggctcagg 52117418
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52228859 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 52228918
Query: 67 atcgggctcctcgctgtcggctcagg 92
||||||||||||||||||||||||||
Sbjct: 52228919 atcgggctcctcgctgtcggctcagg 52228944
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52245938 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 52245997
Query: 67 atcgggctcctcgctgtcggctcagg 92
||||||||||||||||||||||||||
Sbjct: 52245998 atcgggctcctcgctgtcggctcagg 52246023
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52258925 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 52258984
Query: 67 atcgggctcctcgctgtcggctcagg 92
||||||||||||||||||||||||||
Sbjct: 52258985 atcgggctcctcgctgtcggctcagg 52259010
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52274442 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 52274501
Query: 67 atcgggctcctcgctgtcggctcagg 92
||||||||||||||||||||||||||
Sbjct: 52274502 atcgggctcctcgctgtcggctcagg 52274527
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52287652 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 52287711
Query: 67 atcgggctcctcgctgtcggctcagg 92
||||||||||||||||||||||||||
Sbjct: 52287712 atcgggctcctcgctgtcggctcagg 52287737
Score = 103 bits (52), Expect = 2e-19
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 52134519 aggaggctgaggaggccgcatcccaggagtgtccccaccatggcctagacggtgcttctg 52134578
Score = 103 bits (52), Expect = 2e-19
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 7 aggaggctgaggaggccgcgtcccaggagtgtccccaccatggcctggacggtgcttctg 66
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 52205289 aggaggctgaggaggccgcatcccaggagtgtccccaccatggcctagacggtgcttctg 52205348
Score = 79.8 bits (40), Expect = 2e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 390 taatattttcggcggtgggacccatctgaccgtcctcggt 429
||||||||||||||||||||||||||||||||||||||||
Sbjct: 52424873 taatattttcggcggtgggacccatctgaccgtcctcggt 52424834
Score = 71.9 bits (36), Expect = 6e-10
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 390 taatattttcggcggtgggacccatctgaccgtcctcggt 429
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 52541409 taatattttcggcggagggacccatctgaccgtcctcggt 52541448
Score = 65.9 bits (33), Expect = 4e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 397 ttcggcggtgggacccatctgaccgtcctcggt 429
|||||||||||||||||||||||||||||||||
Sbjct: 52421750 ttcggcggtgggacccatctgaccgtcctcggt 52421718
Score = 60.0 bits (30), Expect = 2e-06
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 320 ccctcaccatcacgggggcccaggctaatgacgaggccgactacttctgt 369
|||| |||||||| |||||||||||| | |||||||||||||||| ||||
Sbjct: 52398645 ccctgaccatcactggggcccaggctgaggacgaggccgactactactgt 52398694
Score = 60.0 bits (30), Expect = 2e-06
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 850 actcccaataaaccgtcctccttgtcattc 879
||||||||||||||||||||||||||||||
Sbjct: 52426220 actcccaataaaccgtcctccttgtcattc 52426191
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,756,686
Number of extensions: 188
Number of successful extensions: 188
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 27
Length of query: 938
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 917
Effective length of database: 2,808,413,156
Effective search space: 2575314864052
Effective search space used: 2575314864052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)