Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001450
(1048 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092446.1| uridine phosphorylase 1 [Bos taurus]. 429 e-120
Alignment gi|NP_001069511.1| uridine phosphorylase 2 [Bos taurus]. 309 2e-84
>ref|NP_001092446.1| uridine phosphorylase 1 [Bos taurus].
Length = 309
Score = 429 bits (1102), Expect = e-120
Identities = 208/261 (79%), Positives = 227/261 (86%)
Frame = +1
Query: 265 MASAGAETKKLGNDNDFVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGS 444
MAS AET+K + ND V+L NPH+A MKED+LYHFSLST THDFPAMFGDVKFVCVGGS
Sbjct: 1 MASTAAETEKPEDHNDLVQLCNPHIAAMKEDILYHFSLSTSTHDFPAMFGDVKFVCVGGS 60
Query: 445 PSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLHE 624
PSRMKAFI+YVA+ELG PGADYPNIC GTDRYAMFKVGPVLSVSHGMG+PSIAIMLHE
Sbjct: 61 PSRMKAFIKYVAMELGFAHPGADYPNICEGTDRYAMFKVGPVLSVSHGMGVPSIAIMLHE 120
Query: 625 LIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRSTH 804
LIKLLYHA C LEPGSVVITRQAVDPCFKPEFEQ+VLGKR VR+T
Sbjct: 121 LIKLLYHAHCSGVTLIRIGTSGGIGLEPGSVVITRQAVDPCFKPEFEQIVLGKREVRNTD 180
Query: 805 LDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAHA 984
LDE L++ELA+CSA+LGEFPTVVGNTMCTLDFYEGQGRLDGALCSY EKDK++YL AA+A
Sbjct: 181 LDEQLVQELARCSAELGEFPTVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQDYLRAAYA 240
Query: 985 AGVRNIEMESSVFAAMCNACG 1047
AG+RNIEME+SVFAAMCNACG
Sbjct: 241 AGIRNIEMEASVFAAMCNACG 261
>ref|NP_001069511.1| uridine phosphorylase 2 [Bos taurus].
Length = 320
Score = 309 bits (792), Expect = 2e-84
Identities = 150/245 (61%), Positives = 179/245 (73%)
Frame = +1
Query: 313 FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAVELG 492
FV + NP+L +M EDVLYH L T TH+ P MFGDVKFVCVGGSP+RMKAF ++ EL
Sbjct: 24 FVHVKNPYLDSMDEDVLYHLDLGTKTHNLPEMFGDVKFVCVGGSPNRMKAFALFMHKELR 83
Query: 493 LDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCXXXXXX 672
L D +IC GTDRY M+K+GPVLS+SHGMGIPSI+IMLHELIKLLYHARC
Sbjct: 84 LTDSEEDIKDICAGTDRYCMYKIGPVLSISHGMGIPSISIMLHELIKLLYHARCSDVIII 143
Query: 673 XXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADL 852
+ PGSVVIT +AVD FKP FEQV+L V RST LD+ L EE+ CS ++
Sbjct: 144 RIGTSGGIGIAPGSVVITDEAVDSFFKPRFEQVILDNIVTRSTELDKELAEEIFNCSKEI 203
Query: 853 GEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAHAAGVRNIEMESSVFAAM 1032
FPT++G+TMCT DFYEGQGRLDGALCS++ + +YL A+ AG+RNIEMES+VFAAM
Sbjct: 204 SNFPTLIGHTMCTYDFYEGQGRLDGALCSFSREKGLDYLKRAYNAGIRNIEMESTVFAAM 263
Query: 1033 CNACG 1047
C CG
Sbjct: 264 CRLCG 268
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,864,369
Number of extensions: 997065
Number of successful extensions: 4508
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4501
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,273,310
Effective search space: 3511234260
Effective search space used: 3511234260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001450
(1048 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537889.2| PREDICTED: similar to uridine phosphorylase 1 [... 380 e-105
>ref|XP_537889.2| PREDICTED: similar to uridine phosphorylase 1 [Canis familiaris].
Length = 315
Score = 380 bits (976), Expect = e-105
Identities = 186/262 (70%), Positives = 215/262 (82%), Gaps = 1/262 (0%)
Frame = +1
Query: 265 MASAGAETKKLGNDND-FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGG 441
MAS+G++TK GN + FV+ +NP++ATM EDVLYH SLST THD PAMFGDVKFVCVGG
Sbjct: 1 MASSGSQTKTRGNHSGHFVQPANPNVATMPEDVLYHLSLSTSTHDLPAMFGDVKFVCVGG 60
Query: 442 SPSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLH 621
SP+RM+AF +Y+A ELGLD PGA+YPNIC GTDRYAMFKVGPVLSVSHG+GIPS ++MLH
Sbjct: 61 SPTRMEAFAKYMAKELGLDHPGAEYPNICAGTDRYAMFKVGPVLSVSHGIGIPSTSVMLH 120
Query: 622 ELIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRST 801
E+IKLLYHARC LEPGSVV+T+QAVD F P FEQ+VLGKRVV+ T
Sbjct: 121 EVIKLLYHARCSDVTVIRIGTSGGIGLEPGSVVVTQQAVDASFSPMFEQMVLGKRVVQRT 180
Query: 802 HLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAH 981
LD+ L +EL QC+ DL EFPTV+ TMCT DFYEGQGRLDGALCSY EKDK++YL AAH
Sbjct: 181 DLDQELAKELMQCATDLPEFPTVLAKTMCTSDFYEGQGRLDGALCSYTEKDKQDYLRAAH 240
Query: 982 AAGVRNIEMESSVFAAMCNACG 1047
AAG+RNIEMESSV AAMC+ACG
Sbjct: 241 AAGIRNIEMESSVLAAMCSACG 262
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,511,613
Number of extensions: 1028101
Number of successful extensions: 4623
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4610
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 245
Effective length of database: 15,407,560
Effective search space: 3774852200
Effective search space used: 3774852200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001450
(1048 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_853628.1| uridine phosphorylase 1 [Homo sapiens]. 387 e-108
Alignment gi|NP_003355.1| uridine phosphorylase 1 [Homo sapiens]. 387 e-108
Alignment gi|NP_775491.1| uridine phosphorylase 2 isoform a [Homo sapiens]. 308 4e-84
Alignment gi|NP_001128570.1| uridine phosphorylase 2 isoform b [Homo sapi... 308 4e-84
>ref|NP_853628.1| uridine phosphorylase 1 [Homo sapiens].
Length = 310
Score = 387 bits (994), Expect = e-108
Identities = 191/262 (72%), Positives = 216/262 (82%), Gaps = 1/262 (0%)
Frame = +1
Query: 265 MASAGAETKKLGNDNDF-VRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGG 441
MA+ GA +K + ND VRL NP++A MKED+LYHF+L+T H+FPA+FGDVKFVCVGG
Sbjct: 1 MAATGANAEKAESHNDCPVRLLNPNIAKMKEDILYHFNLTTSRHNFPALFGDVKFVCVGG 60
Query: 442 SPSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLH 621
SPSRMKAFI+ V ELGLD PG DYPNIC GTDRYAM+KVGPVLSVSHGMGIPSI+IMLH
Sbjct: 61 SPSRMKAFIRCVGAELGLDCPGRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLH 120
Query: 622 ELIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRST 801
ELIKLLY+ARC LEPG+VVIT QAVD CFK EFEQ+VLGKRV+R T
Sbjct: 121 ELIKLLYYARCSNVTIIRIGTSGGIGLEPGTVVITEQAVDTCFKAEFEQIVLGKRVIRKT 180
Query: 802 HLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAH 981
L++ L++EL CSA+L EF TVVGNTMCTLDFYEGQGRLDGALCSY EKDK+ YL AA+
Sbjct: 181 DLNKKLVQELLLCSAELSEFTTVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQAYLEAAY 240
Query: 982 AAGVRNIEMESSVFAAMCNACG 1047
AAGVRNIEMESSVFAAMC+ACG
Sbjct: 241 AAGVRNIEMESSVFAAMCSACG 262
>ref|NP_003355.1| uridine phosphorylase 1 [Homo sapiens].
Length = 310
Score = 387 bits (994), Expect = e-108
Identities = 191/262 (72%), Positives = 216/262 (82%), Gaps = 1/262 (0%)
Frame = +1
Query: 265 MASAGAETKKLGNDNDF-VRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGG 441
MA+ GA +K + ND VRL NP++A MKED+LYHF+L+T H+FPA+FGDVKFVCVGG
Sbjct: 1 MAATGANAEKAESHNDCPVRLLNPNIAKMKEDILYHFNLTTSRHNFPALFGDVKFVCVGG 60
Query: 442 SPSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLH 621
SPSRMKAFI+ V ELGLD PG DYPNIC GTDRYAM+KVGPVLSVSHGMGIPSI+IMLH
Sbjct: 61 SPSRMKAFIRCVGAELGLDCPGRDYPNICAGTDRYAMYKVGPVLSVSHGMGIPSISIMLH 120
Query: 622 ELIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRST 801
ELIKLLY+ARC LEPG+VVIT QAVD CFK EFEQ+VLGKRV+R T
Sbjct: 121 ELIKLLYYARCSNVTIIRIGTSGGIGLEPGTVVITEQAVDTCFKAEFEQIVLGKRVIRKT 180
Query: 802 HLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAH 981
L++ L++EL CSA+L EF TVVGNTMCTLDFYEGQGRLDGALCSY EKDK+ YL AA+
Sbjct: 181 DLNKKLVQELLLCSAELSEFTTVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQAYLEAAY 240
Query: 982 AAGVRNIEMESSVFAAMCNACG 1047
AAGVRNIEMESSVFAAMC+ACG
Sbjct: 241 AAGVRNIEMESSVFAAMCSACG 262
>ref|NP_775491.1| uridine phosphorylase 2 isoform a [Homo sapiens].
Length = 317
Score = 308 bits (790), Expect = 4e-84
Identities = 151/245 (61%), Positives = 178/245 (72%)
Frame = +1
Query: 313 FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAVELG 492
FV + NP+L M ED+LYH L T TH+ PAMFGDVKFVCVGGSP+RMKAF ++ ELG
Sbjct: 24 FVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELG 83
Query: 493 LDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCXXXXXX 672
+ D +IC GTDRY M+K GPVL++SHGMGIPSI+IMLHELIKLL+HARC
Sbjct: 84 FEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTII 143
Query: 673 XXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADL 852
+ PG+VVIT AVD FKP FEQV+L V RST LD+ L EEL CS ++
Sbjct: 144 RIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELFNCSKEI 203
Query: 853 GEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAHAAGVRNIEMESSVFAAM 1032
FPT+VG+TMCT DFYEGQGRLDGALCS++ + K +YL A AGVRNIEMES+VFAAM
Sbjct: 204 PNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAM 263
Query: 1033 CNACG 1047
C CG
Sbjct: 264 CGLCG 268
>ref|NP_001128570.1| uridine phosphorylase 2 isoform b [Homo sapiens].
Length = 374
Score = 308 bits (790), Expect = 4e-84
Identities = 151/245 (61%), Positives = 178/245 (72%)
Frame = +1
Query: 313 FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAVELG 492
FV + NP+L M ED+LYH L T TH+ PAMFGDVKFVCVGGSP+RMKAF ++ ELG
Sbjct: 81 FVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELG 140
Query: 493 LDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCXXXXXX 672
+ D +IC GTDRY M+K GPVL++SHGMGIPSI+IMLHELIKLL+HARC
Sbjct: 141 FEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTII 200
Query: 673 XXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADL 852
+ PG+VVIT AVD FKP FEQV+L V RST LD+ L EEL CS ++
Sbjct: 201 RIGTSGGIGIAPGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELFNCSKEI 260
Query: 853 GEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAHAAGVRNIEMESSVFAAM 1032
FPT+VG+TMCT DFYEGQGRLDGALCS++ + K +YL A AGVRNIEMES+VFAAM
Sbjct: 261 PNFPTLVGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAM 320
Query: 1033 CNACG 1047
C CG
Sbjct: 321 CGLCG 325
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,608,286
Number of extensions: 1003201
Number of successful extensions: 4313
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4297
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 246
Effective length of database: 14,901,872
Effective search space: 3665860512
Effective search space used: 3665860512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001450
(1048 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001152874.1| uridine phosphorylase 1 [Mus musculus]. 403 e-112
Alignment gi|NP_001152873.1| uridine phosphorylase 1 [Mus musculus]. 403 e-112
Alignment gi|NP_033503.2| uridine phosphorylase 1 [Mus musculus]. 403 e-112
Alignment gi|NP_083968.1| uridine phosphorylase 2 [Mus musculus]. 307 1e-83
>ref|NP_001152874.1| uridine phosphorylase 1 [Mus musculus].
Length = 311
Score = 403 bits (1036), Expect = e-112
Identities = 196/263 (74%), Positives = 219/263 (83%), Gaps = 2/263 (0%)
Frame = +1
Query: 265 MASAGAETKKLGNDND--FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVG 438
MA+ G E K L N ++ F++LSNP++A MKEDVLYHF+LST THDFPAMFGDVKFVCVG
Sbjct: 1 MAATGTEAKDLENHHNDCFIQLSNPNIAAMKEDVLYHFNLSTSTHDFPAMFGDVKFVCVG 60
Query: 439 GSPSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIML 618
GS SRM FI+YVA ELGLD PG +YPNIC GTDRYAM+K GPVLSVSHGMGIPSI IML
Sbjct: 61 GSSSRMNTFIKYVAAELGLDHPGKEYPNICAGTDRYAMYKAGPVLSVSHGMGIPSIGIML 120
Query: 619 HELIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRS 798
HELIK+LYHARC LEPGSVVIT+QAV+ CFKPEFEQ+VLGKRV+R+
Sbjct: 121 HELIKMLYHARCSNITIIRIGTSGGIGLEPGSVVITQQAVNECFKPEFEQIVLGKRVIRN 180
Query: 799 THLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAA 978
T+LD L++EL QCS+DL EFP VVGNTMCTLDFYEGQGRLDGALCSY EKDK+ YL AA
Sbjct: 181 TNLDAQLVQELVQCSSDLNEFPMVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQSYLRAA 240
Query: 979 HAAGVRNIEMESSVFAAMCNACG 1047
HAAGVRNIEMESSVFA MC+ACG
Sbjct: 241 HAAGVRNIEMESSVFATMCSACG 263
>ref|NP_001152873.1| uridine phosphorylase 1 [Mus musculus].
Length = 311
Score = 403 bits (1036), Expect = e-112
Identities = 196/263 (74%), Positives = 219/263 (83%), Gaps = 2/263 (0%)
Frame = +1
Query: 265 MASAGAETKKLGNDND--FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVG 438
MA+ G E K L N ++ F++LSNP++A MKEDVLYHF+LST THDFPAMFGDVKFVCVG
Sbjct: 1 MAATGTEAKDLENHHNDCFIQLSNPNIAAMKEDVLYHFNLSTSTHDFPAMFGDVKFVCVG 60
Query: 439 GSPSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIML 618
GS SRM FI+YVA ELGLD PG +YPNIC GTDRYAM+K GPVLSVSHGMGIPSI IML
Sbjct: 61 GSSSRMNTFIKYVAAELGLDHPGKEYPNICAGTDRYAMYKAGPVLSVSHGMGIPSIGIML 120
Query: 619 HELIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRS 798
HELIK+LYHARC LEPGSVVIT+QAV+ CFKPEFEQ+VLGKRV+R+
Sbjct: 121 HELIKMLYHARCSNITIIRIGTSGGIGLEPGSVVITQQAVNECFKPEFEQIVLGKRVIRN 180
Query: 799 THLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAA 978
T+LD L++EL QCS+DL EFP VVGNTMCTLDFYEGQGRLDGALCSY EKDK+ YL AA
Sbjct: 181 TNLDAQLVQELVQCSSDLNEFPMVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQSYLRAA 240
Query: 979 HAAGVRNIEMESSVFAAMCNACG 1047
HAAGVRNIEMESSVFA MC+ACG
Sbjct: 241 HAAGVRNIEMESSVFATMCSACG 263
>ref|NP_033503.2| uridine phosphorylase 1 [Mus musculus].
Length = 311
Score = 403 bits (1036), Expect = e-112
Identities = 196/263 (74%), Positives = 219/263 (83%), Gaps = 2/263 (0%)
Frame = +1
Query: 265 MASAGAETKKLGNDND--FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVG 438
MA+ G E K L N ++ F++LSNP++A MKEDVLYHF+LST THDFPAMFGDVKFVCVG
Sbjct: 1 MAATGTEAKDLENHHNDCFIQLSNPNIAAMKEDVLYHFNLSTSTHDFPAMFGDVKFVCVG 60
Query: 439 GSPSRMKAFIQYVAVELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIML 618
GS SRM FI+YVA ELGLD PG +YPNIC GTDRYAM+K GPVLSVSHGMGIPSI IML
Sbjct: 61 GSSSRMNTFIKYVAAELGLDHPGKEYPNICAGTDRYAMYKAGPVLSVSHGMGIPSIGIML 120
Query: 619 HELIKLLYHARCXXXXXXXXXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRS 798
HELIK+LYHARC LEPGSVVIT+QAV+ CFKPEFEQ+VLGKRV+R+
Sbjct: 121 HELIKMLYHARCSNITIIRIGTSGGIGLEPGSVVITQQAVNECFKPEFEQIVLGKRVIRN 180
Query: 799 THLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAA 978
T+LD L++EL QCS+DL EFP VVGNTMCTLDFYEGQGRLDGALCSY EKDK+ YL AA
Sbjct: 181 TNLDAQLVQELVQCSSDLNEFPMVVGNTMCTLDFYEGQGRLDGALCSYTEKDKQSYLRAA 240
Query: 979 HAAGVRNIEMESSVFAAMCNACG 1047
HAAGVRNIEMESSVFA MC+ACG
Sbjct: 241 HAAGVRNIEMESSVFATMCSACG 263
>ref|NP_083968.1| uridine phosphorylase 2 [Mus musculus].
Length = 320
Score = 307 bits (786), Expect = 1e-83
Identities = 151/244 (61%), Positives = 177/244 (72%)
Frame = +1
Query: 316 VRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAVELGL 495
V + NP+L M ED+LYH L T TH+ PAMFGDVKFVCVGGSP+RMKAF Q++ EL L
Sbjct: 25 VYVKNPYLEGMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFAQFMHKELRL 84
Query: 496 DVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCXXXXXXX 675
+ G D +IC GTDRY MFK GPVLSVSHGMGIPSI+IMLHELIKLL+HA C
Sbjct: 85 EGDGEDIEDICAGTDRYCMFKTGPVLSVSHGMGIPSISIMLHELIKLLHHAHCCDVTIIR 144
Query: 676 XXXXXXXXLEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADLG 855
+ PGSVVIT AVD FKP FEQV+L V RST LD+ L +L CS ++
Sbjct: 145 IGTSGGIGIAPGSVVITDTAVDSFFKPRFEQVILDNVVTRSTELDKELANDLFNCSREIP 204
Query: 856 EFPTVVGNTMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAHAAGVRNIEMESSVFAAMC 1035
PT++G+TMCT DFYEGQGRLDGALCS++ + K +YL A+ AGVRNIEMES+VFAAMC
Sbjct: 205 NVPTLIGHTMCTYDFYEGQGRLDGALCSFSREKKLDYLKRAYRAGVRNIEMESTVFAAMC 264
Query: 1036 NACG 1047
CG
Sbjct: 265 GLCG 268
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,526,322
Number of extensions: 831236
Number of successful extensions: 3525
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3514
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 247
Effective length of database: 12,553,887
Effective search space: 3100810089
Effective search space used: 3100810089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001450
(1048 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361601.1| PREDICTED: uridine phosphorylase 1-like [Sus... 221 5e-58
Alignment gi|XP_003133467.2| PREDICTED: uridine phosphorylase 2-like [Sus... 153 2e-37
Alignment gi|XP_003359573.1| PREDICTED: uridine phosphorylase 2-like [Sus... 120 2e-27
>ref|XP_003361601.1| PREDICTED: uridine phosphorylase 1-like [Sus scrofa].
Length = 507
Score = 221 bits (563), Expect = 5e-58
Identities = 106/117 (90%), Positives = 107/117 (91%)
Frame = +1
Query: 304 DNDFVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAV 483
D+DFVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVA
Sbjct: 45 DSDFVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAX 104
Query: 484 ELGLDVPGADYPNICVGTDRYAMFKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARC 654
PGADYPNICVGTDRYAMFKVGPVL HGMGIPSIAIMLHELIKLLYHARC
Sbjct: 105 XXXXXXPGADYPNICVGTDRYAMFKVGPVLCFQHGMGIPSIAIMLHELIKLLYHARC 161
Score = 195 bits (495), Expect = 4e-50
Identities = 94/94 (100%), Positives = 94/94 (100%)
Frame = +1
Query: 733 AVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQ 912
AVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQ
Sbjct: 321 AVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADLGEFPTVVGNTMCTLDFYEGQ 380
Query: 913 GRLDGALCSYAEKDKREYLNAAHAAGVRNIEMES 1014
GRLDGALCSYAEKDKREYLNAAHAAGVRNIEMES
Sbjct: 381 GRLDGALCSYAEKDKREYLNAAHAAGVRNIEMES 414
>ref|XP_003133467.2| PREDICTED: uridine phosphorylase 2-like [Sus scrofa].
Length = 183
Score = 153 bits (386), Expect = 2e-37
Identities = 71/116 (61%), Positives = 90/116 (77%)
Frame = +1
Query: 700 LEPGSVVITRQAVDPCFKPEFEQVVLGKRVVRSTHLDEPLMEELAQCSADLGEFPTVVGN 879
+ PGSVVIT +AVD FKP+FEQV+L + RST LD+ L EEL CS ++ +FPT++G+
Sbjct: 19 IAPGSVVITDKAVDSFFKPQFEQVILDDTITRSTELDKELAEELLNCSKEIPDFPTLIGH 78
Query: 880 TMCTLDFYEGQGRLDGALCSYAEKDKREYLNAAHAAGVRNIEMESSVFAAMCNACG 1047
TMCT DFYEGQGRLDGALCS++ + +YL A+ AG+RNIEME +VFAAMC CG
Sbjct: 79 TMCTHDFYEGQGRLDGALCSFSREKGLDYLKRAYNAGIRNIEMECTVFAAMCRLCG 134
>ref|XP_003359573.1| PREDICTED: uridine phosphorylase 2-like [Sus scrofa].
Length = 181
Score = 120 bits (300), Expect = 2e-27
Identities = 55/90 (61%), Positives = 68/90 (75%)
Frame = +1
Query: 313 FVRLSNPHLATMKEDVLYHFSLSTGTHDFPAMFGDVKFVCVGGSPSRMKAFIQYVAVELG 492
FV + NP+L +M ED+LYH L T TH+ PAMFGDVKFVCVGGSP+RMKAF ++ EL
Sbjct: 24 FVHVKNPYLDSMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELR 83
Query: 493 LDVPGADYPNICVGTDRYAMFKVGPVLSVS 582
L+ D +IC GTDRY M+K+GPVLS+S
Sbjct: 84 LEDSEEDIKDICAGTDRYCMYKIGPVLSIS 113
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,455,761
Number of extensions: 642426
Number of successful extensions: 2982
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2976
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 249
Effective length of database: 8,854,232
Effective search space: 2204703768
Effective search space used: 2204703768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001450
(1048 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894763.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 349 2e-93
>gb|GL894763.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3396
Length = 21671
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Minus
Query: 733 gcggtggacccctgcttcaagccagagttcgagcaggtggtcctcgggaagcgggtggtc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8041 gcggtggacccctgcttcaagccagagttcgagcaggtggtcctcgggaagcgggtggtc 7982
Query: 793 cgcagcacccacctggatgagccgctgatggaggagctggcgcagtgctccgcggacctg 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7981 cgcagcacccacctggatgagccgctgatggaggagctggcgcagtgctccgcggacctg 7922
Query: 853 ggcgagttccccacggtggtgggcaacaccatgtgcaccctggacttctacgaagg 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7921 ggcgagttccccacggtggtgggcaacaccatgtgcaccctggacttctacgaagg 7866
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 583 cacgggatgggcatcccctccattgccatcatgctgcacgagctcatcaagctgctgtac 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11176 cacgggatgggcatcccctccattgccatcatgctgcacgagctcatcaagctgctgtac 11117
Query: 643 cacgcgcggtgctccggcgtcaccatcatccgcatcggcacctctggcgggataggtc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11116 cacgcgcggtgctccggcgtcaccatcatccgcatcggcacctctggcgggataggtc 11059
Score = 230 bits (116), Expect = 1e-57
Identities = 119/120 (99%)
Strand = Plus / Minus
Query: 304 gacaatgacttcgtacggctgagcaatccccacttagcaacgatgaaggaagacgttctg 363
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14294 gacagtgacttcgtacggctgagcaatccccacttagcaacgatgaaggaagacgttctg 14235
Query: 364 taccatttcagcctcagcacgggcacccacgatttcccggctatgtttggagatgtgaag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14234 taccatttcagcctcagcacgggcacccacgatttcccggctatgtttggagatgtgaag 14175
Score = 204 bits (103), Expect = 7e-50
Identities = 109/111 (98%)
Strand = Plus / Minus
Query: 906 agggcaaggccgcctggacggcgctctctgctcctacgcggagaaggataagcgggagta 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7506 agggcaaggccgcctggacggcgctctctgctcctacgcggagaaggataagcgggagta 7447
Query: 966 cctgaacgcggcccacgcagctggcgtccggaacatcgagatggaatcgtc 1016
||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 7446 cctgaacgcggcccacgcagctggcgtgcgcaacatcgagatggaatcgtc 7396
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 499 gtcccaggcgcagactatcccaacatctgtgtgggcaccgaccgctatgccatgtttaaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12344 gtcccaggcgcagactatcccaacatctgtgtgggcaccgaccgctatgccatgtttaaa 12285
Query: 559 gtgggcccggtgctg 573
|||||||||||||||
Sbjct: 12284 gtgggcccggtgctg 12270
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 244 gggtcctgcctcagttgagagatggcctctgcaggggctgaaacaaagaaacttggaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17244 gggtcctgcctcagttgagagatggcctctgcaggggctgaaacaaagaaacttggaaat 17185
Query: 304 gacaa 308
|||||
Sbjct: 17184 gacaa 17180
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 422 agtttgtgtgcgtcgggggaagcccttcccggatgaaagccttcatccagtacgtggcc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12503 agtttgtgtgcgtcgggggaagcccttcccggatgaaagccttcatccagtacgtggcc 12445
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,480,414
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 7
Length of query: 1048
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1027
Effective length of database: 2,808,413,156
Effective search space: 2884240311212
Effective search space used: 2884240311212
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)