Animal-Genome cDNA 20110601C-001455

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001455
         (1478 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001075044.1| desmin [Bos taurus].                              636   0.0  
Alignment   gi|NP_776394.2| vimentin [Bos taurus].                               435   e-122
Alignment   gi|NP_001095848.1| peripherin [Bos taurus].                          407   e-113
Alignment   gi|NP_776490.2| glial fibrillary acidic protein [Bos taurus].        389   e-108
Alignment   gi|NP_001069426.1| alpha-internexin [Bos taurus].                    304   2e-82
Alignment   gi|NP_776546.1| neurofilament light polypeptide [Bos taurus].        289   5e-78
Alignment   gi|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide...   263   4e-70
Alignment   gi|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [B...   263   4e-70
Alignment   gi|XP_001252037.1| PREDICTED: neurofilament triplet M protein [...   263   4e-70
Alignment   gi|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide ...   221   2e-57

>ref|NP_001075044.1| desmin [Bos taurus].
          Length = 470

 Score =  636 bits (1640), Expect(2) = 0.0
 Identities = 349/415 (84%), Positives = 351/415 (84%), Gaps = 1/415 (0%)
 Frame = +1

Query: 202  RAGFGTKGSSSSVTSRVYQVSRTXXXXXXXXXXXXXXXXXTRVPSSSYGAGELLDFSLAD 381
            RAGFGTKGSSSSVTSRVYQVSRT                 TRVPSS YGAGELLDFSLAD
Sbjct: 37   RAGFGTKGSSSSVTSRVYQVSRTSGGAGGLGALRASRLGSTRVPSS-YGAGELLDFSLAD 95

Query: 382  AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTXXXXXX 561
            AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT      
Sbjct: 96   AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTRVAEIY 155

Query: 562  XXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 741
                          TNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV
Sbjct: 156  EEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 215

Query: 742  DAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKPDLTAALR 921
            DAATLARIDLERRIESLNEEIAFLKKVH                   MDMSKPDLTAALR
Sbjct: 216  DAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALR 275

Query: 922  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 1101
            DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI
Sbjct: 276  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 335

Query: 1102 DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 1281
            DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK
Sbjct: 336  DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 395

Query: 1282 MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ-GF*GPYXETVMIQT 1443
            MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ G      +TVMI+T
Sbjct: 396  MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRGSEVHTKKTVMIKT 450



 Score = 26.6 bits (57), Expect(2) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVVSEA
Sbjct: 451  IETRDGEVVSEA 462


>ref|NP_776394.2| vimentin [Bos taurus].
          Length = 466

 Score =  435 bits (1119), Expect = e-122
 Identities = 220/344 (63%), Positives = 269/344 (78%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            Q+ TCE+DALKGTN+SL RQMRE+E+ F+ EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QTLTCEVDALKGTNESLERQMREMEENFSVEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI+LP+  FS+LN RET+
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427


>ref|NP_001095848.1| peripherin [Bos taurus].
          Length = 469

 Score =  407 bits (1046), Expect = e-113
 Identities = 216/365 (59%), Positives = 269/365 (73%), Gaps = 7/365 (1%)
 Frame = +1

Query: 325  RVPSSSYGA-----GELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQ 489
            R P +  GA      E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQ
Sbjct: 60   RGPRAGTGALLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQ 119

Query: 490  QNAALAAEVNRLKGREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLK 669
            QNAAL  E+N+ +G+EP                       +R RV VERD L +DL  LK
Sbjct: 120  QNAALRGELNQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALK 179

Query: 670  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 849
             +L+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H        
Sbjct: 180  QRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQ 239

Query: 850  XXXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANK 1023
                          +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+
Sbjct: 240  LSVESQQVQHVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANR 299

Query: 1024 NNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIAR 1203
            N++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   AR
Sbjct: 300  NHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAR 359

Query: 1204 LEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            LEEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 360  LEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIK 419

Query: 1384 ETSPE 1398
             T PE
Sbjct: 420  TTVPE 424


>ref|NP_776490.2| glial fibrillary acidic protein [Bos taurus].
          Length = 428

 Score =  389 bits (998), Expect = e-108
 Identities = 200/344 (58%), Positives = 251/344 (72%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 46   VDFSLAGALNSGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 105

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDNL  DL  L+ KLQ+E   + EAENNL
Sbjct: 106  TKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLGTLRQKLQDETNQRLEAENNL 165

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            AA+R + D ATLAR+DLER+IESL EEI FL+K+H                   MD++KP
Sbjct: 166  AAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLAQQQVHVEMDVAKP 225

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALR+IR QYE +A+ N+ EAEEWY+SK +DL  AA +N + LRQAK E  +YR Q+
Sbjct: 226  DLTAALREIRTQYEAVASSNMHEAEEWYRSKFADLNDAAARNAELLRQAKHEANDYRRQL 285

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ +ARLEEE + LKDEMARHL+EY
Sbjct: 286  QALTCDLESLRGTNESLERQMREQEERHAREAASYQEALARLEEEGQSLKDEMARHLQEY 345

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 346  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 389


>ref|NP_001069426.1| alpha-internexin [Bos taurus].
          Length = 499

 Score =  304 bits (778), Expect = 2e-82
 Identities = 167/348 (47%), Positives = 234/348 (67%), Gaps = 5/348 (1%)
 Frame = +1

Query: 349  AGELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLK 528
            A + LD S A A   E+   RTNEK +LQ LNDRFA +IEKV  LE QN AL AE+  L+
Sbjct: 71   ASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALR 130

Query: 529  GR--EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKE 702
             R  EP+                    ++ RA+  +ERD L +++QRL+A+ +EE + +E
Sbjct: 131  QRHAEPSRVGELFQRELRDLRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGRE 190

Query: 703  EAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXX 882
             AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH                   
Sbjct: 191  GAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAA 250

Query: 883  ---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQ 1053
               + ++KPDL++ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A ++ +A+R +++
Sbjct: 251  EVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASRE 310

Query: 1054 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 1233
            E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E + YQDNI +LE ++R+ K 
Sbjct: 311  EIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKS 370

Query: 1234 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 1377
            EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 371  EMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418


>ref|NP_776546.1| neurofilament light polypeptide [Bos taurus].
          Length = 555

 Score =  289 bits (739), Expect = 5e-78
 Identities = 160/334 (47%), Positives = 219/334 (65%), Gaps = 3/334 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 528
            E LD S   A++ +  + RT EK +LQ+LNDRFA++IE+V  LEQQN  L AE  V R K
Sbjct: 69   ESLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 128

Query: 529  GREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 708
              EP+                    TN++  +  ER+ L + L+ L+A+ +EE+  +E+A
Sbjct: 129  HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 188

Query: 709  ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMD 888
            E  L   R   D A LAR +LE+RI+SL +EIAFLKKVH                   MD
Sbjct: 189  EGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMD 248

Query: 889  MS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMME 1065
            +S KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN DA+R AK E+ E
Sbjct: 249  VSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSE 308

Query: 1066 YRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMAR 1245
             R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +LE E+R  K EMAR
Sbjct: 309  SRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMAR 368

Query: 1246 HLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
            +L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 369  YLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLS 402


>ref|XP_002689833.1| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score =  263 bits (671), Expect = 4e-70
 Identities = 136/339 (40%), Positives = 219/339 (64%), Gaps = 10/339 (2%)
 Frame = +1

Query: 361  LDFSLADAV-------NQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVN 519
            LDFS + ++         ++  +R+NEK +LQ LNDRFA YIEKV +LEQQN  + AE+ 
Sbjct: 75   LDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQ 134

Query: 520  RLKGREPTXXXXXXXXXXXXXXXXXXXX--TNQRARVDVERDNLLDDLQRLKAKLQEEIQ 693
             L+ ++ +                       +++A+V ++ D+L +D+ RLK + +EE +
Sbjct: 135  ALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEAR 194

Query: 694  LKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXX 873
            L+++ E  + A R D++ ++L +++L+++++SL +E+AFL+  H                
Sbjct: 195  LRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHI 254

Query: 874  XXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAK 1050
                 D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N +A+R AK
Sbjct: 255  TVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAK 314

Query: 1051 QEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLK 1230
            +E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE E+R  K
Sbjct: 315  EEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTK 374

Query: 1231 DEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
             EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 375  WEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|XP_582135.3| PREDICTED: neurofilament, medium polypeptide [Bos taurus].
          Length = 931

 Score =  263 bits (671), Expect = 4e-70
 Identities = 136/339 (40%), Positives = 219/339 (64%), Gaps = 10/339 (2%)
 Frame = +1

Query: 361  LDFSLADAV-------NQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVN 519
            LDFS + ++         ++  +R+NEK +LQ LNDRFA YIEKV +LEQQN  + AE+ 
Sbjct: 75   LDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQ 134

Query: 520  RLKGREPTXXXXXXXXXXXXXXXXXXXX--TNQRARVDVERDNLLDDLQRLKAKLQEEIQ 693
             L+ ++ +                       +++A+V ++ D+L +D+ RLK + +EE +
Sbjct: 135  ALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEAR 194

Query: 694  LKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXX 873
            L+++ E  + A R D++ ++L +++L+++++SL +E+AFL+  H                
Sbjct: 195  LRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHI 254

Query: 874  XXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAK 1050
                 D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N +A+R AK
Sbjct: 255  TVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAK 314

Query: 1051 QEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLK 1230
            +E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE E+R  K
Sbjct: 315  EEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTK 374

Query: 1231 DEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
             EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 375  WEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|XP_001252037.1| PREDICTED: neurofilament triplet M protein [Bos taurus].
          Length = 931

 Score =  263 bits (671), Expect = 4e-70
 Identities = 136/339 (40%), Positives = 219/339 (64%), Gaps = 10/339 (2%)
 Frame = +1

Query: 361  LDFSLADAV-------NQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVN 519
            LDFS + ++         ++  +R+NEK +LQ LNDRFA YIEKV +LEQQN  + AE+ 
Sbjct: 75   LDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQ 134

Query: 520  RLKGREPTXXXXXXXXXXXXXXXXXXXX--TNQRARVDVERDNLLDDLQRLKAKLQEEIQ 693
             L+ ++ +                       +++A+V ++ D+L +D+ RLK + +EE +
Sbjct: 135  ALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEAR 194

Query: 694  LKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXX 873
            L+++ E  + A R D++ ++L +++L+++++SL +E+AFL+  H                
Sbjct: 195  LRDDTEAAIRALRKDIEESSLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHI 254

Query: 874  XXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAK 1050
                 D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N +A+R AK
Sbjct: 255  TVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAK 314

Query: 1051 QEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLK 1230
            +E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE E+R  K
Sbjct: 315  EEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTK 374

Query: 1231 DEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
             EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 375  WEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|XP_002694652.1| PREDICTED: neurofilament, heavy polypeptide 200kDa-like isoform 2
            [Bos taurus].
          Length = 1023

 Score =  221 bits (562), Expect = 2e-57
 Identities = 131/347 (37%), Positives = 196/347 (56%), Gaps = 9/347 (2%)
 Frame = +1

Query: 331  PSSSYGAGELLDFSLADAVN---QEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAA 501
            PS   GAG        D ++   +  +    +EK +LQ LNDRFA YI+KVR LE  N +
Sbjct: 60   PSRFRGAGTTSSTDSLDTLSNGPEGCVVVARSEKEQLQVLNDRFAGYIDKVRQLEAHNRS 119

Query: 502  LAAEVNRLKGREP--TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAK 675
            L  E   L+ ++                           R ++ +E+++LL+D+  ++ +
Sbjct: 120  LEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQR 179

Query: 676  LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXX 855
            L +E + +EEAE    A       A  AR++L+++ ++L EE  +L++ H          
Sbjct: 180  LDDEARQREEAEAATRALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQ 239

Query: 856  XXXXXXXXXM----DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANK 1023
                          D  K D+T+ALR+IRAQ E    ++  ++EEW++ ++  L++AA  
Sbjct: 240  IQSSSAAQTQAEARDALKCDVTSALREIRAQLEGHTVQSTLQSEEWFRVRLDRLSEAAKV 299

Query: 1024 NNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIAR 1203
            N DA+R A++E+ EYR Q+Q+ T E++ LK T DSL RQ  ELEDR  ++ + YQ+ I +
Sbjct: 300  NTDAMRSAQEEISEYRRQLQARTTELETLKSTKDSLERQRSELEDRHQADIASYQEAIQQ 359

Query: 1204 LEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRI 1344
            L+ E+R+ K EMA  LREYQDLLNVKMALD+EIA YRKLLEGEE RI
Sbjct: 360  LDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRI 406


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,335,843
Number of extensions: 948015
Number of successful extensions: 4601
Number of sequences better than 1.0e-05: 115
Number of HSP's gapped: 4337
Number of HSP's successfully gapped: 121
Length of query: 492
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 386
Effective length of database: 14,174,046
Effective search space: 5471181756
Effective search space used: 5471181756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001455
         (1478 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001012394.1| desmin [Canis lupus familiaris].                  625   e-180
Alignment   gi|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Cani...   436   e-122
Alignment   gi|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis...   436   e-122
Alignment   gi|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Cani...   432   e-121
Alignment   gi|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis...   432   e-121
Alignment   gi|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Cani...   426   e-119
Alignment   gi|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis...   417   e-116
Alignment   gi|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis...   412   e-115
Alignment   gi|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Can...   403   e-113
Alignment   gi|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis...   404   e-113

>ref|NP_001012394.1| desmin [Canis lupus familiaris].
          Length = 469

 Score =  625 bits (1613), Expect(2) = e-180
 Identities = 343/415 (82%), Positives = 347/415 (83%), Gaps = 1/415 (0%)
 Frame = +1

Query: 202  RAGFGTKGSSSSVTSRVYQVSRTXXXXXXXXXXXXXXXXXTRVPSSSYGAGELLDFSLAD 381
            RAGFGTKGSSSSVTSRVYQVSRT                  R PS  Y AGELLDFSLAD
Sbjct: 37   RAGFGTKGSSSSVTSRVYQVSRTSGGAGGLGALRAGRLGTGRAPS--YSAGELLDFSLAD 94

Query: 382  AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTXXXXXX 561
            AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT      
Sbjct: 95   AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTRVAEIY 154

Query: 562  XXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 741
                          TNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV
Sbjct: 155  EEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 214

Query: 742  DAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKPDLTAALR 921
            DAATLARIDLERRIESLNEEIAFLKKVH                   MDMSKPDLTAALR
Sbjct: 215  DAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALR 274

Query: 922  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 1101
            DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI
Sbjct: 275  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 334

Query: 1102 DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 1281
            DALKGTNDSLMRQMRE+EDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK
Sbjct: 335  DALKGTNDSLMRQMREMEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 394

Query: 1282 MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ-GF*GPYXETVMIQT 1443
            MALDVEIATYRKLLEGEESRINLPIQT+SALNFRETSPEQ G      +TVMI+T
Sbjct: 395  MALDVEIATYRKLLEGEESRINLPIQTYSALNFRETSPEQRGSEVHTKKTVMIKT 449



 Score = 26.6 bits (57), Expect(2) = e-180
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVVSEA
Sbjct: 450  IETRDGEVVSEA 461


>ref|XP_856478.1| PREDICTED: similar to vimentin isoform 12 [Canis familiaris].
          Length = 466

 Score =  436 bits (1122), Expect = e-122
 Identities = 222/344 (64%), Positives = 268/344 (77%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 427


>ref|XP_535175.2| PREDICTED: similar to vimentin isoform 1 [Canis familiaris].
          Length = 466

 Score =  436 bits (1122), Expect = e-122
 Identities = 222/344 (64%), Positives = 268/344 (77%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 427


>ref|XP_856433.1| PREDICTED: similar to vimentin isoform 11 [Canis familiaris].
          Length = 460

 Score =  432 bits (1111), Expect = e-121
 Identities = 222/344 (64%), Positives = 268/344 (77%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEAQIQDQHVQID------MDVSKP 257

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 258  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 317

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 318  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 377

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 378  QDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 421


>ref|XP_856267.1| PREDICTED: similar to vimentin isoform 7 [Canis familiaris].
          Length = 433

 Score =  432 bits (1111), Expect = e-121
 Identities = 220/341 (64%), Positives = 265/341 (77%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            QDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN R
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLR 424


>ref|XP_856390.1| PREDICTED: similar to vimentin isoform 10 [Canis familiaris].
          Length = 465

 Score =  426 bits (1094), Expect = e-119
 Identities = 219/344 (63%), Positives = 266/344 (77%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ R+ A  +E +Q +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRVGAAGEEMLQ-REEAESTL 202

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 203  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP 262

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 263  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 322

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 323  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 382

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 383  QDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 426


>ref|XP_856226.1| PREDICTED: similar to Vimentin isoform 6 [Canis familiaris].
          Length = 419

 Score =  417 bits (1071), Expect = e-116
 Identities = 212/327 (64%), Positives = 255/327 (77%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESR 1341
            QDLLNVKMALD+EIATYRKLLEGEESR
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESR 410


>ref|XP_856098.1| PREDICTED: similar to Vimentin isoform 3 [Canis familiaris].
          Length = 411

 Score =  412 bits (1059), Expect = e-115
 Identities = 212/328 (64%), Positives = 255/328 (77%), Gaps = 1/328 (0%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRA-DVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSK 897
             +FR  DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SK
Sbjct: 204  QSFRQQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSK 263

Query: 898  PDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQ 1077
            PDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q
Sbjct: 264  PDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQ 323

Query: 1078 IQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLRE 1257
            +QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLRE
Sbjct: 324  VQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLRE 383

Query: 1258 YQDLLNVKMALDVEIATYRKLLEGEESR 1341
            YQDLLNVKMALD+EIATYRKLLEGEESR
Sbjct: 384  YQDLLNVKMALDIEIATYRKLLEGEESR 411


>ref|XP_534812.2| PREDICTED: similar to peripherin isoform 1 [Canis familiaris].
          Length = 469

 Score =  403 bits (1036), Expect(2) = e-113
 Identities = 214/365 (58%), Positives = 268/365 (73%), Gaps = 7/365 (1%)
 Frame = +1

Query: 325  RVPSSSYGA-----GELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQ 489
            R P +  GA      E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQ
Sbjct: 60   RGPRAGAGALLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQ 119

Query: 490  QNAALAAEVNRLKGREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLK 669
            QNAAL  E+++ +G+EP                       +R RV VERD L +DL  LK
Sbjct: 120  QNAALRGELSQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALK 179

Query: 670  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 849
             +L+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H        
Sbjct: 180  QRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQ 239

Query: 850  XXXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANK 1023
                          +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK  DL+ AAN+
Sbjct: 240  VSVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYGDLSDAANR 299

Query: 1024 NNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIAR 1203
            N++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   AR
Sbjct: 300  NHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAR 359

Query: 1204 LEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            LEEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ +
Sbjct: 360  LEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSMK 419

Query: 1384 ETSPE 1398
             + PE
Sbjct: 420  TSVPE 424



 Score = 24.3 bits (51), Expect(2) = e-113
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVV+E+
Sbjct: 442  IETRDGEVVTES 453


>ref|XP_856348.1| PREDICTED: similar to vimentin isoform 9 [Canis familiaris].
          Length = 458

 Score =  404 bits (1039), Expect = e-113
 Identities = 212/344 (61%), Positives = 257/344 (74%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q 
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQP 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
             S+          N+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  FSFL--------QNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 375

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI LP+  FS+LN RET+
Sbjct: 376  QDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETN 419


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,704,071
Number of extensions: 887272
Number of successful extensions: 5192
Number of sequences better than 1.0e-05: 121
Number of HSP's gapped: 4792
Number of HSP's successfully gapped: 138
Length of query: 492
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 385
Effective length of database: 15,307,552
Effective search space: 5893407520
Effective search space used: 5893407520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001455
         (1478 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001918.3| desmin [Homo sapiens].                               632   0.0  
Alignment   gi|NP_003371.2| vimentin [Homo sapiens].                             438   e-123
Alignment   gi|NP_006253.2| peripherin [Homo sapiens].                           407   e-113
Alignment   gi|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo...   388   e-108
Alignment   gi|NP_001229305.1| glial fibrillary acidic protein isoform 3 [H...   383   e-106
Alignment   gi|NP_001124491.1| glial fibrillary acidic protein isoform 2 [H...   383   e-106
Alignment   gi|NP_116116.1| alpha-internexin [Homo sapiens].                     305   7e-83
Alignment   gi|NP_006149.2| neurofilament light polypeptide [Homo sapiens].      291   1e-78
Alignment   gi|NP_005373.2| neurofilament medium polypeptide isoform 1 [Hom...   264   2e-70
Alignment   gi|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].      226   5e-59

>ref|NP_001918.3| desmin [Homo sapiens].
          Length = 470

 Score =  632 bits (1629), Expect(2) = 0.0
 Identities = 346/415 (83%), Positives = 350/415 (84%), Gaps = 1/415 (0%)
 Frame = +1

Query: 202  RAGFGTKGSSSSVTSRVYQVSRTXXXXXXXXXXXXXXXXXTRVPSSSYGAGELLDFSLAD 381
            RAGFG+KGSSSSVTSRVYQVSRT                 TR PSS YGAGELLDFSLAD
Sbjct: 37   RAGFGSKGSSSSVTSRVYQVSRTSGGAGGLGSLRASRLGTTRTPSS-YGAGELLDFSLAD 95

Query: 382  AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTXXXXXX 561
            AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT      
Sbjct: 96   AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTRVAELY 155

Query: 562  XXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 741
                          TNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV
Sbjct: 156  EEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 215

Query: 742  DAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKPDLTAALR 921
            DAATLARIDLERRIESLNEEIAFLKKVH                   MDMSKPDLTAALR
Sbjct: 216  DAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALR 275

Query: 922  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 1101
            DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI
Sbjct: 276  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 335

Query: 1102 DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 1281
            DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK
Sbjct: 336  DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 395

Query: 1282 MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ-GF*GPYXETVMIQT 1443
            MALDVEIATYRKLLEGEESRINLPIQT+SALNFRETSPEQ G      +TVMI+T
Sbjct: 396  MALDVEIATYRKLLEGEESRINLPIQTYSALNFRETSPEQRGSEVHTKKTVMIKT 450



 Score = 26.6 bits (57), Expect(2) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVVSEA
Sbjct: 451  IETRDGEVVSEA 462


>ref|NP_003371.2| vimentin [Homo sapiens].
          Length = 466

 Score =  438 bits (1127), Expect = e-123
 Identities = 222/344 (64%), Positives = 269/344 (78%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAEN L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   +D+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQIQEQHVQIDVDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVKMALD+EIATYRKLLEGEESRI+LP+  FS+LN RET+
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETN 427


>ref|NP_006253.2| peripherin [Homo sapiens].
          Length = 470

 Score =  407 bits (1047), Expect = e-113
 Identities = 216/365 (59%), Positives = 269/365 (73%), Gaps = 7/365 (1%)
 Frame = +1

Query: 325  RVPSSSYGA-----GELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQ 489
            R P +  GA      E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQ
Sbjct: 61   RSPRAGAGALLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQ 120

Query: 490  QNAALAAEVNRLKGREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLK 669
            QNAAL  E+++ +G+EP                       +R RV VERD L +DL  LK
Sbjct: 121  QNAALRGELSQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALK 180

Query: 670  AKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXX 849
             +L+EE + +E+AE+NL  FR DVD ATL+R++LER+IESL +EI FLKK+H        
Sbjct: 181  QRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQ 240

Query: 850  XXXXXXXXXXXMDMS--KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANK 1023
                          +  KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+
Sbjct: 241  VSVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANR 300

Query: 1024 NNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIAR 1203
            N++ALRQAKQEM E R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   AR
Sbjct: 301  NHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAR 360

Query: 1204 LEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            LEEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++LN +
Sbjct: 361  LEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLNIK 420

Query: 1384 ETSPE 1398
             T PE
Sbjct: 421  TTVPE 425


>ref|NP_002046.1| glial fibrillary acidic protein isoform 1 [Homo sapiens].
          Length = 432

 Score =  388 bits (997), Expect = e-108
 Identities = 199/344 (57%), Positives = 252/344 (73%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 50   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 109

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDNL  DL  ++ KLQ+E  L+ EAENNL
Sbjct: 110  TKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNL 169

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            AA+R + D ATLAR+DLER+IESL EEI FL+K+H                   +D++KP
Sbjct: 170  AAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKP 229

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N + LRQAK E  +YR Q+
Sbjct: 230  DLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQL 289

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TC++++L+GTN+SL RQMRE E+R   EA+ YQ+ +ARLEEE + LKDEMARHL+EY
Sbjct: 290  QSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEY 349

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 350  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 393


>ref|NP_001229305.1| glial fibrillary acidic protein isoform 3 [Homo sapiens].
          Length = 438

 Score =  383 bits (983), Expect = e-106
 Identities = 196/341 (57%), Positives = 249/341 (73%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 50   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 109

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDNL  DL  ++ KLQ+E  L+ EAENNL
Sbjct: 110  TKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNL 169

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            AA+R + D ATLAR+DLER+IESL EEI FL+K+H                   +D++KP
Sbjct: 170  AAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKP 229

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N + LRQAK E  +YR Q+
Sbjct: 230  DLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQL 289

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TC++++L+GTN+SL RQMRE E+R   EA+ YQ+ +ARLEEE + LKDEMARHL+EY
Sbjct: 290  QSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEY 349

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            QDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  R
Sbjct: 350  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIR 390


>ref|NP_001124491.1| glial fibrillary acidic protein isoform 2 [Homo sapiens].
          Length = 431

 Score =  383 bits (983), Expect = e-106
 Identities = 196/341 (57%), Positives = 249/341 (73%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 50   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 109

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDNL  DL  ++ KLQ+E  L+ EAENNL
Sbjct: 110  TKLADVYQAELRELRLRLDQLTANSARLEVERDNLAQDLATVRQKLQDETNLRLEAENNL 169

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            AA+R + D ATLAR+DLER+IESL EEI FL+K+H                   +D++KP
Sbjct: 170  AAYRQEADEATLARLDLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKP 229

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAAL++IR QYE +A+ N+ EAEEWY+SK +DLT AA +N + LRQAK E  +YR Q+
Sbjct: 230  DLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQL 289

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TC++++L+GTN+SL RQMRE E+R   EA+ YQ+ +ARLEEE + LKDEMARHL+EY
Sbjct: 290  QSLTCDLESLRGTNESLERQMREQEERHVREAASYQEALARLEEEGQSLKDEMARHLQEY 349

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            QDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  R
Sbjct: 350  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIR 390


>ref|NP_116116.1| alpha-internexin [Homo sapiens].
          Length = 499

 Score =  305 bits (781), Expect = 7e-83
 Identities = 167/348 (47%), Positives = 235/348 (67%), Gaps = 5/348 (1%)
 Frame = +1

Query: 349  AGELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLK 528
            A + LD S A A   E+   RTNEK +LQ LNDRFA +IEKV  LE QN AL AE+  L+
Sbjct: 71   ASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALR 130

Query: 529  GR--EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKE 702
             R  EP+                    ++ R++  +ERD L +++QRL+A+ +EE + +E
Sbjct: 131  QRHAEPSRVGELFQRELRDLRAQLEEASSARSQALLERDGLAEEVQRLRARCEEESRGRE 190

Query: 703  EAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXX 882
             AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH                   
Sbjct: 191  GAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAA 250

Query: 883  ---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQ 1053
               + ++KPDLT+ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A ++ +A+R +++
Sbjct: 251  EVDVTVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASRE 310

Query: 1054 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 1233
            E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E +GYQD+I +LE ++R+ K 
Sbjct: 311  EIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLENDLRNTKS 370

Query: 1234 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 1377
            EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 371  EMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418


>ref|NP_006149.2| neurofilament light polypeptide [Homo sapiens].
          Length = 543

 Score =  291 bits (744), Expect = 1e-78
 Identities = 158/333 (47%), Positives = 219/333 (65%), Gaps = 2/333 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 528
            E LD S   A++ +  + RT EK +LQ+LNDRFA++IE+V  LEQQN  L AE  V R K
Sbjct: 69   ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 128

Query: 529  GREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 708
              EP+                    TN++  +  ER+ L + L+ L+A+ +EE+  +E+A
Sbjct: 129  HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 188

Query: 709  ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMD 888
            E  L   R   D A LAR +LE+RI+SL +EI+FLKKVH                   MD
Sbjct: 189  EGRLMEARKGADEAALARAELEKRIDSLMDEISFLKKVHEEEIAELQAQIQYAQISVEMD 248

Query: 889  MSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEY 1068
            ++KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN DA+R AK E+ E 
Sbjct: 249  VTKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSES 308

Query: 1069 RHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARH 1248
            R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +LE E+R  K EMAR+
Sbjct: 309  RRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMARY 368

Query: 1249 LREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
            L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 369  LKEYQDLLNVKMALDIEIAAYRKLLEGEETRLS 401


>ref|NP_005373.2| neurofilament medium polypeptide isoform 1 [Homo sapiens].
          Length = 916

 Score =  264 bits (674), Expect = 2e-70
 Identities = 137/339 (40%), Positives = 219/339 (64%), Gaps = 10/339 (2%)
 Frame = +1

Query: 361  LDFSLADAV-------NQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVN 519
            LDFS + ++         ++  +R+NEK +LQ LNDRFA YIEKV +LEQQN  + AE+ 
Sbjct: 75   LDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQ 134

Query: 520  RLKGREPTXXXXXXXXXXXXXXXXXXXX--TNQRARVDVERDNLLDDLQRLKAKLQEEIQ 693
             L+ ++ +                       +++A+V ++ D+L +D+ RLK + +EE +
Sbjct: 135  ALRQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEAR 194

Query: 694  LKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXX 873
            L+++ E  + A R D++ A+L +++L+++++SL +E+AFL+  H                
Sbjct: 195  LRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHI 254

Query: 874  XXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAK 1050
                 D  K D++ AL++IR+Q E+ + +N+ +AEEW+K + + LT+AA +N +A+R AK
Sbjct: 255  TVERKDYLKTDISTALKEIRSQLESHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAK 314

Query: 1051 QEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLK 1230
            +E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE E+R  K
Sbjct: 315  EEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTK 374

Query: 1231 DEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
             EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 375  WEMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 413


>ref|NP_066554.2| neurofilament heavy polypeptide [Homo sapiens].
          Length = 1020

 Score =  226 bits (575), Expect = 5e-59
 Identities = 131/331 (39%), Positives = 193/331 (58%), Gaps = 8/331 (2%)
 Frame = +1

Query: 400  LTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP--TXXXXXXXXXX 573
            + T  +EK +LQ LNDRFA YI+KVR LE  N +L  E   L+ ++   +          
Sbjct: 91   VATSRSEKEQLQALNDRFAGYIDKVRQLEAHNRSLEGEAAALRQQQAGRSAMGELYEREV 150

Query: 574  XXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAAT 753
                         R ++ +E+++LL+D+  ++ +L +E + +EEAE    A       A 
Sbjct: 151  REMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQRLDDEARQREEAEAAARALARFAQEAE 210

Query: 754  LARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXM------DMSKPDLTAA 915
             AR+DL+++ ++L EE  +L++ H                          D  K D+T+A
Sbjct: 211  AARVDLQKKAQALQEECGYLRRHHQEEVGELLGQIQGSGAAQAQMQAETRDALKCDVTSA 270

Query: 916  LRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTC 1095
            LR+IRAQ E  A ++  ++EEW++ ++  L++AA  N DA+R A++E+ EYR Q+Q+ T 
Sbjct: 271  LREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAAKVNTDAMRSAQEEITEYRRQLQARTT 330

Query: 1096 EIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLN 1275
            E++ALK T DSL RQ  ELEDR  ++ + YQ+ I +L+ E+R+ K EMA  LREYQDLLN
Sbjct: 331  ELEALKSTKDSLERQRSELEDRHQADIASYQEAIQQLDAELRNTKWEMAAQLREYQDLLN 390

Query: 1276 VKMALDVEIATYRKLLEGEESRINLPIQTFS 1368
            VKMALD+EIA YRKLLEGEE RI      FS
Sbjct: 391  VKMALDIEIAAYRKLLEGEECRIGFGPIPFS 421


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,728,791
Number of extensions: 850046
Number of successful extensions: 4697
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 4434
Number of HSP's successfully gapped: 95
Length of query: 492
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 385
Effective length of database: 14,770,016
Effective search space: 5686456160
Effective search space used: 5686456160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001455
         (1478 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034173.1| desmin [Mus musculus].                               626   e-180
Alignment   gi|NP_035831.2| vimentin [Mus musculus].                             439   e-123
Alignment   gi|NP_001157061.1| peripherin isoform 3 [Mus musculus].              402   e-112
Alignment   gi|NP_001157060.1| peripherin isoform 2 [Mus musculus].              387   e-108
Alignment   gi|NP_038667.2| peripherin isoform 1 [Mus musculus].                 387   e-108
Alignment   gi|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus ...   385   e-107
Alignment   gi|NP_001124492.1| glial fibrillary acidic protein isoform 1 [M...   380   e-105
Alignment   gi|NP_666212.3| alpha-internexin [Mus musculus].                     305   5e-83
Alignment   gi|NP_035040.1| neurofilament light polypeptide [Mus musculus].      289   4e-78
Alignment   gi|NP_032717.2| neurofilament medium polypeptide [Mus musculus].     262   6e-70

>ref|NP_034173.1| desmin [Mus musculus].
          Length = 469

 Score =  626 bits (1615), Expect(2) = e-180
 Identities = 342/415 (82%), Positives = 348/415 (83%), Gaps = 1/415 (0%)
 Frame = +1

Query: 202  RAGFGTKGSSSSVTSRVYQVSRTXXXXXXXXXXXXXXXXXTRVPSSSYGAGELLDFSLAD 381
            RAGFGTKGSSSS+TSRVYQVSRT                 TR PS  YGAGELLDFSLAD
Sbjct: 37   RAGFGTKGSSSSMTSRVYQVSRTSGGAGGLGSLRSSRLGTTRAPS--YGAGELLDFSLAD 94

Query: 382  AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTXXXXXX 561
            AVNQEFL TRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT      
Sbjct: 95   AVNQEFLATRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTRVAELY 154

Query: 562  XXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 741
                          TNQRARVDVERDNL+DDLQRLKAKLQEEIQL+EEAENNLAAFRADV
Sbjct: 155  EEEMRELRRQVEVLTNQRARVDVERDNLIDDLQRLKAKLQEEIQLREEAENNLAAFRADV 214

Query: 742  DAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKPDLTAALR 921
            DAATLARIDLERRIESLNEEIAFLKKVH                   MDMSKPDLTAALR
Sbjct: 215  DAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALR 274

Query: 922  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 1101
            DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI
Sbjct: 275  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 334

Query: 1102 DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 1281
            DALKGTNDSLMRQMRELEDRFASEA+GYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK
Sbjct: 335  DALKGTNDSLMRQMRELEDRFASEANGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 394

Query: 1282 MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ-GF*GPYXETVMIQT 1443
            MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ G      +TVMI+T
Sbjct: 395  MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRGSEVHTKKTVMIKT 449



 Score = 26.6 bits (57), Expect(2) = e-180
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVVSEA
Sbjct: 450  IETRDGEVVSEA 461


>ref|NP_035831.2| vimentin [Mus musculus].
          Length = 466

 Score =  439 bits (1128), Expect = e-123
 Identities = 223/346 (64%), Positives = 271/346 (78%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+  
Sbjct: 84   VDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGK 143

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            +                    TN +ARV+VERDNL +D+ RL+ KLQEE+  +EEAE+ L
Sbjct: 144  SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTL 203

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
             +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   +D+SKP
Sbjct: 204  QSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKP 263

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR Q+
Sbjct: 264  DLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQV 323

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLREY
Sbjct: 324  QSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREY 383

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPE 1398
            QDLLNVKMALD+EIATYRKLLEGEESRI+LP+ TFS+LN RET+ E
Sbjct: 384  QDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSSLNLRETNLE 429


>ref|NP_001157061.1| peripherin isoform 3 [Mus musculus].
          Length = 475

 Score =  402 bits (1033), Expect = e-112
 Identities = 210/350 (60%), Positives = 262/350 (74%), Gaps = 2/350 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGR 534
            E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQQNAAL  E+++ +G+
Sbjct: 80   ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 139

Query: 535  EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAEN 714
            EP                       +R RV VERD L +DL  LK +L+EE + +E+AE+
Sbjct: 140  EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEH 199

Query: 715  NLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMS 894
            NL  FR DVD ATL+R++LER+IESL +EI FLKK+H                      +
Sbjct: 200  NLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEA 259

Query: 895  --KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEY 1068
              KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSK +DL+ AAN+N++ALRQAKQEM E 
Sbjct: 260  TVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNES 319

Query: 1069 RHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARH 1248
            R QIQS  CE+D L+GTN++L+RQ+RELE++FA EA GYQ   ARLEEE+R LK+EMARH
Sbjct: 320  RRQIQSLMCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARH 379

Query: 1249 LREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPE 1398
            LREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + T PE
Sbjct: 380  LREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPE 429


>ref|NP_001157060.1| peripherin isoform 2 [Mus musculus].
          Length = 506

 Score =  387 bits (995), Expect(2) = e-108
 Identities = 211/382 (55%), Positives = 263/382 (68%), Gaps = 34/382 (8%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGR 534
            E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQQNAAL  E+++ +G+
Sbjct: 80   ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 139

Query: 535  EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAEN 714
            EP                       +R RV VERD L +DL  LK +L+EE + +E+AE+
Sbjct: 140  EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEH 199

Query: 715  NLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMS 894
            NL  FR DVD ATL+R++LER+IESL +EI FLKK+H                      +
Sbjct: 200  NLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEA 259

Query: 895  --KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKV------------------------ 996
              KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSKV                        
Sbjct: 260  TVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKVREHWGNPGGPRVGRHWEWRCASQP 319

Query: 997  --------SDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMREL 1152
                    +DL+ AAN+N++ALRQAKQEM E R QIQS  CE+D L+GTN++L+RQ+REL
Sbjct: 320  GLSATAQYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLREL 379

Query: 1153 EDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGE 1332
            E++FA EA GYQ   ARLEEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGE
Sbjct: 380  EEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGE 439

Query: 1333 ESRINLPIQTFSALNFRETSPE 1398
            ESRI++P+ +F++L+ + T PE
Sbjct: 440  ESRISVPVHSFASLSLKTTVPE 461



 Score = 24.3 bits (51), Expect(2) = e-108
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVV+E+
Sbjct: 479  IETRDGEVVTES 490


>ref|NP_038667.2| peripherin isoform 1 [Mus musculus].
          Length = 507

 Score =  387 bits (995), Expect = e-108
 Identities = 211/382 (55%), Positives = 263/382 (68%), Gaps = 34/382 (8%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGR 534
            E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQQNAAL  E+++ +G+
Sbjct: 80   ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 139

Query: 535  EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAEN 714
            EP                       +R RV VERD L +DL  LK +L+EE + +E+AE+
Sbjct: 140  EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEH 199

Query: 715  NLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMS 894
            NL  FR DVD ATL+R++LER+IESL +EI FLKK+H                      +
Sbjct: 200  NLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEA 259

Query: 895  --KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKV------------------------ 996
              KP+LTAALRDIRAQYE IAAKN+ EAEEWYKSKV                        
Sbjct: 260  TVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKVREHWGNPGGPRVGRHWEWRCASQP 319

Query: 997  --------SDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMREL 1152
                    +DL+ AAN+N++ALRQAKQEM E R QIQS  CE+D L+GTN++L+RQ+REL
Sbjct: 320  GLSATAQYADLSDAANRNHEALRQAKQEMNESRRQIQSLMCEVDGLRGTNEALLRQLREL 379

Query: 1153 EDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGE 1332
            E++FA EA GYQ   ARLEEE+R LK+EMARHLREYQ+LLNVKMALD+EIATYRKLLEGE
Sbjct: 380  EEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGE 439

Query: 1333 ESRINLPIQTFSALNFRETSPE 1398
            ESRI++P+ +F++L+ + T PE
Sbjct: 440  ESRISVPVHSFASLSLKTTVPE 461


>ref|NP_034407.2| glial fibrillary acidic protein isoform 2 [Mus musculus].
          Length = 430

 Score =  385 bits (990), Expect = e-107
 Identities = 196/344 (56%), Positives = 251/344 (72%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 47   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 106

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDN   DL  L+ KLQ+E  L+ EAENNL
Sbjct: 107  TKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNL 166

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            AA+R + D ATLAR+DLER++ESL EEI FL+K++                   MD++KP
Sbjct: 167  AAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKP 226

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALR+IR QYE +A  N+ E EEWY+SK +DLT AA++N + LRQAK E  +YR Q+
Sbjct: 227  DLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQL 286

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            Q+ TC++++L+GTN+SL RQMRE E+R A E++ YQ+ +ARLEEE + LK+EMARHL+EY
Sbjct: 287  QALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEY 346

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            QDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 347  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 390


>ref|NP_001124492.1| glial fibrillary acidic protein isoform 1 [Mus musculus].
          Length = 428

 Score =  380 bits (976), Expect = e-105
 Identities = 193/341 (56%), Positives = 248/341 (72%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 47   VDFSLAGALNAGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 106

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDN   DL  L+ KLQ+E  L+ EAENNL
Sbjct: 107  TKLADVYQAELRELRLRLDQLTANSARLEVERDNFAQDLGTLRQKLQDETNLRLEAENNL 166

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            AA+R + D ATLAR+DLER++ESL EEI FL+K++                   MD++KP
Sbjct: 167  AAYRQEADEATLARVDLERKVESLEEEIQFLRKIYEEEVRELREQLAQQQVHVEMDVAKP 226

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALR+IR QYE +A  N+ E EEWY+SK +DLT AA++N + LRQAK E  +YR Q+
Sbjct: 227  DLTAALREIRTQYEAVATSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQL 286

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            Q+ TC++++L+GTN+SL RQMRE E+R A E++ YQ+ +ARLEEE + LK+EMARHL+EY
Sbjct: 287  QALTCDLESLRGTNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEY 346

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFR 1383
            QDLLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  R
Sbjct: 347  QDLLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIR 387


>ref|NP_666212.3| alpha-internexin [Mus musculus].
          Length = 501

 Score =  305 bits (782), Expect = 5e-83
 Identities = 168/348 (48%), Positives = 235/348 (67%), Gaps = 5/348 (1%)
 Frame = +1

Query: 349  AGELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLK 528
            A + LD S A A   E+   RTNEK +LQ LNDRFA +IEKV  LE QN AL AE+  L+
Sbjct: 71   ASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALR 130

Query: 529  GR--EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKE 702
             R  EP+                    ++ RA+  +ERD L +++QRL+A+ +EE + +E
Sbjct: 131  QRHAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGRE 190

Query: 703  EAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXX 882
             AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH                   
Sbjct: 191  GAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAA 250

Query: 883  ---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQ 1053
               + ++KPDLT+ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A ++ +A+R +++
Sbjct: 251  EVDVAVAKPDLTSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASRE 310

Query: 1054 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 1233
            E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E +GYQD+I +LE ++R+ K 
Sbjct: 311  EIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVAGYQDSIGQLESDLRNTKS 370

Query: 1234 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 1377
            EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 371  EMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTGGLSISGLN 418


>ref|NP_035040.1| neurofilament light polypeptide [Mus musculus].
          Length = 543

 Score =  289 bits (739), Expect = 4e-78
 Identities = 160/334 (47%), Positives = 219/334 (65%), Gaps = 3/334 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 528
            E LD S   A++ +  + RT EK +LQ+LNDRFA++IE+V  LEQQN  L AE  V R K
Sbjct: 69   ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 128

Query: 529  GREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 708
              EP+                    TN++  +  ER+ L + L+ L+A+ +EE+  +E+A
Sbjct: 129  HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 188

Query: 709  ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMD 888
            E  L   R   D A LAR +LE+RI+SL +EIAFLKKVH                   MD
Sbjct: 189  EGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMD 248

Query: 889  MS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMME 1065
            +S KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN DA+R AK E+ E
Sbjct: 249  VSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSE 308

Query: 1066 YRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMAR 1245
             R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +LE E+R  K EMAR
Sbjct: 309  SRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRSTKSEMAR 368

Query: 1246 HLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
            +L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 369  YLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLS 402


>ref|NP_032717.2| neurofilament medium polypeptide [Mus musculus].
          Length = 848

 Score =  262 bits (669), Expect = 6e-70
 Identities = 135/337 (40%), Positives = 218/337 (64%), Gaps = 8/337 (2%)
 Frame = +1

Query: 361  LDFSLADAV-----NQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRL 525
            LDFS + ++       ++  +R+NEK +LQ LNDRFA YIEKV +LEQQN  + AE+  L
Sbjct: 75   LDFSQSSSLLNGGSGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQAL 134

Query: 526  KGREPTXXXXXXXXXXXXXXXXXXXX--TNQRARVDVERDNLLDDLQRLKAKLQEEIQLK 699
            + ++ +                       +++A+V ++ D+L +D+ RLK + +EE +L+
Sbjct: 135  RQKQASHAQLGDAYDQEIRELRATLEMVNHEKAQVQLDSDHLEEDIHRLKERFEEEARLR 194

Query: 700  EEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXX 879
            ++ E  + A R D++ +++ +++L+++++SL +E+AFL+  H                  
Sbjct: 195  DDTEAAIRALRKDIEESSMVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHITV 254

Query: 880  XM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQE 1056
               D  K D++ AL++IR+Q E  + +N+ +AEEW+K + + LT+AA +N +A+R AK+E
Sbjct: 255  ERKDYLKTDISTALKEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAKEE 314

Query: 1057 MMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDE 1236
            + EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE E+R  K E
Sbjct: 315  IAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTKWE 374

Query: 1237 MARHLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
            MARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +
Sbjct: 375  MARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFS 411


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,746,016
Number of extensions: 706468
Number of successful extensions: 3842
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 3588
Number of HSP's successfully gapped: 98
Length of query: 492
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 387
Effective length of database: 12,463,779
Effective search space: 4823482473
Effective search space used: 4823482473
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001455
         (1478 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001001535.1| desmin [Sus scrofa].                              642   0.0  
Alignment   gi|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].            438   e-123
Alignment   gi|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].          404   e-113
Alignment   gi|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].               404   e-113
Alignment   gi|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [...   388   e-108
Alignment   gi|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus sc...   304   9e-83
Alignment   gi|XP_003132861.1| PREDICTED: neurofilament light polypeptide-l...   288   4e-78
Alignment   gi|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-...   248   8e-66
Alignment   gi|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [...   225   6e-59
Alignment   gi|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa].     200   2e-51

>ref|NP_001001535.1| desmin [Sus scrofa].
          Length = 471

 Score =  642 bits (1656), Expect(2) = 0.0
 Identities = 350/415 (84%), Positives = 352/415 (84%), Gaps = 1/415 (0%)
 Frame = +1

Query: 202  RAGFGTKGSSSSVTSRVYQVSRTXXXXXXXXXXXXXXXXXTRVPSSSYGAGELLDFSLAD 381
            RAGFGTKGSSSSVTSRVYQVSRT                 TRVPSSSYGAGELLDFSLAD
Sbjct: 37   RAGFGTKGSSSSVTSRVYQVSRTSGGAGGLGPLRASRLGATRVPSSSYGAGELLDFSLAD 96

Query: 382  AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTXXXXXX 561
            AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPT      
Sbjct: 97   AVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTRVAEIY 156

Query: 562  XXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 741
                          TNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV
Sbjct: 157  EEELRELRRQVEVLTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADV 216

Query: 742  DAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKPDLTAALR 921
            DAATLARIDLERRIESLNEEIAFLKKVH                   MDMSKPDLTAALR
Sbjct: 217  DAATLARIDLERRIESLNEEIAFLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALR 276

Query: 922  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 1101
            DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI
Sbjct: 277  DIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTCEI 336

Query: 1102 DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 1281
            DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK
Sbjct: 337  DALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLNVK 396

Query: 1282 MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ-GF*GPYXETVMIQT 1443
            MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQ G      +TVMI+T
Sbjct: 397  MALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQRGSEVHTKKTVMIKT 451



 Score = 26.6 bits (57), Expect(2) = 0.0
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVVSEA
Sbjct: 452  IETRDGEVVSEA 463


>ref|XP_003130769.2| PREDICTED: vimentin-like [Sus scrofa].
          Length = 466

 Score =  438 bits (1126), Expect = e-123
 Identities = 223/348 (64%), Positives = 270/348 (77%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGR 534
            + +DFSLADA+N EF  TRTNEKVELQELNDRFANYI+KVRFLEQQN  L AE+ +LKG+
Sbjct: 82   DAVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQ 141

Query: 535  EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAEN 714
              +                    TN +ARV+VERDNL +D+ RL+ KLQEE   +EEAE+
Sbjct: 142  GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEETLQREEAES 201

Query: 715  NLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMS 894
             L +FR DVD A+LAR+DLER++ESL EEIAFLKK+H                   MD+S
Sbjct: 202  TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDMDVS 261

Query: 895  KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRH 1074
            KPDLTAALRD+R QYE++AAKN+ EAEEWYKSK +DL++AAN+NNDALRQAKQE  EYR 
Sbjct: 262  KPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRR 321

Query: 1075 QIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLR 1254
            Q+QS TCE+DALKGTN+SL RQMRE+E+ FA EA+ YQD I RL++EI+++K+EMARHLR
Sbjct: 322  QVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLR 381

Query: 1255 EYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPE 1398
            EYQDLLNVKMALD+EIATYRKLLEGEESRI+LP+  FS+LN RET+ E
Sbjct: 382  EYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLE 429


>ref|XP_003126170.2| PREDICTED: peripherin-like [Sus scrofa].
          Length = 469

 Score =  404 bits (1037), Expect(2) = e-113
 Identities = 210/350 (60%), Positives = 264/350 (75%), Gaps = 2/350 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGR 534
            E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQQNAAL  E+++ +G+
Sbjct: 75   ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 134

Query: 535  EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAEN 714
            EP                       +R RV VERD L +DL  LK +L+EE + +E+AE+
Sbjct: 135  EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEH 194

Query: 715  NLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMS 894
            NL  FR DVD ATL+R++LER+IESL +EI FLKK+H                      +
Sbjct: 195  NLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEVEA 254

Query: 895  --KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEY 1068
              KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N++ALRQAKQEM E 
Sbjct: 255  TVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNES 314

Query: 1069 RHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARH 1248
            R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   A+LEEE+R LK+EMARH
Sbjct: 315  RRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKLEEELRQLKEEMARH 374

Query: 1249 LREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPE 1398
            LREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + T PE
Sbjct: 375  LREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKTTVPE 424



 Score = 24.3 bits (51), Expect(2) = e-113
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVV+E+
Sbjct: 442  IETRDGEVVTES 453


>ref|XP_003126153.1| PREDICTED: peripherin [Sus scrofa].
          Length = 469

 Score =  404 bits (1037), Expect(2) = e-113
 Identities = 210/350 (60%), Positives = 264/350 (75%), Gaps = 2/350 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGR 534
            E LDFS+A+A+NQEFL TR+NEK ELQELNDRFAN+IEKVRFLEQQNAAL  E+++ +G+
Sbjct: 75   ERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQ 134

Query: 535  EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAEN 714
            EP                       +R RV VERD L +DL  LK +L+EE + +E+AE+
Sbjct: 135  EPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEH 194

Query: 715  NLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMS 894
            NL  FR DVD ATL+R++LER+IESL +EI FLKK+H                      +
Sbjct: 195  NLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEVEA 254

Query: 895  --KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEY 1068
              KP+LTAALRDIRAQYE+IAAKN+ EAEEWYKSK +DL+ AAN+N++ALRQAKQEM E 
Sbjct: 255  TVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNES 314

Query: 1069 RHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARH 1248
            R QIQS TCE+D L+GTN++L+RQ+RELE++FA EA GYQ   A+LEEE+R LK+EMARH
Sbjct: 315  RRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKLEEELRQLKEEMARH 374

Query: 1249 LREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPE 1398
            LREYQ+LLNVKMALD+EIATYRKLLEGEESRI++P+ +F++L+ + T PE
Sbjct: 375  LREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKTTVPE 424



 Score = 24.3 bits (51), Expect(2) = e-113
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 1443 IETRDGEVVSEA 1478
            IETRDGEVV+E+
Sbjct: 442  IETRDGEVVTES 453


>ref|XP_003131377.1| PREDICTED: glial fibrillary acidic protein [Sus scrofa].
          Length = 428

 Score =  388 bits (996), Expect = e-108
 Identities = 199/344 (57%), Positives = 250/344 (72%)
 Frame = +1

Query: 361  LDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREP 540
            +DFSLA A+N  F  TR +E+ E+ ELNDRFA+YIEKVRFLEQQN ALAAE+N+L+ +EP
Sbjct: 46   VDFSLAGALNTGFKETRASERAEMMELNDRFASYIEKVRFLEQQNKALAAELNQLRAKEP 105

Query: 541  TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNL 720
            T                    T   AR++VERDNL  DL  L+ KLQ+E  L+ EAENNL
Sbjct: 106  TKLADVYQAELRELRLRLDQLTANGARLEVERDNLAQDLGTLRQKLQDETNLRLEAENNL 165

Query: 721  AAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP 900
            A +R + D ATLAR+DLER+IESL EEI FL+K+H                   MD++KP
Sbjct: 166  ATYRQEADEATLARLDLERKIESLEEEIRFLRKIHDEEVRELQEQLAQQQVHVEMDVTKP 225

Query: 901  DLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQI 1080
            DLTAALR+IR QYE +A  N+ EAEEWY+SK +DLT AA +N + LRQAK E  +YR Q+
Sbjct: 226  DLTAALREIRTQYEAVATSNMQEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQL 285

Query: 1081 QSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREY 1260
            Q+ TC++++L+GTN+SL RQMRE E+R A EA+ YQ+ + RLEEE + LKDEMARHL+EY
Sbjct: 286  QALTCDVESLRGTNESLERQMREQEERHAREAASYQEALTRLEEEGQSLKDEMARHLQEY 345

Query: 1261 QDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETS 1392
            Q+LLNVK+ALD+EIATYRKLLEGEE+RI +P+QTFS L  RETS
Sbjct: 346  QELLNVKLALDIEIATYRKLLEGEENRITIPVQTFSNLQIRETS 389


>ref|XP_001929355.2| PREDICTED: alpha-internexin, partial [Sus scrofa].
          Length = 477

 Score =  304 bits (778), Expect = 9e-83
 Identities = 167/348 (47%), Positives = 234/348 (67%), Gaps = 5/348 (1%)
 Frame = +1

Query: 349  AGELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLK 528
            A + LD S A A   E+   RTNEK +LQ LNDRFA +IEKV  LE QN AL AE+  L+
Sbjct: 71   ASDGLDLSQAAARTNEYKIIRTNEKEQLQGLNDRFAVFIEKVHQLETQNRALEAELAALR 130

Query: 529  GR--EPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKE 702
             R  EP+                    ++ RA+  +ERD L +++QRL+A+ +EE + +E
Sbjct: 131  QRHAEPSRVGELFQRELRELRAQLEEASSARAQALLERDGLAEEVQRLRARCEEESRGRE 190

Query: 703  EAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXX 882
             AE  L A + DVD ATLAR+DLE+++ESL +E+AF+++VH                   
Sbjct: 191  GAERALKAQQRDVDGATLARLDLEKKVESLLDELAFVRQVHDEEVAELLATLQASSQAAA 250

Query: 883  ---MDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQ 1053
               + ++KPDL++ALR+IRAQYE++AAKN+  AEEWYKSK ++L + A ++ +A+R +++
Sbjct: 251  EVDVAVAKPDLSSALREIRAQYESLAAKNLQSAEEWYKSKFANLNEQAARSTEAIRASRE 310

Query: 1054 EMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKD 1233
            E+ EYR Q+Q+ T EI+ L+G N+SL RQ+ ELE+R ++E + YQDNI +LE ++R+ K 
Sbjct: 311  EIHEYRRQLQARTIEIEGLRGANESLERQILELEERHSAEVASYQDNIGQLENDLRNTKS 370

Query: 1234 EMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFSALN 1377
            EMARHLREYQDLLNVKMALD+EIA YRKLLEGEE+R +    + S LN
Sbjct: 371  EMARHLREYQDLLNVKMALDIEIAAYRKLLEGEETRFSTSGLSISGLN 418


>ref|XP_003132861.1| PREDICTED: neurofilament light polypeptide-like isoform 2 [Sus
            scrofa].
          Length = 544

 Score =  288 bits (738), Expect = 4e-78
 Identities = 160/334 (47%), Positives = 219/334 (65%), Gaps = 3/334 (0%)
 Frame = +1

Query: 355  ELLDFSLADAVNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAE--VNRLK 528
            E LD S   A++ +  + RT EK +LQ+LNDRFA++IE+V  LEQQN  L AE  V R K
Sbjct: 69   ENLDLSQVAAISNDLKSIRTQEKAQLQDLNDRFASFIERVHELEQQNKVLEAELLVLRQK 128

Query: 529  GREPTXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEA 708
              EP+                    TN++  +  ER+ L + L+ L+A+ +EE+  +E+A
Sbjct: 129  HSEPSRFRALYEQEIRDLRLAAEDATNEKQALQGEREGLEETLRNLQARYEEEVLSREDA 188

Query: 709  ENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMD 888
            E  L   R   D A LAR +LE+RI+SL +EIAFLKKVH                   MD
Sbjct: 189  EGRLMEARKGADEAALARAELEKRIDSLMDEIAFLKKVHEEEIAELQAQIQYAQISVEMD 248

Query: 889  MS-KPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMME 1065
            +S KPDL+AAL+DIRAQYE +AAKN+  AEEW+KS+ + LT++A KN DA+R AK E+ E
Sbjct: 249  VSSKPDLSAALKDIRAQYEKLAAKNMQNAEEWFKSRFTVLTESAAKNTDAVRAAKDEVSE 308

Query: 1066 YRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMAR 1245
             R  +++ T EI+A +G N++L +Q++ELED+  ++ S  QD I +LE E+R  K EMAR
Sbjct: 309  SRRLLKAKTLEIEACRGMNEALEKQLQELEDKQNADISAMQDTINKLENELRTTKSEMAR 368

Query: 1246 HLREYQDLLNVKMALDVEIATYRKLLEGEESRIN 1347
            +L+EYQDLLNVKMALD+EIA YRKLLEGEE+R++
Sbjct: 369  YLKEYQDLLNVKMALDIEIAAYRKLLEGEETRLS 402


>ref|XP_001925857.2| PREDICTED: neurofilament medium polypeptide-like isoform 1 [Sus
            scrofa].
          Length = 412

 Score =  248 bits (632), Expect = 8e-66
 Identities = 129/328 (39%), Positives = 209/328 (63%), Gaps = 10/328 (3%)
 Frame = +1

Query: 361  LDFSLADAV-------NQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVN 519
            LDFS + ++         ++  +R+NEK +LQ LNDRFA YIEKV +LEQQN  + AE+ 
Sbjct: 75   LDFSQSSSLLNGGSGPGGDYKLSRSNEKEQLQGLNDRFAGYIEKVHYLEQQNKEIEAEIQ 134

Query: 520  RLKGREPTXXXXXXXXXXXXXXXXXXXX--TNQRARVDVERDNLLDDLQRLKAKLQEEIQ 693
             L+ ++ +                       +++A+V ++ D+L +D+ RLK + +EE +
Sbjct: 135  ALRQKQASHAQLGDAYDQEIRELRATLELVNHEKAQVQLDSDHLEEDIHRLKERFEEEAR 194

Query: 694  LKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXX 873
            L+++ E  + A R D++ A+L +++L+++++SL +E+AFL+  H                
Sbjct: 195  LRDDTEAAIRALRKDIEEASLVKVELDKKVQSLQDEVAFLRSNHEEEVADLLAQIQASHI 254

Query: 874  XXXM-DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAK 1050
                 D  K D+++AL++IR+Q E  + +N+ +AEEW+K + + LT+AA +N +A+R AK
Sbjct: 255  TVERKDYLKTDISSALKEIRSQLECHSDQNMHQAEEWFKCRYAKLTEAAEQNKEAIRSAK 314

Query: 1051 QEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLK 1230
            +E+ EYR Q+QS + E+++++GT +SL RQ+ ++E+R   + S YQD I +LE E+R  K
Sbjct: 315  EEIAEYRRQLQSKSIELESVRGTKESLERQLSDIEERHNHDLSSYQDTIQQLENELRGTK 374

Query: 1231 DEMARHLREYQDLLNVKMALDVEIATYR 1314
             EMARHLREYQDLLNVKMALD+EIA YR
Sbjct: 375  WEMARHLREYQDLLNVKMALDIEIAAYR 402


>ref|XP_001928806.2| PREDICTED: neurofilament heavy polypeptide [Sus scrofa].
          Length = 1049

 Score =  225 bits (573), Expect = 6e-59
 Identities = 135/357 (37%), Positives = 199/357 (55%), Gaps = 11/357 (3%)
 Frame = +1

Query: 331  PSSSYGAGELLDFSLADAVN---QEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAA 501
            PS   GAG        D ++   +  +     EK +LQ LNDRFA YI+KVR LE  N +
Sbjct: 60   PSRFRGAGAASSTDSLDTLSNGPEGCMVAARTEKEQLQALNDRFAGYIDKVRQLEAHNRS 119

Query: 502  LAAEVNRLKGREP--TXXXXXXXXXXXXXXXXXXXXTNQRARVDVERDNLLDDLQRLKAK 675
            L  E   L+ ++                           R ++ +E+++LL+D+  ++ +
Sbjct: 120  LEGEAAALRQQQAGRAAMGELYEREVREMRGAVLRLGAARGQLRLEQEHLLEDIAHVRQR 179

Query: 676  LQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXX 855
            L +E + +EEAE    A       A  AR++L+++ ++L EE  +L++ H          
Sbjct: 180  LDDEARQREEAEAAARALARFAQEAEAARVELQKKAQALQEECGYLRRHHQEEVGELLGQ 239

Query: 856  XXXXXXXXXM------DMSKPDLTAALRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAA 1017
                            D  K D+T+ALR+IRAQ E  A ++  ++EEW++ ++  L++AA
Sbjct: 240  IQGSSAAQTQAQAEARDALKCDVTSALREIRAQLEGHAVQSTLQSEEWFRVRLDRLSEAA 299

Query: 1018 NKNNDALRQAKQEMMEYRHQIQSYTCEIDALKGTNDSLMRQMRELEDRFASEASGYQDNI 1197
              N DA+R A++E+ EYR Q+Q+ T E++ALK T DSL RQ  ELEDR  ++ + YQ+ I
Sbjct: 300  KVNTDAMRSAQEEITEYRRQLQARTTELEALKSTKDSLERQRSELEDRHQADIASYQEAI 359

Query: 1198 ARLEEEIRHLKDEMARHLREYQDLLNVKMALDVEIATYRKLLEGEESRINLPIQTFS 1368
             +L+ E+R+ K EMA  LREYQDLLNVKMALD+EIA YRKLLEGEE RI      FS
Sbjct: 360  QQLDAELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPSPFS 416


>ref|NP_001153087.1| keratin, type II cytoskeletal 8 [Sus scrofa].
          Length = 489

 Score =  200 bits (508), Expect = 2e-51
 Identities = 122/343 (35%), Positives = 184/343 (53%), Gaps = 3/343 (0%)
 Frame = +1

Query: 385  VNQEFLTTRTNEKVELQELNDRFANYIEKVRFLEQQNAALAAEVNRLKGREPTXXXXXXX 564
            V+      RT EK +++ LN++FA++I+KVR LEQQN  L  + N L+ ++         
Sbjct: 88   VDPNIQAVRTQEKEQIKTLNNKFASFIDKVRHLEQQNKVLETKWNLLQQQKTARSNIDNM 147

Query: 565  XXXXXXXXXXXXXT--NQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRAD 738
                         T   ++ +++VE  N+   ++  K K +EEIQ + + EN     + D
Sbjct: 148  FESYINNLRRQLETLAQEKLKLEVELGNMQGLVEDFKNKYEEEIQKRTDMENEFVIIKKD 207

Query: 739  VDAATLARIDLERRIESLNEEIAFLKKVHXXXXXXXXXXXXXXXXXXXMDMSKP-DLTAA 915
            VD A + +++LE R+E L +EI F ++++                   MD S+  DL   
Sbjct: 208  VDEAYMNKVELESRLEGLTDEINFYRQLYEEEIREMQSQISDTSVVLSMDNSRSLDLDGI 267

Query: 916  LRDIRAQYETIAAKNISEAEEWYKSKVSDLTQAANKNNDALRQAKQEMMEYRHQIQSYTC 1095
            + +++AQYE IA ++ +EAE  Y+ K  +L   A K+ D LR+ K E+ E    I     
Sbjct: 268  IAEVKAQYEEIANRSRAEAETMYQIKYEELQSLAGKHGDDLRRTKTEISEMNRNISRLQA 327

Query: 1096 EIDALKGTNDSLMRQMRELEDRFASEASGYQDNIARLEEEIRHLKDEMARHLREYQDLLN 1275
            EI+ LKG   SL   + + E R        Q  +A LE  +R  K +MAR LREYQ+L+N
Sbjct: 328  EIEGLKGQRASLEAAIADAEQRGELAVKDAQAKLAELEAALRTAKQDMARQLREYQELMN 387

Query: 1276 VKMALDVEIATYRKLLEGEESRINLPIQTFSALNFRETSPEQG 1404
            VK+ALDVEIATYRKLLEGEESR+   +Q  S ++ + TS   G
Sbjct: 388  VKLALDVEIATYRKLLEGEESRLESGMQNMS-IHTKTTSGYSG 429


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,996,166
Number of extensions: 747440
Number of successful extensions: 3029
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 2867
Number of HSP's successfully gapped: 77
Length of query: 492
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,779,541
Effective search space: 3415241449
Effective search space used: 3415241449
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-001455
         (1478 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         686   0.0  
Sscrofa_Chr05                                                         161   1e-36
Sscrofa_Chr10                                                         155   8e-35
Sscrofa_Chr12                                                         131   1e-27
Sscrofa_Chr14                                                          64   2e-07

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  686 bits (346), Expect = 0.0
 Identities = 352/354 (99%)
 Strand = Plus / Plus

                                                                             
Query: 322       acccgcgtgccctcctcatcctacggcgcaggcgagctgctggacttctcgctggcagac 381
                 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134560780 acccgcgtgccctcctcatcctacggcgcgggcgagctgctggacttctcgctggcagac 134560839

                                                                             
Query: 382       gccgtcaaccaggagttcctgaccacgcgcaccaacgagaaagtggagctgcaggagctc 441
                 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 134560840 gccgtcaaccaggagttcctgaccacgcgcaccaacgagaaagtggagttgcaggagctc 134560899

                                                                             
Query: 442       aatgatcgctttgccaactacatcgagaaggtgcgcttcctggagcagcagaacgcggcg 501
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134560900 aatgatcgctttgccaactacatcgagaaggtgcgcttcctggagcagcagaacgcggcg 134560959

                                                                             
Query: 502       ctcgccgccgaggtgaaccggctcaagggccgcgagccgacccgggtggccgagatctac 561
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134560960 ctcgccgccgaggtgaaccggctcaagggccgcgagccgacccgggtggccgagatctac 134561019

                                                                             
Query: 562       gaggaggagctgcgcgagctgcggcgccaggtggaggtgctcaccaaccagcgcgcccgc 621
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134561020 gaggaggagctgcgcgagctgcggcgccaggtggaggtgctcaccaaccagcgcgcccgc 134561079

                                                                       
Query: 622       gtcgacgtcgagcgggacaacctgctggacgacctgcagcggctcaaggccaag 675
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134561080 gtcgacgtcgagcgggacaacctgctggacgacctgcagcggctcaaggccaag 134561133



 Score =  440 bits (222), Expect = e-120
 Identities = 222/222 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1120      aacgattccctgatgaggcagatgcgggagctggaggaccgctttgctagtgaggccagc 1179
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563259 aacgattccctgatgaggcagatgcgggagctggaggaccgctttgctagtgaggccagc 134563318

                                                                             
Query: 1180      ggctaccaggacaacatcgcacgcctggaggaggagatccgacacctcaaggatgagatg 1239
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563319 ggctaccaggacaacatcgcacgcctggaggaggagatccgacacctcaaggatgagatg 134563378

                                                                             
Query: 1240      gcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggag 1299
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563379 gcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggag 134563438

                                                           
Query: 1300      attgccacctaccggaagctgctggagggcgaggagagccgg 1341
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134563439 attgccacctaccggaagctgctggagggcgaggagagccgg 134563480



 Score =  353 bits (178), Expect = 2e-94
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                             
Query: 94        atgagccaggcctactcgtccagccagcgcgtgtcctcttaccgccgcaccttcggcggg 153
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134560552 atgagccaggcctactcgtccagccagcgcgtgtcctcttaccgccgcaccttcggcggg 134560611

                                                                             
Query: 154       gccccgagcttcccgctcggctcgccgctgagctcgcccgtgttcccgcgcgcgggcttc 213
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134560612 gccccgagcttcccgctcggctcgccgctgagctcgcccgtgttcccgcgcgcgggcttc 134560671

                                                                           
Query: 214       ggcaccaagggctcctcgagctcggtgacctcccgagtgtaccaggtgtcgcgcacgt 271
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134560672 ggcaccaagggctcctcgagctcggtgacctcccgagtgtaccaggtgtcgcgcacgt 134560729



 Score =  323 bits (163), Expect = 2e-85
 Identities = 166/167 (99%)
 Strand = Plus / Plus

                                                                             
Query: 830       aggagatccgagaactgcaggcccagcttcaggaacaacaggtccaggtggagatggaca 889
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562412 aggagatccgagaactgcaggcccagcttcaggaacaacaggtccaggtggagatggaca 134562471

                                                                             
Query: 890       tgtccaagccagacctcaccgccgccctcagggacatccgggctcagtacgagaccatcg 949
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562472 tgtccaagccagacctcaccgccgccctcagggacatccgggctcagtacgagaccatcg 134562531

                                                                
Query: 950       cggctaagaacatctcggaagccgaagagtggtacaagtcaaaggtg 996
                 |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134562532 cggctaagaacatctcagaagccgaagagtggtacaagtcaaaggtg 134562578



 Score =  254 bits (128), Expect = 1e-64
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                             
Query: 992       aggtgtccgacctgacccaggcagccaataagaacaatgatgcactgcgccaggccaagc 1051
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562740 aggtgtccgacctgacccaggcagccaataagaacaatgatgcactgcgccaggccaagc 134562799

                                                                             
Query: 1052      aggagatgatggagtatcgccatcagatccagtcctacacctgcgagatcgatgccctca 1111
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562800 aggagatgatggagtatcgccatcagatccagtcctacacctgcgagatcgatgccctca 134562859

                         
Query: 1112      agggcact 1119
                 ||||||||
Sbjct: 134562860 agggcact 134562867



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                             
Query: 735       ggatgtggatgcagccactctagctcgaattgacctggagcgcaggatcgaatctctcaa 794
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562201 ggatgtggatgcagccactctagctcgaattgacctggagcgcaggatcgaatctctcaa 134562260

                                                       
Query: 795       cgaggaaatcgcgttccttaagaaagtacacgaagagg 832
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 134562261 cgaggaaatcgcgttccttaagaaagtacacgaagagg 134562298



 Score =  127 bits (64), Expect = 2e-26
 Identities = 67/68 (98%)
 Strand = Plus / Plus

                                                                             
Query: 669       ggccaagctgcaagaggaaattcagctgaaagaagaagccgagaacaatttggctgcctt 728
                 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134562013 ggccaggctgcaagaggaaattcagctgaaagaagaagccgagaacaatttggctgcctt 134562072

                         
Query: 729       ccgagcgg 736
                 ||||||||
Sbjct: 134562073 ccgagcgg 134562080



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                              
Query: 1340      ggatcaacctccctatccagaccttctctgccctcaacttccgag 1384
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134564651 ggatcaacctccctatccagaccttctctgccctcaacttccgag 134564695



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 79/87 (90%), Gaps = 4/87 (4%)
 Strand = Plus / Plus

                                                                             
Query: 1383      agaaacaagccctgagcaa--gggttctgaggtccgtaccnaga-gacagtgatgattca 1439
                 |||||||||||||||||||  |||||||||||||| |||| ||| ||||||||||||  |
Sbjct: 134566202 agaaacaagccctgagcaaaggggttctgaggtccataccaagaagacagtgatgatcaa 134566261

                                            
Query: 1440      gac-atcgagacccgggatggggaggt 1465
                 ||| |||||||||||||||||||||||
Sbjct: 134566262 gaccatcgagacccgggatggggaggt 134566288



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                               
Query: 2         gtctcccctcgccgcatctactctccagcc 31
                 ||||||||||||||||||||||||||||||
Sbjct: 134560460 gtctcccctcgccgcatctactctccagcc 134560489


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  161 bits (81), Expect = 1e-36
 Identities = 123/137 (89%)
 Strand = Plus / Plus

                                                                            
Query: 364      gacttctcgctggcagacgccgtcaaccaggagttcctgaccacgcgcaccaacgagaaa 423
                ||||||||  |||| || ||| ||||||||||||||||| ||||||||| ||||||||| 
Sbjct: 15692007 gacttctccatggccgaggccctcaaccaggagttcctggccacgcgcagcaacgagaag 15692066

                                                                            
Query: 424      gtggagctgcaggagctcaatgatcgctttgccaactacatcgagaaggtgcgcttcctg 483
                  |||||||||||||||||| || ||||| ||||||| ||||||||||||||||||||||
Sbjct: 15692067 caggagctgcaggagctcaacgaccgcttcgccaacttcatcgagaaggtgcgcttcctg 15692126

                                 
Query: 484      gagcagcagaacgcggc 500
                |||||||||||||||||
Sbjct: 15692127 gagcagcagaacgcggc 15692143



 Score =  139 bits (70), Expect = 5e-30
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1204     ctggaggaggagatccgacacctcaaggatgagatggcccgccacctgcgcgagtaccag 1263
                |||||||||||| | || || || ||||| ||||||||  | |||||||| |||||||||
Sbjct: 15693967 ctggaggaggagctgcggcagctaaaggaagagatggcgagacacctgcgagagtaccag 15694026

                                                                            
Query: 1264     gacctgctcaatgtcaagatggccctggatgtggagattgccacctaccggaagctgctg 1323
                || || ||||| |||||||||||||||||  | ||||| |||||||||||||||||||||
Sbjct: 15694027 gagctcctcaacgtcaagatggccctggacatcgagatcgccacctaccggaagctgctg 15694086

                                  
Query: 1324     gagggcgaggagagccgg 1341
                ||||||||||||||||||
Sbjct: 15694087 gagggcgaggagagccgg 15694104



 Score =  107 bits (54), Expect = 2e-20
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||| ||||||||||| ||| | ||||||||| |||||||||| |||||||| ||||||
Sbjct: 18664283 ctgcgtgagtaccaggaactgatgaatgtcaagctggccctggacgtggagatcgccacc 18664224

                                              
Query: 1309     taccggaagctgctggagggcgaggagagc 1338
                ||||| |||||||||||||| |||||||||
Sbjct: 18664223 taccgcaagctgctggagggagaggagagc 18664194



 Score =  101 bits (51), Expect = 1e-18
 Identities = 78/87 (89%)
 Strand = Plus / Minus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||| || |||||||| ||| | ||||||||| ||||||||||||||||||| ||||||
Sbjct: 18571185 ctgcgtgactaccaggagctgatgaatgtcaagctggccctggatgtggagatcgccacc 18571126

                                           
Query: 1309     taccggaagctgctggagggcgaggag 1335
                ||||| ||||| |||||||||||||||
Sbjct: 18571125 taccgcaagctcctggagggcgaggag 18571099



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||| || |||||||| ||| | || |||||| ||||  ||||||||||||||||||||
Sbjct: 18428262 ctgcgtgactaccaggagctgatgaacgtcaagctggctttggatgtggagattgccacc 18428203

                                           
Query: 1309     taccggaagctgctggagggcgaggag 1335
                ||||| |||||||||||||||||||||
Sbjct: 18428202 taccgcaagctgctggagggcgaggag 18428176



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 76/87 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||| ||||||||||| ||| | || |||||| ||||||||||  | ||||| ||||||
Sbjct: 18157338 ctgcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacc 18157397

                                           
Query: 1309     taccggaagctgctggagggcgaggag 1335
                ||||| |||||||||||||||||||||
Sbjct: 18157398 taccgcaagctgctggagggcgaggag 18157424



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||| ||||||||||| ||| | || |||||| ||||||||||  | ||||| ||||||
Sbjct: 18263481 ctgcgtgagtaccaggagctgatgaacgtcaagctggccctggacatcgagatcgccacc 18263422

                                           
Query: 1309     taccggaagctgctggagggcgaggag 1335
                ||||| |||||||||||||||||||||
Sbjct: 18263421 taccgcaagctgctggagggcgaggag 18263395



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1278     caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 1335
                |||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 18186996 caagctggccctggacgtggagattgccacctacaggaagctgctggaaggcgaggag 18187053



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1278     caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 1335
                |||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 18204730 caagctggccctggacgtggagattgccacctacaggaagctgctggaaggcgaggag 18204787



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1278     caagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 1335
                |||| |||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 18370133 caagctggccctggacgtggagatcgccacctacaggaagctgctggagggcgaggag 18370190



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||||||||||||||| ||| | |   | ||| ||||||||||||||||||| ||||||
Sbjct: 18618907 ctgcgcgagtaccaggagctgatgagcttgaagctggccctggatgtggagatcgccacc 18618848

                                          
Query: 1309     taccggaagctgctggagggcgagga 1334
                ||||| | ||||||||||||||||||
Sbjct: 18618847 taccgcaggctgctggagggcgagga 18618822



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                            
Query: 1276     gtcaagatggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 1335
                |||||| |||||||||| |||||||| ||||||||||| |||||||||||| | ||||||
Sbjct: 18603865 gtcaagctggccctggacgtggagatcgccacctaccgaaagctgctggagagtgaggag 18603806

                   
Query: 1336     agc 1338
                |||
Sbjct: 18603805 agc 18603803



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 1283     tggccctggatgtggagattgccacctaccggaagctgctggagggcgaggag 1335
                |||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 18385550 tggccctggacgtggagatcgccacctaccgcaagctgctagagggcgaggag 18385498



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 1295     tggagattgccacctaccggaagctgctggagggcgaggagagccgg 1341
                ||||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18409742 tggagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18409696



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 1283     tggccctggatgtggagattgccacctaccggaagctgctggagggcgaggagagccgg 1341
                ||||||||||  | ||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18442942 tggccctggacatcgagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18442884



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                               
Query: 1289     tggatgtggagattgccacctaccggaagctgctggagggcgaggag 1335
                |||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 18523713 tggacgtggagatcgccacctaccgcaagctgctggagggcgaggag 18523667



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 87/105 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1237     atggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtg 1296
                ||||| ||||| ||||| ||||||||||| ||| | ||||||||| ||||||||||  | 
Sbjct: 18013707 atggcgcgccagctgcgtgagtaccaggagctgatgaatgtcaagttggccctggacatc 18013766

                                                             
Query: 1297     gagattgccacctaccggaagctgctggagggcgaggagagccgg 1341
                ||||| ||||||||| ||   ||||| || |||||||||| ||||
Sbjct: 18013767 gagatcgccacctacaggcgcctgctagaaggcgaggagatccgg 18013811



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                             
Query: 1297     gagattgccacctaccggaagctgctggagggcgaggagagccgg 1341
                ||||| ||||||||||| ||||||||||||||||||||| |||||
Sbjct: 18586283 gagatcgccacctaccgcaagctgctggagggcgaggagtgccgg 18586239



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 1295     tggagattgccacctaccggaagctgctggagggcgaggagagccgg 1341
                ||||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 18479994 tggagatcgccacctaccgcaagctgctggagagcgaggagtgccgg 18479948



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                            
Query: 919      agggacatccgggctcagtacgagaccatcgcggctaagaacatctcggaagccgaagag 978
                ||||||||||| || |||||||||| ||| ||||| |||||| |   ||| || ||||||
Sbjct: 15693495 agggacatccgcgcccagtacgagagcattgcggcgaagaaccttcaggaggcagaagag 15693554

                                  
Query: 979      tggtacaagtcaaaggtg 996
                ||||||||||| ||||||
Sbjct: 15693555 tggtacaagtccaaggtg 15693572



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1249     ctgcgcgagtaccaggacctgctcaatgtcaagatggccctggatgtggagattgccacc 1308
                ||||| ||||||||||| ||  | | ||||| | ||| ||||||| | ||||| ||||| 
Sbjct: 18124037 ctgcgtgagtaccaggagctcatgattgtcaggctgggcctggattttgagatcgccact 18123978

                                              
Query: 1309     taccggaagctgctggagggcgaggagagc 1338
                ||||| |||||||||||| |||||||||||
Sbjct: 18123977 taccgcaagctgctggagagcgaggagagc 18123948


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  155 bits (78), Expect = 8e-35
 Identities = 120/134 (89%)
 Strand = Plus / Plus

                                                                            
Query: 362      tggacttctcgctggcagacgccgtcaaccaggagttcctgaccacgcgcaccaacgaga 421
                |||||||||||||||| |||||| |||||   ||||||  || ||| |||||||||||||
Sbjct: 48227399 tggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgaga 48227458

                                                                            
Query: 422      aagtggagctgcaggagctcaatgatcgctttgccaactacatcgagaaggtgcgcttcc 481
                | ||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 48227459 aggtggagctgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcc 48227518

                              
Query: 482      tggagcagcagaac 495
                ||||||||||||||
Sbjct: 48227519 tggagcagcagaac 48227532



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 95/111 (85%)
 Strand = Plus / Plus

                                                                            
Query: 1228     aaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagatggcc 1287
                ||||| ||||||||||| ||||| || || ||||| |||||||| |||||||||||||| 
Sbjct: 48232776 aaggaagagatggcccgtcaccttcgtgaataccaagacctgctgaatgtcaagatggct 48232835

                                                                   
Query: 1288     ctggatgtggagattgccacctaccggaagctgctggagggcgaggagagc 1338
                || ||  | ||||||||||||||| ||||||||||||| || || ||||||
Sbjct: 48232836 ctcgacattgagattgccacctacaggaagctgctggaaggagaagagagc 48232886


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  131 bits (66), Expect = 1e-27
 Identities = 105/118 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1224     cctcaaggatgagatggcccgccacctgcgcgagtaccaggacctgctcaatgtcaagat 1283
                ||||||||| |||||||||||||||||||  ||||||||||| |||||||| || ||| |
Sbjct: 18705863 cctcaaggacgagatggcccgccacctgcaggagtaccaggagctgctcaacgttaagct 18705922

                                                                          
Query: 1284     ggccctggatgtggagattgccacctaccggaagctgctggagggcgaggagagccgg 1341
                |||||||||  | ||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 18705923 ggccctggacatcgagatcgccacctacaggaagctgctggagggcgaggagaaccgg 18705980



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 71/82 (86%)
 Strand = Plus / Plus

                                                                            
Query: 439      ctcaatgatcgctttgccaactacatcgagaaggtgcgcttcctggagcagcagaacgcg 498
                ||||| || ||||| |||| |||||||||||| ||||||||||| ||||||||||||  |
Sbjct: 18701221 ctcaacgaccgcttcgccagctacatcgagaaagtgcgcttcctagagcagcagaacaag 18701280

                                      
Query: 499      gcgctcgccgccgaggtgaacc 520
                ||||| || |||||| ||||||
Sbjct: 18701281 gcgctggctgccgagctgaacc 18701302


>Sscrofa_Chr14 
||          Length = 153851969

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                                
Query: 1255     gagtaccaggacctgctcaatgtcaagatggc 1286
                ||||||||||||||||||||||||||||||||
Sbjct: 49579373 gagtaccaggacctgctcaatgtcaagatggc 49579404



 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                            
Query: 413      ccaacgagaaagtggagctgcaggagctcaatgatcgctttgccaactacatcgagaagg 472
                |||||||||| | | ||||||||| ||| || || ||||| ||   ||||||||||||||
Sbjct: 10122260 ccaacgagaaggagcagctgcaggggctgaacgaccgcttcgcgggctacatcgagaagg 10122201

                                       
Query: 473      tgcgcttcctggagcagcagaac 495
                ||| || ||||||||||||||||
Sbjct: 10122200 tgcactacctggagcagcagaac 10122178


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,028,724
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 37
Length of query: 1478
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1457
Effective length of database: 2,808,413,156
Effective search space: 4091857968292
Effective search space used: 4091857968292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)