Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001467
(1194 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776416.1| apolipoprotein E precursor [Bos taurus]. 384 e-107
Alignment gi|XP_002695211.1| PREDICTED: hypothetical protein [Bos taurus]. 103 4e-22
Alignment gi|XP_002701960.1| PREDICTED: hypothetical protein [Bos taurus]. 100 3e-21
Alignment gi|NP_001032557.1| apolipoprotein A-IV precursor [Bos taurus]. 84 3e-16
Alignment gi|NP_776667.2| apolipoprotein A-I preproprotein [Bos taurus]. 59 7e-09
Alignment gi|XP_002693069.1| PREDICTED: apolipoprotein A-I-like [Bos taur... 54 3e-07
Alignment gi|XP_002684375.1| PREDICTED: apolipoprotein A-I-like [Bos taur... 54 3e-07
>ref|NP_776416.1| apolipoprotein E precursor [Bos taurus].
Length = 316
Score = 384 bits (987), Expect = e-107
Identities = 194/262 (74%), Positives = 222/262 (84%)
Frame = +1
Query: 196 SQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELEAQL 375
SQPWEQALGRFWDYLRWVQ+LSDQVQEELL+T+V QELT L+EE+MKEVKAY+EELE QL
Sbjct: 40 SQPWEQALGRFWDYLRWVQTLSDQVQEELLNTQVIQELTALMEETMKEVKAYKEELEGQL 99
Query: 376 GPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXXXXX 555
GP+ QETQAR+SKELQAAQAR+G+DMED+RNRL YRSEV MLGQ+TEE
Sbjct: 100 GPMAQETQARVSKELQAAQARLGSDMEDLRNRLAQYRSEVQAMLGQSTEELRARMASHLR 159
Query: 556 XXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRAGQP 735
D +DL+KRLAVYQAG EGAERS+SA+RER GPLVEQG+ RAATLST AGQP
Sbjct: 160 KLPKRLLRDADDLKKRLAVYQAGASEGAERSLSAIRERFGPLVEQGQSRAATLSTLAGQP 219
Query: 736 LRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQARLK 915
L ERAEAW QKL GRLEE+G R +DRLD++R+QLEEV KVEEQG+Q+RLQAEAFQARL+
Sbjct: 220 LLERAEAWRQKLHGRLEEVGVRAQDRLDKIRQQLEEVHAKVEEQGNQMRLQAEAFQARLR 279
Query: 916 GWFEPLVEDMRRQWAGLVERMQ 981
WFEPLVEDM+RQWAGLVE++Q
Sbjct: 280 SWFEPLVEDMQRQWAGLVEKVQ 301
>ref|XP_002695211.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 280
Score = 103 bits (256), Expect = 4e-22
Identities = 57/91 (62%), Positives = 61/91 (67%)
Frame = -1
Query: 756 GFGALAQRLAGPGTQGGGAQSALLHQGPXXXXXXXXXXXXXXAQPRLVHGQALLQVLGVA 577
G G L QRLAG G QGG + ALLHQGP A P LV GQALLQV+ VA
Sbjct: 30 GLGTLQQRLAGQGAQGGCPRLALLHQGPEALADGAQAALGTLAGPSLVDGQALLQVVSVA 89
Query: 576 EQPLAQLAQVGSQAAPQLLGGLAQHVVHLAA 484
EQPLAQLAQVG A PQLLGGLAQH +HLA+
Sbjct: 90 EQPLAQLAQVGGHAGPQLLGGLAQHGLHLAS 120
>ref|XP_002701960.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 247
Score = 100 bits (248), Expect = 3e-21
Identities = 56/91 (61%), Positives = 60/91 (65%)
Frame = -1
Query: 756 GFGALAQRLAGPGTQGGGAQSALLHQGPXXXXXXXXXXXXXXAQPRLVHGQALLQVLGVA 577
G G L QRLAG G QGG + ALLHQGP A P LV GQALLQV+ VA
Sbjct: 30 GLGTLQQRLAGQGAQGGCPRLALLHQGPEALADGAQAALGTLAGPSLVDGQALLQVVSVA 89
Query: 576 EQPLAQLAQVGSQAAPQLLGGLAQHVVHLAA 484
EQPLAQLAQVG A PQLLG LAQH +HLA+
Sbjct: 90 EQPLAQLAQVGGHAGPQLLGRLAQHGLHLAS 120
>ref|NP_001032557.1| apolipoprotein A-IV precursor [Bos taurus].
Length = 380
Score = 83.6 bits (205), Expect = 3e-16
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 8/256 (3%)
Frame = +1
Query: 208 EQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELEAQLGPVT 387
+Q WDY + + + + E + +++TQ+L L ++ + EV Y ++L+ +L P
Sbjct: 25 DQVATVIWDYFSQLGNNAKKAVEHIQKSELTQQLNTLFQDKLGEVSTYTDDLQKKLVPFA 84
Query: 388 QETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXXXXXXXXX 567
E RL+K+ + + + ++ED+R RL+ + +EV +G E
Sbjct: 85 TELHERLTKDSEKLKEEIRKELEDLRARLLPHATEVSQKIGDNVRE-------------- 130
Query: 568 XXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRAGQPLRER 747
LQ+RL Y LR + LR +L P VE R + +R+
Sbjct: 131 --------LQQRLGPYAEELRTQVDTQAQQLRRQLTPYVE-----------RMEKVMRQN 171
Query: 748 AEAWGQKLRGRLEEMGSRTRDRLDEMREQL----EEVRTKVEEQGSQLRLQ----AEAFQ 903
+ L EE+ + R++E++ +L ++++TK+EE +LR A+ Q
Sbjct: 172 LDQLQASLAPYAEELQATVNQRVEELKGRLTPYADQLQTKIEENVEELRRSLAPYAQDVQ 231
Query: 904 ARLKGWFEPLVEDMRR 951
+L E L M++
Sbjct: 232 GKLNHQLEGLAFQMKK 247
>ref|NP_776667.2| apolipoprotein A-I preproprotein [Bos taurus].
Length = 265
Score = 59.3 bits (142), Expect = 7e-09
Identities = 57/268 (21%), Positives = 110/268 (41%), Gaps = 3/268 (1%)
Frame = +1
Query: 187 WQGSQP---WEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYRE 357
WQ P W++ Y+ ++ + ++ + ++L + ++ + +
Sbjct: 22 WQQDDPQSSWDRVKDFATVYVEAIKDSGRDYVAQFEASALGKQLNLKLLDNWDTLASTLS 81
Query: 358 ELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXX 537
++ QLGPVTQE L KE + + + D+E+V+ ++ Y E +
Sbjct: 82 KVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLDEFQKKWHE-------- 133
Query: 538 XXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLS 717
+ E ++++A REGA + V L+++L PL
Sbjct: 134 --------------EVEIYRQKVAPLGEEFREGARQKVQELQDKLSPL------------ 167
Query: 718 TRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEA 897
Q LR+RA A + LR +L R RL E L+E + E ++ Q +A
Sbjct: 168 ---AQELRDRARAHVETLRQQLAPYSDDLRQRLTARLEALKEGGGSLAEYHAKASEQLKA 224
Query: 898 FQARLKGWFEPLVEDMRRQWAGLVERMQ 981
+ K P++ED+R+ ++E ++
Sbjct: 225 LGEKAK----PVLEDLRQGLLPVLESLK 248
>ref|XP_002693069.1| PREDICTED: apolipoprotein A-I-like [Bos taurus].
Length = 208
Score = 53.9 bits (128), Expect = 3e-07
Identities = 49/199 (24%), Positives = 81/199 (40%)
Frame = +1
Query: 358 ELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXX 537
++ QLGPVTQE L KE + + + D+E+V+ ++ Y E
Sbjct: 40 KVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLDEFQK------------ 87
Query: 538 XXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLS 717
+ E ++++A REGA + V L+++L PL
Sbjct: 88 -----------WHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPL------------ 124
Query: 718 TRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEA 897
Q LR+RA A + LR +L R RL E L+E + E ++ Q +A
Sbjct: 125 ---AQELRDRARAHAETLRQQLAPYSDDLRPRLTARLEALKEGGGSLAEYHAKASEQLKA 181
Query: 898 FQARLKGWFEPLVEDMRRQ 954
+ K P +E +R++
Sbjct: 182 LGEKAK----PALEHLRQE 196
>ref|XP_002684375.1| PREDICTED: apolipoprotein A-I-like [Bos taurus].
Length = 208
Score = 53.9 bits (128), Expect = 3e-07
Identities = 49/199 (24%), Positives = 81/199 (40%)
Frame = +1
Query: 358 ELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXX 537
++ QLGPVTQE L KE + + + D+E+V+ ++ Y E
Sbjct: 40 KVREQLGPVTQEFWDNLEKETASLRQEMHKDLEEVKQKVQPYLDEFQK------------ 87
Query: 538 XXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLS 717
+ E ++++A REGA + V L+++L PL
Sbjct: 88 -----------WHEEVEIYRQKVAPLGEEFREGARQKVQELQDKLSPL------------ 124
Query: 718 TRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEA 897
Q LR+RA A + LR +L R RL E L+E + E ++ Q +A
Sbjct: 125 ---AQELRDRARAHAETLRQQLAPYSDDLRPRLTARLEALKEGGGSLAEYHAKASEQLKA 181
Query: 898 FQARLKGWFEPLVEDMRRQ 954
+ K P +E +R++
Sbjct: 182 LGEKAK----PALEHLRQE 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,409,343
Number of extensions: 664647
Number of successful extensions: 4919
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4850
Number of HSP's successfully gapped: 7
Length of query: 398
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 294
Effective length of database: 14,240,222
Effective search space: 4186625268
Effective search space used: 4186625268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001467
(1194 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866043.1| PREDICTED: similar to Apolipoprotein E precurso... 343 1e-94
Alignment gi|XP_866028.1| PREDICTED: similar to Apolipoprotein E precurso... 343 1e-94
Alignment gi|XP_533644.1| PREDICTED: similar to Apolipoprotein E precurso... 343 1e-94
Alignment gi|XP_852597.1| PREDICTED: similar to Apolipoprotein E precurso... 343 1e-94
Alignment gi|XP_546510.2| PREDICTED: similar to Apolipoprotein A-IV precu... 78 2e-14
Alignment gi|XP_536564.2| PREDICTED: similar to Apolipoprotein A-I precur... 57 5e-08
>ref|XP_866043.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 4
[Canis familiaris].
Length = 323
Score = 343 bits (881), Expect = 1e-94
Identities = 173/265 (65%), Positives = 210/265 (79%)
Frame = +1
Query: 187 WQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELE 366
WQ QPWE AL RFWDYLRWVQ+LSDQVQE +L+T+VTQELT L++E+MKEVKAY+ EL+
Sbjct: 44 WQTGQPWEAALARFWDYLRWVQTLSDQVQEGVLNTQVTQELTALMDETMKEVKAYKAELD 103
Query: 367 AQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXX 546
QLGP+T ETQAR++KELQAAQAR+ +DMEDVRNRL YR E+ MLGQ++EE
Sbjct: 104 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 163
Query: 547 XXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRA 726
D EDLQ+RLAVY+AG+REGAERSVS++RERL PL+EQ R R A + A
Sbjct: 164 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 223
Query: 727 GQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQA 906
QPL ERA+A GQ+LRG+LEEM SR R L+EMREQ++EVR K+EEQ Q+R +AEAFQA
Sbjct: 224 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMREQIQEVRVKMEEQADQIRQKAEAFQA 283
Query: 907 RLKGWFEPLVEDMRRQWAGLVERMQ 981
RLK WFEPL+EDM+RQW GLVE++Q
Sbjct: 284 RLKSWFEPLLEDMQRQWDGLVEKVQ 308
>ref|XP_866028.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 3
[Canis familiaris].
Length = 336
Score = 343 bits (881), Expect = 1e-94
Identities = 173/265 (65%), Positives = 210/265 (79%)
Frame = +1
Query: 187 WQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELE 366
WQ QPWE AL RFWDYLRWVQ+LSDQVQE +L+T+VTQELT L++E+MKEVKAY+ EL+
Sbjct: 57 WQTGQPWEAALARFWDYLRWVQTLSDQVQEGVLNTQVTQELTALMDETMKEVKAYKAELD 116
Query: 367 AQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXX 546
QLGP+T ETQAR++KELQAAQAR+ +DMEDVRNRL YR E+ MLGQ++EE
Sbjct: 117 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 176
Query: 547 XXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRA 726
D EDLQ+RLAVY+AG+REGAERSVS++RERL PL+EQ R R A + A
Sbjct: 177 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 236
Query: 727 GQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQA 906
QPL ERA+A GQ+LRG+LEEM SR R L+EMREQ++EVR K+EEQ Q+R +AEAFQA
Sbjct: 237 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMREQIQEVRVKMEEQADQIRQKAEAFQA 296
Query: 907 RLKGWFEPLVEDMRRQWAGLVERMQ 981
RLK WFEPL+EDM+RQW GLVE++Q
Sbjct: 297 RLKSWFEPLLEDMQRQWDGLVEKVQ 321
>ref|XP_533644.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 1
[Canis familiaris].
Length = 323
Score = 343 bits (881), Expect = 1e-94
Identities = 173/265 (65%), Positives = 210/265 (79%)
Frame = +1
Query: 187 WQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELE 366
WQ QPWE AL RFWDYLRWVQ+LSDQVQE +L+T+VTQELT L++E+MKEVKAY+ EL+
Sbjct: 44 WQTGQPWEAALARFWDYLRWVQTLSDQVQEGVLNTQVTQELTALMDETMKEVKAYKAELD 103
Query: 367 AQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXX 546
QLGP+T ETQAR++KELQAAQAR+ +DMEDVRNRL YR E+ MLGQ++EE
Sbjct: 104 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 163
Query: 547 XXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRA 726
D EDLQ+RLAVY+AG+REGAERSVS++RERL PL+EQ R R A + A
Sbjct: 164 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 223
Query: 727 GQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQA 906
QPL ERA+A GQ+LRG+LEEM SR R L+EMREQ++EVR K+EEQ Q+R +AEAFQA
Sbjct: 224 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMREQIQEVRVKMEEQADQIRQKAEAFQA 283
Query: 907 RLKGWFEPLVEDMRRQWAGLVERMQ 981
RLK WFEPL+EDM+RQW GLVE++Q
Sbjct: 284 RLKSWFEPLLEDMQRQWDGLVEKVQ 308
>ref|XP_852597.1| PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 2
[Canis familiaris].
Length = 336
Score = 343 bits (881), Expect = 1e-94
Identities = 173/265 (65%), Positives = 210/265 (79%)
Frame = +1
Query: 187 WQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELE 366
WQ QPWE AL RFWDYLRWVQ+LSDQVQE +L+T+VTQELT L++E+MKEVKAY+ EL+
Sbjct: 57 WQTGQPWEAALARFWDYLRWVQTLSDQVQEGVLNTQVTQELTALMDETMKEVKAYKAELD 116
Query: 367 AQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXX 546
QLGP+T ETQAR++KELQAAQAR+ +DMEDVRNRL YR E+ MLGQ++EE
Sbjct: 117 EQLGPMTSETQARVAKELQAAQARLRSDMEDVRNRLTQYRGELQAMLGQSSEELRARFAS 176
Query: 547 XXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRA 726
D EDLQ+RLAVY+AG+REGAERSVS++RERL PL+EQ R R A + A
Sbjct: 177 HMRKLRKRVLRDAEDLQRRLAVYKAGVREGAERSVSSIRERLWPLLEQARERNAKVGALA 236
Query: 727 GQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQA 906
QPL ERA+A GQ+LRG+LEEM SR R L+EMREQ++EVR K+EEQ Q+R +AEAFQA
Sbjct: 237 TQPLLERADALGQQLRGQLEEMSSRARGHLEEMREQIQEVRVKMEEQADQIRQKAEAFQA 296
Query: 907 RLKGWFEPLVEDMRRQWAGLVERMQ 981
RLK WFEPL+EDM+RQW GLVE++Q
Sbjct: 297 RLKSWFEPLLEDMQRQWDGLVEKVQ 321
>ref|XP_546510.2| PREDICTED: similar to Apolipoprotein A-IV precursor (Apo-AIV)
(ApoA-IV) [Canis familiaris].
Length = 407
Score = 77.8 bits (190), Expect = 2e-14
Identities = 51/244 (20%), Positives = 106/244 (43%), Gaps = 4/244 (1%)
Frame = +1
Query: 229 WDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELEAQLGPVTQETQARL 408
WDY + + + + E L +++TQ+L L ++ M +V Y + L+ +L P E RL
Sbjct: 55 WDYFSQLSNNAKEAVEHLQQSELTQQLNALFQDKMGQVNTYTDNLQKKLVPFATELHERL 114
Query: 409 SKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXXXXXXXXXXXXXDTE 588
SK+ + + + ++E++R RL+ + SEV +G E E
Sbjct: 115 SKDSEKLKEEIRKELEELRARLLPHASEVSQKIGDNMRELQQRFGPYAEELRTQVNTHAE 174
Query: 589 DLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRAGQPLRERAEAWGQK 768
L+ +L + ++ ++V L L P ++ + + L + K
Sbjct: 175 QLRNQLTSHAQRMQSALRQNVDDLHSSLTPFADELKAKIDQNVEELKGHLTPYTDELKVK 234
Query: 769 LRGRLEE----MGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQARLKGWFEPLV 936
+ +EE + +D +++ QLE + ++++ +L+ + A L+ P+
Sbjct: 235 IDQNVEELRRSLAPYAQDVQEKLNHQLEGLAFQMKKNAEELKAKISANAEELRQRLAPVA 294
Query: 937 EDMR 948
ED+R
Sbjct: 295 EDVR 298
Score = 55.8 bits (133), Expect = 8e-08
Identities = 59/279 (21%), Positives = 114/279 (40%), Gaps = 31/279 (11%)
Frame = +1
Query: 190 QGSQPWEQALGRFWDYLRWVQSLSDQVQEELL--STKVTQELTELIEESMKEVKAYREEL 363
Q S+ +Q F D + V + +D +Q++L+ +T++ + L++ E+ +E++ EEL
Sbjct: 73 QQSELTQQLNALFQDKMGQVNTYTDNLQKKLVPFATELHERLSKDSEKLKEEIRKELEEL 132
Query: 364 EAQLGPVTQETQARLSKELQAAQARVG-----------ADMEDVRNRLVLYRSEVHNMLG 510
A+L P E ++ ++ Q R G E +RN+L + + + L
Sbjct: 133 RARLLPHASEVSQKIGDNMRELQQRFGPYAEELRTQVNTHAEQLRNQLTSHAQRMQSALR 192
Query: 511 QTTEEXXXXXXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVE- 687
Q ++ + E+L+ L Y L+ +++V LR L P +
Sbjct: 193 QNVDDLHSSLTPFADELKAKIDQNVEELKGHLTPYTDELKVKIDQNVEELRRSLAPYAQD 252
Query: 688 --------------QGRLRAATLSTRAG---QPLRERAEAWGQKLRGRLEEMGSRTRDRL 816
Q + A L + + LR+R + +RG+L++ + L
Sbjct: 253 VQEKLNHQLEGLAFQMKKNAEELKAKISANAEELRQRLAPVAEDVRGKLKDNTAGLHKSL 312
Query: 817 DEMREQLEEVRTKVEEQGSQLRLQAEAFQARLKGWFEPL 933
E+ +L++ +VEE + E F L E L
Sbjct: 313 AELSSRLDQ---QVEEFRRNVGPYGETFNKALLQQVEEL 348
>ref|XP_536564.2| PREDICTED: similar to Apolipoprotein A-I precursor (Apo-AI)
(ApoA-I) [Canis familiaris].
Length = 266
Score = 56.6 bits (135), Expect = 5e-08
Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 7/224 (3%)
Frame = +1
Query: 187 WQGSQP---WEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYRE 357
WQ +P W++ Y+ V+ + ++ + ++L + ++ + +
Sbjct: 22 WQQDEPQSPWDRVKDLATVYVDAVKDSGRDYVAQFEASALGKQLNLKLLDNWDSLSSTVT 81
Query: 358 ELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXX 537
+L Q+GPVTQE L KE + + + D+E+V+ ++ Y + + E
Sbjct: 82 KLREQIGPVTQEFWDNLEKETEVLRQEMSKDLEEVKQKVQPYLDDFQKKWQEEVELYRQK 141
Query: 538 XXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAA--- 708
++LQ++L+ LR+ A V ALR +L P + R R A
Sbjct: 142 VAPLGSELREGARQKLQELQEKLSPLGEELRDRARTHVDALRAQLAPYSDDLRERLAARL 201
Query: 709 -TLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQL 837
L G L E + + +L +G + R L+++R+ L
Sbjct: 202 QALKEGGGASLAE----YHARASEQLSALGEKARPALEDLRQGL 241
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,551,697
Number of extensions: 652449
Number of successful extensions: 5332
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5227
Number of HSP's successfully gapped: 7
Length of query: 398
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 293
Effective length of database: 15,374,224
Effective search space: 4504647632
Effective search space used: 4504647632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001467
(1194 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000032.1| apolipoprotein E precursor [Homo sapiens]. 377 e-104
Alignment gi|NP_000473.2| apolipoprotein A-IV precursor [Homo sapiens]. 86 5e-17
Alignment gi|NP_000030.1| apolipoprotein A-I preproprotein [Homo sapiens]. 57 3e-08
>ref|NP_000032.1| apolipoprotein E precursor [Homo sapiens].
Length = 317
Score = 377 bits (967), Expect = e-104
Identities = 188/266 (70%), Positives = 221/266 (83%)
Frame = +1
Query: 184 KWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREEL 363
+WQ Q WE ALGRFWDYLRWVQ+LS+QVQEELLS++VTQEL L++E+MKE+KAY+ EL
Sbjct: 37 EWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSEL 96
Query: 364 EAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXX 543
E QL PV +ET+ARLSKELQAAQAR+GADMEDV RLV YR EV MLGQ+TEE
Sbjct: 97 EEQLTPVAEETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLA 156
Query: 544 XXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTR 723
D +DLQKRLAVYQAG REGAER +SA+RERLGPLVEQGR+RAAT+ +
Sbjct: 157 SHLRKLRKRLLRDADDLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSL 216
Query: 724 AGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQ 903
AGQPL+ERA+AWG++LR R+EEMGSRTRDRLDE++EQ+ EVR K+EEQ Q+RLQAEAFQ
Sbjct: 217 AGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQ 276
Query: 904 ARLKGWFEPLVEDMRRQWAGLVERMQ 981
ARLK WFEPLVEDM+RQWAGLVE++Q
Sbjct: 277 ARLKSWFEPLVEDMQRQWAGLVEKVQ 302
>ref|NP_000473.2| apolipoprotein A-IV precursor [Homo sapiens].
Length = 396
Score = 86.3 bits (212), Expect = 5e-17
Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 11/269 (4%)
Frame = +1
Query: 208 EQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELEAQLGPVT 387
+Q WDY + + + + E L +++TQ+L L ++ + EV Y +L+ +L P
Sbjct: 25 DQVATVMWDYFSQLSNNAKEAVEHLQKSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFA 84
Query: 388 QETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXXXXXXXXX 567
E RL+K+ + + +G ++E++R RL+ + +EV +G E
Sbjct: 85 TELHERLAKDSEKLKEEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRT 144
Query: 568 XXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRAGQPLRE- 744
E L+++L Y A+R LRE L R A L + Q + E
Sbjct: 145 QVSTQAEQLRRQLTPY-------AQRMERVLRENADSLQASLRPHADELKAKIDQNVEEL 197
Query: 745 ------RAEAWGQKLRGRLEE----MGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAE 894
A+ + K+ +EE + +D +++ QLE + ++++ +L+ +
Sbjct: 198 KGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARIS 257
Query: 895 AFQARLKGWFEPLVEDMRRQWAGLVERMQ 981
A L+ PL ED+R G E +Q
Sbjct: 258 ASAEELRQRLAPLAEDVRGNLRGNTEGLQ 286
>ref|NP_000030.1| apolipoprotein A-I preproprotein [Homo sapiens].
Length = 267
Score = 57.0 bits (136), Expect = 3e-08
Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 12/274 (4%)
Frame = +1
Query: 187 WQGSQPWEQALGRFWDYLR-WVQSLSDQVQE---ELLSTKVTQELTELIEESMKEVKAYR 354
WQ +P + R D +V L D ++ + + + ++L + ++ V +
Sbjct: 22 WQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKLLDNWDSVTSTF 81
Query: 355 EELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXX 534
+L QLGPVTQE L KE + + + D+E+V+ ++ Y + +
Sbjct: 82 SKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQE------- 134
Query: 535 XXXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATL 714
+ E ++++ +A L+EGA + + L+E+L PL
Sbjct: 135 ---------------EMELYRQKVEPLRAELQEGARQKLHELQEKLSPL----------- 168
Query: 715 STRAGQPLRERAEAWGQKLRGRL----EEMGSRTRDRLDEMRE----QLEEVRTKVEEQG 870
G+ +R+RA A LR L +E+ R RL+ ++E +L E K E
Sbjct: 169 ----GEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHL 224
Query: 871 SQLRLQAEAFQARLKGWFEPLVEDMRRQWAGLVE 972
S L +A+ L+ P++E + + +E
Sbjct: 225 STLSEKAKPALEDLRQGLLPVLESFKVSFLSALE 258
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,738,951
Number of extensions: 629260
Number of successful extensions: 4907
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4809
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 293
Effective length of database: 14,835,944
Effective search space: 4346931592
Effective search space used: 4346931592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001467
(1194 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033826.2| apolipoprotein E precursor [Mus musculus]. 370 e-102
Alignment gi|NP_031494.2| apolipoprotein A-IV precursor [Mus musculus]. 72 9e-13
Alignment gi|NP_033822.2| apolipoprotein A-I preproprotein [Mus musculus]. 54 2e-07
>ref|NP_033826.2| apolipoprotein E precursor [Mus musculus].
Length = 311
Score = 370 bits (950), Expect = e-102
Identities = 182/266 (68%), Positives = 219/266 (82%)
Frame = +1
Query: 184 KWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREEL 363
+WQ +QPWEQAL RFWDYLRWVQ+LSDQVQEEL S++VTQELT L+E++M EVKAY++EL
Sbjct: 29 EWQSNQPWEQALNRFWDYLRWVQTLSDQVQEELQSSQVTQELTALMEDTMTEVKAYKKEL 88
Query: 364 EAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXX 543
E QLGPV +ET+ARL KE+QAAQAR+GADMED+RNRL YR+EVH MLGQ+TEE
Sbjct: 89 EEQLGPVAEETRARLGKEVQAAQARLGADMEDLRNRLGQYRNEVHTMLGQSTEEIRARLS 148
Query: 544 XXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTR 723
D EDLQKRLAVY+AG REGAER VSA+RERLGPLVEQGR R A L
Sbjct: 149 THLRKMRKRLMRDAEDLQKRLAVYKAGAREGAERGVSAIRERLGPLVEQGRQRTANLGAG 208
Query: 724 AGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQ 903
A QPLR+RA+A+G ++RGRLEE+G++ RDRL+E+RE +EEVR+K+EEQ Q+RLQAE FQ
Sbjct: 209 AAQPLRDRAQAFGDRIRGRLEEVGNQARDRLEEVREHMEEVRSKMEEQTQQIRLQAEIFQ 268
Query: 904 ARLKGWFEPLVEDMRRQWAGLVERMQ 981
ARLKGWFEP+VEDM RQWA L+E++Q
Sbjct: 269 ARLKGWFEPIVEDMHRQWANLMEKIQ 294
>ref|NP_031494.2| apolipoprotein A-IV precursor [Mus musculus].
Length = 395
Score = 72.0 bits (175), Expect = 9e-13
Identities = 58/280 (20%), Positives = 120/280 (42%), Gaps = 22/280 (7%)
Frame = +1
Query: 208 EQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELEAQLGPVT 387
+Q WDY + + + + E+ T VTQ+L+ L ++ + + Y + + +L P
Sbjct: 25 DQVANVVWDYFTQLSNNAKEAVEQFQKTDVTQQLSTLFQDKLGDASTYADGVHNKLVPFV 84
Query: 388 QETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXXXXXXXXX 567
+ L++E + + + ++ED+R+R++ + ++V G+ ++
Sbjct: 85 VQLSGHLAQETERVKEEIKKELEDLRDRMMPHANKVTQTFGENMQKLQEHLKPYAVDLQD 144
Query: 568 XXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVE-------------QGRL--R 702
T++++ +L Y ++ + +V L + PL +G L R
Sbjct: 145 QINTQTQEMKLQLTPYIQRMQTTIKENVDNLHTSMMPLATNLKDKFNRNMEELKGHLTPR 204
Query: 703 AATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLR 882
A L Q L + + G E++ + +M++ EE++TKV + QL+
Sbjct: 205 ANELKATIDQNLEDLRRSLAPLTVGVQEKLNHQMEGLAFQMKKNAEELQTKVSAKIDQLQ 264
Query: 883 LQ----AEAFQARLKGWFEPL---VEDMRRQWAGLVERMQ 981
E Q+++KG E L +ED+ RQ VE +
Sbjct: 265 KNLAPLVEDVQSKVKGNTEGLQKSLEDLNRQLEQQVEEFR 304
>ref|NP_033822.2| apolipoprotein A-I preproprotein [Mus musculus].
Length = 264
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/237 (20%), Positives = 100/237 (42%), Gaps = 12/237 (5%)
Frame = +1
Query: 187 WQGSQPWEQALGRFWDYLR-----WVQSLSDQVQE---ELLSTKVTQELTELIEESMKEV 342
WQ +P Q WD ++ +V ++ D ++ + S+ + Q+L + E+ +
Sbjct: 22 WQQDEPQSQ-----WDKVKDFANVYVDAVKDSGRDYVSQFESSSLGQQLNLNLLENWDTL 76
Query: 343 KAYREELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTE 522
+ +L+ +LGP+T++ L KE + + D+E+V+ ++ Y E + E
Sbjct: 77 GSTVSQLQERLGPLTRDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVE 136
Query: 523 EXXXXXXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLR 702
++LQ RL+ R+ V +LR +L P EQ +R
Sbjct: 137 LYRQKVAPLGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQ--MR 194
Query: 703 AATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMRE----QLEEVRTKVE 861
+ A + + + L+ +G + R L+++R LE ++T+V+
Sbjct: 195 ESLAQRLAELKSNPTLNEYHTRAKTHLKTLGEKARPALEDLRHSLMPMLETLKTQVQ 251
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,913,033
Number of extensions: 517222
Number of successful extensions: 4115
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4048
Number of HSP's successfully gapped: 3
Length of query: 398
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 295
Effective length of database: 12,523,851
Effective search space: 3694536045
Effective search space used: 3694536045
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001467
(1194 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999473.1| apolipoprotein E precursor [Sus scrofa]. 486 e-138
Alignment gi|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa]. 82 6e-16
Alignment gi|NP_999563.1| apolipoprotein A-I preproprotein [Sus scrofa]. 57 2e-08
>ref|NP_999473.1| apolipoprotein E precursor [Sus scrofa].
Length = 317
Score = 486 bits (1252), Expect = e-138
Identities = 255/303 (84%), Positives = 257/303 (84%)
Frame = +1
Query: 121 GCRTEDXXXXXXXXXXXXXXXKWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVT 300
GCRTED KWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVT
Sbjct: 15 GCRTEDEPGPPPEVHVWWEESKWQGSQPWEQALGRFWDYLRWVQSLSDQVQEELLSTKVT 74
Query: 301 QELTELIEESMKEVKAYREELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVL 480
QELTELIEESMKEVKAYREELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVL
Sbjct: 75 QELTELIEESMKEVKAYREELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVL 134
Query: 481 YRSEVHNMLGQTTEEXXXXXXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSAL 660
YRSEVHNMLGQTTEE DTEDLQKRLAVYQAGLREGAERSVSAL
Sbjct: 135 YRSEVHNMLGQTTEELRSRLASHLRNVRKRLVRDTEDLQKRLAVYQAGLREGAERSVSAL 194
Query: 661 RERLGPLVEQGRLRAATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLE 840
RERLGPLVEQGRLRAATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMR++LE
Sbjct: 195 RERLGPLVEQGRLRAATLSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMRDELE 254
Query: 841 EVRTKVEEQGSQLRLQAEAFQARLKGWFEPLVEDMRRQWAGLVERMQXXXXXXXXXXXXX 1020
EVRTKVEEQGSQLRLQAEAFQARLKGWFEPLVEDMRRQWAGLVERMQ
Sbjct: 255 EVRTKVEEQGSQLRLQAEAFQARLKGWFEPLVEDMRRQWAGLVERMQSAVSISSSTSAPS 314
Query: 1021 DNQ 1029
DNQ
Sbjct: 315 DNQ 317
>ref|NP_999553.1| apolipoprotein A-IV precursor [Sus scrofa].
Length = 382
Score = 82.0 bits (201), Expect = 6e-16
Identities = 55/262 (20%), Positives = 114/262 (43%), Gaps = 4/262 (1%)
Frame = +1
Query: 208 EQALGRFWDYLRWVQSLSDQVQEELLSTKVTQELTELIEESMKEVKAYREELEAQLGPVT 387
+Q WDY + S + + E L +++TQ+L L ++ + EV Y E+L+ +L P
Sbjct: 25 DQVATVMWDYFSQLGSNAKKAVEHLQKSELTQQLNTLFQDKLGEVNTYTEDLQKKLVPFA 84
Query: 388 QETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXXXXXXXXXXXX 567
E RL+K+ + + + ++E++R RL+ + +EV +G E
Sbjct: 85 TELHERLTKDSEKLKEEIRRELEELRARLLPHATEVSQKIGDNVRELQQRLGPFTGGLRT 144
Query: 568 XXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQGRLRAATLSTRAGQPLRER 747
+ LQ++L Y + +++ L + P ++ + + L
Sbjct: 145 QVNTQVQQLQRQLKPYAERMESVLRQNIRNLEASVAPYADEFKAKIDQNVEELKGSLTPY 204
Query: 748 AEAWGQKLRGRLEE----MGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQAEAFQARLK 915
AE K+ +EE + +D +++ QLE + ++++Q +L+ + A L+
Sbjct: 205 AEELKAKIDQNVEELRRSLAPYAQDVQEKLNHQLEGLAFQMKKQAEELKAKISANADELR 264
Query: 916 GWFEPLVEDMRRQWAGLVERMQ 981
P+ E++ G E +Q
Sbjct: 265 QKLVPVAENVHGHLKGNTEGLQ 286
>ref|NP_999563.1| apolipoprotein A-I preproprotein [Sus scrofa].
Length = 264
Score = 57.0 bits (136), Expect = 2e-08
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 2/199 (1%)
Frame = +1
Query: 358 ELEAQLGPVTQETQARLSKELQAAQARVGADMEDVRNRLVLYRSEVHNMLGQTTEEXXXX 537
++ QLGPVTQE L KE +A + + D+E+V+ ++ Y + N +
Sbjct: 82 KVREQLGPVTQEFWDNLEKETEALRQEMSKDLEEVKKKVQPYLDDFQNKWQE-------- 133
Query: 538 XXXXXXXXXXXXXXDTEDLQKRLAVYQAGLREGAERSVSALRERLGPLVEQ--GRLRAAT 711
+ E ++++ + A REGA + V L+E+L PL E+ RLRA
Sbjct: 134 --------------EMETYRQKMPL-GAEFREGARQKVQELQEKLSPLAEELRDRLRAHV 178
Query: 712 LSTRAGQPLRERAEAWGQKLRGRLEEMGSRTRDRLDEMREQLEEVRTKVEEQGSQLRLQA 891
+ LR+ + LR R+ + + L E + L E + K +EQ L +A
Sbjct: 179 AA------LRQHVAPYSDDLRQRM----AARFEALKEGGDSLAEYQAKAQEQLKALGEKA 228
Query: 892 EAFQARLKGWFEPLVEDMR 948
+ L+ P++E+++
Sbjct: 229 KPALEDLRQGLLPVLENLK 247
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,340,740
Number of extensions: 475220
Number of successful extensions: 3296
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3243
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,829,335
Effective search space: 2622312495
Effective search space used: 2622312495
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-001467
(1194 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1671 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 1671 bits (843), Expect = 0.0
Identities = 843/843 (100%)
Strand = Plus / Plus
Query: 312 ggagctgatagaggagagcatgaaggaggtgaaggcctaccgcgaggagctggaggcgca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271353 ggagctgatagaggagagcatgaaggaggtgaaggcctaccgcgaggagctggaggcgca 47271412
Query: 372 gctgggccccgtgacccaggagacgcaggcgcgcctgtccaaggagctgcaggcggcgca 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271413 gctgggccccgtgacccaggagacgcaggcgcgcctgtccaaggagctgcaggcggcgca 47271472
Query: 432 ggcccgcgtgggcgccgacatggaggacgtgcgcaaccgcttggtgctctaccgcagcga 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271473 ggcccgcgtgggcgccgacatggaggacgtgcgcaaccgcttggtgctctaccgcagcga 47271532
Query: 492 ggtgcacaacatgttgggccagaccaccgaggagctgcggagccgcctggcttcccacct 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271533 ggtgcacaacatgttgggccagaccaccgaggagctgcggagccgcctggcttcccacct 47271592
Query: 552 gcgcaagctgcgcaagcggctgctccgcgacaccgaggacctgcagaagcgcctggccgt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271593 gcgcaagctgcgcaagcggctgctccgcgacaccgaggacctgcagaagcgcctggccgt 47271652
Query: 612 gtaccaggcggggctgcgcgagggcgccgagcgcagcgtgagcgccctccgcgagcgcct 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271653 gtaccaggcggggctgcgcgagggcgccgagcgcagcgtgagcgccctccgcgagcgcct 47271712
Query: 672 cgggcccctggtggagcagggccgattgcgcgccgccaccctgagtaccagggccggcca 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271713 cgggcccctggtggagcagggccgattgcgcgccgccaccctgagtaccagggccggcca 47271772
Query: 732 gccgctgcgcgagcgcgccgaagcctggggccagaagctgcgcggacggctggaggagat 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271773 gccgctgcgcgagcgcgccgaagcctggggccagaagctgcgcggacggctggaggagat 47271832
Query: 792 gggcagccggacccgcgaccgcctggatgagatgcgtgagcagctggaggaggtgcgcac 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271833 gggcagccggacccgcgaccgcctggatgagatgcgtgagcagctggaggaggtgcgcac 47271892
Query: 852 caaagtggaggagcagggcagccagttgcgcctgcaggccgaggccttccaggcccgcct 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271893 caaagtggaggagcagggcagccagttgcgcctgcaggccgaggccttccaggcccgcct 47271952
Query: 912 caaaggctggttcgagcctctggtggaagacatgcggcgccagtgggccgggctggtgga 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47271953 caaaggctggttcgagcctctggtggaagacatgcggcgccagtgggccgggctggtgga 47272012
Query: 972 gaggatgcagtcggccgtgagcatcagctcctccacctctgcgcccagtgataatcagtg 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47272013 gaggatgcagtcggccgtgagcatcagctcctccacctctgcgcccagtgataatcagtg 47272072
Query: 1032 agtgccctctcatccgggcacccccttcggggccccgttcctgcccaactcccccgcctc 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47272073 agtgccctctcatccgggcacccccttcggggccccgttcctgcccaactcccccgcctc 47272132
Query: 1092 ccccagccttagctgccctcttggtgggcccctgcttaataaagattcatcaagcttcac 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47272133 ccccagccttagctgccctcttggtgggcccctgcttaataaagattcatcaagcttcac 47272192
Query: 1152 agc 1154
|||
Sbjct: 47272193 agc 47272195
Score = 379 bits (191), Expect = e-102
Identities = 194/195 (99%)
Strand = Plus / Plus
Query: 118 gcaggatgccggacagaggatgagccggggccgccgccggaggtgcacgtgtggtgggag 177
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 47270788 gcaggatgccggacagaggacgagccggggccgccgccggaggtgcacgtgtggtgggag 47270847
Query: 178 gagcccaagtggcagggcagccagccctgggagcaggccctgggccgcttctgggattac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47270848 gagcccaagtggcagggcagccagccctgggagcaggccctgggccgcttctgggattac 47270907
Query: 238 ctgcgctgggtgcagtccctgtctgaccaagtgcaggaggagctgctcagcaccaaggtc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47270908 ctgcgctgggtgcagtccctgtctgaccaagtgcaggaggagctgctcagcaccaaggtc 47270967
Query: 298 acccaggaactgacg 312
|||||||||||||||
Sbjct: 47270968 acccaggaactgacg 47270982
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 55 ggttggccaatcgcaagccagaagatgagggttctgtgggttgctttggtggtaaccctc 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47269972 ggttggccaatcgcaagccagaagatgagggttctgtgggttgctttggtggtaaccctc 47270031
Query: 115 ctcgcagg 122
||||||||
Sbjct: 47270032 ctcgcagg 47270039
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,590,270
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 3
Length of query: 1194
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1173
Effective length of database: 2,808,413,156
Effective search space: 3294268631988
Effective search space used: 3294268631988
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)